CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP014028	Achromobacter xylosoxidans strain FDAARGOS_150, complete genome	0 crisprs	csa3,PD-DExK,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,DEDDh,WYL,DinG	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2221189 : 2288723

Burkholderia_virus(19.05%)

tRNA,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUZ18993.1\|2221189_2221960_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
AMH05197.1\|2221959_2222901_+	prolyl aminopeptidase	NA	NA	NA	NA
AMH05198.1\|2222911_2223112_+	thiamine biosynthesis protein ThiS	NA	NA	NA	NA
AMH05199.1\|2223362_2223680_+	hypothetical protein	NA	NA	NA	NA
AMH05200.1\|2223726_2224173_+	peptidoglycan-binding protein LysM	G3MBQ1	Bacillus_virus	1.2e-06	50.7
AMH05201.1\|2224351_2225758_-	signal recognition particle protein	NA	NA	NA	NA
AMH05202.1\|2225864_2226707_+	hypothetical protein	NA	NA	NA	NA
AUZ18994.1\|2227192_2227771_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	A0A1W6DX33	Sphingobium_phage	1.8e-07	31.1
AMH05203.1\|2227788_2228409_+	glutathione S-transferase	NA	NA	NA	NA
AMH07389.2\|2228477_2230502_-	hypothetical protein	NA	NA	NA	NA
AMH05204.1\|2230690_2231650_-	hypothetical protein	NA	NA	NA	NA
AMH05205.1\|2231757_2232789_-	epimerase	A0A2H4UUK0	Bodo_saltans_virus	5.2e-26	27.2
AUZ18995.1\|2232794_2234270_-	aldehyde dehydrogenase	NA	NA	NA	NA
AMH05206.2\|2234368_2235304_+	LysR family transcriptional regulator	NA	NA	NA	NA
AMH05207.1\|2235433_2236792_-	heme transporter	NA	NA	NA	NA
AMH05208.1\|2236788_2238135_-	hemolysin D	NA	NA	NA	NA
AMH05209.1\|2238131_2240054_-	type I secretion system permease/ATPase	A0A2R8FG22	Brazilian_cedratvirus	3.7e-17	32.9
AUZ20403.1\|2240185_2240794_-	heme acquisition protein HasAp	NA	NA	NA	NA
AUZ20404.1\|2240933_2244101_-	heme transporter	NA	NA	NA	NA
AUZ18996.1\|2244347_2245703_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
AMH05213.1\|2245706_2245967_-	XRE family transcriptional regulator	NA	NA	NA	NA
AMH05214.1\|2246101_2247121_-	siderophore-interacting protein	NA	NA	NA	NA
AMH05215.1\|2247193_2247700_-	RNA polymerase sigma factor	NA	NA	NA	NA
AMH05216.1\|2247891_2248731_-	transcriptional regulator	NA	NA	NA	NA
AMH05217.1\|2248987_2250004_+	2-dehydro-3-deoxygalactonokinase	NA	NA	NA	NA
AMH05218.1\|2250000_2250654_+	2-dehydro-3-deoxy-6-phosphogalactonate aldolase	NA	NA	NA	NA
AMH05219.1\|2250650_2251799_+	galactonate dehydratase	Q6A202	Oenococcus_phage	3.3e-58	37.0
AMH05220.1\|2251831_2253142_+	MFS transporter	NA	NA	NA	NA
AMH05221.1\|2253374_2254085_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	4.8e-07	24.5
AMH05222.1\|2254081_2255470_+	DUF3526 domain-containing protein	NA	NA	NA	NA
AUZ18997.1\|2255480_2256941_+	ABC transporter permease	NA	NA	NA	NA
AMH05223.1\|2259168_2260368_-	MFS transporter	NA	NA	NA	NA
AMH05224.1\|2260805_2262695_-	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.2e-118	37.4
AMH05225.1\|2262896_2264300_-	hypothetical protein	NA	NA	NA	NA
AUZ18998.1\|2264451_2265843_+	xanthine permease XanP	H9YQ34	environmental_Halophage	1.8e-26	48.9
AUZ20405.1\|2266326_2266626_-	hypothetical protein	NA	NA	NA	NA
AMH05226.1\|2266941_2267958_+	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	5.0e-66	39.0
AMH05227.1\|2268157_2268439_+	peptidylprolyl isomerase	NA	NA	NA	NA
AMH05228.1\|2268787_2269723_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
AMH05229.1\|2269775_2270975_+	ABC transporter permease	NA	NA	NA	NA
AUZ18999.1\|2271005_2271824_+	SDR family NAD(P)-dependent oxidoreductase	W8CYX9	Bacillus_phage	1.4e-10	49.3
AMH05230.1\|2271842_2272772_-	LysR family transcriptional regulator	NA	NA	NA	NA
AMH05231.1\|2272913_2273510_-\|tail	phage tail protein	C7BGD3	Burkholderia_phage	1.6e-48	52.5
AUZ19000.1\|2273506_2273743_-	hypothetical protein	NA	NA	NA	NA
AMH05232.1\|2273723_2274089_-	hypothetical protein	NA	NA	NA	NA
AMH07390.1\|2274093_2277597_-	host specificity protein J	A4JX16	Burkholderia_virus	1.7e-262	45.4
AMH05233.1\|2277722_2278328_-\|tail	tail assembly protein	Q6JIL3	Burkholderia_virus	1.0e-50	55.7
AMH05234.1\|2278324_2279104_-	hydrolase Nlp/P60	Q3HQU3	Burkholderia_phage	1.5e-65	47.3
AMH05235.1\|2279106_2279835_-\|tail	phage minor tail protein L	A4JX13	Burkholderia_virus	1.7e-68	56.6
AUZ19001.1\|2279837_2282474_-	hypothetical protein	A0A1B1IX43	uncultured_Mediterranean_phage	4.7e-15	42.9
AMH07391.2\|2282479_2282824_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	8.5e-26	48.6
AUZ19002.1\|2282820_2284107_-\|tail	phage tail tape measure protein	A0A1W6JP49	Morganella_phage	2.2e-13	30.3
AMH05240.2\|2284164_2284455_-	DUF4035 domain-containing protein	S4TND7	Salmonella_phage	2.7e-12	48.2
AMH05241.1\|2284454_2284928_-\|tail	phage tail protein	A4JX08	Burkholderia_virus	1.4e-26	44.4
AUZ19003.1\|2284933_2285401_-	hypothetical protein	NA	NA	NA	NA
AUZ20406.1\|2285651_2286221_-	hypothetical protein	NA	NA	NA	NA
AUZ19004.1\|2286595_2287213_+	LexA family transcriptional repressor	NA	NA	NA	NA
AUZ19005.1\|2287265_2288723_-	cell envelope protein	M1IA53	Paramecium_bursaria_Chlorella_virus	1.4e-64	35.6

DBSCAN-SWA_2

4729555 : 4739654

Burkholderia_phage(71.43%)

tail,integrase

attL 4724563:4724578|attR 4740320:4740335

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4724563:4724578	attL	NA	NA	NA	NA
AMH06485.1\|4729555_4730005_+	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	1.1e-17	36.5
AUZ20462.1\|4730001_4730190_+	hypothetical protein	NA	NA	NA	NA
AUZ19818.1\|4730182_4731856_+\|tail	phage tail protein	NA	NA	NA	NA
AMH06490.2\|4731848_4732448_+	hypothetical protein	NA	NA	NA	NA
AMH06491.1\|4732457_4732757_+	hypothetical protein	NA	NA	NA	NA
AMH06492.1\|4732776_4733787_+	hypothetical protein	A9YX04	Burkholderia_phage	4.8e-77	50.3
AUZ19819.1\|4733821_4734565_+	hypothetical protein	A9YX06	Burkholderia_phage	6.7e-84	63.9
AMH06493.1\|4734573_4734927_+	hypothetical protein	A9YX11	Burkholderia_phage	4.6e-35	66.7
AUZ19820.1\|4734923_4736105_+	hypothetical protein	A9YX12	Burkholderia_phage	9.8e-130	62.6
AMH06494.1\|4736106_4736772_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	1.2e-73	60.6
AUZ19821.1\|4738278_4738629_+\|tail	phage tail protein	NA	NA	NA	NA
AUZ19822.1\|4738631_4739654_-\|integrase	integrase	A0A2H4JE37	uncultured_Caudovirales_phage	4.8e-24	32.3
4740320:4740335	attR	NA	NA	NA	NA

DBSCAN-SWA_3

4746832 : 4758968

Pseudomonas_phage(55.56%)

integrase

attL 4742416:4742430|attR 4755755:4755769

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4742416:4742430	attL	NA	NA	NA	NA
AMH06497.2\|4746832_4747888_-\|integrase	integrase	A0A1B0VP19	Pseudomonas_phage	3.6e-22	26.6
AMH06498.1\|4747889_4748177_-	hypothetical protein	NA	NA	NA	NA
AMH06499.2\|4748173_4748887_-	hypothetical protein	O03965	Myxococcus_phage	3.2e-51	45.8
AMH06500.1\|4748879_4749923_-	hypothetical protein	NA	NA	NA	NA
AMH06501.1\|4749926_4750208_-	hypothetical protein	K4JS57	Caulobacter_phage	4.8e-11	34.9
AMH06502.1\|4750210_4750684_-	hypothetical protein	NA	NA	NA	NA
AUZ19831.1\|4750683_4751436_-	hypothetical protein	H2BD37	Pseudomonas_phage	1.5e-19	42.5
AMH06503.2\|4751432_4751798_-	hypothetical protein	NA	NA	NA	NA
AMH06504.1\|4751923_4752538_-	3'-5' exonuclease	I3PUZ1	Vibrio_phage	5.8e-49	50.5
AUZ19832.1\|4752553_4754338_-	recombinase RecF	J7HXJ7	Pseudomonas_phage	4.2e-84	37.3
AMH06505.1\|4754347_4755517_-	recombination-associated protein RdgC	A0A218M310	Acidovorax_phage	5.8e-42	33.0
AMH06506.1\|4756740_4756962_-	hypothetical protein	NA	NA	NA	NA
4755755:4755769	attR	NA	NA	NA	NA
AMH06507.1\|4756977_4757781_-	hypothetical protein	J7HXJ4	Pseudomonas_phage	1.7e-69	51.0
AMH06508.1\|4757795_4757984_-	hypothetical protein	NA	NA	NA	NA
AMH06509.1\|4757980_4758265_-	hypothetical protein	NA	NA	NA	NA
AMH06510.1\|4758261_4758471_-	hypothetical protein	NA	NA	NA	NA
AMH06511.1\|4758467_4758968_-	hypothetical protein	A0A0S3UG68	Pseudomonas_phage	8.6e-35	49.7

DBSCAN-SWA_4

4778102 : 4788335

uncultured_Mediterranean_phage(14.29%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMH06531.1\|4778102_4778744_+	hypothetical protein	A0A1B1ITG1	uncultured_Mediterranean_phage	5.5e-26	35.2
AMH06532.1\|4778747_4779137_+	hypothetical protein	NA	NA	NA	NA
AMH06533.1\|4779138_4779672_+	hypothetical protein	NA	NA	NA	NA
AMH06534.2\|4779684_4780146_+	hypothetical protein	NA	NA	NA	NA
AUZ19838.1\|4780149_4781487_+	hypothetical protein	A0A0B5A509	Achromobacter_phage	4.9e-61	61.2
AMH06536.1\|4781483_4781894_+	hypothetical protein	NA	NA	NA	NA
AMH07512.2\|4781917_4782268_+	hypothetical protein	E5E3W4	Burkholderia_phage	1.6e-16	44.4
AMH06537.1\|4782269_4782578_+\|holin	phage holin family protein	A0A0U4J8T9	Pseudomonas_phage	7.9e-07	46.2
AMH06538.1\|4782580_4784236_+	hypothetical protein	A0A2R2Z356	Escherichia_phage	1.2e-51	28.6
AMH06539.1\|4784238_4785408_+	hypothetical protein	Q08J79	Stx2-converting_phage	2.0e-18	38.4
AMH06540.1\|4785407_4785698_+	hypothetical protein	NA	NA	NA	NA
AMH06541.1\|4785698_4786343_+	hypothetical protein	NA	NA	NA	NA
AUZ19839.1\|4786364_4786652_+	hypothetical protein	NA	NA	NA	NA
AMH06542.1\|4786648_4787122_+	hypothetical protein	NA	NA	NA	NA
AUZ19840.1\|4787123_4788335_+	hypothetical protein	A0A248SL32	Klebsiella_phage	1.3e-31	34.0

DBSCAN-SWA_5

5653120 : 5661055

Moraxella_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AMH06984.1\|5653120_5653708_+	thymidylate synthase	A0A1X9I5T8	Streptococcus_phage	9.2e-20	36.8
AUZ20113.1\|5653741_5654116_-	thioredoxin	V9SJ74	Achromobacter_phage	1.9e-10	27.8
AMH06985.1\|5654313_5655336_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AUZ20114.1\|5655714_5656071_+	glyoxalase/bleomycin resistance/extradiol dioxygenase family protein	NA	NA	NA	NA
AMH06986.1\|5656155_5657448_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	5.4e-65	36.3
AUZ20115.1\|5657556_5658588_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-92	51.6
AMH06987.1\|5658657_5659299_-	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
AUZ20116.1\|5659487_5660246_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.5e-67	51.6
AUZ20500.1\|5660365_5661055_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.1e-31	45.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage