CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP014129	Pantoea vagans strain FDAARGOS_160 chromosome, complete genome	0 crisprs	DEDDh,cas3,DinG,csa3	6
CP014126	Pantoea vagans strain FDAARGOS_160 plasmid unnamed1, complete sequence	0 crisprs	NA	1
CP014127	Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence	0 crisprs	csa3	0
CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	0 crisprs	NA	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1086030 : 1094808

Streptococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG57642.1\|1086030_1087143_-	porin	Q1MVN1	Enterobacteria_phage	5.6e-111	56.2
AMG57643.1\|1087381_1088485_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.7e-59	42.4
AMG57644.1\|1088495_1089749_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	4.3e-91	44.1
AMG57645.1\|1090110_1090842_+	chromophore lyase	A0A2I6PIE7	Escherichia_phage	6.4e-47	37.5
AVE16834.1\|1091264_1091543_+	hypothetical protein	NA	NA	NA	NA
AMG57647.1\|1091747_1092215_+	lysozyme	H9C148	Vibrio_phage	8.9e-26	44.7
AMG57648.1\|1092211_1092559_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	5.4e-20	45.6
AMG57649.1\|1092555_1092849_+	hypothetical protein	NA	NA	NA	NA
AMG57650.1\|1093053_1094808_+	amylovoran biosynthesis protein AmsF	A0A1S6L3G8	Erwinia_phage	2.1e-152	46.4

DBSCAN-SWA_2

1157524 : 1197270

uncultured_Caudovirales_phage(25.0%)

terminase,coat,tail,integrase,plate,protease

attL 1157455:1157475|attR 1204147:1204167

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1157455:1157475	attL	NA	NA	NA	NA
AMG57705.1\|1157524_1158568_-\|integrase	site-specific integrase	K7PKD7	Enterobacteria_phage	4.4e-57	35.5
AMG57706.2\|1158880_1159201_-	hypothetical protein	B0ZSH8	Halomonas_phage	9.7e-24	51.8
AMG57707.1\|1159257_1159632_-	hypothetical protein	A0A173GC52	Salmonella_phage	3.9e-08	38.3
AMG57708.1\|1159628_1159847_-	hypothetical protein	A0A2H4IYB3	uncultured_Caudovirales_phage	7.3e-31	87.1
AMG57709.2\|1159904_1160399_-	hypothetical protein	NA	NA	NA	NA
AMG57710.1\|1160395_1160638_-	DNA polymerase III subunit theta	A0A2H4J4A9	uncultured_Caudovirales_phage	2.8e-31	88.8
AMG57711.1\|1160668_1160980_-	hypothetical protein	A0A0S3UG40	Pseudomonas_phage	1.5e-05	39.1
AMG57712.1\|1161062_1161437_-	hypothetical protein	NA	NA	NA	NA
AMG57713.1\|1161433_1161952_-	hypothetical protein	A0A291L9X9	Bordetella_phage	5.3e-11	46.5
AMG57714.1\|1161948_1162671_-	hypothetical protein	A0A2I2L6M3	Escherichia_phage	5.6e-11	58.6
AMG57715.1\|1162720_1163029_-	hypothetical protein	A0A2H4JCD0	uncultured_Caudovirales_phage	4.9e-41	87.3
AMG57716.1\|1163056_1163533_-	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	7.1e-55	82.7
AMG57717.1\|1163533_1164148_-	single-stranded DNA-binding protein	A0A1W6JP21	Morganella_phage	4.7e-67	66.0
AMG57718.1\|1164282_1164480_-	protein kil	A0A075B8F9	Enterobacteria_phage	3.1e-20	69.2
AVE16836.1\|1164476_1164620_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	NA	NA	NA	NA
AMG57719.1\|1164967_1165231_-	hypothetical protein	NA	NA	NA	NA
AMG57720.1\|1165344_1165836_-	hypothetical protein	A0A2H4J4Q4	uncultured_Caudovirales_phage	1.9e-39	52.5
AMG57721.1\|1166051_1166291_-	hypothetical protein	A0A2H4J657	uncultured_Caudovirales_phage	6.6e-09	46.0
AMG57722.1\|1166738_1167428_-	helix-turn-helix transcriptional regulator	F1C5C2	Cronobacter_phage	1.2e-111	90.0
AMG57723.1\|1167526_1167754_+	XRE family transcriptional regulator	S5FKP1	Shigella_phage	3.0e-11	50.0
AMG57724.1\|1167870_1168140_+	hypothetical protein	I6RSP4	Salmonella_phage	4.6e-19	64.0
AMG57725.1\|1168175_1168877_+	hypothetical protein	NA	NA	NA	NA
AMG57726.1\|1168876_1169755_+	hypothetical protein	G8C7U5	Escherichia_phage	1.2e-100	68.1
AMG57727.1\|1169757_1170609_+	ATP-binding protein	K7PLU3	Enterobacteria_phage	6.2e-94	62.7
AMG57728.1\|1170605_1170830_+	hypothetical protein	A0A2H4J1E7	uncultured_Caudovirales_phage	5.4e-21	81.4
AMG57729.1\|1170829_1171093_+	DUF3850 domain-containing protein	R9TML3	Aeromonas_phage	1.5e-22	66.7
AMG57730.1\|1171073_1171430_+	hypothetical protein	NA	NA	NA	NA
AMG60230.1\|1171440_1171728_+	hypothetical protein	Q6UAT9	Klebsiella_phage	1.7e-27	64.0
AMG57731.1\|1171724_1171922_+	hypothetical protein	A0A2H4J4C7	uncultured_Caudovirales_phage	3.2e-09	42.9
AMG57732.1\|1171893_1172328_+	recombination protein NinB	A0A2H4J8D9	uncultured_Caudovirales_phage	7.1e-70	92.9
AMG57733.1\|1172324_1172615_+	hypothetical protein	A0A2H4JI39	uncultured_Caudovirales_phage	5.5e-10	36.8
AMG57734.1\|1172607_1172808_+	hypothetical protein	A0A2H4JE12	uncultured_Caudovirales_phage	3.4e-27	90.6
AMG57735.2\|1172804_1173014_+	hypothetical protein	R9TRD3	Aeromonas_phage	4.2e-12	49.3
AVE16837.1\|1173103_1173289_+	hypothetical protein	A0A2H4J175	uncultured_Caudovirales_phage	9.9e-13	67.8
AMG57736.1\|1173281_1173863_+	protein NinG	A0A2R2Z332	Escherichia_phage	2.9e-34	44.4
AMG57737.1\|1173859_1174057_+	hypothetical protein	M9NZE6	Enterobacteria_phage	6.6e-23	75.4
AMG57738.1\|1174168_1174990_+	antitermination protein	E5AGG3	Erwinia_phage	6.7e-93	63.2
AMG57739.1\|1175269_1175683_-	hypothetical protein	A0A0D4DCG1	Acinetobacter_phage	1.9e-19	39.0
AMG57740.1\|1175728_1175911_-	addiction module toxin, HicA family	NA	NA	NA	NA
AMG57741.1\|1176208_1176628_+	hypothetical protein	NA	NA	NA	NA
AMG57742.1\|1176624_1176861_+	hypothetical protein	NA	NA	NA	NA
AMG57743.1\|1176857_1177325_+	lysozyme	H9C148	Vibrio_phage	2.0e-25	41.1
AMG57744.1\|1177321_1177666_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.8e-20	45.0
AMG57745.1\|1177662_1177959_+	hypothetical protein	NA	NA	NA	NA
AMG57746.1\|1178106_1178376_+	hypothetical protein	NA	NA	NA	NA
AMG57747.1\|1178653_1179181_+	hypothetical protein	A0A1V0E5P7	Salmonella_phage	2.0e-50	62.5
AMG57748.1\|1179272_1179707_-	hypothetical protein	NA	NA	NA	NA
AMG57749.1\|1179729_1180299_+\|terminase	terminase small subunit	G0ZND3	Cronobacter_phage	2.5e-75	75.1
AMG57750.1\|1180285_1181758_+	DNA-packaging protein	G0ZND4	Cronobacter_phage	1.8e-245	84.6
AMG60231.1\|1181830_1183168_+	DUF4055 domain-containing protein	A0A0S2SYJ5	Pseudomonas_phage	2.2e-85	40.4
AMG57751.1\|1183288_1184041_+	hypothetical protein	G8C7P6	Escherichia_phage	8.0e-61	49.2
AMG57752.1\|1184055_1185180_+\|coat	P22 coat - protein 5 family protein	W6EBZ8	Rhizobium_phage	5.4e-93	53.0
AMG57753.1\|1185225_1185471_+	hypothetical protein	NA	NA	NA	NA
AMG57754.1\|1185470_1185863_+	hypothetical protein	NA	NA	NA	NA
AMG57755.1\|1185864_1186509_+	hypothetical protein	NA	NA	NA	NA
AMG57756.1\|1186510_1187332_+	hypothetical protein	NA	NA	NA	NA
AMG57757.1\|1187335_1187557_+	hypothetical protein	NA	NA	NA	NA
AMG60232.1\|1187615_1189172_+\|tail	phage tail protein	B3GAJ6	uncultured_virus	6.1e-95	44.4
AMG57758.1\|1189218_1189650_+	hypothetical protein	NA	NA	NA	NA
AMG57759.1\|1189659_1190031_+	hypothetical protein	NA	NA	NA	NA
AMG57760.1\|1190212_1190650_+	hypothetical protein	NA	NA	NA	NA
AMG60233.1\|1190697_1191126_-	hypothetical protein	J7HXA3	Pseudomonas_phage	6.9e-09	33.3
AMG57761.1\|1191363_1191654_+	hypothetical protein	NA	NA	NA	NA
AMG57762.1\|1191718_1194181_+	hypothetical protein	K4NZX3	Burkholderia_phage	5.5e-42	29.8
AMG57763.1\|1194191_1195181_+	hypothetical protein	NA	NA	NA	NA
AMG57764.1\|1195183_1196299_+	type IV secretion protein Rhs	NA	NA	NA	NA
AMG57765.1\|1196295_1196895_+\|plate	baseplate assembly protein	Q8HAB9	Salmonella_phage	2.2e-08	32.9
AMG57766.1\|1196904_1197270_+\|tail	phage tail protein	NA	NA	NA	NA
1204147:1204167	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1996305 : 2010155

Tupanvirus(11.11%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG58466.1\|1996305_1998234_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.4e-125	36.8
AMG58467.1\|1998237_1998789_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.7e-15	32.9
AMG58468.1\|1998888_1999086_+	50S ribosomal protein L35	NA	NA	NA	NA
AMG58469.1\|1999130_1999487_+	50S ribosomal protein L20	NA	NA	NA	NA
AMG58470.1\|1999801_2000785_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	2.9e-34	37.6
AMG58471.1\|2000799_2003187_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	1.2e-09	32.0
AMG58472.1\|2003191_2003494_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.3e-13	40.0
AMG58473.1\|2003673_2004657_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
AMG58474.1\|2004707_2005253_+	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	7.7e-13	37.4
AMG58475.1\|2005253_2006003_+	vitamin B12 ABC transporter ATP-binding protein BtuD	W5SAS9	Pithovirus	8.7e-07	26.9
AMG58476.1\|2006071_2006530_+	endopeptidase	A0A217EQL1	Bacillus_phage	5.5e-12	37.5
AMG58477.1\|2006824_2007571_+	diguanylate phosphodiesterase	NA	NA	NA	NA
AMG58478.1\|2007650_2009102_+	YdiU family protein	NA	NA	NA	NA
AMG58479.1\|2009108_2010155_-	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	5.5e-84	49.7

DBSCAN-SWA_4

2454976 : 2508411

Erwinia_phage(26.67%)

holin,tail,integrase,tRNA,plate,protease

attL 2486584:2486614|attR 2516511:2516541

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG58853.1\|2454976_2455675_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
AMG58854.1\|2455719_2457636_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	6.3e-86	32.2
AMG58855.1\|2457885_2458623_-	carbonic anhydrase	NA	NA	NA	NA
AMG58856.1\|2459772_2460132_+	hypothetical protein	NA	NA	NA	NA
AMG58857.1\|2460199_2460544_+	RidA family protein	NA	NA	NA	NA
AMG58858.1\|2460556_2460751_-	YoaH family protein	NA	NA	NA	NA
AMG58859.1\|2460861_2462241_+	aminodeoxychorismate synthase component 1	A0A0B5J984	Pandoravirus	4.9e-40	32.7
AMG58860.1\|2462224_2462788_+	CoA pyrophosphatase	NA	NA	NA	NA
AMG58861.1\|2462973_2464338_+	L-serine ammonia-lyase	NA	NA	NA	NA
AMG58862.1\|2464562_2466125_+	cyclic diguanylate phosphodiesterase	NA	NA	NA	NA
AMG58863.1\|2466261_2467860_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	8.3e-39	44.4
AMG58864.1\|2468369_2469332_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA
AMG60300.1\|2469395_2470196_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA
AMG58865.1\|2470211_2471057_+	PTS mannose transporter subunit IID	NA	NA	NA	NA
AMG58866.1\|2471148_2471607_+	DUF986 domain-containing protein	NA	NA	NA	NA
AMG58867.1\|2471603_2472413_-	23S rRNA (guanine(745)-N(1))-methyltransferase	NA	NA	NA	NA
AMG58868.1\|2472550_2472760_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	5.9e-22	76.6
AMG58869.1\|2473412_2474417_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AMG58870.1\|2474435_2474708_-	hypothetical protein	NA	NA	NA	NA
AMG58871.1\|2474920_2475157_+	hypothetical protein	NA	NA	NA	NA
AMG58872.1\|2475187_2475979_-	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
AMG58873.1\|2476165_2477530_+	MFS transporter	NA	NA	NA	NA
AMG58874.1\|2477879_2478761_-\|protease	protease HtpX	NA	NA	NA	NA
AMG58875.1\|2479005_2481045_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	7.2e-88	34.7
AMG58876.1\|2481064_2481769_-	RNA chaperone ProQ	NA	NA	NA	NA
AMG58877.1\|2481865_2482366_-	GAF domain-containing protein	NA	NA	NA	NA
AMG58878.1\|2482580_2483825_+	paraquat-inducible protein A	NA	NA	NA	NA
AMG58879.1\|2483793_2486427_+	MCE family protein	NA	NA	NA	NA
2486584:2486614	attL	NA	NA	NA	NA
AMG58880.1\|2486808_2488242_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AMG58881.1\|2488243_2488891_-	serine/threonine-protein phosphatase	K7P6H8	Enterobacteria_phage	3.9e-56	48.1
AMG58882.1\|2489159_2489372_-	DUF1272 domain-containing protein	NA	NA	NA	NA
AMG58883.1\|2489518_2490868_-	MFS transporter	NA	NA	NA	NA
AMG58884.1\|2491003_2493034_-\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	4.4e-21	26.2
AMG58885.1\|2493289_2493883_+	transcriptional regulator BetI	NA	NA	NA	NA
AMG58886.1\|2493897_2495370_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
AMG58887.1\|2495393_2497076_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	4.2e-57	30.7
AMG58888.1\|2497504_2497855_+	multidrug/spermidine transporter subunit MdtJ	NA	NA	NA	NA
AMG58889.1\|2497841_2498171_+	multidrug/spermidine transporter subunit MdtI	NA	NA	NA	NA
AMG58890.1\|2498371_2499514_+	acyltransferase	Q6QI96	Burkholderia_phage	6.1e-36	31.2
AMG58891.1\|2499677_2499938_+	hypothetical protein	NA	NA	NA	NA
AMG58892.1\|2500054_2500240_+	hypothetical protein	NA	NA	NA	NA
AMG58893.1\|2500689_2501712_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	5.7e-25	25.9
AVE16868.1\|2502618_2503119_+\|plate	baseplate J-like family protein	F1BUP3	Erwinia_phage	1.7e-67	82.5
AMG58894.1\|2503111_2503720_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	5.3e-95	81.7
AMG58895.1\|2503716_2504760_+\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	3.3e-121	65.1
AMG58896.1\|2505404_2505845_-	hypothetical protein	NA	NA	NA	NA
AMG58897.1\|2505862_2506396_-	hypothetical protein	NA	NA	NA	NA
AVE16869.1\|2507025_2507241_+	transcriptional regulator	F1BUT0	Erwinia_phage	7.4e-28	77.8
AMG58899.1\|2507346_2508411_+\|integrase	integrase	A0A0M4S6G4	Salmonella_phage	8.0e-115	56.0
2516511:2516541	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3269979 : 3281395

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG59503.1\|3269979_3271176_+	DUF4102 domain-containing protein	A0A1V0E8G8	Vibrio_phage	2.1e-103	45.5
AMG60333.2\|3271192_3272059_+	HAD family hydrolase	NA	NA	NA	NA
AMG59504.1\|3272055_3272664_+	hypothetical protein	NA	NA	NA	NA
AMG59505.1\|3272732_3274655_-	ATP-binding protein	A0A2H4J2R8	uncultured_Caudovirales_phage	8.2e-126	38.8
AMG59506.1\|3275014_3275266_-	transcriptional regulator	F1BUT0	Erwinia_phage	1.3e-15	63.8
AMG59507.1\|3275262_3275979_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.7e-12	26.4
AMG59508.1\|3276500_3276758_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	6.4e-18	57.0
AMG59509.1\|3276754_3277003_+	hypothetical protein	NA	NA	NA	NA
AVE16880.1\|3277016_3277544_+	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.4e-29	67.0
AMG59511.1\|3277540_3277807_+	hypothetical protein	NA	NA	NA	NA
AMG59512.1\|3277793_3278135_+	hypothetical protein	NA	NA	NA	NA
AVE16910.1\|3278149_3280465_+	DNA primase	Q7M2A8	Enterobacteria_phage	4.4e-259	60.4
AMG59513.1\|3280618_3281395_-	thymidylate synthase (FAD)	A0A166Y9A6	Gordonia_phage	1.3e-29	39.0

DBSCAN-SWA_6

3650735 : 3691394

Salmonella_phage(69.05%)

tail,head,capsid,portal,integrase,tRNA,plate

attL 3658779:3658830|attR 3693574:3693625

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG59810.1\|3650735_3651749_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.7e-106	58.3
AMG59811.1\|3652026_3652242_+	30S ribosomal protein S21	NA	NA	NA	NA
AMG59812.1\|3652360_3654106_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.4e-71	36.6
AVE16911.1\|3654320_3654419_-	DNA metabolism protein	NA	NA	NA	NA
AMG59813.1\|3654602_3656444_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.9e-34	33.3
AMG59814.1\|3656518_3657037_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
AMG59815.1\|3657033_3657618_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
3658779:3658830	attL	NA	NA	NA	NA
AVE16887.1\|3659346_3659565_-	transcriptional regulator	E5G6Q4	Salmonella_phage	3.1e-21	69.1
AMG59816.1\|3659631_3660732_-	late control protein D	E5G6Q3	Salmonella_phage	3.9e-149	72.9
AMG59817.1\|3660728_3661214_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.7e-57	82.7
AMG59818.1\|3661210_3664246_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	2.1e-128	41.4
AVE16888.1\|3664238_3664373_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	5.3e-08	60.5
AMG59819.1\|3664375_3664684_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	2.7e-31	68.6
AMG59820.1\|3664740_3665256_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	3.7e-81	86.0
AMG59821.1\|3665268_3666438_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	6.4e-198	88.7
AMG59822.1\|3666556_3667156_-\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	5.5e-36	43.9
AMG59823.1\|3667155_3668412_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.0e-121	50.2
AMG59824.1\|3668408_3669020_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	6.3e-88	74.5
AMG59825.1\|3669016_3669931_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	5.7e-101	65.2
AMG59826.1\|3669917_3670274_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	5.0e-37	63.2
AMG60356.1\|3670270_3670849_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.9e-70	69.1
AMG59827.1\|3671114_3671651_+	hypothetical protein	NA	NA	NA	NA
AMG59828.1\|3671638_3672094_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	7.8e-43	61.6
AMG59829.1\|3672086_3672518_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.2e-56	75.7
AVE16889.1\|3672480_3672684_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	3.4e-22	73.1
AMG59830.1\|3672613_3673042_-	hypothetical protein	A0A1S6KZX8	Salmonella_phage	1.1e-33	56.8
AMG59831.2\|3673038_3673446_-	hypothetical protein	NA	NA	NA	NA
AMG59832.1\|3673414_3673924_-	lysozyme	E5G6N1	Salmonella_phage	1.2e-71	76.2
AMG59833.1\|3673904_3674117_-	hypothetical protein	E5G6N0	Salmonella_phage	1.4e-18	63.2
AMG59834.1\|3674120_3674324_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.4e-28	83.6
AMG59835.1\|3674323_3674788_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	2.1e-59	69.5
AMG59836.1\|3674887_3675532_-	hypothetical protein	E5G6M7	Salmonella_phage	6.0e-81	72.2
AMG59837.1\|3675535_3676753_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	1.0e-137	70.7
AMG59838.1\|3676797_3677655_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	9.4e-82	58.6
AMG59839.1\|3677797_3679564_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	8.2e-306	85.2
AMG59840.1\|3679563_3680607_+\|portal	phage portal protein	E5G6M3	Salmonella_phage	4.3e-161	78.9
AMG59841.1\|3680662_3681358_-	hypothetical protein	NA	NA	NA	NA
AMG59842.1\|3681377_3682442_-	hypothetical protein	NA	NA	NA	NA
AMG59843.1\|3682438_3683503_-	hypothetical protein	NA	NA	NA	NA
AVE16890.1\|3683481_3683730_-	hypothetical protein	NA	NA	NA	NA
AMG59844.1\|3683761_3684028_-	hypothetical protein	J9Q7T5	Salmonella_phage	7.6e-14	46.6
AMG59845.1\|3684101_3684341_-	DNA-damage-inducible protein DinI	A0A1S6L014	Salmonella_phage	4.0e-22	65.3
AMG59846.1\|3684353_3684542_-	hypothetical protein	A0A1S6L006	Salmonella_phage	3.4e-21	83.3
AMG59847.2\|3684711_3687081_-	endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	80.6
AMG59848.1\|3687080_3687881_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.6e-89	63.5
AMG59849.1\|3687877_3688105_-	hypothetical protein	F1BUS2	Erwinia_phage	9.6e-18	61.1
AMG59850.1\|3688104_3688332_-	DUF2732 domain-containing protein	F1BUS3	Erwinia_phage	1.6e-12	53.3
AMG59851.1\|3688401_3688740_-	hypothetical protein	A0A218M4I7	Erwinia_phage	1.6e-29	58.9
AVE16891.1\|3688703_3688892_-	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	4.7e-10	57.9
AMG59852.1\|3688895_3689405_-	hypothetical protein	F1BUS6	Erwinia_phage	1.2e-60	70.8
AMG59853.1\|3689439_3689676_-	regulator	NA	NA	NA	NA
AMG59854.1\|3689765_3690371_+	phage repressor protein	F1BUN8	Cronobacter_phage	2.2e-29	38.2
AMG59855.1\|3690380_3691394_+\|integrase	integrase	F1BUS9	Erwinia_phage	8.2e-117	62.3
3693574:3693625	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP014126

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

16364 : 23305

Morganella_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMG56146.1\|16364_16601_-	impB/mucB/samB family protein	F1C5A5	Cronobacter_phage	2.9e-25	67.1
AMG56218.2\|16603_17053_-	SamA	A0A1W6JNS2	Morganella_phage	8.5e-26	50.8
AMG56147.1\|17508_18189_-	DUF159 family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	5.5e-109	79.9
AMG56148.1\|18326_18707_+	peptidase	A0A1W6JNS2	Morganella_phage	3.1e-13	38.2
AMG56149.1\|18706_19969_+	translesion error-prone DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	7.0e-134	56.7
AMG56150.1\|20043_20832_-	hypothetical protein	NA	NA	NA	NA
AVE16790.1\|21060_21324_-	hypothetical protein	NA	NA	NA	NA
AMG56151.1\|21443_22088_+	DNA methylase	A0A2K9VH43	Faecalibacterium_phage	1.4e-32	40.3
AMG56152.1\|22123_22354_+	hypothetical protein	NA	NA	NA	NA
AMG56153.1\|22804_23305_+	antirestriction protein	A0A1I9S7Y0	Rhodococcus_phage	2.4e-13	33.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP014129

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP014126

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection