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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP027058 Klebsiella pneumoniae strain 2_GR_12 plasmid ColRNAI, complete sequence 0 crisprs NA 0 0 0 0
CP027053 Klebsiella pneumoniae strain 2_GR_12 chromosome, complete genome 1 crisprs DEDDh,RT,DinG,cas3,csa3,WYL 0 1 10 0
CP027054 Klebsiella pneumoniae strain 2_GR_12 plasmid IncFIB IncFII 0 crisprs csa3,RT,cas3 0 0 1 0
CP027056 Klebsiella pneumoniae strain 2_GR_12 plasmid IncFIB 0 crisprs NA 0 0 2 0
CP027057 Klebsiella pneumoniae strain 2_GR_12 plasmid IncX3, complete sequence 0 crisprs NA 0 0 4 0
CP027055 Klebsiella pneumoniae strain 2_GR_12 plasmid IncAC2 0 crisprs DEDDh 0 0 1 0

Results visualization

1. CP027053
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP027053_2 3261329-3261423 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP027053_1 1.1|2777413|36|CP027053|CRISPRCasFinder 2777413-2777448 36 MK448233 Klebsiella phage ST11-VIM1phi8.1, complete genome 8447-8482 0 1.0
CP027053_1 1.1|2777413|36|CP027053|CRISPRCasFinder 2777413-2777448 36 MK448235 Klebsiella phage ST512-KPC3phi13.1, complete genome 8447-8482 0 1.0
CP027053_1 1.1|2777413|36|CP027053|CRISPRCasFinder 2777413-2777448 36 MK448231 Klebsiella phage ST101-KPC2phi6.1, complete genome 11383-11418 0 1.0

1. spacer 1.1|2777413|36|CP027053|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

2. spacer 1.1|2777413|36|CP027053|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

3. spacer 1.1|2777413|36|CP027053|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 347 : 17153 16 Salmonella_phage(42.86%) holin,tail NA
DBSCAN-SWA_2 347221 : 354128 6 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_3 505030 : 511862 7 Escherichia_phage(16.67%) transposase NA
DBSCAN-SWA_4 1413385 : 1424258 9 Escherichia_phage(85.71%) NA NA
DBSCAN-SWA_5 1618585 : 1733109 138 Salmonella_phage(27.84%) holin,plate,transposase,terminase,lysis,tail,capsid,protease,head NA
DBSCAN-SWA_6 1780691 : 1826155 60 Enterobacteria_phage(22.92%) holin,transposase,terminase,tail,integrase attL 1811324:1811339|attR 1834163:1834178
DBSCAN-SWA_7 2203831 : 2296781 96 Salmonella_phage(57.89%) plate,portal,tRNA,tail,capsid,integrase,protease,head attL 2259357:2259375|attR 2296856:2296874
DBSCAN-SWA_8 2714700 : 2788503 89 Escherichia_phage(23.73%) coat,tRNA,terminase,lysis,tail,integrase,head attL 2736441:2736487|attR 2785575:2785621
DBSCAN-SWA_9 2998039 : 3009694 12 Enterobacteria_phage(66.67%) integrase attL 2998489:2998503|attR 3021547:3021561
DBSCAN-SWA_10 4557711 : 4627090 74 uncultured_Caudovirales_phage(61.11%) head,portal,tRNA,terminase,tail,capsid,integrase,protease attL 4575320:4575337|attR 4591315:4591332
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP027054
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 9591 : 58169 47 Escherichia_phage(22.22%) integrase,protease,transposase attL 17014:17029|attR 61642:61657
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP027056
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3721 : 37605 33 Escherichia_phage(25.0%) transposase,integrase attL 12039:12056|attR 46803:46820
DBSCAN-SWA_2 42180 : 54272 13 Enterobacteria_phage(25.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. CP027057
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 2435 4 Escherichia_phage(25.0%) NA NA
DBSCAN-SWA_2 7035 : 7551 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_3 26182 : 30353 3 Moraxella_phage(33.33%) NA NA
DBSCAN-SWA_4 35517 : 42550 5 Escherichia_phage(75.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. CP027055
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 108021 : 162713 61 Salmonella_phage(17.39%) head,integrase,transposase,tail attL 146784:146843|attR 166104:167433
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage