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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP017968 Paenibacillus polymyxa strain YC0573 chromosome, complete genome 4 crisprs WYL,csa3,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG 1 1 6 0

Results visualization

1. CP017968
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017968_1 2409761-2411284 TypeI I-C:NA
22 spacers
cas3,cas5,cas8c,cas7,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017968_2 2420400-2420846 TypeI NA
6 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017968_3 2427332-2427766 TypeI I-C:NA
6 spacers
cas2,cas1,cas4,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017968_4 2428879-2429111 TypeI I-C:NA
3 spacers
cas2,cas1,cas4,cas7

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP017968_1 1.12|2410543|37|CP017968|PILER-CR,CRISPRCasFinder,CRT 2410543-2410579 37 CP017968.3 4844475-4844511 0 1.0

1. spacer 1.12|2410543|37|CP017968|PILER-CR,CRISPRCasFinder,CRT matches to position: 4844475-4844511, mismatch: 0, identity: 1.0

gacaggctggcttgtgtatccgtctcacggtgagcag	CRISPR spacer
gacaggctggcttgtgtatccgtctcacggtgagcag	Protospacer
*************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP017968_3 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT 2427701-2427733 33 MT478991 Escherichia phage vB_EcoM_011D4, complete genome 74451-74483 8 0.758
CP017968_3 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT 2427701-2427733 33 MF327006 Shigella phage Sf20, complete genome 59517-59549 8 0.758
CP017968_3 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT 2427701-2427733 33 AY343333 Enterobacteria phage RB49, complete genome 123448-123480 8 0.758
CP017968_3 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT 2427701-2427733 33 MK573636 Escherichia phage vB_EcoM_PHB13, partial genome 111380-111412 8 0.758
CP017968_3 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT 2427701-2427733 33 MN655998 Escherichia phage E26, complete genome 123211-123243 9 0.727
CP017968_3 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT 2427701-2427733 33 MH560358 Escherichia virus KFS-EC, complete genome 67484-67516 9 0.727
CP017968_3 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT 2427701-2427733 33 MK327941 Escherichia phage vB_EcoM_G37-3, complete genome 125390-125422 9 0.727
CP017968_3 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT 2427701-2427733 33 MK327932 Escherichia phage vB_EcoM_G2248, complete genome 130206-130238 9 0.727
CP017968_3 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT 2427701-2427733 33 MK327935 Escherichia phage vB_EcoM_G2494, complete genome 126400-126432 9 0.727
CP017968_3 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT 2427701-2427733 33 NC_012740 Enterobacteria phage JSE, complete genome 127188-127220 9 0.727

1. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MT478991 (Escherichia phage vB_EcoM_011D4, complete genome) position: , mismatch: 8, identity: 0.758

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctctgcttttagcttgtctg	Protospacer
********.***************.    *..*

2. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MF327006 (Shigella phage Sf20, complete genome) position: , mismatch: 8, identity: 0.758

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctctgcttttagcttgtctg	Protospacer
********.***************.    *..*

3. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to AY343333 (Enterobacteria phage RB49, complete genome) position: , mismatch: 8, identity: 0.758

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctctgcttttagcttgtctg	Protospacer
********.***************.    *..*

4. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MK573636 (Escherichia phage vB_EcoM_PHB13, partial genome) position: , mismatch: 8, identity: 0.758

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctctgcttttagcttgtctg	Protospacer
********.***************.    *..*

5. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MN655998 (Escherichia phage E26, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctatcatctctgcttttagcttgtctg	Protospacer
********..**************.    *..*

6. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MH560358 (Escherichia virus KFS-EC, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

7. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MK327941 (Escherichia phage vB_EcoM_G37-3, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

8. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MK327932 (Escherichia phage vB_EcoM_G2248, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

9. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to MK327935 (Escherichia phage vB_EcoM_G2494, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

10. spacer 3.6|2427701|33|CP017968|CRISPRCasFinder,CRT matches to NC_012740 (Enterobacteria phage JSE, complete genome) position: , mismatch: 9, identity: 0.727

gtttctctgccatctctgcttttaagagtttcg	CRISPR spacer
gtttctctaccatctcggcttttagcttgtctg	Protospacer
********.******* *******.    *..*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 926538 : 938272 9 Mollivirus(25.0%) NA NA
DBSCAN-SWA_2 1098076 : 1141300 68 Brevibacillus_phage(27.91%) integrase,portal,terminase,plate attL 1092924:1092938|attR 1110215:1110229
DBSCAN-SWA_3 1384159 : 1400820 19 Bacillus_phage(50.0%) portal,plate,tail NA
DBSCAN-SWA_4 1936806 : 1946211 7 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_5 3187666 : 3195466 8 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_6 3409683 : 3471118 61 Paenibacillus_phage(31.25%) coat,protease,terminase,holin,tRNA,capsid,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage