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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP026328 Acidithiobacillus caldus strain MTH-04 chromosome, complete genome 5 crisprs csa3,DEDDh,PrimPol,cas6e,cas3,DinG,Cas9_archaeal 0 11 7 0
CP026329 Acidithiobacillus caldus strain MTH-04 plasmid p1, complete sequence 0 crisprs cas14j,RT 0 0 2 0
CP026330 Acidithiobacillus caldus strain MTH-04 plasmid p2, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP026328
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026328_1 1072868-1072954 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026328_2 1113335-1113437 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026328_3 1146369-1147431 Unclear I-C,I-E,II-B
17 spacers
cas6e

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026328_4 1148490-1149776 Unclear NA:I-C,I-E,II-B
21 spacers
cas6e

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026328_5 1928811-1928967 Unclear NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP026328_3 3.10|1146943|33|CP026328|CRT,CRISPRCasFinder,PILER-CR 1146943-1146975 33 NC_010600 Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence 40877-40909 0 1.0
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 KT373978 Mycobacterium phage Ukulele, complete genome 73462-73488 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MF668277 Mycobacterium phage MadamMonkfish, complete genome 73903-73929 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MG099953 Mycobacterium phage Youngblood, complete genome 74245-74271 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MF919506 Mycobacterium phage FireRed, complete genome 74566-74592 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MK359320 Mycobacterium phage Cookies, complete genome 74689-74715 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MN096364 Mycobacterium phage Tomaszewski, complete genome 73056-73082 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MH590587 Mycobacterium phage xkcd, complete genome 75264-75290 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 KF493883 Mycobacterium phage Mosby, complete genome 72882-72908 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MH513978 Mycobacterium phage Phaja, complete genome 74021-74047 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 KY549152 Mycobacterium phage Maxxinista, complete genome 73273-73299 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MF919529 Mycobacterium phage Sassay, complete genome 71844-71870 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MH077579 Mycobacterium phage Halley, complete genome 111540-111566 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MH513972 Mycobacterium phage IHOP, complete genome 74016-74042 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MH669017 Mycobacterium phage Zelink, complete genome 110929-110955 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MH536827 Mycobacterium phage Simpliphy, complete genome 73714-73740 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 NC_022065 Mycobacterium phage Contagion, complete genome 72882-72908 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MH020247 Mycobacterium phage MPhalcon, complete genome 73644-73670 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MH576956 Mycobacterium phage Inca, complete genome 72213-72239 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 NC_022969 Mycobacterium phage PhatBacter, complete genome 74566-74592 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 KF562099 Mycobacterium phage Bruin, complete genome 72559-72585 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 JF937091 Mycobacterium phage Bask21, complete genome 73346-73372 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 JN006062 Mycobacterium phage Rakim, complete genome 74055-74081 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 KF279417 Mycobacterium phage Quink, complete genome 74623-74649 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MH399774 Mycobacterium phage DoctorDiddles, complete genome 73418-73444 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MN586017 Mycobacterium phage OrionPax, complete genome 73461-73487 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MF919535 Mycobacterium phage Terminus, complete genome 74518-74544 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 NC_022976 Mycobacterium phage Nala, complete genome 73933-73959 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 NC_021305 Mycobacterium phage Murphy, complete genome 74230-74256 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MF919540 Mycobacterium phage Willez, complete genome 72925-72951 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 MT522005 Mycobacterium phage Misfit, complete genome 74518-74544 6 0.778
CP026328_3 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder 1146764-1146790 27 KC691255 Mycobacterium phage Dumbo, complete genome 74085-74111 6 0.778
CP026328_4 4.3|1148639|33|CP026328|CRISPRCasFinder 1148639-1148671 33 MT498041 Mycobacterium phage KingCyrus, complete genome 15016-15048 6 0.818
CP026328_4 4.3|1148639|33|CP026328|CRISPRCasFinder 1148639-1148671 33 MF919490 Mycobacterium phage Anselm, complete genome 14728-14760 6 0.818
CP026328_4 4.3|1148639|33|CP026328|CRISPRCasFinder 1148639-1148671 33 KU985095 Mycobacterium phage ChipMunk, complete genome 15016-15048 6 0.818
CP026328_4 4.3|1148639|33|CP026328|CRISPRCasFinder 1148639-1148671 33 KU985093 Mycobacterium phage EvilGenius, complete genome 15026-15058 6 0.818
CP026328_4 4.5|1148761|33|CP026328|CRISPRCasFinder 1148761-1148793 33 NZ_CP027406 Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence 78448-78480 6 0.818
CP026328_4 4.5|1148761|33|CP026328|CRISPRCasFinder 1148761-1148793 33 NC_008386 Roseobacter denitrificans OCh 114 plasmid pTB1, complete sequence 91355-91387 6 0.818
CP026328_4 4.6|1148822|26|CP026328|CRISPRCasFinder 1148822-1148847 26 NC_014841 Pantoea sp. At-9b plasmid pPAT9B04, complete sequence 129967-129992 6 0.769
CP026328_3 3.16|1147309|33|CP026328|CRT,CRISPRCasFinder,PILER-CR 1147309-1147341 33 MN813693 Mycobacterium phage Imvubu, complete genome 42725-42757 7 0.788
CP026328_4 4.33|1149299|33|CP026328|CRISPRCasFinder 1149299-1149331 33 NZ_CP016618 Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence 627021-627053 7 0.788
CP026328_4 4.33|1149299|33|CP026328|CRISPRCasFinder 1149299-1149331 33 NZ_CP004394 Celeribacter indicus strain P73 plasmid pP73A, complete sequence 117437-117469 7 0.788
CP026328_4 4.37|1149537|29|CP026328|CRISPRCasFinder 1149537-1149565 29 NZ_CP032297 Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence 120229-120257 7 0.759
CP026328_4 4.37|1149537|29|CP026328|CRISPRCasFinder 1149537-1149565 29 NZ_CP036488 Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence 445220-445248 7 0.759
CP026328_4 4.37|1149537|29|CP026328|CRISPRCasFinder 1149537-1149565 29 NZ_CP034838 Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence 516926-516954 7 0.759
CP026328_4 4.37|1149537|29|CP026328|CRISPRCasFinder 1149537-1149565 29 NZ_CP034839 Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence 516926-516954 7 0.759
CP026328_4 4.37|1149537|29|CP026328|CRISPRCasFinder 1149537-1149565 29 NZ_CP034837 Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence 474727-474755 7 0.759
CP026328_4 4.7|1148876|33|CP026328|CRISPRCasFinder 1148876-1148908 33 NZ_CP050105 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence 185166-185198 8 0.758
CP026328_4 4.7|1148876|33|CP026328|CRISPRCasFinder 1148876-1148908 33 NZ_CP050110 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence 185168-185200 8 0.758
CP026328_4 4.33|1149299|33|CP026328|CRISPRCasFinder 1149299-1149331 33 NZ_CP030360 Salinibacter ruber strain SP38 plasmid pSR76, complete sequence 44517-44549 8 0.758
CP026328_4 4.33|1149299|33|CP026328|CRISPRCasFinder 1149299-1149331 33 NZ_CP030372 Salinibacter ruber strain RM158 plasmid pSR67, complete sequence 21794-21826 8 0.758
CP026328_3 3.16|1147309|33|CP026328|CRT,CRISPRCasFinder,PILER-CR 1147309-1147341 33 MN585972 Arthrobacter phage Edmundo, complete genome 18488-18520 9 0.727
CP026328_4 4.3|1148639|33|CP026328|CRISPRCasFinder 1148639-1148671 33 MK919472 Mycobacterium phage Benvolio, complete genome 14718-14750 9 0.727
CP026328_4 4.3|1148639|33|CP026328|CRISPRCasFinder 1148639-1148671 33 KF981601 Mycobacterium phage Echild, complete genome 14718-14750 9 0.727
CP026328_4 4.4|1148700|33|CP026328|CRISPRCasFinder 1148700-1148732 33 MF417852 Uncultured Caudovirales phage clone 10S_16, partial genome 3503-3535 9 0.727
CP026328_4 4.7|1148876|33|CP026328|CRISPRCasFinder 1148876-1148908 33 NZ_CP030764 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence 71949-71981 9 0.727
CP026328_4 4.31|1149177|33|CP026328|CRISPRCasFinder 1149177-1149209 33 MF417852 Uncultured Caudovirales phage clone 10S_16, partial genome 3503-3535 9 0.727

1. spacer 3.10|1146943|33|CP026328|CRT,CRISPRCasFinder,PILER-CR matches to NC_010600 (Acidithiobacillus caldus strain MNG plasmid pTcM1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtattattcaaggtcgtagacgctttcatgac	CRISPR spacer
ggtattattcaaggtcgtagacgctttcatgac	Protospacer
*********************************

2. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to KT373978 (Mycobacterium phage Ukulele, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

3. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MF668277 (Mycobacterium phage MadamMonkfish, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

4. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MG099953 (Mycobacterium phage Youngblood, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

5. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MF919506 (Mycobacterium phage FireRed, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

6. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MK359320 (Mycobacterium phage Cookies, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

7. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MN096364 (Mycobacterium phage Tomaszewski, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

8. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MH590587 (Mycobacterium phage xkcd, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

9. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to KF493883 (Mycobacterium phage Mosby, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

10. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MH513978 (Mycobacterium phage Phaja, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

11. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to KY549152 (Mycobacterium phage Maxxinista, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

12. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MF919529 (Mycobacterium phage Sassay, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

13. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MH077579 (Mycobacterium phage Halley, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

14. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MH513972 (Mycobacterium phage IHOP, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

15. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MH669017 (Mycobacterium phage Zelink, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

16. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MH536827 (Mycobacterium phage Simpliphy, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

17. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to NC_022065 (Mycobacterium phage Contagion, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

18. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MH020247 (Mycobacterium phage MPhalcon, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

19. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MH576956 (Mycobacterium phage Inca, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

20. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to NC_022969 (Mycobacterium phage PhatBacter, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

21. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to KF562099 (Mycobacterium phage Bruin, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

22. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to JF937091 (Mycobacterium phage Bask21, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

23. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to JN006062 (Mycobacterium phage Rakim, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

24. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to KF279417 (Mycobacterium phage Quink, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

25. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MH399774 (Mycobacterium phage DoctorDiddles, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

26. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MN586017 (Mycobacterium phage OrionPax, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

27. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MF919535 (Mycobacterium phage Terminus, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

28. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to NC_022976 (Mycobacterium phage Nala, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

29. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to NC_021305 (Mycobacterium phage Murphy, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

30. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MF919540 (Mycobacterium phage Willez, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

31. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to MT522005 (Mycobacterium phage Misfit, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

32. spacer 3.7|1146764|27|CP026328|CRT,CRISPRCasFinder matches to KC691255 (Mycobacterium phage Dumbo, complete genome) position: , mismatch: 6, identity: 0.778

gatgattgaccggcttacgtcggaacg	CRISPR spacer
aatgattgaccgggttacgtcagagtt	Protospacer
.************ *******.**.. 

33. spacer 4.3|1148639|33|CP026328|CRISPRCasFinder matches to MT498041 (Mycobacterium phage KingCyrus, complete genome) position: , mismatch: 6, identity: 0.818

gacggatccttacgagacctggccgccggtgga	CRISPR spacer
gtcgcctccttacgagacctcgccgccgatggc	Protospacer
* **  ************** *******.*** 

34. spacer 4.3|1148639|33|CP026328|CRISPRCasFinder matches to MF919490 (Mycobacterium phage Anselm, complete genome) position: , mismatch: 6, identity: 0.818

gacggatccttacgagacctggccgccggtgga	CRISPR spacer
gccgcctccttacgagacctcgccgccgatggc	Protospacer
* **  ************** *******.*** 

35. spacer 4.3|1148639|33|CP026328|CRISPRCasFinder matches to KU985095 (Mycobacterium phage ChipMunk, complete genome) position: , mismatch: 6, identity: 0.818

gacggatccttacgagacctggccgccggtgga	CRISPR spacer
gtcgcctccttacgagacctcgccgccgatggc	Protospacer
* **  ************** *******.*** 

36. spacer 4.3|1148639|33|CP026328|CRISPRCasFinder matches to KU985093 (Mycobacterium phage EvilGenius, complete genome) position: , mismatch: 6, identity: 0.818

gacggatccttacgagacctggccgccggtgga	CRISPR spacer
gtcgcctccttacgagacctcgccgccgatggc	Protospacer
* **  ************** *******.*** 

37. spacer 4.5|1148761|33|CP026328|CRISPRCasFinder matches to NZ_CP027406 (Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.818

tagc-cccgcttgcctgccagtccttgcgccagc	CRISPR spacer
-agcacctgcttgcctgccagaccttgcgcagga	Protospacer
 *** **.************* ******** .* 

38. spacer 4.5|1148761|33|CP026328|CRISPRCasFinder matches to NC_008386 (Roseobacter denitrificans OCh 114 plasmid pTB1, complete sequence) position: , mismatch: 6, identity: 0.818

tagc-cccgcttgcctgccagtccttgcgccagc	CRISPR spacer
-agcacctgcttgcctgccagaccttgcgcagga	Protospacer
 *** **.************* ******** .* 

39. spacer 4.6|1148822|26|CP026328|CRISPRCasFinder matches to NC_014841 (Pantoea sp. At-9b plasmid pPAT9B04, complete sequence) position: , mismatch: 6, identity: 0.769

caggagcaggcatggctatctatcac	CRISPR spacer
gtcgagcaggcatggatatctatctg	Protospacer
   ************ ********  

40. spacer 3.16|1147309|33|CP026328|CRT,CRISPRCasFinder,PILER-CR matches to MN813693 (Mycobacterium phage Imvubu, complete genome) position: , mismatch: 7, identity: 0.788

cccagattcgtgttgccggtggccgacttgtgg	CRISPR spacer
cccagtttcgtcttgccggtggccatccactgg	Protospacer
***** ***** ************. *.  ***

41. spacer 4.33|1149299|33|CP026328|CRISPRCasFinder matches to NZ_CP016618 (Microvirga ossetica strain V5/3m plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.788

gggttatgggcctcgagaaggtgctcctcgccg	CRISPR spacer
agctcgcgggcgtggagaaggtgctcctcgccg	Protospacer
.* *...**** * *******************

42. spacer 4.33|1149299|33|CP026328|CRISPRCasFinder matches to NZ_CP004394 (Celeribacter indicus strain P73 plasmid pP73A, complete sequence) position: , mismatch: 7, identity: 0.788

gggttatgggcctcgagaaggtgctcctcgccg	CRISPR spacer
ggatcgcgggcgtcgcgaaggtgctcctcgcgg	Protospacer
**.*...**** *** *************** *

43. spacer 4.37|1149537|29|CP026328|CRISPRCasFinder matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 7, identity: 0.759

acgagaatgcgctggcttacgtcgaatag	CRISPR spacer
cgaaaaatgcgctggtttacgtcgaaaat	Protospacer
  .*.**********.********** * 

44. spacer 4.37|1149537|29|CP026328|CRISPRCasFinder matches to NZ_CP036488 (Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence) position: , mismatch: 7, identity: 0.759

acgagaatgcgctggcttacgtcgaatag	CRISPR spacer
cgaaaaatgcgctggtttacgtcgaaaat	Protospacer
  .*.**********.********** * 

45. spacer 4.37|1149537|29|CP026328|CRISPRCasFinder matches to NZ_CP034838 (Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence) position: , mismatch: 7, identity: 0.759

acgagaatgcgctggcttacgtcgaatag	CRISPR spacer
cgaaaaatgcgctggtttacgtcgaaaat	Protospacer
  .*.**********.********** * 

46. spacer 4.37|1149537|29|CP026328|CRISPRCasFinder matches to NZ_CP034839 (Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence) position: , mismatch: 7, identity: 0.759

acgagaatgcgctggcttacgtcgaatag	CRISPR spacer
cgaaaaatgcgctggtttacgtcgaaaat	Protospacer
  .*.**********.********** * 

47. spacer 4.37|1149537|29|CP026328|CRISPRCasFinder matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 7, identity: 0.759

acgagaatgcgctggcttacgtcgaatag	CRISPR spacer
cgaaaaatgcgctggtttacgtcgaaaat	Protospacer
  .*.**********.********** * 

48. spacer 4.7|1148876|33|CP026328|CRISPRCasFinder matches to NZ_CP050105 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence) position: , mismatch: 8, identity: 0.758

gggttatgggcctcgagaatgtgctcctcgccg	CRISPR spacer
tggcaagcagcctcaagaatgtgctccacgccg	Protospacer
 **. *  .*****.************ *****

49. spacer 4.7|1148876|33|CP026328|CRISPRCasFinder matches to NZ_CP050110 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence) position: , mismatch: 8, identity: 0.758

gggttatgggcctcgagaatgtgctcctcgccg	CRISPR spacer
tggcaagcagcctcaagaatgtgctccacgccg	Protospacer
 **. *  .*****.************ *****

50. spacer 4.33|1149299|33|CP026328|CRISPRCasFinder matches to NZ_CP030360 (Salinibacter ruber strain SP38 plasmid pSR76, complete sequence) position: , mismatch: 8, identity: 0.758

gggttatgggcctcgagaaggtgctcctcgccg	CRISPR spacer
tcttttttcgccccgagaaggtgctcctcggcg	Protospacer
   ** *  ***.***************** **

51. spacer 4.33|1149299|33|CP026328|CRISPRCasFinder matches to NZ_CP030372 (Salinibacter ruber strain RM158 plasmid pSR67, complete sequence) position: , mismatch: 8, identity: 0.758

gggttatgggcctcgagaaggtgctcctcgccg	CRISPR spacer
tcttttttcgccccgagaaggtgctcctcggcg	Protospacer
   ** *  ***.***************** **

52. spacer 3.16|1147309|33|CP026328|CRT,CRISPRCasFinder,PILER-CR matches to MN585972 (Arthrobacter phage Edmundo, complete genome) position: , mismatch: 9, identity: 0.727

cccagattcgtgttgccggtggccgacttgtgg	CRISPR spacer
tccagcttcgtggtgccggtggccggggtggcc	Protospacer
.**** ****** ************.  **   

53. spacer 4.3|1148639|33|CP026328|CRISPRCasFinder matches to MK919472 (Mycobacterium phage Benvolio, complete genome) position: , mismatch: 9, identity: 0.727

gacggatccttacgagacctggccgccggtgga	CRISPR spacer
gcgccccccttacgagacctcgccgccgatggc	Protospacer
*     .************* *******.*** 

54. spacer 4.3|1148639|33|CP026328|CRISPRCasFinder matches to KF981601 (Mycobacterium phage Echild, complete genome) position: , mismatch: 9, identity: 0.727

gacggatccttacgagacctggccgccggtgga	CRISPR spacer
gcgccccccttacgagacctcgccgccgatggc	Protospacer
*     .************* *******.*** 

55. spacer 4.4|1148700|33|CP026328|CRISPRCasFinder matches to MF417852 (Uncultured Caudovirales phage clone 10S_16, partial genome) position: , mismatch: 9, identity: 0.727

cgttccagtctgtcgctccctcggggatctcaa	CRISPR spacer
gtggccagtcggtcgctccctcgtggatattat	Protospacer
    ****** ************ **** *.* 

56. spacer 4.7|1148876|33|CP026328|CRISPRCasFinder matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.727

gggttatgggcctcgagaatgtgctcctcgccg	CRISPR spacer
tggcaggcagcctcaagaatgtgctccacgccg	Protospacer
 **. .  .*****.************ *****

57. spacer 4.31|1149177|33|CP026328|CRISPRCasFinder matches to MF417852 (Uncultured Caudovirales phage clone 10S_16, partial genome) position: , mismatch: 9, identity: 0.727

cgttccagtctgtcgctccctcggggatctcaa	CRISPR spacer
gtggccagtcggtcgctccctcgtggatattat	Protospacer
    ****** ************ **** *.* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 390484 : 439173 42 uncultured_Mediterranean_phage(14.29%) protease,transposase,tRNA NA
DBSCAN-SWA_2 504173 : 516711 13 Staphylococcus_phage(37.5%) NA NA
DBSCAN-SWA_3 904299 : 1006118 83 Lysinibacillus_phage(19.05%) integrase,transposase attL 911830:911889|attR 970800:972101
DBSCAN-SWA_4 1032148 : 1078905 43 Lysinibacillus_phage(27.78%) transposase NA
DBSCAN-SWA_5 1498404 : 1590057 70 Lysinibacillus_phage(26.32%) transposase NA
DBSCAN-SWA_6 1725595 : 1779203 46 Lysinibacillus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_7 2026611 : 2100601 59 uncultured_virus(14.29%) transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP026329
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 16 : 73188 56 Lysinibacillus_phage(19.05%) integrase,transposase,protease attL 21038:21097|attR 71958:73262
DBSCAN-SWA_2 108110 : 188277 58 uncultured_Mediterranean_phage(15.79%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage