CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP017188	Xanthomonas citri pv. glycines str. 8ra chromosome, complete genome	0 crisprs	WYL,DEDDh,csa3,RT,cas3,DinG	0	0	8	0
CP017189	Xanthomonas citri pv. glycines str. 8ra plasmid pXAG27.8ra, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

439333 : 463249

Shigella_phage(100.0%)

transposase,integrase

attL 437836:437850|attR 460579:460593

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
437836:437850	attL	NA	NA	NA	NA
AZB52676.1\|439333_440478_-\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
AZB52477.1\|440814_444819_+	avirulence protein	NA	NA	NA	NA
AOY64698.2\|445126_445618_-	hypothetical protein	NA	NA	NA	NA
AOY64697.2\|445807_446952_-\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
AZB52478.1\|447288_450885_+	Avirulence protein AvrBs3	NA	NA	NA	NA
AOY64696.2\|451192_451684_-	hypothetical protein	NA	NA	NA	NA
AOY64695.2\|451873_453018_-\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
AOY64694.1\|453354_456849_+	Avirulence protein AvrBs3	NA	NA	NA	NA
AOY64693.2\|457156_457648_-	hypothetical protein	NA	NA	NA	NA
AOY64692.2\|457837_458982_-\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
AOY64691.2\|459008_459413_+\|integrase	integrase	NA	NA	NA	NA
AOY64690.1\|459664_461503_-	dihydroxy-acid dehydratase	NA	NA	NA	NA
460579:460593	attR	NA	NA	NA	NA
AOY64689.1\|461887_463249_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1232611 : 1304519

Stenotrophomonas_phage(57.5%)

integrase,protease,portal,terminase,capsid,tail,plate,head,holin

attL 1225884:1225901|attR 1265293:1265310

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1225884:1225901	attL	NA	NA	NA	NA
AOY64087.1\|1232611_1234693_+\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA
AZB52682.1\|1235297_1235366_+	hypothetical protein	NA	NA	NA	NA
AOY64085.1\|1235570_1236215_+	histidine phosphatase family protein	NA	NA	NA	NA
AOY64084.1\|1236483_1237782_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
AOY64083.1\|1237849_1238884_+	SPOR domain-containing protein	NA	NA	NA	NA
AOY64082.1\|1239097_1239844_+	CvpA family protein	NA	NA	NA	NA
AOY64081.1\|1239874_1241341_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.1e-85	39.9
AOY64080.1\|1241536_1242361_+	DUF455 domain-containing protein	NA	NA	NA	NA
AZB52502.1\|1242504_1242714_+	hypothetical protein	NA	NA	NA	NA
AOY64079.1\|1244332_1244752_+	hypothetical protein	NA	NA	NA	NA
AOY64078.1\|1244937_1245681_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
AOY64077.1\|1246160_1246703_-	phosphatase PAP2 family protein	NA	NA	NA	NA
AOY64076.1\|1246683_1247820_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
AOY64075.1\|1248042_1249569_-	exopolyphosphatase	NA	NA	NA	NA
AOY64074.1\|1249740_1251843_-	polyphosphate kinase 1	NA	NA	NA	NA
AOY64073.2\|1251955_1253299_-	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	6.5e-29	33.3
AOY64072.1\|1253356_1254046_-	phosphate regulon transcriptional regulatory protein PhoB	W8CYM9	Bacillus_phage	1.0e-33	35.7
AOY64071.1\|1254228_1255875_-	M48 family peptidase	NA	NA	NA	NA
AOY64070.1\|1256024_1256333_+	glutaredoxin 3	A0A2L0UZG6	Agrobacterium_phage	3.6e-07	43.2
AOY64069.1\|1256329_1256725_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
AOY64068.1\|1256950_1257958_+	NAD-dependent isocitrate dehydrogenase	NA	NA	NA	NA
AOY64067.1\|1258097_1258859_-	hypothetical protein	NA	NA	NA	NA
AOY64065.2\|1260189_1261146_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	1.7e-92	55.3
AZB52503.1\|1261370_1261592_-	hypothetical protein	V9IQX6	Stenotrophomonas_phage	1.6e-14	56.3
AOY64064.1\|1261588_1261798_-	hypothetical protein	NA	NA	NA	NA
AOY64063.2\|1261794_1261998_-	hypothetical protein	NA	NA	NA	NA
AOY64062.1\|1262063_1262288_-	hypothetical protein	NA	NA	NA	NA
AOY64061.1\|1262284_1262557_-	hypothetical protein	NA	NA	NA	NA
AOY64060.1\|1262549_1262732_-	hypothetical protein	NA	NA	NA	NA
AOY64059.2\|1262724_1263099_-	hypothetical protein	V9IQL6	Stenotrophomonas_phage	1.7e-19	48.8
AOY64058.1\|1263228_1263501_-	hypothetical protein	NA	NA	NA	NA
AOY64057.1\|1263500_1263788_-	hypothetical protein	NA	NA	NA	NA
AOY64056.1\|1263784_1264003_-	hypothetical protein	NA	NA	NA	NA
AOY64055.2\|1264323_1266996_-	bifunctional DNA primase/helicase	V9IQW5	Stenotrophomonas_phage	0.0e+00	69.7
1265293:1265310	attR	NA	NA	NA	NA
AOY64054.1\|1267028_1267241_-	hypothetical protein	NA	NA	NA	NA
AOY64053.1\|1267237_1267516_-	hypothetical protein	NA	NA	NA	NA
AOY64052.1\|1267526_1267847_-	hypothetical protein	V9IQW3	Stenotrophomonas_phage	2.0e-24	58.7
AZB52683.1\|1267849_1268098_-	hypothetical protein	NA	NA	NA	NA
AOY64051.1\|1268183_1268615_+	transcriptional regulator	E5E3U2	Burkholderia_phage	1.4e-09	38.2
AOY64050.1\|1269221_1270208_-	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	2.8e-93	55.7
AOY64049.1\|1270204_1270606_-	oxidoreductase	V9IQX3	Stenotrophomonas_phage	3.5e-39	61.4
AOY64048.1\|1270618_1273489_-\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	8.9e-193	47.1
AZB52504.1\|1273518_1273632_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	4.2e-06	68.6
AOY64047.1\|1273640_1273943_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	2.2e-25	67.4
AOY64046.1\|1273988_1274498_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	2.1e-73	81.1
AOY64045.1\|1274527_1275694_-\|tail	phage tail protein	E5FFG9	Burkholderia_phage	1.1e-133	63.2
AOY64044.1\|1275705_1276065_-\|plate	baseplate assembly protein	V9IQW0	Stenotrophomonas_phage	2.1e-35	62.7
AOY64043.1\|1276061_1276625_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	8.2e-26	47.0
AOY64042.1\|1276767_1277442_-	hypothetical protein	NA	NA	NA	NA
AOY64041.1\|1277444_1277738_-	hypothetical protein	NA	NA	NA	NA
AOY64040.1\|1277811_1279611_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	8.9e-82	37.6
AOY64039.1\|1279623_1280166_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.1e-51	56.6
AOY64038.1\|1280158_1281049_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	2.6e-82	53.0
AZB52505.1\|1281144_1282683_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
AOY64037.1\|1282864_1283314_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	6.3e-37	56.5
AOY64036.1\|1283301_1283721_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	1.1e-40	65.2
AOY64035.1\|1283717_1284206_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	1.2e-28	52.6
AOY64034.2\|1284205_1284847_-	lysozyme	V9IQK6	Stenotrophomonas_phage	2.7e-49	60.4
AOY64033.1\|1284843_1285119_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	1.3e-21	59.8
AOY64032.1\|1285111_1285468_-	hypothetical protein	V9IQG9	Stenotrophomonas_phage	3.5e-22	56.1
AOY64031.1\|1285472_1285682_-\|tail	phage tail protein	K4PAW7	Burkholderia_phage	7.0e-15	59.4
AOY64030.1\|1285681_1286149_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	4.6e-30	49.7
AOY64029.1\|1286247_1286967_-\|terminase	terminase	Q9ZXM2	Pseudomonas_virus	5.3e-70	63.8
AOY64028.1\|1286970_1287984_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	9.3e-137	71.4
AOY64027.1\|1288030_1288873_-\|capsid	phage capsid protein	A0A2H4J928	uncultured_Caudovirales_phage	3.4e-68	53.5
AOY64026.1\|1288994_1290779_+\|terminase	terminase	V9IQL5	Stenotrophomonas_phage	7.3e-270	76.5
AOY64025.1\|1290778_1291792_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	5.8e-139	71.9
AZB52506.1\|1291817_1292063_+	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	7.0e-14	51.2
AOY64023.1\|1291980_1292682_+	site-specific DNA-methyltransferase	V9IQV5	Stenotrophomonas_phage	2.1e-103	75.5
AZB52507.1\|1292854_1293271_-	N-acetyltransferase	NA	NA	NA	NA
AOY64982.1\|1294198_1295098_-	hypothetical protein	NA	NA	NA	NA
AOY64022.2\|1296239_1297361_-	(p)ppGpp synthetase	A0A1B0VBT5	Salmonella_phage	1.9e-29	29.4
AOY64021.1\|1298368_1298698_+	hypothetical protein	NA	NA	NA	NA
AOY64020.1\|1298883_1299081_-	hypothetical protein	NA	NA	NA	NA
AOY64018.1\|1301095_1302388_+	trigger factor	NA	NA	NA	NA
AOY64017.1\|1302480_1303107_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.0e-56	57.4
AOY64016.1\|1303232_1304519_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.3e-137	59.9

DBSCAN-SWA_3

2036778 : 2047615

Micromonas_pusilla_virus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOY63442.1\|2036778_2038455_+	2-polyprenylphenol 6-hydroxylase	G8DDN0	Micromonas_pusilla_virus	1.9e-41	29.4
AOY63441.1\|2038540_2039182_+	LexA family transcriptional regulator	A0A1W6JNS2	Morganella_phage	2.4e-13	40.2
AOY63440.1\|2039354_2040389_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	5.1e-114	61.3
AOY63439.1\|2040700_2041189_+	regulatory protein RecX	NA	NA	NA	NA
AOY63438.1\|2041290_2043939_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.7e-84	40.0
AOY63437.1\|2044078_2044291_+	carbon storage regulator	J7I430	Pseudomonas_phage	1.3e-13	76.5
AOY64935.2\|2044511_2044736_-	AlpA family phage regulatory protein	NA	NA	NA	NA
AOY64934.1\|2044722_2044944_-	hypothetical protein	NA	NA	NA	NA
AOY63436.1\|2045077_2045296_-	hypothetical protein	NA	NA	NA	NA
AOY63435.1\|2045292_2045736_-	hypothetical protein	NA	NA	NA	NA
AOY63434.1\|2045732_2045951_-	hypothetical protein	NA	NA	NA	NA
AOY63433.1\|2045947_2046703_-	hypothetical protein	NA	NA	NA	NA
AOY63432.1\|2046706_2047615_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	3.1e-43	33.9

DBSCAN-SWA_4

2067695 : 2094171

Xanthomonas_phage(21.43%)

integrase,portal,terminase,capsid,tail,head

attL 2090366:2090380|attR 2097050:2097064

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOY63401.1\|2067695_2068352_+	DNA primase	A0A248XCW5	Klebsiella_phage	2.4e-37	44.5
AOY63400.1\|2068348_2068852_+	hypothetical protein	Q2NPA5	Xanthomonas_phage	1.6e-20	40.0
AOY63399.1\|2068848_2069127_+	hypothetical protein	NA	NA	NA	NA
AOY63397.1\|2070633_2072721_+\|terminase	terminase	A5LH27	Enterobacteria_phage	2.3e-153	42.5
AOY63396.1\|2072722_2072938_+	hypothetical protein	B7SYD5	Stenotrophomonas_phage	8.0e-06	41.9
AOY63395.1\|2072930_2074433_+\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	4.2e-109	48.3
AOY63394.1\|2074422_2075826_+	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	1.2e-41	45.9
AOY63393.1\|2075828_2076500_+\|head	head decoration protein	NA	NA	NA	NA
AOY63392.1\|2076571_2077576_+\|capsid	minor capsid protein E	A0A2H4J890	uncultured_Caudovirales_phage	1.6e-56	40.8
AOY63391.1\|2077623_2078400_+	hypothetical protein	A0A291AUT0	Sinorhizobium_phage	7.3e-25	34.9
AOY63390.1\|2078396_2078717_+	hypothetical protein	NA	NA	NA	NA
AOY63389.1\|2078709_2079141_+	hypothetical protein	NA	NA	NA	NA
AOY63388.1\|2079180_2079924_+	hypothetical protein	NA	NA	NA	NA
AOY63387.1\|2079920_2080400_+	hypothetical protein	NA	NA	NA	NA
AOY63386.1\|2080561_2083279_+\|tail	phage tail tape measure protein	C4ML16	Xanthomonas_virus	2.4e-94	34.0
AOY63385.1\|2083278_2083635_+	hypothetical protein	Q52PL1	Xanthomonas_phage	1.6e-19	44.4
AOY63384.1\|2083631_2084099_+	DUF1833 domain-containing protein	Q52PL0	Xanthomonas_phage	8.0e-35	46.5
AOY63383.1\|2084098_2084491_+	hypothetical protein	Q2NPH1	Xanthomonas_virus	4.1e-32	52.8
AOY63382.1\|2084481_2088882_+	hypothetical protein	C4ML20	Xanthomonas_virus	0.0e+00	50.7
AOY63381.1\|2088878_2089190_+	hypothetical protein	NA	NA	NA	NA
AOY63380.2\|2089227_2089869_+	hypothetical protein	NA	NA	NA	NA
AOY63379.1\|2089870_2090521_+	hypothetical protein	NA	NA	NA	NA
2090366:2090380	attL	NA	NA	NA	NA
AOY63378.1\|2090537_2090984_-	hypothetical protein	NA	NA	NA	NA
AOY63377.1\|2091243_2091447_-	hypothetical protein	NA	NA	NA	NA
AOY63376.1\|2091507_2091732_+	hypothetical protein	NA	NA	NA	NA
AOY63375.1\|2091741_2092677_+	DUF159 family protein	NA	NA	NA	NA
AZB52532.1\|2092807_2093041_+	hypothetical protein	NA	NA	NA	NA
AOY63373.1\|2092992_2094171_-\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	4.5e-82	43.7
2097050:2097064	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2592935 : 2600887

Xanthomonas_phage(63.64%)

capsid,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOY63036.2\|2592935_2593625_+	hypothetical protein	A0A1D6ZIU8	Xanthomonas_phage	3.8e-25	44.1
AOY63035.2\|2593629_2593992_-	hypothetical protein	A0A1W6DXV7	Xanthomonas_phage	8.2e-11	37.7
AZB52557.1\|2594381_2594870_-	hypothetical protein	A0A077JCZ5	Xanthomonas_phage	8.0e-62	94.6
AOY63033.1\|2594997_2595222_+	hypothetical protein	A0A1W6DXK4	Xanthomonas_phage	8.0e-25	89.9
AOY63032.1\|2595384_2595564_+	hypothetical protein	NA	NA	NA	NA
AOY63031.1\|2595556_2596663_+	replication protein	S0F3I3	Stenotrophomonas_phage	1.0e-160	75.1
AOY63030.1\|2596659_2596956_+	single-stranded DNA-binding protein	B1NI78	Stenotrophomonas_phage	1.5e-26	65.6
AZB52558.1\|2596987_2597119_+\|coat	coat protein	NA	NA	NA	NA
AZB52559.1\|2597094_2597211_+	hypothetical protein	NA	NA	NA	NA
AOY63028.1\|2597239_2597368_+\|capsid	capsid protein	NA	NA	NA	NA
AOY63026.1\|2598256_2598496_+	hypothetical protein	Q9XJ91	Xanthomonas_phage	7.4e-37	97.5
AOY63025.1\|2598506_2598827_+\|coat	phage coat protein	Q4LAU3	Stenotrophomonas_phage	1.5e-21	46.2
AOY63024.1\|2598828_2600151_+	hypothetical protein	Q4LAU4	Stenotrophomonas_phage	2.4e-129	55.2
AOY63023.1\|2600170_2600482_-	chloride channel protein	A0A1W6DXV7	Xanthomonas_phage	2.1e-47	89.3
AOY63022.1\|2600548_2600887_-	hypothetical protein	Q38057	Xanthomonas_phage	7.1e-49	81.2

DBSCAN-SWA_6

2715515 : 2755284

uncultured_Caudovirales_phage(50.0%)

transposase,integrase,plate

attL 2722664:2722680|attR 2756637:2756653

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOY62945.1\|2715515_2716478_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
AZB52566.1\|2716946_2718215_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
AZB52567.1\|2718208_2718871_+	N-acetyltransferase	NA	NA	NA	NA
AZB52568.1\|2718873_2719290_+	NUDIX domain-containing protein	A0A1Q2U351	Vibrio_phage	1.2e-05	52.7
AZB52569.1\|2719286_2719892_+	hypothetical protein	NA	NA	NA	NA
AZB52570.1\|2719911_2721258_+	MFS transporter	NA	NA	NA	NA
AOY62944.1\|2721418_2721865_+	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA
AOY62943.1\|2721861_2722818_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
2722664:2722680	attL	NA	NA	NA	NA
AOY62942.1\|2722828_2724223_+	integrating conjugative element protein	NA	NA	NA	NA
AOY62941.1\|2724219_2724567_+	hypothetical protein	NA	NA	NA	NA
AOY62940.1\|2724582_2726100_+	conjugal transfer protein TraG	NA	NA	NA	NA
AOY62939.1\|2726111_2726477_-	DUF3742 domain-containing protein	NA	NA	NA	NA
AOY62938.1\|2726562_2727195_-	hypothetical protein	NA	NA	NA	NA
AOY62937.2\|2727207_2727834_-\|integrase	integrase	NA	NA	NA	NA
AOY62936.1\|2728149_2730075_+	hypothetical protein	NA	NA	NA	NA
AOY62935.1\|2730119_2730518_-	hypothetical protein	NA	NA	NA	NA
AOY62934.1\|2730519_2731551_-	hypothetical protein	NA	NA	NA	NA
AOY62933.1\|2731865_2732738_-	hypothetical protein	NA	NA	NA	NA
AZB52571.1\|2732712_2734905_-	Rhs element Vgr protein	A0A2H4JCD4	uncultured_Caudovirales_phage	2.1e-24	32.0
AOY62932.1\|2734907_2735804_-	hypothetical protein	NA	NA	NA	NA
AOY64891.1\|2735811_2736423_-	hypothetical protein	NA	NA	NA	NA
AOY64890.2\|2739088_2740036_-	DUF4123 domain-containing protein	NA	NA	NA	NA
AOY62931.1\|2740048_2742802_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.1e-38	27.0
AOY62930.1\|2742894_2743248_-	hypothetical protein	NA	NA	NA	NA
AOY62929.1\|2743279_2746018_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.2e-90	29.6
AOY62928.1\|2746103_2747195_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AOY62927.1\|2747158_2748994_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AOY62926.1\|2748996_2749485_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AOY62925.1\|2749632_2750130_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AOY62924.1\|2750271_2751768_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AOY62923.1\|2751771_2752272_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AOY64889.1\|2752317_2752806_-	hypothetical protein	NA	NA	NA	NA
AOY62922.1\|2753188_2753797_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AOY62921.1\|2753949_2755284_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
2756637:2756653	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3807151 : 3926117

117

Stenotrophomonas_phage(44.68%)

integrase,portal,transposase,tRNA,terminase,capsid,tail,plate,head,holin

attL 3848144:3848188|attR 3886171:3886215

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOY62149.1\|3807151_3807871_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
AOY62148.1\|3807884_3809909_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	6.7e-94	33.0
AOY62147.1\|3810182_3810707_-	hypothetical protein	NA	NA	NA	NA
AOY62146.1\|3810720_3813165_-	penicillin-binding protein 1B	NA	NA	NA	NA
AOY62145.1\|3813404_3815489_+	glycosyl transferase	NA	NA	NA	NA
AZB52605.1\|3815497_3815830_-	hypothetical protein	NA	NA	NA	NA
AOY62144.1\|3815845_3817288_-	hypothetical protein	NA	NA	NA	NA
AOY64837.1\|3817549_3819736_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	NA	NA	NA
AZB52606.1\|3820026_3820107_+	pyrroloquinoline quinone precursor peptide PqqA	NA	NA	NA	NA
AOY62143.1\|3820190_3821090_+	pyrroloquinoline quinone biosynthesis protein PqqB	NA	NA	NA	NA
AOY62142.1\|3821086_3821839_+	pyrroloquinoline-quinone synthase	NA	NA	NA	NA
AOY62141.1\|3821835_3822114_+	pyrroloquinoline quinone biosynthesis protein PqqD	NA	NA	NA	NA
AOY62140.1\|3822110_3823229_+	coenzyme PQQ synthesis protein E	NA	NA	NA	NA
AOY62139.1\|3823291_3823804_+	hypothetical protein	NA	NA	NA	NA
AOY62138.1\|3824240_3825755_+	PhoPQ-regulated protein	NA	NA	NA	NA
AOY62137.1\|3826055_3827090_+	glucokinase	NA	NA	NA	NA
AOY62136.1\|3827190_3829827_+	TonB-dependent receptor	NA	NA	NA	NA
AOY62135.1\|3830043_3834165_-	ATP-dependent RNA helicase HrpA	A0A1V0SDF7	Indivirus	2.0e-44	28.4
AOY62134.1\|3834267_3834816_+	DNA starvation/stationary phase protection protein	A0A2H4N7L5	Lake_Baikal_phage	1.5e-16	32.4
AZB52607.1\|3834920_3835106_-	hypothetical protein	NA	NA	NA	NA
AOY62133.1\|3835296_3837093_+	DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	1.5e-81	35.3
AOY62132.1\|3837231_3837729_+	hypothetical protein	NA	NA	NA	NA
AOY62131.1\|3837807_3838212_+	response regulator	NA	NA	NA	NA
AOY62130.1\|3839477_3839588_+	hypothetical protein	NA	NA	NA	NA
AOY62129.1\|3839679_3840390_-	RNA-binding protein	NA	NA	NA	NA
AOY62128.1\|3840598_3840805_+	hypothetical protein	NA	NA	NA	NA
AZB52608.1\|3840956_3841271_-	hypothetical protein	NA	NA	NA	NA
AOY62127.1\|3841315_3843484_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
AOY64836.1\|3843849_3844476_-	amino acid transporter	NA	NA	NA	NA
AOY62126.1\|3844577_3845480_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA
AOY62125.1\|3845752_3846112_-	response regulator	NA	NA	NA	NA
AOY62124.1\|3846108_3847116_-	PAS domain S-box protein	NA	NA	NA	NA
AOY62123.1\|3847390_3848065_+	7-cyano-7-deazaguanine synthase QueC	A0A088F6S9	Vibrio_phage	4.1e-24	33.8
3848144:3848188	attL	NA	NA	NA	NA
AOY62122.1\|3848333_3849533_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	2.3e-118	53.5
AOY62121.2\|3849532_3849793_-	hypothetical protein	V9IQX6	Stenotrophomonas_phage	2.2e-18	58.3
AOY62120.1\|3849750_3849957_-	hypothetical protein	NA	NA	NA	NA
AOY62119.1\|3849953_3850226_-	hypothetical protein	NA	NA	NA	NA
AOY62118.1\|3850222_3850468_-	hypothetical protein	NA	NA	NA	NA
AOY62117.1\|3850464_3850740_-	hypothetical protein	NA	NA	NA	NA
AOY62116.1\|3850901_3851312_-	hypothetical protein	NA	NA	NA	NA
AOY62115.1\|3851390_3851654_-	hypothetical protein	NA	NA	NA	NA
AOY62114.2\|3851650_3851875_-	hypothetical protein	NA	NA	NA	NA
AOY62113.1\|3851925_3852144_-	hypothetical protein	NA	NA	NA	NA
AOY62112.2\|3852437_3855101_-	bifunctional DNA primase/helicase	V9IQW5	Stenotrophomonas_phage	0.0e+00	69.9
AOY62111.1\|3855128_3855368_-	hypothetical protein	NA	NA	NA	NA
AZB52703.1\|3855364_3855490_-	hypothetical protein	NA	NA	NA	NA
AZB52609.1\|3855668_3855980_-	hypothetical protein	V9IQW3	Stenotrophomonas_phage	5.0e-25	57.0
AZB52610.1\|3855986_3856241_-	DNA-binding protein	A0A1B0VRL1	Pseudomonas_phage	2.2e-07	46.7
AOY62109.1\|3856307_3856736_+	XRE family transcriptional regulator	A4JWR8	Burkholderia_virus	1.4e-17	42.8
AZB52611.1\|3857042_3857507_-	hypothetical protein	NA	NA	NA	NA
AZB52612.1\|3857511_3857850_-	DUF4325 domain-containing protein	A0A2H4J4X6	uncultured_Caudovirales_phage	1.8e-07	32.0
AZB52613.1\|3857815_3858763_-	hypothetical protein	NA	NA	NA	NA
AOY62108.1\|3859049_3860036_-	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	4.0e-92	55.1
AOY62107.1\|3860032_3860434_-	oxidoreductase	V9IQX3	Stenotrophomonas_phage	2.5e-37	59.1
AOY62106.1\|3860446_3863317_-\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	5.2e-185	46.6
AZB52614.1\|3863346_3863460_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	4.2e-06	68.6
AOY62105.1\|3863468_3863771_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	1.4e-24	66.3
AOY62104.1\|3863816_3864326_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	5.8e-71	78.1
AOY62103.1\|3864356_3865523_-\|tail	phage tail protein	E5FFG9	Burkholderia_phage	2.6e-135	64.5
AOY62102.1\|3865534_3865894_-\|plate	baseplate assembly protein	V9IQW0	Stenotrophomonas_phage	1.6e-35	64.4
AOY62101.1\|3865890_3866454_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	7.4e-27	48.6
AOY62100.2\|3866532_3866808_-	hypothetical protein	NA	NA	NA	NA
AOY62099.1\|3866761_3867967_-\|tail	phage tail protein	A0A1S5NTG6	Burkholderia_phage	9.6e-32	46.2
AOY62098.2\|3867970_3868519_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	7.9e-50	52.6
AOY62097.1\|3868511_3869402_-\|plate	baseplate assembly protein	V9IQV9	Stenotrophomonas_phage	4.7e-84	53.7
AZB52615.1\|3869808_3870111_-	hypothetical protein	NA	NA	NA	NA
AZB52616.1\|3870293_3871118_-	hypothetical protein	NA	NA	NA	NA
AOY62096.1\|3871290_3871746_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	1.3e-37	59.0
AOY62095.1\|3871733_3872153_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	7.4e-40	64.4
AOY62094.1\|3872149_3872638_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	5.8e-28	52.4
AOY62093.2\|3872637_3873279_-	lysozyme	V9IQK6	Stenotrophomonas_phage	1.3e-48	60.9
AOY62092.1\|3873275_3873551_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	1.3e-21	59.8
AOY62091.1\|3873543_3873900_-	hypothetical protein	V9IQG9	Stenotrophomonas_phage	5.9e-22	56.1
AOY62090.1\|3873904_3874114_-\|tail	phage tail protein	K4PAW7	Burkholderia_phage	7.0e-15	59.4
AOY62089.1\|3874113_3874581_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	1.4e-31	50.3
AOY62088.1\|3874679_3875399_-\|terminase	terminase	Q9ZXM2	Pseudomonas_virus	1.0e-68	62.5
AOY62087.1\|3875402_3876419_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	8.4e-138	71.1
AOY62086.1\|3876465_3877308_-\|capsid	phage capsid protein	A0A2H4J928	uncultured_Caudovirales_phage	1.4e-66	52.7
AOY62085.1\|3877429_3879214_+\|terminase	terminase	V9IQL5	Stenotrophomonas_phage	6.6e-271	76.8
AOY62084.1\|3879213_3880236_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	3.1e-140	71.8
AZB52617.1\|3880261_3880507_+	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	4.1e-14	51.2
AOY62082.1\|3880424_3881120_+	site-specific DNA-methyltransferase	V9IQV5	Stenotrophomonas_phage	1.1e-107	77.8
AOY62081.2\|3881151_3881619_-	DUF4411 domain-containing protein	NA	NA	NA	NA
AOY62080.1\|3881618_3882845_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
AOY62079.1\|3884851_3885337_-	peptidase S24	A0A218MND2	uncultured_virus	1.1e-13	38.7
AZB52618.1\|3885680_3886016_+	hypothetical protein	NA	NA	NA	NA
AOY62078.1\|3886452_3887136_-	7-carboxy-7-deazaguanine synthase QueE	J9PV61	Bacillus_phage	3.0e-38	41.0
3886171:3886215	attR	NA	NA	NA	NA
AOY62077.1\|3887178_3887997_-	tol-pal system protein YbgF	NA	NA	NA	NA
AOY62076.1\|3888003_3888522_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA
AOY62075.1\|3888579_3889899_-	protein TolB	NA	NA	NA	NA
AOY62074.1\|3890084_3891125_-	cell envelope integrity protein TolA	NA	NA	NA	NA
AOY62073.1\|3891114_3891564_-	protein TolR	NA	NA	NA	NA
AOY62072.1\|3891721_3892501_-	protein TolQ	NA	NA	NA	NA
AOY62071.1\|3892512_3892971_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
AOY62070.1\|3893023_3894064_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	2.7e-06	28.2
AZB52619.1\|3894103_3894334_-	hypothetical protein	NA	NA	NA	NA
AOY62069.1\|3894336_3896241_-	potassium transporter Kup	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	3.7e-78	33.7
AOY62068.1\|3896437_3897022_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AOY62067.1\|3897140_3897665_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
AOY62066.1\|3897794_3898523_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AOY62065.1\|3898612_3899290_-	alpha/beta hydrolase	NA	NA	NA	NA
AOY62064.1\|3899387_3899915_-	N-acetyltransferase	NA	NA	NA	NA
AOY62063.1\|3900337_3902104_-\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
AOY62062.1\|3902262_3903006_+	DUF3011 domain-containing protein	NA	NA	NA	NA
AOY62061.1\|3903954_3904239_+	hypothetical protein	NA	NA	NA	NA
AOY64835.1\|3904396_3904936_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	9.6e-24	34.9
AOY62060.2\|3905208_3906311_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.7e-44	41.9
AOY62059.2\|3907324_3908469_-\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
AOY64832.2\|3909018_3909414_-	NYN domain-containing protein	NA	NA	NA	NA
AOY62058.1\|3909799_3913294_+	Avirulence protein AvrBs3	NA	NA	NA	NA
AOY62057.1\|3913601_3914132_-	hypothetical protein	NA	NA	NA	NA
AOY62056.2\|3914282_3915427_-\|transposase	IS3-like element ISXac3 family transposase	U5P429	Shigella_phage	5.6e-90	59.6
AOY64830.2\|3915976_3916372_-	NYN domain-containing protein	NA	NA	NA	NA
AOY62055.2\|3916757_3919946_+	Avirulence protein AvrBs3	NA	NA	NA	NA
AOY62054.2\|3920253_3920745_-	hypothetical protein	NA	NA	NA	NA
AZB52704.1\|3922308_3923856_-	outer protein C	NA	NA	NA	NA
AOY62051.1\|3925154_3926117_+\|transposase	IS1595-like element IS1595 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

4447792 : 4459562

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AOY61711.1\|4447792_4449139_+	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	7.5e-33	27.1
AOY61710.1\|4449185_4450589_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	6.5e-48	30.0
AOY61709.1\|4450871_4452038_-	nucleotide sugar dehydrogenase	M1HZB2	Paramecium_bursaria_Chlorella_virus	2.7e-116	58.1
AOY61708.1\|4452378_4453278_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.1e-27	35.7
AOY61707.1\|4453274_4453832_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.6e-44	48.9
AOY61706.1\|4453828_4454716_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	8.5e-94	57.5
AOY61705.1\|4454767_4455823_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.0e-83	47.4
AOY61704.1\|4456042_4456789_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA
AOY61703.1\|4456788_4457733_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
AOY61702.1\|4457896_4458625_+	hypothetical protein	NA	NA	NA	NA
AOY61701.1\|4458605_4459562_+	glycosyltransferase	A0A192Y8W7	Salmonella_phage	1.8e-25	27.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage