CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP016857	Staphylococcus aureus subsp. aureus strain 1971.C01 plasmid p1971.C01c, complete sequence	0 crisprs	csa3	0	0	1
CP025486	Staphylococcus aureus subsp. aureus strain 1971.C01 plasmid p1971.C01a	0 crisprs	NA	0	0	0
CP016858	Staphylococcus aureus subsp. aureus strain 1971.C01 chromosome, complete genome	9 crisprs	cas3,WYL,csa3,DEDDh,DinG	11	4	10
CP016859	Staphylococcus aureus subsp. aureus strain 1971.C01 plasmid p1971.C01b, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10133 : 17147

Staphylococcus_phage(50.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG21373.1\|10133_10712_+	HTH domain-containing protein	A0A0A7NPV4	Enterobacteria_phage	4.9e-42	51.7
AVG21374.1\|10934_11120_-	hypothetical protein	NA	NA	NA	NA
AOH60231.1\|11381_12056_+\|transposase	IS6-like element IS257 family transposase	A0A0N9SKD3	Staphylococcus_phage	6.8e-128	99.6
AOH60240.1\|12385_13180_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
AOH60233.2\|13272_13803_-	streptothricin N-acetyltransferase Sat4	A0A1B0RXL7	Streptococcus_phage	4.3e-85	94.4
AOH60253.1\|14575_15250_-\|transposase	IS6 family transposase	A0A0N9SKD3	Staphylococcus_phage	2.6e-127	98.7
AOH60243.1\|15279_15483_-	UDP kinase	NA	NA	NA	NA
AOH60237.2\|15496_16234_-	ABC transporter permease	NA	NA	NA	NA
AVG21375.1\|16226_17147_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-41	42.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP016858

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CRISPR-Cas detection and classification

Crispr_ID: CP016858_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016858_1

425823-426131

Orphan

Consensus_repeat	Method
CCAACTTGCANNNTNTNNNNAGCTGNCTTT	CRT
CCAGCCTCTGTGTTGGGGCCCCG	CRISPRCasFinder

4 spacers

The CRISPR arrays of CP016858_1

>merge|CP016858|1|425823-426131|CRT,CRISPRCasFinder
CCAAATTGAAATTATCCTACTGCTGTCTTTTTGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACACTATTGTAAGCTGACTTTTCGCCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGAGGAGCTAATTTCTCTGTGTCGGGGCTCCACCCCAACTTGCACACTATTGTAAGCTGACTTTCCGCCAGCCTCTGTGTTGGGGCCCCGCCAACTTGCACACTATTGTAAGCTGACTTTCCACCAGCCTCTGTGTTGGGGCCCCG

>CP016858|1|1|425823-426105|CRT
CCAAATTGAAATTATCCTACTGCTGTCTTT	TTGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACC
CCAACTTGCACACTATTGTAAGCTGACTTT	TCGCCAGCTTCTGTGTTGGGGCCCCG
CCAACTTGCATTGTCTGTAGAAATTGAGGA	GCTAATTTCTCTGTGTCGGGGCTCCACC
CCAACTTGCACACTATTGTAAGCTGACTTT	CCGCCAGCCTCTGTGTTGGGGCCCCG
CCAACTTGCACACTATTGTAAGCTGACTTT

>CP016858|1|1|426053-426131|CRISPRCasFinder
CCAGCCTCTGTGTTGGGGCCCCG	CCAACTTGCACACTATTGTAAGCTGACTTTCCA
CCAGCCTCTGTGTTGGGGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
CP016858.2\|AOH62973.1\|427608_428799_-\|Ornithine-aminotransferase-2	unknown	unknown	gnl\|CDD\|179736
CP016858.2\|AOH60719.1\|411015_414669_-\|ATP-dependent-helicase/nuclease-subunit-A	unknown	unknown	gnl\|CDD\|274299
CP016858.2\|AOH62886.1\|423202_424582_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
CP016858.2\|AOH62332.2\|434957_435386_+\|Na+/H+-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|183602
CP016858.2\|AOH62324.1\|420325_421657_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504
CP016858.2\|AOH61060.1\|432045_432429_+\|kinase	unknown	unknown	gnl\|CDD\|378054
CP016858.2\|AOH61683.1\|429106_430234_-\|NADH-dependent-flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240086
CP016858.2\|AOH62091.1\|409947_410850_-\|FAA-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
CP016858.2\|AOH61655.2\|435719_437216_+\|Na+/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|181085
CP016858.2\|AOH61204.1\|418896_419421_-\|inactive-signal-peptidase-IA	unknown	unknown	gnl\|CDD\|274044
CP016858.2\|AOH60792.1\|419425_420001_-\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
CP016858.2\|AOH62516.1\|414669_418146_-\|ATP-dependent-helicase/deoxyribonuclease-subunit-B	unknown	unknown	gnl\|CDD\|213736
CP016858.2\|AOH60866.1\|426255_427500_-\|NAD-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
CP016858.2\|AOH62857.1\|431388_431982_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238908
CP016858.2\|AOH62698.1\|422007_423213_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
CP016858.2\|AOH62866.2\|424823_425753_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
CP016858.2\|AOH60349.1\|432559_434965_+\|Na+/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237155
CP016858.2\|AOH61277.1\|418305_418881_-\|signal-peptidase-IB	unknown	unknown	gnl\|CDD\|274044
CP016858.2\|AOH60293.2\|430595_430973_-\|general-stress-protein	unknown	unknown	gnl\|CDD\|224023
CP016858.2\|AOH62894.2\|435397_435727_+\|Na(+)/H(+)-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|181497

Protein	Function_ID	Function_description	E-value
CP016858.2\|AOH62973.1\|427608_428799_-\|Ornithine-aminotransferase-2	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	0
CP016858.2\|AOH60719.1\|411015_414669_-\|ATP-dependent-helicase/nuclease-subunit-A	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
CP016858.2\|AOH62886.1\|423202_424582_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
CP016858.2\|AOH62332.2\|434957_435386_+\|Na+/H+-antiporter-subunit-B	gnl\|CDD\|183602	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B.	9.17513e-61
CP016858.2\|AOH62324.1\|420325_421657_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0
CP016858.2\|AOH61060.1\|432045_432429_+\|kinase	gnl\|CDD\|378054	pfam08810, KapB, Kinase associated protein B. This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.	1.89892e-52
CP016858.2\|AOH61683.1\|429106_430234_-\|NADH-dependent-flavin-oxidoreductase	gnl\|CDD\|240086	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	0
CP016858.2\|AOH62091.1\|409947_410850_-\|FAA-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.0042e-87
CP016858.2\|AOH61655.2\|435719_437216_+\|Na+/H+-antiporter-subunit-D	gnl\|CDD\|181085	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
CP016858.2\|AOH61204.1\|418896_419421_-\|inactive-signal-peptidase-IA	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.63848e-48
CP016858.2\|AOH60792.1\|419425_420001_-\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.01759e-40
CP016858.2\|AOH62516.1\|414669_418146_-\|ATP-dependent-helicase/deoxyribonuclease-subunit-B	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
CP016858.2\|AOH60866.1\|426255_427500_-\|NAD-specific-glutamate-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
CP016858.2\|AOH62857.1\|431388_431982_-\|peptidylprolyl-isomerase	gnl\|CDD\|238908	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.	3.93388e-65
CP016858.2\|AOH62698.1\|422007_423213_+\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
CP016858.2\|AOH62866.2\|424823_425753_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	5.11302e-151
CP016858.2\|AOH60349.1\|432559_434965_+\|Na+/H+-antiporter-subunit-A	gnl\|CDD\|237155	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed.	0
CP016858.2\|AOH61277.1\|418305_418881_-\|signal-peptidase-IB	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	4.05406e-53
CP016858.2\|AOH60293.2\|430595_430973_-\|general-stress-protein	gnl\|CDD\|224023	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].	3.22125e-44
CP016858.2\|AOH62894.2\|435397_435727_+\|Na(+)/H(+)-antiporter-subunit-C	gnl\|CDD\|181497	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed.	3.20641e-61

>CP016858.2|AOH62866.2|424823_425753_+|glycerophosphodiester-phosphodiesterase
MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNQIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYKEVIK
>CP016858.2|AOH62886.1|423202_424582_+|argininosuccinate-lyase
MSNKAWGGRFEVQPEEWVDDFNASITFDQTLIDQDIEGSIAHATMLANQGIISQQDSEQIIQGLKSIQHDYHQDQIQFSASLEDIHLNIEHELIKRIGDAGGKLHTGRSRNDQVATDMHLYTKKQVQDIIALIKSLQSVIVDIASNNVDTIMPSYTHLQRAQPISFAHHIMTYFWMLQRDQQRFEDSLKRIDINPLGAAALSGTTYPIDRHETTALLNFGSLYENSLDAVSDRDYIIETLHNISLTMVHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRTTGHLMSMLMTLKGLPLAYNKDMQEDKEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLATYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQLDVAKQLLSQ
>CP016858.2|AOH62698.1|422007_423213_+|argininosuccinate-synthase
MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGGYSNEQ
>CP016858.2|AOH62324.1|420325_421657_-|glucose-6-phosphate-isomerase
MTHIQLDFSKTLEFFGEHELKQQQEIVKSIHKTIHEGTGAGSDFLGWVDLPVDYDKEEFSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYSVLTAVGLLPIATAGINIEAMMIGAAKAREELSSDKLEENIAYQYATIRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL
>CP016858.2|AOH60792.1|419425_420001_-|TVP38/TMEM64-family-protein
MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVNTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTHPLRGILMLVVLVVFWIVGKKLEQHFMGSKKE
>CP016858.2|AOH61204.1|418896_419421_-|inactive-signal-peptidase-IA
MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDQDNNKHDSRQFGLIDKKDIIGNVSLRYYPFSKWTVQFKS
>CP016858.2|AOH61277.1|418305_418881_-|signal-peptidase-IB
MKKEILEWIISIAVAFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIVGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWPFSEFKHNFNPENTKN
>CP016858.2|AOH62516.1|414669_418146_-|ATP-dependent-helicase/deoxyribonuclease-subunit-B
MTLHAYLGRAGTGKSTKMLTEIKQKMKADPLGDPIILIAPTQSTFQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQEQQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYREFEQRIQNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAKSVTIILTTDGNHDQFSLFRKPSEVLRHIEEIANELNISIERQYFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFKLSGLVNADQTVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFIETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQNININDEFGGEQ
>CP016858.2|AOH60719.1|411015_414669_-|ATP-dependent-helicase/nuclease-subunit-A
MTIPEKPQGVIWTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPKNWLDQLVTPYEEEAQQAQLIQLLTDLSKVFITAAYDALNKAYDLFSMMDSVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL
>CP016858.2|AOH62091.1|409947_410850_-|FAA-hydrolase-family-protein
MKFLSFKYNDKTSYGVKVKREDAVWDLTQVFADFAEGDFHPKTLLAGLQQNHTLDFQEQVRKAVVAAEDSGKAEDYKISFNDIEFLPPVTPPNNVIAFGRNYKDHANELNHEVEKLYVFTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGGCPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMQPPKFLQPGDEVKVTIDNIGTLTTYIAK
>CP016858.2|AOH60866.1|426255_427500_-|NAD-specific-glutamate-dehydrogenase
MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVDEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGWA
>CP016858.2|AOH62973.1|427608_428799_-|Ornithine-aminotransferase-2
MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRWAYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALKAAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFATDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAALDVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
>CP016858.2|AOH61683.1|429106_430234_-|NADH-dependent-flavin-oxidoreductase
MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSNDDGTISDVELPYIEKRSQDVGITINAASNVSDVGKAFPGQPSIAHDSNIEGLKRLATAMKKNGAKALVQIHHGGAQALPELTPDGDVVAPSPISLKSFGQKQEHSAREMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWANQYKFPVAVIEEVLKAKEAYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK
>CP016858.2|AOH60293.2|430595_430973_-|general-stress-protein
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND
>CP016858.2|AOH62857.1|431388_431982_-|peptidylprolyl-isomerase
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
>CP016858.2|AOH61060.1|432045_432429_+|kinase
MKLYRFSHKTGSYGVTIVEENGDDVLVKVEQVIKHPKQGDLHNPTETEGVFFHDRKALSHFEKRYTKRSQLRDFNVDVLRYEDSLQQAITDLETKLKAQQTKHAEMSLASLARLKEDYSLQYKENFK
>CP016858.2|AOH60349.1|432559_434965_+|Na+/H+-antiporter-subunit-A
MSLLHIAVILPLIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLLLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSLLGGIILLAIPTQSFSIQYMIQHASEIQNSPFFIFAMILIMIGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWVWTVTLVGLITLFWASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLETTFTASQANLFSVDTLGYLFPIIGIVGSVFTFVYSIKFIMHIFFGQYKPEQLPKKAHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSINHTVIDDVEFHMFHGLTPAFLSTLVIYILGILLIVTFSYWVKLLQRQPGKLTFNYWYNRSANVIPNYSEKMTNSYVTDYSRNNLVIIFGALILLTFVTIFSVPFNINFKDVSPIRIFEVCIVILLLSAAFLILFAKSRLFSIIMLSAVGYAVSVLFIFFKAPDLALTQFVVESISTALFLLCFYHLPNLNRYNEKRSFQLTNALIAGGVGLSVIIIGLIAYGNRHFESISKFYQEHVYDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLAVYTMIKLRKKRQTQGNEVKNHE
>CP016858.2|AOH62332.2|434957_435386_+|Na+/H+-antiporter-subunit-B
MNRQQNDLILQFAAVIIFFMVMVFGFSLFLAGHYTPGGGFVGGLLFASSLVIITIAFDIETMRKIFPLDFKILIGIGLVFCIATPIASWFLGKNFFTHVTFDIPLFILEPVHMTTAVFFDFGVLCAVVGTVMTIIISIGENE
>CP016858.2|AOH62894.2|435397_435727_+|Na(+)/H(+)-antiporter-subunit-C
MIFVSGILTAISVYLVLSKSLIRIVMGTTLLTHAANLFLITMGGLKHGTVPIYEANVKSYVDPIPQALILTAIVIAFATTAFFLVLAFRTYKELGTDNVESMKGVPEDD
>CP016858.2|AOH61655.2|435719_437216_+|Na+/H+-antiporter-subunit-D
MIESNMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANVVKHGPIRVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVYFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAVVITVLYGLSADYLYPMVKAGAETFYNPSTYVKAVLGGK

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Crispr_ID: CP016858_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016858_2

488835-488916

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP016858_2

>merge|CP016858|2|488835-488916|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGG

>CP016858|2|2|488835-488916|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP016858.2\|AOH61425.1\|487602_487899_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP016858.2\|AOH60398.1\|490614_490971_-\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
CP016858.2\|AOH60626.1\|486327_487353_-\|methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058
CP016858.2\|AOH61485.1\|493891_494386_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596
CP016858.2\|AOH61157.1\|487891_488278_-\|topiosmerase	unknown	unknown	gnl\|CDD\|224572
CP016858.2\|AOH60754.2\|485639_486335_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
CP016858.2\|AOH62008.1\|492206_492923_-\|3-dehydroquinase	unknown	unknown	gnl\|CDD\|184156
CP016858.2\|AOH62756.1\|490076_490457_-\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|234918
CP016858.2\|AOH60806.1\|491114_491435_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP016858.2\|AOH62929.1\|493070_493493_+\|organic-hydroperoxide-reductase-OsmC/OhrA	unknown	unknown	gnl\|CDD\|274649
CP016858.2\|AOH61025.1\|489019_489898_-\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|226395
CP016858.2\|AVG21006.1\|488487_488601_-\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH60290.1\|483437_484658_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP016858.2\|AOH61327.1\|481394_481853_+\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|368753
CP016858.2\|AOH60678.1\|482621_483350_+\|exotoxin	unknown	unknown	gnl\|CDD\|280949
CP016858.2\|AOH61077.2\|484800_485622_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
CP016858.2\|AOH61889.1\|489899_490013_-\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61521.1\|494540_495158_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
CP016858.2\|AOH62548.1\|491584_492124_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
CP016858.2\|AVG21005.1\|481869_482598_+\|exotoxin	unknown	unknown	gnl\|CDD\|280949

Protein	Function_ID	Function_description	E-value
CP016858.2\|AOH61425.1\|487602_487899_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP016858.2\|AOH60398.1\|490614_490971_-\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
CP016858.2\|AOH60626.1\|486327_487353_-\|methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
CP016858.2\|AOH61485.1\|493891_494386_+\|N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
CP016858.2\|AOH61157.1\|487891_488278_-\|topiosmerase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
CP016858.2\|AOH60754.2\|485639_486335_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
CP016858.2\|AOH62008.1\|492206_492923_-\|3-dehydroquinase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	1.26721e-148
CP016858.2\|AOH62756.1\|490076_490457_-\|glycine-cleavage-system-protein-H	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.81086e-68
CP016858.2\|AOH60806.1\|491114_491435_+\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24
CP016858.2\|AOH62929.1\|493070_493493_+\|organic-hydroperoxide-reductase-OsmC/OhrA	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP016858.2\|AOH61025.1\|489019_489898_-\|DUF1963-domain-containing-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	9.06932e-75
CP016858.2\|AOH60290.1\|483437_484658_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	9.89414e-38
CP016858.2\|AOH61327.1\|481394_481853_+\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	0.00223487
CP016858.2\|AOH60678.1\|482621_483350_+\|exotoxin	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	1.03678e-24
CP016858.2\|AOH61077.2\|484800_485622_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112
CP016858.2\|AOH61521.1\|494540_495158_+\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	9.12336e-62
CP016858.2\|AOH62548.1\|491584_492124_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	1.47647e-49
CP016858.2\|AVG21005.1\|481869_482598_+\|exotoxin	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	1.46097e-28

>CP016858.2|AVG21006.1|488487_488601_-|hypothetical-protein
MLGPRQLAHYCKLTYHQLLCWGPAIIEKFVIGVFSFG
>CP016858.2|AOH61157.1|487891_488278_-|topiosmerase
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP016858.2|AOH61425.1|487602_487899_-|thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP016858.2|AOH60626.1|486327_487353_-|methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP016858.2|AOH60754.2|485639_486335_-|ABC-transporter-permease
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>CP016858.2|AOH61077.2|484800_485622_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP016858.2|AOH60290.1|483437_484658_+|site-specific-integrase
MWLEKFKNKNKETKYRYYEKYKDPLTAKWRRVSVVLNKNGKQSQKEAQRLLNERIEEKLNDKKPTTLKSLTFHVACDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIESIIKDINTKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
>CP016858.2|AOH60678.1|482621_483350_+|exotoxin
MKKLIVIILINIITLSVSNSASAQGDIGIDNLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNVSYDLISESKDFNKFSNFKGKKLDVFGISYNGQCNNKYIYGGVTATNEYLDKPRNIPINIWINGNHKTISTNKVSTNKKFVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKETI
>CP016858.2|AVG21005.1|481869_482598_+|exotoxin
MNKIFRVLTVSLFFFTFLIKNNLAYADVGVINLRNFYTNYQPETLQGVSSGNFSTSHQLEYIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIPINLWVNGKQNTISTDEVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSKFNSGFNKGKITFHLNNETSFTYDLFYTGTGQAESFLKIYNDNKTIDAENFHLDVEISYEKTE
>CP016858.2|AOH61327.1|481394_481853_+|ImmA/IrrE-family-metallo-endopeptidase
MYLYEKMVIENKEIPIDDGKSLGNFEGLYDNGVILINKNLSETRKAEVLYEELAHHKLTYGNILDQSKWINRKFENYARRHGFISAVPLREIVEAYNYGVRNLYELSEYLQLSEKYILEAIEQYKKIYGIGTHYGEYSITFEPLRVFKYKEI
>CP016858.2|AOH61025.1|489019_489898_-|DUF1963-domain-containing-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLKYFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP016858.2|AOH61889.1|489899_490013_-|hypothetical-protein
MKEKLLGTIIWSIATFYYSRMMEIMNLAILKIKIGGS
>CP016858.2|AOH62756.1|490076_490457_-|glycine-cleavage-system-protein-H
MAVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE
>CP016858.2|AOH60398.1|490614_490971_-|arsenate-reductase-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP016858.2|AOH60806.1|491114_491435_+|thioredoxin
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP016858.2|AOH62548.1|491584_492124_-|nitroreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEGDMPKAPRKNRNLITLY
>CP016858.2|AOH62008.1|492206_492923_-|3-dehydroquinase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGVPQAPGQIDVTDLKAQVTLY
>CP016858.2|AOH62929.1|493070_493493_+|organic-hydroperoxide-reductase-OsmC/OhrA
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP016858.2|AOH61485.1|493891_494386_+|N-acetyltransferase
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>CP016858.2|AOH61521.1|494540_495158_+|amino-acid-transporter
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGETQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF

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Crispr_ID: CP016858_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016858_3

524784-524876

Orphan

Consensus_repeat	Method
AGTTGGGGTGGGGCCCCAACATAGTGAAATTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP016858_3

>merge|CP016858|3|524784-524876|CRISPRCasFinder
AGTTGGGGTGGGGCCCCAACATAGTGAAATTGGCTCCTCCCAATTTCTACAGGCAATGCAAGTTGGGGTGGGGCCCCAACATAGAGAAATTGG

>CP016858|3|3|524784-524876|CRISPRCasFinder
AGTTGGGGTGGGGCCCCAACATAGTGAAATTGG	CTCCTCCCAATTTCTACAGGCAATGCA
AGTTGGGGTGGGGCCCCAACATAGAGAAATTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP016858.2\|AOH61740.1\|517111_518416_-\|enolase	unknown	unknown	gnl\|CDD\|234617
CP016858.2\|AOH62670.1\|532587_533523_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP016858.2\|AOH61197.1\|518545_520063_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
CP016858.2\|AOH62504.1\|527589_528177_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
CP016858.2\|AOH62554.1\|523340_524354_-\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
CP016858.2\|AOH62237.1\|520065_520827_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
CP016858.2\|AOH60485.1\|515157_515898_-\|carboxylesterase	unknown	unknown	gnl\|CDD\|224561
CP016858.2\|AOH62640.1\|512751_515124_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
CP016858.2\|AOH61030.1\|533589_535029_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276808
CP016858.2\|AOH60399.1\|520948_522139_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
CP016858.2\|AOH63130.1\|516313_516772_-\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61992.1\|530796_531708_-\|RNase-adaptor-protein-RapZ	unknown	unknown	gnl\|CDD\|224574
CP016858.2\|AOH61198.2\|528750_529695_-\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
CP016858.2\|AVG21013.1\|535036_535522_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
CP016858.2\|AOH61216.1\|516013_516247_-\|protein-export-membrane-protein-SecG	unknown	unknown	gnl\|CDD\|224233
CP016858.2\|AOH61892.1\|525113_525743_-\|DUF4887-domain-containing-protein	unknown	unknown	gnl\|CDD\|234750
CP016858.2\|AOH61073.1\|526444_527347_+\|epimerase	unknown	unknown	gnl\|CDD\|224015
CP016858.2\|AOH62557.1\|522277_523288_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
CP016858.2\|AOH62934.1\|529804_530800_-\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
CP016858.2\|AVG21012.1\|532051_532261_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP016858.2\|AOH61740.1\|517111_518416_-\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP016858.2\|AOH62670.1\|532587_533523_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP016858.2\|AOH61197.1\|518545_520063_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
CP016858.2\|AOH62504.1\|527589_528177_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP016858.2\|AOH62554.1\|523340_524354_-\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92
CP016858.2\|AOH62237.1\|520065_520827_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.84083e-146
CP016858.2\|AOH60485.1\|515157_515898_-\|carboxylesterase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	9.08697e-131
CP016858.2\|AOH62640.1\|512751_515124_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
CP016858.2\|AOH61030.1\|533589_535029_-\|hypothetical-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.28078e-06
CP016858.2\|AOH60399.1\|520948_522139_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
CP016858.2\|AOH61992.1\|530796_531708_-\|RNase-adaptor-protein-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
CP016858.2\|AOH61198.2\|528750_529695_-\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	2.25668e-152
CP016858.2\|AVG21013.1\|535036_535522_-\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
CP016858.2\|AOH61216.1\|516013_516247_-\|protein-export-membrane-protein-SecG	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	6.41939e-15
CP016858.2\|AOH61892.1\|525113_525743_-\|DUF4887-domain-containing-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	5.85535e-05
CP016858.2\|AOH61073.1\|526444_527347_+\|epimerase	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	4.94096e-153
CP016858.2\|AOH62557.1\|522277_523288_-\|aldehyde-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
CP016858.2\|AOH62934.1\|529804_530800_-\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172

>CP016858.2|AOH62554.1|523340_524354_-|sugar-binding-transcriptional-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>CP016858.2|AOH62557.1|522277_523288_-|aldehyde-dehydrogenase
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>CP016858.2|AOH60399.1|520948_522139_-|phosphoglycerate-kinase
MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDVLLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
>CP016858.2|AOH62237.1|520065_520827_-|triose-phosphate-isomerase
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK
>CP016858.2|AOH61197.1|518545_520063_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MAKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
>CP016858.2|AOH61740.1|517111_518416_-|enolase
MPIITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTGEHEAVELRDGDKSRYLGKGVTKAVENVNEIIAPEIIEGEFSVLDQVSIDKMMIALDGTPNKGKLGANAILGVSIAVARAAADLLGQPLYKYLGGFNGKQLPVPMMNIVNGGSHSDAPIAFQEFMILPVGATTFKESLRWGTEIFHNLKSILSKRGLETAVGDEGGFAPKFEGTEDAVETIIQAIEAAGYKPGEEVFLGFDCASSEFYENGVYDYSKFEGEHGAKRTAAEQVDYLEQLVDKYPIITIEDGMDENDWDGWKQLTERIGDRVQLVGDDLFVTNTEILAKGIENGIGNSILIKVNQIGTLTETFDAIEMAQKAGYTAVVSHRSGETEDTTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDELFETAKYDGIKSFYNLDK
>CP016858.2|AOH63130.1|516313_516772_-|hypothetical-protein
MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLNLTNQNTSDKAIDYILNSFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFTLINLSITIQAIKAAHGAYLTLPILIVIIGSVALAIYMLVVSIKRKSTFNR
>CP016858.2|AOH61216.1|516013_516247_-|protein-export-membrane-protein-SecG
MHTFLIVLLIIDCIALITVVLLQEGKSSGLSGAISGGAEQLFGKQKQRGVDLFLNRLTIILSILFFVLMICISYLGM
>CP016858.2|AOH60485.1|515157_515898_-|carboxylesterase
MQIKLPKPFFFEEGKRAVLLLHGFTGNSSDVRQLGRFLQKKGYTSYAPQYEGHAAPPDEILKSSPFVWFKDALDGYDYLVEQGYDEIVVAGLSLGGDFALKLSLNRDVKGIVTMCAPMGGKTEGAIYEGFLEYARNFKKYEGKDQETIDNEMDHFKPTETLKELSEALDTIKEQVDEVLDPILVIQAENDNMIDPQSANYIYDHVDSDDKNIKWYSESGHVITIDKEKEQVFEDIYQFLESLDWSE
>CP016858.2|AOH62640.1|512751_515124_-|ribonuclease-R
MNLKQSIEEIINQPEYEPMSVSDFQDALGLSSADSFRDLIKVLVELEQSGLIERTKTDRYQKKHSYRGQSKLIKGTLSQNKKGFAFLRPEDEDMEDIFIPPTKINRALDGDTVIVEIHQSKGEHKGKIEGEVKSIEKHSVTQVVGTYSEARHFGFVIPDDKRIMQDIFIPKGQSLGAVDGHKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDEVLQEAEAVPDHIENTEIKGRHDLRDELTITIDGADAKDLDDAISVKKLANGNTQLTVSIADVSYYVTEGSALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPNVDRLTLSCRMEIDASGRVVKHEIFDSVIHSDYRMTYDAVNQIITEKDPNIREQYNEITPMLDLAQDLSNRLIQMRKRRGEIDFDISEAKVLVNEDGIPTDVQLRQRGEGERLIESFMLIANETVAEHFSKLDVPFIYRVHEQPKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQQAHYDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLPELAEHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHIANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPLPKNDRSQRPARGKTIQAKTRGKSLDKSKSDDKGRKKKGKQRKGKNQRNNDKSGNSKHKPFYKDKSVKKKARRKKK
>CP016858.2|AOH61892.1|525113_525743_-|DUF4887-domain-containing-protein
MSNQNYDYNKNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQANQYQQLPQQNQYQYVPPQQQAPTKQRPAKEENDDKASKDESKDKDDKASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQAPQQNSQSTTNKQNNANDK
>CP016858.2|AOH61073.1|526444_527347_+|epimerase
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKALFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE
>CP016858.2|AOH62504.1|527589_528177_-|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>CP016858.2|AOH61198.2|528750_529695_-|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVEEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP016858.2|AOH62934.1|529804_530800_-|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP016858.2|AOH61992.1|530796_531708_-|RNase-adaptor-protein-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP016858.2|AVG21012.1|532051_532261_+|hypothetical-protein
MGCGPQHREIGFPISTDNASWRGPNTEADEKSAYNNVQVGGAPTQKLAESQLTIMCKLGWDNDKVILFL
>CP016858.2|AOH62670.1|532587_533523_-|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP016858.2|AOH61030.1|533589_535029_-|hypothetical-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDMEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDVMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP016858.2|AVG21013.1|535036_535522_-|acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR

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Click the colored protein region to show detailed information

Crispr_ID: CP016858_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016858_5

707944-708036

Orphan

Consensus_repeat	Method
TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP016858_5

>merge|CP016858|5|707944-708036|CRISPRCasFinder
TAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTTTTATGCAGTTGTGCCTTAGCATCCAACTGCGTTCCTCTTCACCTTTAG

>CP016858|5|5|707944-708036|CRISPRCasFinder
TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	CGATTAGAGGCTTTTATGCAGTTGTGCCT
TAGCATCCAACTGCGTTCCTCTTCACCTTTAG

Protein	Signature genes	Signature genes Name	Protein_function
CP016858.2\|AVG21034.1\|711443_711551_-\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AVG21032.1\|698977_699514_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225382
CP016858.2\|AOH62964.2\|713683_714979_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
CP016858.2\|AVG21033.1\|709024_709270_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61347.1\|698493_698997_+\|transposase	unknown	unknown	gnl\|CDD\|225382
CP016858.2\|AOH62245.2\|710934_711318_-\|DUF1934-domain-containing-protein	unknown	unknown	gnl\|CDD\|226896
CP016858.2\|AOH61158.1\|703689_704196_-\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61711.1\|704331_705132_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP016858.2\|AOH61273.2\|708253_708889_-\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
CP016858.2\|AOH63085.1\|701229_701604_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
CP016858.2\|AOH61621.2\|706987_707815_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
CP016858.2\|AOH63087.1\|705115_705835_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
CP016858.2\|AOH60417.1\|702811_703528_-\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH62471.2\|715018_715495_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP016858.2\|AOH60549.2\|713134_713656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378039
CP016858.2\|AOH61319.1\|715663_716200_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
CP016858.2\|AOH60768.1\|701854_702643_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP016858.2\|AOH61261.1\|709276_710938_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
CP016858.2\|AOH62920.2\|705889_706840_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP016858.2\|AOH60451.1\|711625_712636_-\|zinc-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|181842

Protein	Function_ID	Function_description	E-value
CP016858.2\|AVG21032.1\|698977_699514_+\|hypothetical-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	4.55456e-53
CP016858.2\|AOH61347.1\|698493_698997_+\|transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.373e-09
CP016858.2\|AOH62245.2\|710934_711318_-\|DUF1934-domain-containing-protein	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	9.50091e-54
CP016858.2\|AOH62964.2\|713683_714979_-\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.70707e-150
CP016858.2\|AOH61711.1\|704331_705132_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.17592e-26
CP016858.2\|AOH61273.2\|708253_708889_-\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	3.98158e-90
CP016858.2\|AOH61261.1\|709276_710938_-\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
CP016858.2\|AOH61621.2\|706987_707815_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.32108e-72
CP016858.2\|AOH63087.1\|705115_705835_-\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.6864e-38
CP016858.2\|AOH60451.1\|711625_712636_-\|zinc-dependent-alcohol-dehydrogenase	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
CP016858.2\|AOH62471.2\|715018_715495_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13315e-11
CP016858.2\|AOH60549.2\|713134_713656_-\|hypothetical-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	8.7406e-98
CP016858.2\|AOH61319.1\|715663_716200_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.16348e-26
CP016858.2\|AOH60768.1\|701854_702643_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.55978e-34
CP016858.2\|AOH63085.1\|701229_701604_+\|transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26
CP016858.2\|AOH62920.2\|705889_706840_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.19191e-48

>CP016858.2|AOH61621.2|706987_707815_-|ABC-transporter-substrate-binding-protein
MKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>CP016858.2|AOH62920.2|705889_706840_-|iron-ABC-transporter-permease
MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVTGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>CP016858.2|AOH63087.1|705115_705835_-|HAD-family-hydrolase
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>CP016858.2|AOH61711.1|704331_705132_-|alpha/beta-hydrolase
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAELAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVELLKYLYIEEVAFVCHEMGGIIGADISVRYPEFTSSLTLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTAAFINKHHDEKHV
>CP016858.2|AOH61158.1|703689_704196_-|hypothetical-protein
MKKLLTASIIACSVVMGVGLVNTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>CP016858.2|AOH60417.1|702811_703528_-|hypothetical-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>CP016858.2|AOH60768.1|701854_702643_-|alpha/beta-hydrolase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLKFLKSVS
>CP016858.2|AOH63085.1|701229_701604_+|transcriptional-regulator
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>CP016858.2|AVG21032.1|698977_699514_+|hypothetical-protein
MGSKSINNREEFGHYEIDTVWSVRPSTYCLLTIIERKTRYLYASRLNTRKSNVVCNEIINIMKPLLPKSITMDRGKEFALFEEIEDELNCSIYFSDLGCPYQRGSIENANGLLRQYYPKGTDFANITQKSLDEAVKQINARPRMIFDYKSSEEMLKYHVSTQNCEPILNDCVRHEPVN
>CP016858.2|AOH61347.1|698493_698997_+|transposase
MKKRKKRKELDYKTRLAIAKYLNDGLNIIQISKILGRDDAVLYREVNKRSVDGVYNPLLAEEDAIKSRSISDEQVAKRRRLNDETKAYIEEKLSLKWSPRQIASQIEKDTGYYISYPTIYRYIRNGLVKVDVKRDMRQAGKKYNKSSEKRGKLDVGSRVIKYRLKKY
>CP016858.2|AOH61273.2|708253_708889_-|endonuclease-III-domain-containing-protein
MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>CP016858.2|AVG21033.1|709024_709270_+|hypothetical-protein
MTRIEKSLLQANFRSVNYCHYNFVEHRTLIYVSGSLMQLCRASNCVPLNLIHILSIPQYVTYLKKHSNTKYLSRNSTLECI
>CP016858.2|AOH61261.1|709276_710938_-|arginine--tRNA-ligase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVTAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>CP016858.2|AOH62245.2|710934_711318_-|DUF1934-domain-containing-protein
MLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>CP016858.2|AVG21034.1|711443_711551_-|hypothetical-protein
MKDSENLVFFGFEVLFVFYKMAYIYEALIKYGIVN
>CP016858.2|AOH60451.1|711625_712636_-|zinc-dependent-alcohol-dehydrogenase
MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>CP016858.2|AOH60549.2|713134_713656_-|hypothetical-protein
MEVISLSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKHSSDALHQAFN
>CP016858.2|AOH62964.2|713683_714979_-|HD-domain-containing-protein
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVAPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>CP016858.2|AOH62471.2|715018_715495_-|N-acetyltransferase
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKAF
>CP016858.2|AOH61319.1|715663_716200_-|flavodoxin-family-protein
MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ

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Click the colored protein region to show detailed information

Crispr_ID: CP016858_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016858_6

947125-947226

Orphan

Consensus_repeat	Method
CAAATTTAATACTCAATTCATATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP016858_6

>merge|CP016858|6|947125-947226|CRISPRCasFinder
CAAATTTAATACTCAATTCATATATAGCTTTGATTTAAAAACTGATTTTTATAAACCTATAGAACTGTAATTTACTTTCAAATTTAATACTCAATTCATAAA

>CP016858|6|6|947125-947226|CRISPRCasFinder
CAAATTTAATACTCAATTCATATA	TAGCTTTGATTTAAAAACTGATTTTTATAAACCTATAGAACTGTAATTTACTTT
CAAATTTAATACTCAATTCATAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP016858.2\|AOH62202.1\|944821_945229_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
CP016858.2\|AOH61798.1\|953353_953980_+\|NDxxF-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380196
CP016858.2\|AOH61547.1\|946151_947108_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
CP016858.2\|AOH60356.1\|954234_954618_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61275.1\|942462_943731_-\|purine-permease	unknown	unknown	gnl\|CDD\|274468
CP016858.2\|AOH61620.2\|952987_953281_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61115.1\|950800_951370_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
CP016858.2\|AOH60600.1\|951385_952909_+\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP016858.2\|AVG21062.1\|947433_947691_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61222.1\|949553_950309_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP016858.2\|AOH63063.1\|945371_946034_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61567.1\|948084_949473_+\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
CP016858.2\|AOH60640.1\|939392_940934_-\|GMP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|234614
CP016858.2\|AOH61406.1\|954683_955265_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
CP016858.2\|AOH60530.1\|937646_938351_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
CP016858.2\|AOH60327.1\|936975_937248_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225511
CP016858.2\|AOH60269.1\|943730_944309_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP016858.2\|AVG21063.1\|947898_948000_-\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH62873.1\|938743_939280_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61268.1\|940958_942425_-\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507

Protein	Function_ID	Function_description	E-value
CP016858.2\|AOH62202.1\|944821_945229_+\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.0219e-12
CP016858.2\|AOH61798.1\|953353_953980_+\|NDxxF-motif-lipoprotein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.67126e-71
CP016858.2\|AOH61547.1\|946151_947108_+\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.000748442
CP016858.2\|AOH61275.1\|942462_943731_-\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	2.75897e-170
CP016858.2\|AOH60269.1\|943730_944309_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
CP016858.2\|AOH60600.1\|951385_952909_+\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP016858.2\|AOH61222.1\|949553_950309_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	5.03864e-88
CP016858.2\|AOH61567.1\|948084_949473_+\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP016858.2\|AOH60640.1\|939392_940934_-\|GMP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
CP016858.2\|AOH61406.1\|954683_955265_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	7.98269e-49
CP016858.2\|AOH60530.1\|937646_938351_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	9.65175e-08
CP016858.2\|AOH60327.1\|936975_937248_+\|hypothetical-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.23077e-11
CP016858.2\|AOH61115.1\|950800_951370_+\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
CP016858.2\|AOH61268.1\|940958_942425_-\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0

>CP016858.2|AOH61547.1|946151_947108_+|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKALAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>CP016858.2|AOH63063.1|945371_946034_+|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>CP016858.2|AOH62202.1|944821_945229_+|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHQEVHENNSAYEEIDITHFAEASKGPKA
>CP016858.2|AOH60269.1|943730_944309_-|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>CP016858.2|AOH61275.1|942462_943731_-|purine-permease
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILLLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>CP016858.2|AOH61268.1|940958_942425_-|IMP-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP016858.2|AOH60640.1|939392_940934_-|GMP-synthase-(glutamine-hydrolyzing)
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCRGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP016858.2|AOH62873.1|938743_939280_+|hypothetical-protein
MHNNNEFNKKLKDFIGSDKRMALVKGYVNEYKLTTVLRALNNSDYTKGTIHTRSIGNLKQIVDNRIIPKNITQNTIFKLSNLTLEVNLYERNTIYHGDFAIYYPVESALIIETDTPRLINHINNNPVQKIFIITTNDWSFNTLELEKIVDETIIYDLKQEDPKQYEILYKNKHGKLPY
>CP016858.2|AOH60530.1|937646_938351_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYKSYSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALAQKYREIDIKLSTEDKKLLSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
>CP016858.2|AOH60327.1|936975_937248_+|hypothetical-protein
MTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI
>CP016858.2|AVG21062.1|947433_947691_+|hypothetical-protein
MLVTDESHKCTLIFTFTTNAFLLKQKYLFTVAFELPPAHTNTQKMLILIRQNFLQRVCSKRLFKVDHLLSFHSINMRLAIFIKPP
>CP016858.2|AVG21063.1|947898_948000_-|hypothetical-protein
MQLNVNMMKFDRWHKGICKQIVLNSVVIGGKGK
>CP016858.2|AOH61567.1|948084_949473_+|L-cystine-transporter
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLIYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFDSNDNAALTSH
>CP016858.2|AOH61222.1|949553_950309_-|NADPH-dependent-oxidoreductase
MSEHVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP016858.2|AOH61115.1|950800_951370_+|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP016858.2|AOH60600.1|951385_952909_+|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDDKSKELKDLLTEITDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKKLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMNTGEEHLLNLDGIFVQIGLLPNTSWLNDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP016858.2|AOH61620.2|952987_953281_+|hypothetical-protein
MINLIYTTRCAIMLKVCTSRKQINMKNDIEKEKYVNEIIMLLRTIPTSKLVQPIMQLFIDKAILNNVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>CP016858.2|AOH61798.1|953353_953980_+|NDxxF-motif-lipoprotein
MKKRLLLSTFLASTLILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP016858.2|AOH60356.1|954234_954618_+|hypothetical-protein
MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFTSTIITLAIGGKSVEKNDSP
>CP016858.2|AOH61406.1|954683_955265_-|histidine-phosphatase-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYDKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSRAEAVDLKVENCKPYIIE

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Crispr_ID: CP016858_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016858_7

1423121-1423294

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG	PILER-CR
TTACAATAATGTGCAAGTTGGCGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP016858_7

>merge|CP016858|7|1423121-1423294|PILER-CR,CRISPRCasFinder
TTGGCGAGGCCCCAACATAAAGAATTTCGAAAAGAAATTCTACAAACAATGCAAGTTGGCGGGGCCCCAACAAAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGGTTACAATAATGTGCAAGTTGGGGT

>CP016858|7|1|1423121-1423265|PILER-CR
TTGGCGAGGCCCCAACATAAAGAATTTCGAAAAGAAATTCTACAAACAATGCA	AGTTGGCGGGGCCCCAA
CAAAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCC	CAACATAGAAGCTGGC
GGAAAG

>CP016858|7|7|1423215-1423294|CRISPRCasFinder
TTACAATAATGTGCAAGTTGGCGG	GGCCCCAACATAGAAGCTGGCGGAAAGTCAGG
TTACAATAATGTGCAAGTTGGGGT

Protein	Signature genes	Signature genes Name	Protein_function
CP016858.2\|AOH60757.1\|1425377_1425683_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthesis-protein-IcaD	unknown	unknown	gnl\|CDD\|188447
CP016858.2\|AOH61583.2\|1419255_1419888_+\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	unknown	unknown	gnl\|CDD\|235067
CP016858.2\|AOH61099.1\|1414405_1415656_+\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|172308
CP016858.2\|AOH62036.1\|1430826_1431327_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
CP016858.2\|AOH62762.1\|1428456_1429119_+\|capsular-polysaccharide-biosynthesis-protein-CapA	unknown	unknown	gnl\|CDD\|226453
CP016858.2\|AVG21125.1\|1424508_1425381_-\|intercellular-adhesin-biosynthesis-polysaccharide-N-deacetylase	unknown	unknown	gnl\|CDD\|188448
CP016858.2\|AOH60567.1\|1431329_1431806_+\|peptide-methionine-(S)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|235497
CP016858.2\|AOH60330.1\|1418500_1419259_+\|imidazole-glycerol-phosphate-synthase-cyclase-subunit	unknown	unknown	gnl\|CDD\|234996
CP016858.2\|AOH61342.1\|1429824_1430592_+\|capsular-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226870
CP016858.2\|AOH61470.2\|1420980_1423023_+\|Lipase-1	unknown	unknown	gnl\|CDD\|224001
CP016858.2\|AOH60498.1\|1417228_1417807_+\|imidazole-glycerol-phosphate-synthase-subunit-HisH	unknown	unknown	gnl\|CDD\|171871
CP016858.2\|AOH63076.1\|1413798_1414413_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|172153
CP016858.2\|AOH60517.2\|1425646_1426885_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	unknown	unknown	gnl\|CDD\|274866
CP016858.2\|AVG21124.1\|1415671_1416685_+\|histidinol-phosphate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223157
CP016858.2\|AOH60614.1\|1417799_1418504_+\|1-(5-phosphoribosyl)-5-((5--phosphoribosylamino)methylideneamino)imidazole-4--carboxamide-isomerase	unknown	unknown	gnl\|CDD\|172156
CP016858.2\|AOH61781.2\|1423469_1424522_-\|poly-beta-1,6-N-acetyl-D-glucosamine-export-protein	unknown	unknown	gnl\|CDD\|226446
CP016858.2\|AOH62194.2\|1429135_1429828_+\|capsular-biosynthesis-protein	unknown	unknown	gnl\|CDD\|349772
CP016858.2\|AOH62869.2\|1420080_1420260_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61597.2\|1416653_1417232_+\|imidazoleglycerol-phosphate-dehydratase-HisB	unknown	unknown	gnl\|CDD\|153419
CP016858.2\|AOH62483.1\|1427048_1427609_+\|biofilm-operon-icaADBC-HTH-type-negative-transcriptional-regulator-IcaR	unknown	unknown	gnl\|CDD\|376089

Protein	Function_ID	Function_description	E-value
CP016858.2\|AOH60757.1\|1425377_1425683_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthesis-protein-IcaD	gnl\|CDD\|188447	TIGR03932, IcaD_partial, intracellular adhesion protein D. Members of this protein family are IcaD (intracellular adhesion protein D), which with catalytic subunit IcaA forms an N-acetylglucosaminyltransferase. In the absence of IcaC, this enzyme forms N-acetylglucosamine oligomers up to 20 in length. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	3.14464e-30
CP016858.2\|AOH61583.2\|1419255_1419888_+\|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE	gnl\|CDD\|235067	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE.	1.98613e-110
CP016858.2\|AOH61099.1\|1414405_1415656_+\|histidinol-dehydrogenase	gnl\|CDD\|172308	PRK13770, PRK13770, histidinol dehydrogenase; Provisional.	0
CP016858.2\|AOH62762.1\|1428456_1429119_+\|capsular-polysaccharide-biosynthesis-protein-CapA	gnl\|CDD\|226453	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane].	5.65863e-89
CP016858.2\|AVG21125.1\|1424508_1425381_-\|intercellular-adhesin-biosynthesis-polysaccharide-N-deacetylase	gnl\|CDD\|188448	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase. A common motif in bacterial biosynthesis of polysaccharide for export is modification that follows polymerization. This model describes a subfamily of polysaccharide N-deacetylases that acts on poly-beta-1,6-N-acetyl-D-glyscosamine as produced by Staphylococcus epidermidis and S. aureus. The end product in these species is designated polysaccharide intercellular adhesin (PIA), and this gene designated icaB (intercellular adhesion protein B). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Cellular processes, Pathogenesis].	1.37471e-149
CP016858.2\|AOH60567.1\|1431329_1431806_+\|peptide-methionine-(S)-S-oxide-reductase	gnl\|CDD\|235497	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase.	1.4924e-106
CP016858.2\|AOH60330.1\|1418500_1419259_+\|imidazole-glycerol-phosphate-synthase-cyclase-subunit	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	5.46363e-153
CP016858.2\|AOH61342.1\|1429824_1430592_+\|capsular-biosynthesis-protein	gnl\|CDD\|226870	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	2.38228e-144
CP016858.2\|AOH61470.2\|1420980_1423023_+\|Lipase-1	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	1.58472e-82
CP016858.2\|AOH60498.1\|1417228_1417807_+\|imidazole-glycerol-phosphate-synthase-subunit-HisH	gnl\|CDD\|171871	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional.	1.76981e-127
CP016858.2\|AOH63076.1\|1413798_1414413_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|172153	PRK13584, hisG, ATP phosphoribosyltransferase.	2.62287e-133
CP016858.2\|AOH60517.2\|1425646_1426885_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	gnl\|CDD\|274866	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase. Members of this protein family are biofilm-forming enzymes that polymerize N-acetyl-D-glucosamine residues in beta(1,6) linkage. One named members is IcaA (intercellular adhesin protein A), an enzyme that acts (with aid of subunit IcaD) in Polysaccharide Intercellular Adhesin (PIA) biosynthesis in Staphylococcus epidermis). The homologous member in E. coli is designated PgaC. Members are often encoded next to a polysaccharide deacetylase and involved in biofilm formation. Note that chitin, although also made from N-acetylglucosamine, is formed with beta-1,4 linkages.	0
CP016858.2\|AVG21124.1\|1415671_1416685_+\|histidinol-phosphate-aminotransferase-family-protein	gnl\|CDD\|223157	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism].	5.6943e-85
CP016858.2\|AOH60614.1\|1417799_1418504_+\|1-(5-phosphoribosyl)-5-((5--phosphoribosylamino)methylideneamino)imidazole-4--carboxamide-isomerase	gnl\|CDD\|172156	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional.	2.24553e-168
CP016858.2\|AOH61781.2\|1423469_1424522_-\|poly-beta-1,6-N-acetyl-D-glucosamine-export-protein	gnl\|CDD\|226446	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism].	5.4483e-115
CP016858.2\|AOH62194.2\|1429135_1429828_+\|capsular-biosynthesis-protein	gnl\|CDD\|349772	cd05387, BY-kinase, bacterial tyrosine-kinase. Bacterial tyrosine (BY)-kinases catalyze the autophosphorylation on a C-terminal tyrosine cluster and also phosphorylate endogenous protein substrates by using ATP as phosphoryl donor. Besides their capacity to function as tyrosine kinase, most of these proteins are also involved in the production and transport of exopolysaccharides. BY-kinases are involved in a number of physiological processes ranging from stress resistance to pathogenicity.	2.92039e-84
CP016858.2\|AOH62036.1\|1430826_1431327_+\|N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.30563e-13
CP016858.2\|AOH61597.2\|1416653_1417232_+\|imidazoleglycerol-phosphate-dehydratase-HisB	gnl\|CDD\|153419	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase. Imidazoleglycerol-phosphate dehydratase (IGPD; EC 4.2.1.19) catalyzes the dehydration of imidazole glycerol phosphate to imidazole acetol phosphate, the sixth step of histidine biosynthesis in plants and microorganisms where the histidine is synthesized de novo. There is an internal repeat in the protein domain that is related by pseudo-dyad symmetry, perhaps as a result of an ancient gene duplication. The apo-form of IGPD exists as a catalytically inactive trimer which, in the presence of specific divalent metal cations such as manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a biologically active high molecular weight metalloenzyme; a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active sites, and contains around 1.5 metal ions per monomer, each monomer contributing residues to three separate active sites. IGPD enzymes are monofunctional in fungi, plants, archaea and some eubacteria while they are encoded as bifunctional enzymes in other eubacteria, such that the enzyme is fused to histidinol-phosphate phosphatase, the penultimate enzyme of the histidine biosynthesis pathway. The histidine biosynthesis pathway is a potential target for development of herbicides, and IGPD is a target for the triazole phosphonate herbicides.	3.46935e-102
CP016858.2\|AOH62483.1\|1427048_1427609_+\|biofilm-operon-icaADBC-HTH-type-negative-transcriptional-regulator-IcaR	gnl\|CDD\|376089	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain. IcaR belongs to the tetracycline repressor (TetR) family of proteins, which are involved in a wide variety of gene regulations. It binds to a 42 bp region immediately upstream of the icaA gene. This entry represents the C-terminal domain which is involved in dimerization.	2.88245e-28

>CP016858.2|AOH61470.2|1420980_1423023_+|Lipase-1
MKSQNKYSIRKFSVGASSILIATLLFLSGGQAQAAEKQVNMGNSQEDTVTAQSIGDQQTRENANYQRENGVDEQQHTENLTKNLHNDKTISEENHRKTDDLNKDQLKDDKKSSLNNKNIQRDTTKNNNANPSDVNQGLEQAINDGKQSKVASQQQSKEADNSQDSNANNNLPSQSRIKEAPSLNKLDQTSQREIVNETEIEKVQPQQNNQANDKITNYNFNNEQEVKPQKDEKTLSVSDLKNNQKSPVEPTKDNDKKNGLNLLKSSAVATLPNKGTKELTAKAKDDQTNKVAKQGQYKNQDPIVLVHGFNGFTDDINPSVLAHYWGGNKMNIRQDLEENGYKAYEASISAFGSNYDRAVELYYYIKGGRVDYGAAHAAKYGHERYGKTYEGIYKDWKPGQKVHLVGHSMGGQTIRQLEELLRNGNREEIEYQKKHGGEISPLFKGNHDNMISSITTLGTPHNGTHASDLAGNEALVRQIVFDIGKMFGNKNSRVDFGLAQWGLKQKPNESYIDYVKRVKQSNLWKSKDNGFYDLTREGATDLNRKTSLNPNIVYKTYTGEATHKALNSDRQKADLNMFFPFVITGNLIGKATEKEWRENDGLVSVISSQHPFNQAYTKATDKIQKGIWQVTPTKHDWDHVDFVGQDSSDTVRTREELQDFWHHLADDLVKTEKLTDTKQA
>CP016858.2|AOH62869.2|1420080_1420260_+|hypothetical-protein
MKSKLSNSGIDVTVKDVEKYMNRYNEVMKGKNGEKAKELCLSLLPINIIVVFTFFVFIL
>CP016858.2|AOH61583.2|1419255_1419888_+|bifunctional-phosphoribosyl-AMP-cyclohydrolase/phosphoribosyl-ATP-diphosphatase-HisIE
MTKYKIDFSKGLVPAILQDNQTKQVLMLGYMNQEAFDKTIEDGVVCFYSRSKQRLWTKGETSGHTQRVKDIHVDCDNDTILIDVIPNGPTCHTGSQSCFNTEVPFSVQTLAQTVQDSAQSNNEKSYTKYLLTEGIEKITKKYGEEAFEVVIEAIKGDKKAFVSEVADELYHLFVLMHALGVDFSEIEAELARRHHKRNNFKGERQNIEQW
>CP016858.2|AOH60330.1|1418500_1419259_+|imidazole-glycerol-phosphate-synthase-cyclase-subunit
MIKKRIIPCLDVKDGRVVKGIQFKGLRDIGNPVDLAMYYNEAGADELVFLDISKTEEGHSLMLEVIEQTASRLFIPLTVGGGIQSLDDITQLLNHGADKVSLNSSALKNPQLIKQASDKFGRQCICIAIDSYYDPERKAHYCCTTGGKKMTNIKVYDWVQQVEQLGAGELLVTSMGHDGMKQGFDIEHLANIKSLVNIPIIASGGGGNAQHFVELFDQTDVSAGLAASILHDRETTVQSIKEVIRQGGIAVR
>CP016858.2|AOH60614.1|1417799_1418504_+|1-(5-phosphoribosyl)-5-((5--phosphoribosylamino)methylideneamino)imidazole-4--carboxamide-isomerase
MIELWPAIDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRRLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQASFWEGLK
>CP016858.2|AOH60498.1|1417228_1417807_+|imidazole-glycerol-phosphate-synthase-subunit-HisH
MIVIVDYGLGNISNVKRAIEHLGYEVVVSNTSKIIDQAETIILPGVGHFKDAMSEIKRLNLNAILAKNTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQTEYPVPHLGWNNLVSKHPMLNQDVYFVHSYQAPMSENVIAYAQYGADIPAIVQFNNYIGIQFHPEKSGTYGLQILRQAIQGGFIND
>CP016858.2|AOH61597.2|1416653_1417232_+|imidazoleglycerol-phosphate-dehydratase-HisB
MIYQKQRNTAETQLNISISDDQSPSHINTGVGFLNHMFTLFTFHSGLSLNIEAQGDIDVDDHHVTEDIGIVIGQLLLEMIKDKKHFVRYGTMYIPMDETLARVVVDISGRPYLSFNASLSKEKVGTFDTELVEEFFRAVVINARLTTHIDLIRGGNTHHEIEAIFKAFSRALGIALTATDDQRVPSSKGVIE
>CP016858.2|AVG21124.1|1415671_1416685_+|histidinol-phosphate-aminotransferase-family-protein
MIYIDKNESPVTPLDEKTMTSIISATPYNLYPDAAYEQFKEAYAKFYGLSPEQIIAGNGSDELIQKLMLIMPEGPALTLNPDFFMYQAYAAQVNREIAFVDAGSDLTFDLETILTKIDEVQPSFFIMSNPHNPSGKQFDTAFLTAIADKMKALNGYFVIDEAYLDYGTAYDVELAPHILRMRTLSKAFGIAGLRLGVLISTAGTIKHIQKIEHPYPLNVFTLNIATYIFRHREETRQFLTMQRQLAEQLKQIFDTHVADKMSVFPSNANFVLTKGSAAQQLGQYVYEQGFKPRFYDEPVMKGYVRYSIATASQLKQLEEIVKEWSAKYDLSKTTKHS
>CP016858.2|AOH61099.1|1414405_1415656_+|histidinol-dehydrogenase
MLNAQQFLNQFSLEAPLDESLYPIIRDICQEVKVHGDKALKMYNLTFDHTKTDHLEISHEQIKAAFDTLDEKTKQALQQSYERIKAYQESIKQTNQQLEESVECYEIYHPLESVGIYVPGGKASYPSTVLMTATLAQVAGVENIVVVTPPQPNGVSQEVLAACYITQVDQVFQVGGAQSIAALTYGTETIPKVDKIVGPGNQFVAYAKKYLFGQVGIDQIAGPTEIALIIDETADLDAIVYDVFAQAEHDELARTYAISEDAQVLKDLESRIAKALPNVDRYDIVSKSIANQHYLIHASNFDEACHVMNTIAPEHASIQTVNPQPYIEKVKYVGALFIGHYSPEVIGDYVAGPSHVLPTNRTARFTNGLSVNDFLTRNTVIHLSKDTFEQIADSAQHIAHVEALYNHQQSILIRQS
>CP016858.2|AOH63076.1|1413798_1414413_+|ATP-phosphoribosyltransferase
MLRIAIAKGRLMDSLINYLDVIEYTTLSETLKNRERQLLLSVDNIECILVKGSDVPIYVEQGMADIGIVGSDILDERQYNVNNLLNMPFGACHFAVAAKPETTNYRKIATSYVHTAETYFKSKGIDVELIKLNGSVELAGVVDMVDGIVDIVQTGTTLKANGLVEKQHISDINARLITNKAAYFKKSQLIEQFIRSLEVSIANA
>CP016858.2|AOH61781.2|1423469_1424522_-|poly-beta-1,6-N-acetyl-D-glucosamine-export-protein
MKKIRLELVYLRAIICAIIIITHLLTQITLKHENMEGGSLVLQFYIRNIVIFGTPCFIILSQLLTTLNYQKVTYRYLTTRVKYILIPYILMGLFYSYSESLLTDSSFNKQFIENVLLGQWYGYFIVVIMQFFILSYIIFKINYNLFNSKILLLLSFILQQSFLYYFTNNTAFHDTVLHYYPLSENTIIFGWIFYFFLGAYMGYNYERVLNFLERYLVIMIVLAVATYFVFIALANGDYWNVTSFSYSLTPYNSIMFIVILGICTHFKTMLFNTIQMISAFSFFIYLLHPIILDSLFAYTNIFEDNTMVFLAISLLFILGLCIGVGMILREFYIFRFIIGKQPYKLNINAY
>CP016858.2|AVG21125.1|1424508_1425381_-|intercellular-adhesin-biosynthesis-polysaccharide-N-deacetylase
MKYRKFIILVLSILIILPVSTLDGHHIANADDDSPKKLKYKENSALALNYHRVRKANFLNNFIYFFSSSKEIKNYSVSQSQFESQIKWLKSHDAKFLTLKEFLYYKKKGKFPKRSVWINFDDVDETIYENAYPILKKYKIPATGFIITGHVGEENFHNLDMISKKELKEMYKTGLWEFETHTHDLHNLSKNNKSKLMKASEATIIKDLNKSEKYLTKNFKKSQKTIAYPYGLMNDDKLPVIKKAGLKYGFSLEEKAVTPNSNDYYIPRILISDDAFEHLIKRWDGFHEKD
>CP016858.2|AOH60757.1|1425377_1425683_-|poly-beta-1,6-N-acetyl-D-glucosamine-synthesis-protein-IcaD
MVKPRQREYPTLKSSLNIVRETALIAISCVFWIYCLVVLLVYIGTIFEIHDESINTIRVALNIENTEILDIFETMGIFAIIIFVFFTISILIQKWQRGRES
>CP016858.2|AOH60517.2|1425646_1426885_-|poly-beta-1,6-N-acetyl-D-glucosamine-synthase
MQFFNFLLFYPVFMSIYWIVGSIYFYFTREIRYSLNKKPDINVDELEGITFLLACYNESETIEDTLSNVLALKYEKKEIIIINDGSSDNTAELIYKIKENNDFIFVDLQENRGKANALNQGIKQASYDYVMCLDADTIVDQDAPYYMIENFKHDPKLGAVTGNPRIRNKSSILGKIQTIEYASLIGCIKRSQTLAGAVNTISGVFTLFKKSAVVDVGYWDTDMITEDIAVSWKLHLRGYRIKYEPLAMCWMLVPETLGGLWKQRVRWAQGGHEVLLRDFFSTMKTKRFPLYILMFEQIISILWVYIVLLYLGYLFITANFLDYTFMTYSFSIFLLSSFTMTFINVIQFTVALFIDSRYEKKNMAGLIFVSWYPTVYWIINAAVVLVAFPKALKRKKGGYATWSSPDRGNTQR
>CP016858.2|AOH62483.1|1427048_1427609_+|biofilm-operon-icaADBC-HTH-type-negative-transcriptional-regulator-IcaR
MKDKIIDNAITLFSEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSVKCCFDYLNNIIMMNQNKSNYSIDALYQFLFEFIFDIEERYIRMYVQLSNTPEEFSGNIYGQIQDLNQSLSKEIAKFYDESKIKMTKEDFQNLILLFLESWYLKASFSQKFGAVEESKSQFKDEVYSLLNIFLKK
>CP016858.2|AOH62762.1|1428456_1429119_+|capsular-polysaccharide-biosynthesis-protein-CapA
MKEKFDLVKLLNILKKNIKLLLILPAICLVVSAALTFFVMPDKYTASTQILVNMKKSSSDLAFQNVQSSLQSVNTYTEIIKSPRILDKVSREFDGQYSTAELNSFLKVTNQTNSQIITVSVTTGNKSESDKIVNKISKVFAHDMPKIMSVDNVTILSSAHDNAVKVSPIVSVNLVISIIVGIVLAILIIFLKELLDKRIKTEEDVESQLGLPILGSIQKF
>CP016858.2|AOH62194.2|1429135_1429828_+|capsular-biosynthesis-protein
MTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRKPTQHYIFNLPNNEGLSSLLLNWSTYQDSIISTEIQDLDVLTSGPIPPNPSELITSRAFANLYDTLLMNYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNRDEVKKGKELIEATGAKLLGVVLNRMPKDKSASYYAYYGTDES
>CP016858.2|AOH61342.1|1429824_1430592_+|capsular-biosynthesis-protein
MIDIHNHILVDIDDGPKTIEKSIALLKQAKDEGVTSIVATPHHLHPRYDNTFQQVLVKLAELRTHPEVQALDIKLFPGQEIRITDSILKGLDNGSIQGINRSKYLLIEFPTGEVPHYTKQLFFEIQSRGYIPIIAHPERNRSIAKNPEILYELVANGALSQLTSSSLVGGFGKNIQKLSLQFIECNLAHFVASDAHSCDQRPFLMQELFHNHKLKKYSNDIEALLRNASSVINDNFVYLDRPTKPGKVKSFLKWF
>CP016858.2|AOH62036.1|1430826_1431327_+|N-acetyltransferase
MVLRKVIMQDLDQIIALENIGFSPEEAATREALKLRIEQIQETFIVAEKNDEVIGYINGPVIKERYISDDLFKNVSTNNSEGGYISVLGLVVAPNYQGQGIAGRLLNYFETLAKNHHRHGVTLTCRESLISFYEKYGYRNEGVSESCHGGIKWYNLVKNIKKDDEV
>CP016858.2|AOH60567.1|1431329_1431806_+|peptide-methionine-(S)-S-oxide-reductase
MAVVYVAGGCLWGVEAFFATIPGIIHTEAGRANGRSSKLDGPYDGYAECVKLHFDDRMLTITDIMNYLFEIIDPYSVNQQGNDIGQKYRTGLYSCVDDHLIEARQFIERRKDRDQIAVEVLPLSNYIKSAEEHQQHLEKYPEDMHMCHISKDLLNKYK

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Crispr_ID: CP016858_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016858_8

1864414-1864607

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRT

3 spacers

The CRISPR arrays of CP016858_8

>merge|CP016858|8|1864414-1864607|CRT
TACAAGTTGGCGGGGCCCCAACACAGAAGCTGACAGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAACGGGGCCCCAACACAGAAGGTGACGAAAAGTCAGCATACAATAATGTGCAAGTTGGCGGGGCCCCAACA

>CP016858|8|2|1864414-1864607|CRT
TACAAGTTGGCGGGGCCCCAACA	CAGAAGCTGACAGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGGGCCCCAACA	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA
AGTTGGGGAACGGGGCCCCAACA	CAGAAGGTGACGAAAAGTCAGCATACAATAATG
TGCAAGTTGGCGGGGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP016858.2\|AOH61777.1\|1868616_1869882_+\|lipid-II:glycine-glycyltransferase-FemX	unknown	unknown	gnl\|CDD\|225224
CP016858.2\|AOH61719.1\|1873914_1874079_-\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH60713.1\|1864962_1865313_+\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP016858.2\|AOH60671.1\|1862390_1862624_+\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|340452
CP016858.2\|AOH61519.1\|1869998_1873166_+\|AcrB/AcrD/AcrF-family-protein	unknown	unknown	gnl\|CDD\|223911
CP016858.2\|AOH60852.2\|1865414_1866626_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
CP016858.2\|AOH61167.1\|1861439_1861925_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP016858.2\|AOH60666.1\|1863249_1864272_+\|cyclic-pyranopterin-monophosphate-synthase	unknown	unknown	gnl\|CDD\|274250
CP016858.2\|AOH61146.2\|1867220_1867985_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
CP016858.2\|AOH60913.1\|1860183_1861443_+\|molybdopterin-molybdenumtransferase	unknown	unknown	gnl\|CDD\|238452
CP016858.2\|AOH61118.1\|1859118_1859625_+\|molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223595
CP016858.2\|AOH60324.2\|1873352_1873670_-\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61451.1\|1866618_1867059_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP016858.2\|AVG21189.1\|1864666_1864837_-\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH62524.1\|1862630_1863230_+\|molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP016858.2\|AVG21187.1\|1858083_1859088_+\|molybdopterin-biosynthesis-protein-MoeB	unknown	unknown	gnl\|CDD\|181084
CP016858.2\|AOH61956.1\|1857308_1857914_+\|molybdenum-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226628
CP016858.2\|AOH60776.1\|1861938_1862385_+\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP016858.2\|AOH63088.1\|1859626_1860121_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
CP016858.2\|AVG21190.1\|1867976_1868228_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP016858.2\|AOH61777.1\|1868616_1869882_+\|lipid-II:glycine-glycyltransferase-FemX	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	4.8324e-143
CP016858.2\|AOH60776.1\|1861938_1862385_+\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58
CP016858.2\|AOH60671.1\|1862390_1862624_+\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
CP016858.2\|AOH61519.1\|1869998_1873166_+\|AcrB/AcrD/AcrF-family-protein	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP016858.2\|AOH60852.2\|1865414_1866626_-\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.27961e-72
CP016858.2\|AOH61167.1\|1861439_1861925_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	4.35501e-50
CP016858.2\|AOH60666.1\|1863249_1864272_+\|cyclic-pyranopterin-monophosphate-synthase	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
CP016858.2\|AOH61146.2\|1867220_1867985_+\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
CP016858.2\|AOH60913.1\|1860183_1861443_+\|molybdopterin-molybdenumtransferase	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	9.49423e-160
CP016858.2\|AOH61118.1\|1859118_1859625_+\|molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	1.02752e-64
CP016858.2\|AOH61451.1\|1866618_1867059_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.873e-15
CP016858.2\|AOH62524.1\|1862630_1863230_+\|molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	5.68918e-67
CP016858.2\|AVG21187.1\|1858083_1859088_+\|molybdopterin-biosynthesis-protein-MoeB	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	3.67241e-132
CP016858.2\|AOH61956.1\|1857308_1857914_+\|molybdenum-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	3.32197e-115
CP016858.2\|AOH60713.1\|1864962_1865313_+\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20
CP016858.2\|AOH63088.1\|1859626_1860121_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	3.63862e-98

>CP016858.2|AOH60666.1|1863249_1864272_+|cyclic-pyranopterin-monophosphate-synthase
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP016858.2|AOH62524.1|1862630_1863230_+|molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>CP016858.2|AOH60671.1|1862390_1862624_+|molybdopterin-synthase-sulfur-carrier-subunit
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP016858.2|AOH60776.1|1861938_1862385_+|molybdopterin-synthase-catalytic-subunit
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP016858.2|AOH61167.1|1861439_1861925_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRNEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>CP016858.2|AOH60913.1|1860183_1861443_+|molybdopterin-molybdenumtransferase
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFVDGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP016858.2|AOH63088.1|1859626_1860121_-|cyclic-pyranopterin-monophosphate-synthase-MoaC
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTLIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSNQ
>CP016858.2|AOH61118.1|1859118_1859625_+|molybdenum-cofactor-biosynthesis-protein
MGEHQNVKLNRTVKAAVLTVSDTRDFDTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIDGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP016858.2|AVG21187.1|1858083_1859088_+|molybdopterin-biosynthesis-protein-MoeB
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKYRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP016858.2|AOH61956.1|1857308_1857914_+|molybdenum-ABC-transporter-ATP-binding-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG
>CP016858.2|AVG21189.1|1864666_1864837_-|hypothetical-protein
MFRFISFGQLVVYSTTFIPKKDILQLNGMECDINVKEPLKIYYVVILKSGIEMIFS
>CP016858.2|AOH60713.1|1864962_1865313_+|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP016858.2|AOH60852.2|1865414_1866626_-|MFS-transporter
MTNQGSLNKSPIFTKSFTINFLVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP016858.2|AOH61451.1|1866618_1867059_-|MarR-family-transcriptional-regulator
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLREAHND
>CP016858.2|AOH61146.2|1867220_1867985_+|VOC-family-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP016858.2|AVG21190.1|1867976_1868228_-|hypothetical-protein
MRTIILSLFIIMNIVAIIMTLSQPLTVNYFSLRVILIFFTFILSIFFILIKSSRLNNILTILSIVLVIIHMGILAHSTYVYLY
>CP016858.2|AOH61777.1|1868616_1869882_+|lipid-II:glycine-glycyltransferase-FemX
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMKTSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP016858.2|AOH61519.1|1869998_1873166_+|AcrB/AcrD/AcrF-family-protein
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP016858.2|AOH60324.2|1873352_1873670_-|hypothetical-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>CP016858.2|AOH61719.1|1873914_1874079_-|hypothetical-protein
MSLENQLAELKYDYVRLQGDIEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD

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Crispr_ID: CP016858_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016858_9

1988375-1988525

Orphan

Consensus_repeat	Method
TGCATAAGAGCCCCTAACAACTAAAGTT	CRISPRCasFinder

2 spacers

csa3

The CRISPR arrays of CP016858_9

>merge|CP016858|9|1988375-1988525|CRISPRCasFinder
TAGAAAGAAGCCCCTAACAACTAAAGTTGAAAAATAGAGGAACACAGTTGGATGCTACGCATCAACTGCATAAGAGCCCCTAACAACTAAAGTTTAAAAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTT

>CP016858|9|8|1988375-1988525|CRISPRCasFinder
TAGAAAGAAGCCCCTAACAACTAAAGTT	GAAAAATAGAGGAACACAGTTGGATGCTACGCATCAAC
TGCATAAGAGCCCCTAACAACTAAAGTT	TAAAAGTAGGAGCGCCTGCGCTAAGCGCA
TGCATAAGAGCCCCTAACAACTAAAGTT

Protein	Signature genes	Signature genes Name	Protein_function
CP016858.2\|AOH60343.1\|1990881_1991202_-\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP016858.2\|AVG21205.1\|1985734_1985827_-\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH60711.1\|1996768_1997212_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
CP016858.2\|AVG21206.1\|1987938_1988043_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH63083.1\|1996155_1996569_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
CP016858.2\|AOH60865.1\|1993422_1993653_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH62776.1\|1989899_1990880_-\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
CP016858.2\|AOH61548.2\|1984172_1985030_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
CP016858.2\|AOH62870.1\|1987310_1987514_+\|resolvase	unknown	unknown	gnl\|CDD\|239737
CP016858.2\|AOH62197.1\|1997332_1998043_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP016858.2\|AOH62234.1\|1991353_1992019_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
CP016858.2\|AOH61718.1\|1986115_1987252_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|366887
CP016858.2\|AOH62339.1\|1976899_1979032_-\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226234
CP016858.2\|AOH60280.1\|1981285_1983091_+\|glutamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
CP016858.2\|AVG21207.1\|1994324_1995698_+\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
CP016858.2\|AOH61373.1\|1988542_1989634_-\|transcriptional-regulator	unknown	unknown	unknown
CP016858.2\|AOH61209.1\|1983322_1984105_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
CP016858.2\|AOH62666.1\|1976453_1976888_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP016858.2\|AOH61454.1\|1992453_1993392_+\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
CP016858.2\|AOH61440.1\|1979066_1980605_-\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123

Protein	Function_ID	Function_description	E-value
CP016858.2\|AOH60343.1\|1990881_1991202_-\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
CP016858.2\|AOH62197.1\|1997332_1998043_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP016858.2\|AOH60711.1\|1996768_1997212_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
CP016858.2\|AOH63083.1\|1996155_1996569_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP016858.2\|AOH62776.1\|1989899_1990880_-\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.049e-108
CP016858.2\|AOH61548.2\|1984172_1985030_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.39747e-59
CP016858.2\|AOH62870.1\|1987310_1987514_+\|resolvase	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.78732e-14
CP016858.2\|AOH62234.1\|1991353_1992019_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.74381e-48
CP016858.2\|AOH61718.1\|1986115_1987252_+\|DNA-binding-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	3.91533e-06
CP016858.2\|AOH62339.1\|1976899_1979032_-\|PRD-domain-containing-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	9.74009e-67
CP016858.2\|AOH60280.1\|1981285_1983091_+\|glutamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP016858.2\|AVG21207.1\|1994324_1995698_+\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
CP016858.2\|AOH61209.1\|1983322_1984105_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	4.88024e-103
CP016858.2\|AOH62666.1\|1976453_1976888_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP016858.2\|AOH61454.1\|1992453_1993392_+\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP016858.2\|AOH61440.1\|1979066_1980605_-\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0

>CP016858.2|AVG21206.1|1987938_1988043_+|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>CP016858.2|AOH62870.1|1987310_1987514_+|resolvase
MIVYQRKINIDTLKEFGCGCVYSERISGVKRTELVKCLDYLRESDTLVVYQLDRLGRTTKLLIELSQ
>CP016858.2|AOH61718.1|1986115_1987252_+|DNA-binding-protein
MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIYKKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILKKTEYLTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELNMLIDHYKRDVKDYDNARKYSNIYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRFINSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVVSNVKKESRSNTLIELSKILENGYTIDKEEFKKEDDYLSKYIFTDIDYLKKLESKINVAIDIRSGEIHLVLDDDSLDILIQNQKYGNEF
>CP016858.2|AVG21205.1|1985734_1985827_-|hypothetical-protein
MFIFKTTSKSHFHNNVKSLECIKIPINKNR
>CP016858.2|AOH61548.2|1984172_1985030_+|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAEHFLAE
>CP016858.2|AOH61209.1|1983322_1984105_+|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMFAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP016858.2|AOH60280.1|1981285_1983091_+|glutamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP016858.2|AOH61440.1|1979066_1980605_-|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP016858.2|AOH62339.1|1976899_1979032_-|PRD-domain-containing-protein
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGTDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLDQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFISDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP016858.2|AOH62666.1|1976453_1976888_-|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP016858.2|AOH61373.1|1988542_1989634_-|transcriptional-regulator
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP016858.2|AOH62776.1|1989899_1990880_-|cation-transporter
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP016858.2|AOH60343.1|1990881_1991202_-|ArsR-family-transcriptional-regulator
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP016858.2|AOH62234.1|1991353_1992019_+|SDR-family-NAD(P)-dependent-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGDQDIKDALTQFENETD
>CP016858.2|AOH61454.1|1992453_1993392_+|mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP016858.2|AOH60865.1|1993422_1993653_+|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP016858.2|AVG21207.1|1994324_1995698_+|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRISNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP016858.2|AOH63083.1|1996155_1996569_+|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP016858.2|AOH60711.1|1996768_1997212_+|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP016858.2|AOH62197.1|1997332_1998043_-|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE

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Crispr_ID: CP016858_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP016858_10

2223395-2223473

Orphan

Consensus_repeat	Method
TGCAGGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP016858_10

>merge|CP016858|10|2223395-2223473|CRISPRCasFinder
TGCAGGTTGGCGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACA

>CP016858|10|9|2223395-2223473|CRISPRCasFinder
TGCAGGTTGGCGGGGCCCCAACA	CAGAAGCTGACGAAAAGTCAGCTTACGATAATG
TGCAGGTTGGCGGGGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP016858.2\|AVG21244.1\|2221913_2222126_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61979.1\|2229002_2229278_-\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61516.2\|2229895_2230096_+\|DUF1128-domain-containing-protein	unknown	unknown	gnl\|CDD\|227177
CP016858.2\|AOH63136.1\|2222141_2223128_-\|aromatic-acid-exporter-family-protein	unknown	unknown	gnl\|CDD\|226614
CP016858.2\|AOH61309.1\|2225031_2225733_+\|transporter	unknown	unknown	gnl\|CDD\|227100
CP016858.2\|AOH61896.2\|2221238_2221652_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61844.1\|2226762_2227392_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP016858.2\|AOH62129.1\|2218175_2218676_-\|non-heme-ferritin	unknown	unknown	gnl\|CDD\|224445
CP016858.2\|AOH62907.1\|2227507_2228725_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
CP016858.2\|AOH62511.2\|2230098_2231355_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|376723
CP016858.2\|AOH62382.1\|2216094_2217165_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP016858.2\|AOH63122.1\|2229284_2229749_-\|protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|319971
CP016858.2\|AOH61224.2\|2225729_2226773_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
CP016858.2\|AOH61756.1\|2224630_2225017_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61852.1\|2218967_2220281_+\|DUF1727-domain-containing-protein	unknown	unknown	gnl\|CDD\|223840
CP016858.2\|AVG21242.1\|2220282_2221014_+\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
CP016858.2\|AOH62453.1\|2223655_2224414_+\|methionine-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
CP016858.2\|AVG21243.1\|2221099_2221210_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AVG21241.1\|2218001_2218094_+\|hypothetical-protein	unknown	unknown	unknown
CP016858.2\|AOH61325.1\|2217232_2217787_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834

Protein	Function_ID	Function_description	E-value
CP016858.2\|AOH61516.2\|2229895_2230096_+\|DUF1128-domain-containing-protein	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	2.44511e-24
CP016858.2\|AOH63136.1\|2222141_2223128_-\|aromatic-acid-exporter-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	6.20478e-76
CP016858.2\|AOH61309.1\|2225031_2225733_+\|transporter	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	9.42019e-79
CP016858.2\|AOH61844.1\|2226762_2227392_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.91794e-79
CP016858.2\|AOH61224.2\|2225729_2226773_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.78722e-72
CP016858.2\|AOH62907.1\|2227507_2228725_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	4.24482e-85
CP016858.2\|AOH62511.2\|2230098_2231355_+\|aminopeptidase	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
CP016858.2\|AOH62382.1\|2216094_2217165_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP016858.2\|AOH63122.1\|2229284_2229749_-\|protein-tyrosine-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	3.39151e-65
CP016858.2\|AOH62129.1\|2218175_2218676_-\|non-heme-ferritin	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	4.6035e-74
CP016858.2\|AOH61852.1\|2218967_2220281_+\|DUF1727-domain-containing-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	7.18737e-99
CP016858.2\|AVG21242.1\|2220282_2221014_+\|glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	3.33663e-121
CP016858.2\|AOH62453.1\|2223655_2224414_+\|methionine-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.9498e-126
CP016858.2\|AOH61325.1\|2217232_2217787_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	1.92778e-75

>CP016858.2|AOH63136.1|2222141_2223128_-|aromatic-acid-exporter-family-protein
MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA
>CP016858.2|AVG21244.1|2221913_2222126_+|hypothetical-protein
MPNFYRQCKLGCGPQQREIGFPISTDNASWGVGPNTENFEKKFYRQSELGWDDEINFMKISFLSHSHGAN
>CP016858.2|AOH61896.2|2221238_2221652_+|hypothetical-protein
MKPTKVILKDASYLHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEVKFEFALFDSDMDNLKHMDCDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMATESGISLRINVAKSDFTKFINELASLH
>CP016858.2|AVG21243.1|2221099_2221210_+|hypothetical-protein
MDGNNQIDVCFFVLVNNYYTMSIYPRIINSNGDYAT
>CP016858.2|AVG21242.1|2220282_2221014_+|glutamine-amidotransferase
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHDFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEIQAKQVLIDRANRQKKSR
>CP016858.2|AOH61852.1|2218967_2220281_+|DUF1727-domain-containing-protein
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISSFDVAPFLYLNINDEKYDMKIAGDFNAYNALAAYTVLRELGLNEQTIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>CP016858.2|AOH62129.1|2218175_2218676_-|non-heme-ferritin
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGARTFDEE
>CP016858.2|AVG21241.1|2218001_2218094_+|hypothetical-protein
MTKNTIISLENEKTQINDSENESSDLRKAK
>CP016858.2|AOH61325.1|2217232_2217787_-|DNA-polymerase-III-subunit-epsilon
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKIHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYENLTYVTNIYGKNLKDKG
>CP016858.2|AOH62382.1|2216094_2217165_+|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGMTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>CP016858.2|AOH62453.1|2223655_2224414_+|methionine-aminopeptidase
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
>CP016858.2|AOH61756.1|2224630_2225017_+|hypothetical-protein
MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMRYLITKKEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA
>CP016858.2|AOH61309.1|2225031_2225733_+|transporter
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
>CP016858.2|AOH61224.2|2225729_2226773_+|two-component-sensor-histidine-kinase
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD
>CP016858.2|AOH61844.1|2226762_2227392_+|DNA-binding-response-regulator
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMDDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>CP016858.2|AOH62907.1|2227507_2228725_-|YihY/virulence-factor-BrkB-family-protein
MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIIFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDSNATHQRTYHVDEHPSDTYPEDDKNIKDKIVDKLKKD
>CP016858.2|AOH61979.1|2229002_2229278_-|hypothetical-protein
MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR
>CP016858.2|AOH63122.1|2229284_2229749_-|protein-tyrosine-phosphatase
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>CP016858.2|AOH61516.2|2229895_2230096_+|DUF1128-domain-containing-protein
MTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRHE
>CP016858.2|AOH62511.2|2230098_2231355_+|aminopeptidase
MGILTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHEIKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKEQAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAGKGEAVLKDLINTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWASTF

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP016858_2	2.1\|488859\|34\|CP016858\|CRISPRCasFinder	488859-488892	34	CP016858.2	2783787-2783820	0	1.0
CP016858_2	2.1\|488859\|34\|CP016858\|CRISPRCasFinder	488859-488892	34	CP016858.2	2872979-2873012	0	1.0
CP016858_7	7.1\|1423174\|17\|CP016858\|PILER-CR	1423174-1423190	17	CP016858.2	537565-537581	0	1.0
CP016858_7	7.1\|1423174\|17\|CP016858\|PILER-CR	1423174-1423190	17	CP016858.2	537620-537636	0	1.0
CP016858_7	7.1\|1423174\|17\|CP016858\|PILER-CR	1423174-1423190	17	CP016858.2	1067622-1067638	0	1.0
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	208069-208084	0	1.0
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	308698-308713	0	1.0
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	488562-488577	0	1.0
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	985847-985862	0	1.0
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	1588629-1588644	0	1.0
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	2212513-2212528	0	1.0
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	2212571-2212586	0	1.0
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	2783759-2783774	0	1.0
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	2868628-2868643	0	1.0
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	2873025-2873040	0	1.0
CP016858_8	8.2\|1864493\|36\|CP016858\|CRT	1864493-1864528	36	CP016858.2	208122-208157	0	1.0
CP016858_1	1.2\|425936\|26\|CP016858\|CRT	425936-425961	26	CP016858.2	532115-532140	1	0.962
CP016858_4	4.1\|532171\|26\|CP016858\|CRISPRCasFinder	532171-532196	26	CP016858.2	569234-569259	1	0.962
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	212037-212052	1	0.938
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	1775235-1775250	1	0.938
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	2379950-2379965	1	0.938
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	2558528-2558543	1	0.938
CP016858_7	7.2\|1423244\|16\|CP016858\|PILER-CR	1423244-1423259	16	CP016858.2	2826972-2826987	1	0.938
CP016858_8	8.2\|1864493\|36\|CP016858\|CRT	1864493-1864528	36	CP016858.2	2380061-2380096	1	0.972
CP016858_10	10.1\|2223418\|33\|CP016858\|CRISPRCasFinder	2223418-2223450	33	CP016858.2	208069-208101	1	0.97
CP016858_10	10.1\|2223418\|33\|CP016858\|CRISPRCasFinder	2223418-2223450	33	CP016858.2	532128-532160	1	0.97
CP016858_10	10.1\|2223418\|33\|CP016858\|CRISPRCasFinder	2223418-2223450	33	CP016858.2	1588612-1588644	1	0.97
CP016858_10	10.1\|2223418\|33\|CP016858\|CRISPRCasFinder	2223418-2223450	33	CP016858.2	2558511-2558543	1	0.97
CP016858_10	10.1\|2223418\|33\|CP016858\|CRISPRCasFinder	2223418-2223450	33	CP016858.2	2873025-2873057	1	0.97
CP016858_1	1.2\|425936\|26\|CP016858\|CRT	425936-425961	26	CP016858.2	985867-985892	2	0.923
CP016858_1	1.4\|426050\|26\|CP016858\|CRT	426050-426075	26	CP016858.2	569234-569259	2	0.923
CP016858_1	1.5\|426076\|33\|CP016858\|CRISPRCasFinder	426076-426108	33	CP016858.2	488555-488587	2	0.939
CP016858_4	4.1\|532171\|26\|CP016858\|CRISPRCasFinder	532171-532196	26	CP016858.2	569178-569203	2	0.923
CP016858_7	7.1\|1423174\|17\|CP016858\|PILER-CR	1423174-1423190	17	CP016859.2	19655-19671	2	0.882
CP016858_8	8.1\|1864437\|33\|CP016858\|CRT	1864437-1864469	33	CP016858.2	208069-208101	2	0.939
CP016858_8	8.1\|1864437\|33\|CP016858\|CRT	1864437-1864469	33	CP016858.2	532128-532160	2	0.939
CP016858_8	8.1\|1864437\|33\|CP016858\|CRT	1864437-1864469	33	CP016858.2	1588612-1588644	2	0.939
CP016858_8	8.1\|1864437\|33\|CP016858\|CRT	1864437-1864469	33	CP016858.2	2873025-2873057	2	0.939
CP016858_8	8.2\|1864493\|36\|CP016858\|CRT	1864493-1864528	36	CP016858.2	2212612-2212647	2	0.944
CP016858_8	8.2\|1864493\|36\|CP016858\|CRT	1864493-1864528	36	CP016858.2	2558569-2558604	2	0.944
CP016858_8	8.3\|1864552\|33\|CP016858\|CRT	1864552-1864584	33	CP016858.2	208069-208101	2	0.939
CP016858_8	8.3\|1864552\|33\|CP016858\|CRT	1864552-1864584	33	CP016858.2	532128-532160	2	0.939
CP016858_8	8.3\|1864552\|33\|CP016858\|CRT	1864552-1864584	33	CP016858.2	1588612-1588644	2	0.939
CP016858_8	8.3\|1864552\|33\|CP016858\|CRT	1864552-1864584	33	CP016858.2	2783742-2783774	2	0.939
CP016858_8	8.3\|1864552\|33\|CP016858\|CRT	1864552-1864584	33	CP016858.2	2873025-2873057	2	0.939
CP016858_10	10.1\|2223418\|33\|CP016858\|CRISPRCasFinder	2223418-2223450	33	CP016858.2	2783742-2783774	2	0.939

1. spacer 2.1|488859|34|CP016858|CRISPRCasFinder matches to position: 2783787-2783820, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

2. spacer 2.1|488859|34|CP016858|CRISPRCasFinder matches to position: 2872979-2873012, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

3. spacer 7.1|1423174|17|CP016858|PILER-CR matches to position: 537565-537581, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

4. spacer 7.1|1423174|17|CP016858|PILER-CR matches to position: 537620-537636, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

5. spacer 7.1|1423174|17|CP016858|PILER-CR matches to position: 1067622-1067638, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

6. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 208069-208084, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

7. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 308698-308713, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

8. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 488562-488577, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

9. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 985847-985862, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

10. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 1588629-1588644, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

11. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 2212513-2212528, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

12. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 2212571-2212586, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

13. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 2783759-2783774, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

14. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 2868628-2868643, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

15. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 2873025-2873040, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

16. spacer 8.2|1864493|36|CP016858|CRT matches to position: 208122-208157, mismatch: 0, identity: 1.0

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcaaaaagaaattctacagacaatgca	Protospacer
************************************

17. spacer 1.2|425936|26|CP016858|CRT matches to position: 532115-532140, mismatch: 1, identity: 0.962

tcgccagcttctgtgttggggccccg	CRISPR spacer
tcgtcagcttctgtgttggggccccg	Protospacer
***.**********************

18. spacer 4.1|532171|26|CP016858|CRISPRCasFinder matches to position: 569234-569259, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
******************** *****

19. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 212037-212052, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaaaaatg	Protospacer
*********** ****

20. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 1775235-1775250, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaacaatg	Protospacer
***********.****

21. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 2379950-2379965, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagctttcaataatg	Protospacer
******* ********

22. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 2558528-2558543, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttactataatg	Protospacer
********* ******

23. spacer 7.2|1423244|16|CP016858|PILER-CR matches to position: 2826972-2826987, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaacaatg	Protospacer
***********.****

24. spacer 8.2|1864493|36|CP016858|CRT matches to position: 2380061-2380096, mismatch: 1, identity: 0.972

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaagaaattctacagacaatgca	Protospacer
***********.************************

25. spacer 10.1|2223418|33|CP016858|CRISPRCasFinder matches to position: 208069-208101, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

26. spacer 10.1|2223418|33|CP016858|CRISPRCasFinder matches to position: 532128-532160, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

27. spacer 10.1|2223418|33|CP016858|CRISPRCasFinder matches to position: 1588612-1588644, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

28. spacer 10.1|2223418|33|CP016858|CRISPRCasFinder matches to position: 2558511-2558543, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttactataatg	Protospacer
************************** ******

29. spacer 10.1|2223418|33|CP016858|CRISPRCasFinder matches to position: 2873025-2873057, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

30. spacer 1.2|425936|26|CP016858|CRT matches to position: 985867-985892, mismatch: 2, identity: 0.923

tcgccagcttctgtgttggggccccg	CRISPR spacer
tcgtcagcttctttgttggggccccg	Protospacer
***.******** *************

31. spacer 1.4|426050|26|CP016858|CRT matches to position: 569234-569259, mismatch: 2, identity: 0.923

ccgccagcctctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** **.*****************

32. spacer 1.5|426076|33|CP016858|CRISPRCasFinder matches to position: 488555-488587, mismatch: 2, identity: 0.939

ccaacttgcacactattgtaagctgactttcca	CRISPR spacer
ccaacttgcacattattgtaagctgacttacca	Protospacer
************.**************** ***

33. spacer 4.1|532171|26|CP016858|CRISPRCasFinder matches to position: 569178-569203, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
*************.****** *****

34. spacer 7.1|1423174|17|CP016858|PILER-CR matches to position: 19655-19671, mismatch: 2, identity: 0.882

aagaatttcgaaaagaa	CRISPR spacer
aagaattttcaaaagaa	Protospacer
********. *******

35. spacer 8.1|1864437|33|CP016858|CRT matches to position: 208069-208101, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

36. spacer 8.1|1864437|33|CP016858|CRT matches to position: 532128-532160, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

37. spacer 8.1|1864437|33|CP016858|CRT matches to position: 1588612-1588644, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

38. spacer 8.1|1864437|33|CP016858|CRT matches to position: 2873025-2873057, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

39. spacer 8.2|1864493|36|CP016858|CRT matches to position: 2212612-2212647, mismatch: 2, identity: 0.944

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaggaaattctacagacaatgca	Protospacer
***********.***.********************

40. spacer 8.2|1864493|36|CP016858|CRT matches to position: 2558569-2558604, mismatch: 2, identity: 0.944

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaagaaattctacaggcaatgca	Protospacer
***********.****************.*******

41. spacer 8.3|1864552|33|CP016858|CRT matches to position: 208069-208101, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

42. spacer 8.3|1864552|33|CP016858|CRT matches to position: 532128-532160, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

43. spacer 8.3|1864552|33|CP016858|CRT matches to position: 1588612-1588644, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

44. spacer 8.3|1864552|33|CP016858|CRT matches to position: 2783742-2783774, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
******.*************** **********

45. spacer 8.3|1864552|33|CP016858|CRT matches to position: 2873025-2873057, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

46. spacer 10.1|2223418|33|CP016858|CRISPRCasFinder matches to position: 2783742-2783774, mismatch: 2, identity: 0.939

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
****** *******************.******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP016858_1	1.1\|425853\|53\|CP016858\|CRT	425853-425905	53	MG543995	Staphylococcus phage UPMK_1, partial genome	76246-76298	4	0.925
CP016858_1	1.2\|425936\|26\|CP016858\|CRT	425936-425961	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
CP016858_4	4.1\|532171\|26\|CP016858\|CRISPRCasFinder	532171-532196	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
CP016858_4	4.1\|532171\|26\|CP016858\|CRISPRCasFinder	532171-532196	26	NZ_CP034332	Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence	3359-3384	5	0.808
CP016858_4	4.1\|532171\|26\|CP016858\|CRISPRCasFinder	532171-532196	26	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	715511-715536	5	0.808
CP016858_10	10.1\|2223418\|33\|CP016858\|CRISPRCasFinder	2223418-2223450	33	NC_021536	Synechococcus phage S-IOM18 genomic sequence	159745-159777	10	0.697

1. spacer 1.1|425853|53|CP016858|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ttgggagtgggacagaaatgatattttcgcaaaatttatttcgtcgtcccacc	CRISPR spacer
aagggagtgggacagaaatgatagtttctcaaaatttatttcgtcgtcccacc	Protospacer
  ********************* **** ************************

2. spacer 1.2|425936|26|CP016858|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

tcgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 4.1|532171|26|CP016858|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.*****************

4. spacer 4.1|532171|26|CP016858|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
gtaggcccagacacagaagctggcgg	Protospacer
  .***** .****************

5. spacer 4.1|532171|26|CP016858|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
tcagggccaaacacagaagctggcgg	Protospacer
. .** ** *****************

6. spacer 10.1|2223418|33|CP016858|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
aggtgcttgacgaaaactcaccttacgataaaa	Protospacer
 .* . .********* *** ********** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

298735 : 307208

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOH61160.2\|298735_299302_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1
AOH62495.1\|299304_300333_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-61	41.4
AOH60461.2\|300325_301810_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
AOH60291.1\|301788_303978_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.0e-140	39.7
AOH60456.1\|303970_304642_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AOH61436.1\|304643_304907_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AOH62315.1\|304906_305611_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AOH61710.1\|305614_306739_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AOH61842.2\|306725_307208_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7

DBSCAN-SWA_2

468123 : 487353

Staphylococcus_phage(63.16%)

protease,terminase,integrase,capsid

attL 470845:470861|attR 484801:484817

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOH60890.1\|468123_468885_-	Fe-S cluster assembly ATPase SufC	A0A1V0SE00	Indivirus	4.4e-06	23.3
AOH60940.1\|469212_470064_+	DUF368 domain-containing protein	NA	NA	NA	NA
AOH60945.1\|470296_470491_-	CsbD family protein	NA	NA	NA	NA
470845:470861	attL	NA	NA	NA	NA
AOH61712.1\|471524_472079_+	hypothetical protein	A0A1W6JQE5	Staphylococcus_phage	4.8e-71	76.1
AOH60510.1\|472313_473282_-\|protease	CAAX protease	A0A0H4U080	Erysipelothrix_phage	5.9e-24	27.3
AVG21341.1\|473558_473714_-\|terminase	terminase	A0A1W6JQF0	Staphylococcus_phage	3.1e-20	92.0
AOH61780.1\|473710_474202_-	pathogenicity island protein	A0A2H4JB26	uncultured_Caudovirales_phage	7.9e-25	40.5
AOH60997.1\|474385_475444_-\|capsid	phage capsid protein	A0A0K2CZ99	Paenibacillus_phage	3.6e-14	26.6
AOH61988.1\|475430_475637_-	hypothetical protein	NA	NA	NA	NA
AOH61322.1\|475861_476206_-	pathogenicity island protein	A0A1W6JQD5	Staphylococcus_phage	9.4e-41	65.2
AOH60928.1\|476876_479249_-	DNA primase	A0A2H4JCU9	uncultured_Caudovirales_phage	9.8e-137	39.3
AOH62419.1\|479340_479589_-	hypothetical protein	Q4ZE75	Staphylococcus_phage	1.4e-22	58.6
AOH62136.1\|479589_479973_-	pathogenicity island protein	A0A1W6JQI7	Staphylococcus_phage	4.4e-63	96.9
AOH63094.1\|479974_480178_-	pathogenicity island protein	A0A1W6JQF4	Staphylococcus_phage	2.0e-30	98.5
AOH61959.1\|480144_480318_-	pathogenicity island protein	NA	NA	NA	NA
AOH62963.1\|480329_480602_-	pathogenicity island protein	Q4ZE77	Staphylococcus_phage	4.8e-40	88.9
AOH63032.2\|480594_480858_-	XRE family transcriptional regulator	A0A2H4J9X2	uncultured_Caudovirales_phage	4.1e-36	94.8
AOH60904.1\|481050_481383_+	XRE family transcriptional regulator	A0A1J0MFC1	Staphylococcus_phage	1.6e-37	74.5
AOH61327.1\|481394_481853_+	ImmA/IrrE family metallo-endopeptidase	A0A2I6PEK4	Staphylococcus_phage	4.3e-65	82.1
AVG21005.1\|481869_482598_+	exotoxin	A0EX09	Staphylococcus_phage	1.6e-26	34.1
AOH60678.1\|482621_483350_+	exotoxin	A0EX09	Staphylococcus_phage	1.2e-21	31.8
AOH60290.1\|483437_484658_+\|integrase	site-specific integrase	Q4ZE80	Staphylococcus_phage	2.9e-100	47.5
AOH61077.2\|484800_485622_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
484801:484817	attR	NA	NA	NA	NA
AOH60754.2\|485639_486335_-	ABC transporter permease	NA	NA	NA	NA
AOH60626.1\|486327_487353_-	methionine import ATP-binding protein MetN 2	G3M9Y6	Bacillus_virus	3.9e-26	33.3

DBSCAN-SWA_3

566044 : 580775

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOH62990.1\|566044_566806_-	iron ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6
AOH61389.2\|566802_567759_-	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
AOH60621.1\|567745_568717_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
AVG21016.1\|568755_568911_-	hypothetical protein	NA	NA	NA	NA
AVG21017.1\|569187_569292_-	hypothetical protein	NA	NA	NA	NA
AOH61732.1\|569424_570396_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AVG21018.1\|570513_572619_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AOH62295.1\|572581_572980_-	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AVG21019.1\|573129_573396_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AOH61912.2\|573780_574647_+	EamA/RhaT family transporter	NA	NA	NA	NA
AOH60939.1\|574666_575167_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AVG21020.1\|575196_575442_+	hypothetical protein	NA	NA	NA	NA
AOH60287.1\|575507_577013_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AVG21021.1\|577090_577192_-	hypothetical protein	NA	NA	NA	NA
AOH62125.1\|577282_578200_+	lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
AVG21022.1\|578612_578711_-	hypothetical protein	NA	NA	NA	NA
AOH61397.1\|578823_579366_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AOH62168.1\|579716_580775_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7

DBSCAN-SWA_4

592747 : 600567

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOH62970.1\|592747_593899_-	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	1.6e-23	35.7
AOH60342.1\|593882_594476_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AOH62936.1\|594826_595495_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AOH61760.1\|595496_595916_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AOH60568.1\|595919_596633_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AOH60564.1\|596731_597316_+	hypothetical protein	NA	NA	NA	NA
AOH61855.1\|597595_598036_+	hypothetical protein	NA	NA	NA	NA
AOH62243.1\|598377_598851_+	DoxX family protein	NA	NA	NA	NA
AOH61969.2\|598825_599512_+	DNA-binding response regulator	NA	NA	NA	NA
AOH61478.1\|599511_600567_+	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	2.1e-14	30.0

DBSCAN-SWA_5

2110310 : 2197956

114

Staphylococcus_phage(92.41%)

protease,terminase,tail,integrase,capsid,head,holin,portal

attL 2124177:2124194|attR 2149108:2149125

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOH61456.1\|2110310_2111054_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AOH62444.1\|2111228_2111513_+	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
AOH62846.1\|2111588_2113205_+	molecular chaperone GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
AVG21223.1\|2113906_2114119_+	pathogenicity island family protein	Q4ZE86	Staphylococcus_phage	1.1e-23	74.3
AOH60770.1\|2114115_2114706_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	1.1e-97	95.8
AOH61520.2\|2115023_2115401_+	hypothetical protein	NA	NA	NA	NA
AOH63086.1\|2115565_2116009_+	N-acetyltransferase	NA	NA	NA	NA
AOH60320.1\|2116861_2118169_-	TrkH family potassium uptake protein	NA	NA	NA	NA
AOH62075.2\|2118329_2119241_+	ferrichrome ABC transporter substrate-binding protein	NA	NA	NA	NA
AOH60950.2\|2119302_2120148_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AOH61422.2\|2120519_2121743_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AVG21224.1\|2122177_2123233_+	bi-component leukocidin LukGH subunit H	A0A1X9IGW5	Staphylococcus_phage	2.8e-35	34.3
AOH62742.2\|2123254_2124271_+	bi-component leukocidin LukGH subunit G	A0A2I6PER8	Staphylococcus_phage	1.1e-25	29.0
2124177:2124194	attL	NA	NA	NA	NA
AOH62474.2\|2125389_2126427_-\|integrase	site-specific integrase	A0A1X9H022	Staphylococcus_phage	3.8e-178	99.7
AOH62147.1\|2126617_2127331_-	toxin MazF	A0A1X9H026	Staphylococcus_phage	5.0e-129	100.0
AOH61939.2\|2127408_2127591_-	hypothetical protein	A0A0H3U4Z4	Staphylococcus_phage	4.1e-27	100.0
AOH61503.1\|2127794_2128136_-	hypothetical protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
AOH60709.1\|2128141_2129074_-	ATP-dependent helicase	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
AOH61935.1\|2129089_2129803_-	XRE family transcriptional regulator	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
AVG21225.1\|2129765_2129939_+	transcriptional regulator	NA	NA	NA	NA
AOH61195.1\|2129935_2130199_+	XRE family transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
AVG21226.1\|2130214_2130430_+	DUF2829 domain-containing protein	A0A0H3U4C7	Staphylococcus_phage	4.8e-35	100.0
AOH61460.1\|2130418_2130748_-	hypothetical protein	A0A0H3U4Z1	Staphylococcus_phage	4.6e-53	100.0
AOH60604.1\|2130798_2131551_+	oxidoreductase	A0A0H3U319	Staphylococcus_phage	5.6e-139	100.0
AOH62523.2\|2131739_2131970_-	hypothetical protein	A0A0H3U2T9	Staphylococcus_phage	9.4e-37	100.0
AOH60270.1\|2132028_2132349_+	DUF771 domain-containing protein	A0A0H3U4C3	Staphylococcus_phage	1.5e-56	100.0
AVG21227.1\|2132345_2132507_+	DUF1270 domain-containing protein	A0A0H3U4Y7	Staphylococcus_phage	3.8e-21	100.0
AOH61700.1\|2132601_2132862_+	hypothetical protein	A0A0H3U2W4	Staphylococcus_phage	9.3e-41	100.0
AOH60867.1\|2132901_2133162_+	DUF1108 domain-containing protein	A0A0H3U2T6	Staphylococcus_phage	6.8e-44	100.0
AVG21228.1\|2133170_2133434_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
AOH62563.1\|2133442_2135386_+	ATPase	A0A2I6PDH3	Staphylococcus_phage	0.0e+00	94.7
AOH63120.1\|2135387_2136308_+	recombinase	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
AOH60392.2\|2136388_2137006_+	MBL fold metallo-hydrolase	A0A0H3U2T4	Staphylococcus_phage	4.1e-87	100.0
AOH62559.1\|2137006_2137477_+	single-stranded DNA-binding protein	A0A0H3U4B5	Staphylococcus_phage	4.4e-81	100.0
AOH61052.1\|2137506_2138400_+	DnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	3.2e-141	100.0
AOH61863.1\|2138406_2138625_+	hypothetical protein	A0A2I6PDG4	Staphylococcus_phage	1.0e-37	100.0
AOH60431.1\|2138633_2139038_+	RusA family crossover junction endodeoxyribonuclease	A0A0H3U2W2	Staphylococcus_phage	1.4e-72	100.0
AOH61862.1\|2139050_2139419_+	hypothetical protein	A0A0H3U2T3	Staphylococcus_phage	2.0e-49	100.0
AOH61997.2\|2139422_2139665_+	hypothetical protein	A0A0H3U4B0	Staphylococcus_phage	1.1e-40	100.0
AOH62723.2\|2139673_2140045_+	acetyltransferase	A0A0H3U4X7	Staphylococcus_phage	4.7e-54	97.3
AOH63146.1\|2140037_2140274_+	DUF1024 domain-containing protein	A0A0H3U313	Staphylococcus_phage	5.3e-35	100.0
AOH61149.1\|2140263_2140506_+	hypothetical protein	A0A2I6PF40	Staphylococcus_phage	3.7e-36	100.0
AOH61475.2\|2140498_2141032_+	dUTP pyrophosphatase	A0A0H3U2T1	Staphylococcus_phage	1.6e-95	100.0
AOH61328.1\|2141068_2141314_+	hypothetical protein	A0A2I6PDW7	Staphylococcus_phage	5.0e-36	100.0
AOH61186.1\|2141310_2141517_+	DUF1381 domain-containing protein	A0A0H3U2R7	Staphylococcus_phage	1.3e-29	100.0
AOH60715.1\|2141513_2141900_+	hypothetical protein	W5R986	Staphylococcus_phage	3.0e-64	100.0
AOH62408.1\|2141896_2142046_+	transcriptional regulator	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
AOH63035.1\|2142045_2142246_+	hypothetical protein	A0A2I6PDV9	Staphylococcus_phage	1.4e-28	100.0
AOH60401.2\|2142273_2142690_+	transcriptional regulator	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
AOH61476.1\|2142921_2143221_+	HNH endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
AOH60978.1\|2143350_2143695_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
AOH62330.1\|2143691_2145353_+\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
AOH60821.1\|2145368_2146556_+\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
AOH62878.1\|2146539_2147277_+\|protease	Clp protease ClpP	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
AOH61810.1\|2147300_2148446_+\|capsid	phage major capsid protein	G4KNQ3	Staphylococcus_phage	9.6e-215	100.0
AOH63040.1\|2148465_2148750_+	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
AOH61360.1\|2148739_2149024_+\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
AOH61665.1\|2149007_2149370_+\|head,tail	phage head-tail adapter protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2149108:2149125	attR	NA	NA	NA	NA
AOH61001.1\|2149366_2149771_+	hypothetical protein	A0A0H3U2V1	Staphylococcus_phage	8.7e-70	100.0
AVG21229.1\|2149767_2150172_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	1.4e-67	95.5
AOH60296.1\|2150175_2150820_+\|tail	phage tail protein	A0A0H3U4E6	Staphylococcus_phage	6.5e-120	100.0
AVG21230.1\|2150846_2151086_+	hypothetical protein	A0A075LYE8	Staphylococcus_phage	4.0e-30	94.6
AOH62730.1\|2151135_2151486_+	hypothetical protein	A0A0H3U503	Staphylococcus_phage	1.3e-58	100.0
AOH60680.1\|2151730_2156260_+\|tail	phage tail tape measure protein	A0A1X9H084	Staphylococcus_phage	0.0e+00	95.0
AOH62392.2\|2156256_2157741_+\|tail	phage tail protein	A0A0H3U501	Staphylococcus_phage	2.0e-297	100.0
AOH62653.1\|2157756_2161542_+	hypothetical protein	A0A1X9H0H3	Staphylococcus_phage	0.0e+00	98.5
AOH61390.1\|2161531_2161684_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
AOH62778.1\|2161730_2162018_+	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
AOH60708.1\|2162075_2162372_+	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
AOH62881.2\|2162521_2162698_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
AVG21231.1\|2162750_2162858_-	hypothetical protein	NA	NA	NA	NA
AOH62648.1\|2162909_2163164_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
AOH62500.1\|2163175_2163931_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
AOH61943.1\|2164121_2164613_+	staphylokinase	A0A1X9H028	Staphylococcus_phage	9.5e-87	100.0
AVG21232.1\|2165139_2165598_+	amidase	R9QTN8	Staphylococcus_phage	4.9e-85	98.7
AOH62051.2\|2165692_2166142_-	chemotaxis inhibitory protein	A0A1P8L6A8	Staphylococcus_phage	1.1e-78	100.0
AOH61672.1\|2166826_2167177_+	inhibitor	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
AOH63114.2\|2167229_2167490_-	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
AVG21233.1\|2167468_2167777_-	hypothetical protein	M9NTD8	Staphylococcus_phage	2.1e-39	100.0
AVG21234.1\|2167800_2167980_-	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
AOH61512.2\|2168351_2168552_-	hypothetical protein	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
AOH61795.1\|2168937_2170692_+	MAP domain-containing protein	NA	NA	NA	NA
AVG21235.1\|2170702_2170993_+	MAP domain-containing protein	NA	NA	NA	NA
AOH61459.1\|2171316_2172603_-	aspartate aminotransferase	NA	NA	NA	NA
AVG21236.1\|2172802_2172901_+	hypothetical protein	NA	NA	NA	NA
AOH62285.1\|2173143_2173320_+	hypothetical protein	NA	NA	NA	NA
AOH62376.1\|2173583_2173964_+	GntR family transcriptional regulator	NA	NA	NA	NA
AOH63132.1\|2173960_2174857_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
AOH60752.1\|2174857_2175538_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
AOH60471.1\|2175534_2176407_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
AOH63070.1\|2176406_2177147_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
AOH60808.2\|2177212_2177776_-	thioredoxin family protein	NA	NA	NA	NA
AVG21237.1\|2177896_2178421_+	hypothetical protein	NA	NA	NA	NA
AOH62048.1\|2178480_2179038_+	DUF1700 domain-containing protein	NA	NA	NA	NA
AOH61250.1\|2179034_2179877_+	hypothetical protein	NA	NA	NA	NA
AOH60306.1\|2179933_2180974_-	linear amide C-N hydrolase	NA	NA	NA	NA
AOH62623.1\|2181424_2181598_+	hypothetical protein	NA	NA	NA	NA
AOH62880.1\|2182170_2182572_-	YolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
AOH62816.1\|2182841_2183870_+	hypothetical protein	NA	NA	NA	NA
AOH63019.1\|2183989_2185369_-	aldehyde dehydrogenase	NA	NA	NA	NA
AOH62757.2\|2185420_2185594_+	hypothetical protein	NA	NA	NA	NA
AOH61736.1\|2185788_2186718_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
AOH62676.1\|2186770_2187331_-	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
AOH62626.1\|2187702_2188800_+	pectate lyase	U5PWM6	Bacillus_phage	1.9e-47	34.6
AOH61977.1\|2189004_2190567_+	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA
AVG21238.1\|2190577_2190685_-	hypothetical protein	NA	NA	NA	NA
AOH60333.1\|2190756_2191551_-	ACT domain-containing protein	NA	NA	NA	NA
AOH61483.1\|2191570_2192647_-	nitric oxide synthase oxygenase	NA	NA	NA	NA
AOH62770.2\|2192830_2194300_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	4.5e-108	45.1
AOH61634.1\|2194292_2195114_+	NAD(+) synthetase	G3MA24	Bacillus_virus	1.8e-69	52.7
AOH60910.1\|2195384_2195987_+	DUF2179 domain-containing protein	NA	NA	NA	NA
AOH62930.1\|2195967_2196141_+	NETI motif-containing protein	NA	NA	NA	NA
AOH61584.1\|2196432_2196759_-	staphostatin A	NA	NA	NA	NA
AOH61112.2\|2196789_2197956_-\|protease	cysteine protease staphopain A	NA	NA	NA	NA

DBSCAN-SWA_6

2257928 : 2359143

104

Staphylococcus_phage(89.66%)

transposase,tRNA,bacteriocin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG21248.1\|2257928_2259290_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
AOH61311.1\|2259782_2260844_+	PTS transporter subunit IIC	NA	NA	NA	NA
AOH62854.1\|2261101_2262559_+	ABC transporter permease	NA	NA	NA	NA
AOH63020.2\|2262545_2263274_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-36	42.7
AOH60656.2\|2263409_2264552_+	epoxyqueuosine reductase	NA	NA	NA	NA
AOH61341.2\|2264556_2265027_+\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
AOH61017.1\|2265185_2265785_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA
AOH62166.1\|2265809_2265962_+	hypothetical protein	NA	NA	NA	NA
AVG21249.1\|2266026_2266233_-	hypothetical protein	NA	NA	NA	NA
AVG21250.1\|2266257_2266620_-	hypothetical protein	NA	NA	NA	NA
AOH62646.1\|2266738_2267134_+	hypothetical protein	NA	NA	NA	NA
AOH61438.1\|2267329_2268715_+	class II fumarate hydratase	NA	NA	NA	NA
AOH60523.2\|2269177_2269999_-	RluA family pseudouridine synthase	NA	NA	NA	NA
AOH61399.1\|2270161_2271274_+	histidine kinase	NA	NA	NA	NA
AOH62633.1\|2271295_2271919_+	DNA-binding response regulator	NA	NA	NA	NA
AOH62848.1\|2272274_2272739_+	transcriptional regulator	NA	NA	NA	NA
AOH61027.1\|2272917_2274042_+	DUF445 domain-containing protein	NA	NA	NA	NA
AOH60418.1\|2274110_2274455_+	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7
AVG21251.1\|2274837_2274936_+	hypothetical protein	NA	NA	NA	NA
AVG21252.1\|2275226_2276423_+	exonuclease SbcCD subunit D	NA	NA	NA	NA
AOH61260.1\|2276412_2279349_+	DNA repair protein Rad50	NA	NA	NA	NA
AOH61078.1\|2279345_2280287_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
AOH61652.1\|2280407_2281370_-	foldase	NA	NA	NA	NA
AOH60834.1\|2281574_2282132_-	DUF3267 domain-containing protein	NA	NA	NA	NA
AOH62130.1\|2282864_2283230_-	YtxH domain-containing protein	NA	NA	NA	NA
AOH61561.1\|2283371_2283794_-	HIT family protein	NA	NA	NA	NA
AOH62976.1\|2283927_2284668_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-24	29.8
AOH60598.2\|2284660_2285884_+	multidrug ABC transporter ATP-binding protein	NA	NA	NA	NA
AOH60385.1\|2286007_2286511_-	signal transduction protein TRAP	NA	NA	NA	NA
AVG21253.1\|2286673_2286784_+	hypothetical protein	NA	NA	NA	NA
AOH62808.1\|2286773_2287811_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
AOH62470.1\|2287868_2288792_+	ferrochelatase	NA	NA	NA	NA
AOH62775.1\|2288815_2290216_+	protoporphyrinogen oxidase	NA	NA	NA	NA
AVG21254.1\|2290217_2290445_-	hypothetical protein	NA	NA	NA	NA
AOH61909.1\|2290538_2291093_+	serine hydrolase family protein	NA	NA	NA	NA
AOH62859.2\|2294349_2294889_-	hypothetical protein	Q4ZCB9	Staphylococcus_virus	2.0e-61	76.8
AOH60952.1\|2295687_2296623_+	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	1.4e-174	100.0
AOH62835.2\|2296624_2297608_+	bi-component leukocidin LukED subunit D	A0A2H4PQH7	Staphylococcus_phage	2.3e-185	99.1
AVG21255.1\|2297849_2297993_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA
AVG21256.1\|2298094_2298286_-	hypothetical protein	NA	NA	NA	NA
AOH61589.1\|2298729_2298873_+	gallidermin/nisin family lantibiotic	A0A2H4PQH4	Staphylococcus_phage	5.3e-14	80.9
AOH60853.2\|2298937_2301931_+\|bacteriocin	bacteriocin biosynthesis protein	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	97.3
AOH62191.1\|2301923_2303168_+	lanthionine synthetase	A0A2H4PQH9	Staphylococcus_phage	5.1e-238	100.0
AOH62162.1\|2303183_2303702_+	enterotoxin	A0A2H4PQG9	Staphylococcus_phage	2.0e-95	100.0
AVG21257.1\|2303711_2305085_+	peptidase S8	A0A2H4PQH1	Staphylococcus_phage	2.9e-258	100.0
AOH61737.1\|2305107_2305800_+	lantibiotic ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.2e-124	100.0
AOH60300.1\|2305796_2306558_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	A0A2H4PQH2	Staphylococcus_phage	4.4e-131	100.0
AOH62281.1\|2306554_2307253_+	BsaG protein	A0A2H4PQH0	Staphylococcus_phage	3.8e-113	94.4
AOH60551.1\|2307726_2308293_-	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	3.3e-99	100.0
AVG21258.1\|2308602_2308821_+	hypothetical protein	NA	NA	NA	NA
AOH62696.1\|2309256_2309964_+\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	2.6e-130	100.0
AOH61479.1\|2310088_2310811_+\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	2.4e-131	99.6
AOH62293.1\|2310868_2311588_+\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.2e-130	99.2
AOH62771.1\|2311708_2312428_+\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
AVG21259.1\|2312376_2312484_-	hypothetical protein	NA	NA	NA	NA
AOH60981.1\|2312585_2313302_+\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	1.1e-131	100.0
AOH60980.1\|2313452_2314172_+\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.1e-131	100.0
AVG21260.1\|2314236_2314371_+	hypothetical protein	NA	NA	NA	NA
AOH60593.2\|2314351_2316091_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	4.4e-288	99.4
AOH61207.2\|2316083_2317283_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	5.5e-229	99.7
AVG21261.1\|2318132_2322245_+	ATP-binding protein	A0A2H4PQT3	Staphylococcus_phage	0.0e+00	100.0
AVG21358.1\|2322783_2323143_+	DUF1433 domain-containing protein	NA	NA	NA	NA
AVG21262.1\|2323490_2323592_-	hypothetical protein	NA	NA	NA	NA
AOH62586.1\|2324012_2324156_+	hypothetical protein	A0A2H4PQU1	Staphylococcus_phage	6.4e-20	100.0
AVG21263.1\|2324358_2324568_+\|transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	1.4e-31	100.0
AOH60723.1\|2324759_2325143_+	hypothetical protein	NA	NA	NA	NA
AOH61528.1\|2325153_2325330_+	hypothetical protein	NA	NA	NA	NA
AOH62847.1\|2325331_2325517_+	hypothetical protein	NA	NA	NA	NA
AOH61774.2\|2325630_2326272_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	2.6e-76	93.2
AOH60687.1\|2326489_2327041_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	1.0e-20	94.1
AOH61236.1\|2327138_2327483_-	DUF3969 domain-containing protein	A0A2H4PQN6	Staphylococcus_phage	6.3e-53	92.0
AOH62694.1\|2327523_2327994_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	7.0e-63	80.1
AOH61644.1\|2328225_2329221_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	7.1e-73	96.4
AOH61619.2\|2329301_2329952_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	2.7e-44	88.4
AOH61565.2\|2330254_2330710_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.0e-79	98.6
AOH61192.2\|2330868_2332347_+	2-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.0e-281	97.0
AOH60985.1\|2332351_2333353_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	4.8e-186	97.6
AOH62789.1\|2333349_2333607_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
AOH62885.2\|2333672_2334146_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.7e-83	98.1
AOH61836.2\|2334150_2334897_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	7.1e-142	98.4
AOH62409.1\|2335892_2337485_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AOH63117.2\|2337855_2339049_+	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
AOH63153.1\|2339173_2340082_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.2e-136	98.7
AOH60493.1\|2340293_2341127_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	9.6e-156	98.6
AVG21264.1\|2341189_2342827_-\|transposase	IS5/IS1182 family transposase	A0ZS58	Staphylococcus_virus	2.6e-282	96.7
AOH61728.1\|2343222_2343576_-	camphor resistance protein CrcB	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	99.1
AOH61752.1\|2343572_2343938_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.4e-58	99.2
AOH62499.1\|2344193_2344496_-	hypothetical protein	NA	NA	NA	NA
AOH61602.1\|2344755_2345469_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AOH62643.1\|2345908_2346544_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVG21265.1\|2346839_2347283_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	3.0e-55	85.0
AVG21266.1\|2347269_2347713_-	competence protein ComK	NA	NA	NA	NA
AOH61525.1\|2347825_2348296_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
AOH61590.1\|2348494_2348719_+	hypothetical protein	NA	NA	NA	NA
AOH62667.1\|2348994_2349849_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AOH63144.1\|2350143_2350539_-	protein ArsC	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
AOH62402.1\|2350556_2351849_-	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AVG21267.1\|2351848_2352163_-	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	2.0e-53	100.0
AOH61243.1\|2352685_2354188_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
AOH61854.2\|2354680_2355712_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.8e-197	99.4
AOH62820.1\|2355718_2356351_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
AOH61532.1\|2356361_2357543_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
AOH61859.1\|2357555_2358020_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
AOH63065.2\|2358141_2359143_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7

DBSCAN-SWA_7

2362303 : 2375032

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOH63045.1\|2362303_2362867_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AOH61040.1\|2362863_2363817_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
AOH60974.2\|2363926_2365108_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
AOH61383.2\|2365395_2367813_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.2
AOH63079.1\|2367834_2368146_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
AVG21269.1\|2368471_2375032_+	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	2.0e-304	98.1

DBSCAN-SWA_8

2500488 : 2509531

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOH62247.2\|2500488_2501493_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AOH61251.1\|2501494_2502520_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AOH60368.1\|2502542_2503682_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AOH60729.1\|2503700_2503961_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AOH61666.1\|2504235_2506515_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
AOH61098.2\|2506717_2508991_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.2e-62	28.8
AOH61539.1\|2509012_2509531_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_9

2578668 : 2586980

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOH62900.1\|2578668_2580468_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.6e-54	36.0
AOH62441.2\|2580691_2581798_+	RNA polymerase sigma factor SigA	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AOH62123.2\|2581928_2582606_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
AOH60594.1\|2582608_2583709_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
AOH61577.1\|2583822_2585169_+	DEAD/DEAH box family ATP-dependent RNA helicase	A0A1V0SIR5	Klosneuvirus	5.3e-55	33.7
AOH62765.1\|2585178_2586069_+	endonuclease	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
AOH62196.1\|2586194_2586980_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3

DBSCAN-SWA_10

2642811 : 2694000

Staphylococcus_phage(96.97%)

protease,terminase,tail,integrase,capsid,head,holin,portal

attL 2647774:2647794|attR 2693666:2693686

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOH62050.2\|2642811_2644563_+	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	1.7e-21	33.6
AOH62328.1\|2644807_2645737_+	DUF1672 domain-containing protein	NA	NA	NA	NA
AOH60892.1\|2645729_2646575_+	hypothetical protein	NA	NA	NA	NA
AOH63067.1\|2646601_2647756_+	hypothetical protein	B5WZK7	Staphylococcus_phage	3.9e-115	97.7
2647774:2647794	attL	NA	NA	NA	NA
AOH60694.1\|2647798_2649004_-\|integrase	site-specific integrase	A0A2I6PEN0	Staphylococcus_phage	7.7e-223	100.0
AVG21307.1\|2649129_2649744_+	ATPase	A0A2I6PEZ0	Staphylococcus_phage	6.7e-106	100.0
AOH62173.2\|2649740_2649887_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.2e-16	100.0
AOH61662.1\|2649976_2650372_-	hypothetical protein	A0A2I6PEJ7	Staphylococcus_phage	3.8e-70	100.0
AOH61950.1\|2650400_2650835_-	hypothetical protein	A0A2I6PEM0	Staphylococcus_phage	3.6e-21	96.5
AOH62954.2\|2650852_2651314_-	toxin	A0A2I6PEK4	Staphylococcus_phage	2.9e-85	98.7
AOH60263.1\|2651326_2651656_-	XRE family transcriptional regulator	A0A2I6PEN2	Staphylococcus_phage	3.2e-54	100.0
AOH62350.1\|2651816_2652008_+	XRE family transcriptional regulator	A0A2I6PEL6	Staphylococcus_phage	2.3e-28	100.0
AOH61538.2\|2652264_2652504_-	hypothetical protein	A0A2I6PE22	Staphylococcus_phage	6.7e-38	100.0
AOH60764.1\|2652550_2652766_+	hypothetical protein	A0A2I6PEK7	Staphylococcus_phage	1.0e-32	100.0
AOH60805.1\|2652790_2653054_+	helix-turn-helix domain-containing protein	A0A2I6PEL8	Staphylococcus_phage	2.5e-46	100.0
AOH60590.2\|2653319_2653637_+	hypothetical protein	A0A2I6PEL3	Staphylococcus_phage	1.1e-35	100.0
AOH61079.1\|2653629_2653932_+	hypothetical protein	A0A1X9IGX2	Staphylococcus_phage	2.4e-48	100.0
AOH62139.2\|2653912_2654197_+	DUF1108 domain-containing protein	A0A2I6PEM2	Staphylococcus_phage	1.5e-47	100.0
AOH62176.1\|2654210_2654573_+	hypothetical protein	A0A2I6PEM7	Staphylococcus_phage	3.7e-56	100.0
AOH61257.1\|2654569_2655736_+	DUF2800 domain-containing protein	A0A2I6PEL9	Staphylococcus_phage	1.4e-221	100.0
AOH63127.1\|2655761_2656319_+	DUF2815 domain-containing protein	A0A2I6PEP8	Staphylococcus_phage	1.8e-97	100.0
AOH60346.1\|2656386_2658339_+	DNA polymerase	A0A2I6PEL4	Staphylococcus_phage	0.0e+00	100.0
AOH62287.1\|2658351_2658537_+	DUF3113 domain-containing protein	A0A2I6PEM8	Staphylococcus_phage	7.0e-27	100.0
AOH63131.1\|2658536_2658938_+	PVL family protein	A0A2I6PEL5	Staphylococcus_phage	1.2e-68	100.0
AOH62302.1\|2658937_2659195_+	DUF3310 domain-containing protein	A0A2I6PEN5	Staphylococcus_phage	2.6e-43	100.0
AOH62490.2\|2659197_2659398_+	hypothetical protein	A0A2I6PEM3	Staphylococcus_phage	2.5e-30	100.0
AOH61927.1\|2659412_2659655_+	hypothetical protein	A0A2I6PEV3	Staphylococcus_phage	1.5e-40	100.0
AOH61488.1\|2659669_2659918_+	DUF1024 domain-containing protein	A0A2I6PEP2	Staphylococcus_phage	1.4e-38	100.0
AOH61056.1\|2659910_2660447_+	dUTPase	A0A2I6PEN6	Staphylococcus_phage	1.6e-95	100.0
AOH60481.1\|2660483_2660690_+	DUF1381 domain-containing protein	A0A2I6PEM9	Staphylococcus_phage	1.6e-19	100.0
AVG21308.1\|2660686_2660890_+	hypothetical protein	A0A2I6PEQ8	Staphylococcus_phage	3.4e-30	100.0
AOH62622.1\|2660882_2661119_+	hypothetical protein	A0A2I6PEM4	Staphylococcus_phage	2.8e-36	100.0
AOH62055.1\|2661111_2661498_+	hypothetical protein	A0A1X9IGZ2	Staphylococcus_phage	3.0e-64	100.0
AOH60833.1\|2661494_2661647_+	transcriptional regulator	A0A2I6PEM5	Staphylococcus_phage	2.0e-19	100.0
AOH61062.1\|2661714_2661915_+	DUF1514 domain-containing protein	A0A2I6PEP5	Staphylococcus_phage	4.9e-26	100.0
AVG21309.1\|2661941_2662148_-	hypothetical protein	A0A1X9IGZ9	Staphylococcus_phage	7.6e-30	100.0
AOH61014.1\|2662202_2664650_+	hypothetical protein	A0A2I6PEP4	Staphylococcus_phage	0.0e+00	100.0
AVG21310.1\|2664758_2664857_-	hypothetical protein	A0A2I6PDP6	Staphylococcus_phage	3.7e-11	100.0
AOH61043.1\|2664990_2665281_+	VRR-NUC domain-containing protein	A0A2I6PE31	Staphylococcus_phage	6.5e-51	100.0
AOH61610.1\|2666640_2667078_+	transcriptional regulator	A0A2I6PEN3	Staphylococcus_phage	7.9e-77	100.0
AOH61958.1\|2667234_2667549_+	HNH endonuclease	A0A2I6PEN4	Staphylococcus_phage	5.0e-57	100.0
AOH62254.1\|2667675_2667981_+\|terminase	phage terminase small subunit P27 family	A0A2I6PEQ6	Staphylococcus_phage	2.9e-49	100.0
AOH60480.1\|2667970_2669662_+\|terminase	terminase large subunit	A0A1X9IGU0	Staphylococcus_phage	0.0e+00	100.0
AOH61381.1\|2669666_2670905_+\|portal	phage portal protein	A0A2I6PER5	Staphylococcus_phage	6.9e-235	100.0
AOH61637.1\|2670888_2671662_+\|protease	Clp protease ClpP	A0A2I6PEQ7	Staphylococcus_phage	2.4e-137	100.0
AOH60299.1\|2671673_2672837_+\|capsid	phage major capsid protein	A0A2I6PEQ3	Staphylococcus_phage	1.2e-217	100.0
AOH61105.1\|2672905_2673184_+\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-46	100.0
AOH60710.1\|2673195_2673528_+	hypothetical protein	A0A2I6PES3	Staphylococcus_phage	4.1e-57	100.0
AOH60317.1\|2673524_2673926_+	hypothetical protein	A0A2I6PF54	Staphylococcus_phage	8.1e-68	100.0
AOH61066.1\|2673926_2674322_+	DUF3168 domain-containing protein	A0A2I6PEQ4	Staphylococcus_phage	8.8e-67	100.0
AOH61934.1\|2674356_2674998_+\|tail	phage tail protein	A0A2I6PEP6	Staphylococcus_phage	5.9e-121	100.0
AOH60958.1\|2675089_2675545_+\|tail	phage tail protein	A0A2I6PER6	Staphylococcus_phage	5.7e-78	100.0
AOH62167.1\|2675602_2675953_+	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	1.1e-55	100.0
AOH62433.1\|2675994_2676153_+	hypothetical protein	A0A2I6PES8	Staphylococcus_phage	1.2e-19	100.0
AOH62833.2\|2676166_2682367_+\|tail	phage tail tape measure protein	A0A1X9IGU9	Staphylococcus_phage	0.0e+00	99.7
AOH60762.1\|2682366_2683191_+\|tail	phage tail family protein	A0A2I6PER3	Staphylococcus_phage	4.1e-159	100.0
AVG21311.1\|2683199_2684783_+	peptidase	A0A2I6PEQ5	Staphylococcus_phage	9.3e-309	100.0
AOH62691.1\|2684782_2685073_+	hypothetical protein	U5U457	Staphylococcus_phage	2.1e-49	100.0
AOH60989.1\|2685088_2686999_+	hypothetical protein	A0A2I6PEQ9	Staphylococcus_phage	0.0e+00	100.0
AVG21312.1\|2686998_2688465_+	DUF2479 domain-containing protein	A0A2I6PES7	Staphylococcus_phage	1.5e-273	100.0
AOH61579.1\|2688464_2688854_+	hypothetical protein	A0A2I6PER1	Staphylococcus_phage	2.2e-62	100.0
AOH60496.1\|2688846_2689011_+	XkdX family protein	A0A2I6PES4	Staphylococcus_phage	4.9e-24	100.0
AOH63029.1\|2689056_2689356_+	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AOH61761.1\|2689491_2689794_+\|holin	phage holin	A0A2I6PET6	Staphylococcus_phage	7.0e-48	100.0
AVG21313.1\|2689804_2691259_+	CHAP domain-containing protein	A0A2I6PET7	Staphylococcus_phage	5.7e-289	100.0
AOH61023.1\|2691648_2692587_+	Panton-Valentine bi-component leukocidin subunit S	A0A2I6PER8	Staphylococcus_phage	3.7e-180	100.0
AOH61991.2\|2692582_2693566_+	Panton-Valentine bi-component leukocidin subunit F	A0A2I6PEU3	Staphylococcus_phage	4.0e-185	100.0
AOH62242.2\|2693748_2694000_+	hypothetical protein	A0ZS61	Staphylococcus_virus	2.4e-25	100.0
2693666:2693686	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP016859

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP016857

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP016858

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP016859

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection