CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP013156	Lactobacillus plantarum strain MF1298 plasmid pMF1298-6, complete sequence	0 crisprs	NA	0	0
CP013153	Lactobacillus plantarum strain MF1298 plasmid pMF1298-3, complete sequence	0 crisprs	NA	0	0
CP013166	Lactobacillus plantarum strain MF1298 plasmid pMF1298-10, complete sequence	0 crisprs	NA	0	0
CP013158	Lactobacillus plantarum strain MF1298 plasmid pMF1298-8, complete sequence	0 crisprs	NA	0	0
CP013160	Lactobacillus plantarum strain MF1298 plasmid pMF1298-9, complete sequence	0 crisprs	NA	0	0
CP013167	Lactobacillus plantarum strain MF1298 plasmid pMF1298-12, complete sequence	0 crisprs	NA	0	0
CP013149	Lactobacillus plantarum strain MF1298, complete genome	1 crisprs	csa3,cas9,cas1,cas2,csn2,DinG,cas3,DEDDh	21	5
CP013162	Lactobacillus plantarum strain MF1298 plasmid pMF1298-11, complete sequence	0 crisprs	NA	0	0
CP013154	Lactobacillus plantarum strain MF1298 plasmid pMF1298-7, complete sequence	0 crisprs	csa3	0	0
CP013170	Lactobacillus plantarum strain MF1298 plasmid pMF1298-14, complete sequence	0 crisprs	NA	0	0
CP013150	Lactobacillus plantarum strain MF1298 plasmid pMF1298-1, complete sequence	0 crisprs	csa3	0	0
CP013152	Lactobacillus plantarum strain MF1298 plasmid pMF1298-4, complete sequence	0 crisprs	csa3	0	0
CP013168	Lactobacillus plantarum strain MF1298 plasmid pMF1298-13, complete sequence	0 crisprs	NA	0	0
CP013155	Lactobacillus plantarum strain MF1298 plasmid pMF1298-5, complete sequence	0 crisprs	RT	0	1
CP013151	Lactobacillus plantarum strain MF1298 plasmid pMF1298-2, complete sequence	0 crisprs	csa3	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP013149_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP013149_1

116735-118846

TypeII

Consensus_repeat	Method
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	PILER-CR
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CRISPRCasFinder
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CRT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CRT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	PILER-CR
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAA	PILER-CR

58 spacers

csn2,cas2,cas1,cas9,csa3

The CRISPR arrays of CP013149_1

>merge|CP013149|1|116735-118846|PILER-CR,CRISPRCasFinder,CRT,CRT,PILER-CR,PILER-CR
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAAAATGGATTTCTGAGCATTACTGTCCGACGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGACTATACCAATGAGGTCGAAGCATGGTTAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACCACAAGGCCACCGAGGAAGCCGGCGAGCTAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTAGGTTTACTCATGGTAAATCCTCCTATGTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAAAATAAATTTAAGGTTGCGCAACACAATGGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAACTCATCATAAATGACGTCTTTTACCGAGGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTTAGGTTGAGCTGGATCGGGATCAGGATCGGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTCTGTTGTTTAATTTGTTTTAGATTGTTACGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACACTAAAGCCGGGGTATACAGCCCCGAAGAAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAAAATAGTTCGACGAAAAAGCCGAAAGAGAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGCGGCCACGACCGCCATGGGTGTCAGCGCCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTCGGATAACTTAGCGGCGGCGTATCCCTGCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACATAGTGACAGCATCTGTTTTCGGACCAATCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGAGGCTTGCACTAGTGAGTTCAATCGTTATGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTGTCCATACGAGCAGCGTTGGCACTTATTCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGTATTATTATCAACGTCCCGCATTGCGTTAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAGGATATATGAAATTAGTACATGTACTAGTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACACGTCTTTCAGCCCAGTAAACTGCTCAAGTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTTGAATACCATTCCTTGTTTATACTCCATCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAGTTCATAATCATATGATCTAAGTGACGGTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGGCCGGGTTAATCTTAATGTTTTATGTTCTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACCAATCAGAAAGAAGATGACGACTATAATGCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGACTTATACCAGCAGTACCGAAGACGGTTAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAACTGGGAGCGGTCAACACCCCAGGCTGTGGTCTTGAATAGTATTCATATCAAACAGGTTTAGAACACGCAAAGCCAGCCCTAGTCATGAGGTCATGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGTTGCAACTTTATCCTTGTCACTTTCAACAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACCAATACCATAGTAGTCAATTATTACACGTCGTCTTGAATAGTAGTCAATTATTACACGTCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGCCAAACAACATTGCAGAGAGCTAGTGCTTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGTGACGTGCTCCCATGTGACCCGAATTGACGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACCGACTCTAATGGATATTTTCAATCATAGCAGTCTTGAATAGTAGTCATATCAAATAGGTTTAGAACGATGGTGCTGTTGCACGTGATCCCGCGCTTGTCTTGAATAGTAGTCATATCAAGCAGGTTTAGAAT

>CP013149|1|1|116735-117958|PILER-CR
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATGGATTTCTGAGCATTACTGTCCGAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACTATACCAATGAGGTCGAAGCATGGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CACAAGGCCACCGAGGAAGCCGGCGAGCTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TAGGTTTACTCATGGTAAATCCTCCTATGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATAAATTTAAGGTTGCGCAACACAATG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AACTCATCATAAATGACGTCTTTTACCGAG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTAGGTTGAGCTGGATCGGGATCAGGATCG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TCTGTTGTTTAATTTGTTTTAGATTGTTAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACTAAAGCCGGGGTATACAGCCCCGAAGAA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATAGTTCGACGAAAAAGCCGAAAGAGA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GCGGCCACGACCGCCATGGGTGTCAGCGCC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TCGGATAACTTAGCGGCGGCGTATCCCTGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATAGTGACAGCATCTGTTTTCGGACCAATC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GAGGCTTGCACTAGTGAGTTCAATCGTTAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TGTCCATACGAGCAGCGTTGGCACTTATTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTATTATTATCAACGTCCCGCATTGCGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AGGATATATGAAATTAGTACATGTACTAGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACGTCTTTCAGCCCAGTAAACTGCTCAAGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTTGAATACCATTCCTTGTTTATACTCCATCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAGTTCATAATCATATGATCTAAGTGACGGTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGCCGGGTTAATCTTAATGTTTTATGTTCT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAATCAGAAAGAAGATGACGACTATAATGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACTTATACCAGCAGTACCGAAGACGGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AACTGGGAGCGGTCAACACCCCAGGCTGTG
GTCTTGAATAGTATTCATATCAAACAGGTTTAGAACACGCAAAGCCAGCCCTAGTCATGAGGTCATGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGTTGCAACTTTATCCTTGTCACTTTCAACAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACCAATACCATAGTAGTCAATTATTACACGTCGTCTTGAATAGTAGTCAATTATTACACGTCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGCCAAACAACATTGCAGAGAGCTAGTGCTTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAA	CGTGACGTGCTCCCATGTGACCCGAATTGAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAA	CCGACTCTAATGGATATTTTCAATCATAGCA
GTCTTGAATAGTAGTCATATCAAATAGGTTTAGAA	CGATGGTGCTGTTGCACGTGATCCCGCGCTT


>CP013149|1|1|116735-118846|CRISPRCasFinder
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATGGATTTCTGAGCATTACTGTCCGAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACTATACCAATGAGGTCGAAGCATGGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CACAAGGCCACCGAGGAAGCCGGCGAGCTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TAGGTTTACTCATGGTAAATCCTCCTATGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATAAATTTAAGGTTGCGCAACACAATG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AACTCATCATAAATGACGTCTTTTACCGAG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTAGGTTGAGCTGGATCGGGATCAGGATCG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TCTGTTGTTTAATTTGTTTTAGATTGTTAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACTAAAGCCGGGGTATACAGCCCCGAAGAA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATAGTTCGACGAAAAAGCCGAAAGAGA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GCGGCCACGACCGCCATGGGTGTCAGCGCC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TCGGATAACTTAGCGGCGGCGTATCCCTGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATAGTGACAGCATCTGTTTTCGGACCAATC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GAGGCTTGCACTAGTGAGTTCAATCGTTAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TGTCCATACGAGCAGCGTTGGCACTTATTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTATTATTATCAACGTCCCGCATTGCGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AGGATATATGAAATTAGTACATGTACTAGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACGTCTTTCAGCCCAGTAAACTGCTCAAGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTGAATACCATTCCTTGTTTATACTCCATC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AGTTCATAATCATATGATCTAAGTGACGGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGCCGGGTTAATCTTAATGTTTTATGTTCT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAATCAGAAAGAAGATGACGACTATAATGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACTTATACCAGCAGTACCGAAGACGGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AACTGGGAGCGGTCAACACCCCAGGCTGTG
GTCTTGAATAGTATTCATATCAAACAGGTTTAGAAC	ACGCAAAGCCAGCCCTAGTCATGAGGTCAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTTGCAACTTTATCCTTGTCACTTTCAACA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAATACCATAGTAGTCAATTATTACACGTCGTCTTGAATAGTAGTCAATTATTACACGTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GCCAAACAACATTGCAGAGAGCTAGTGCTT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTGACGTGCTCCCATGTGACCCGAATTGAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CGACTCTAATGGATATTTTCAATCATAGCA
GTCTTGAATAGTAGTCATATCAAATAGGTTTAGAAC	GATGGTGCTGTTGCACGTGATCCCGCGCTT
GTCTTGAATAGTAGTCATATCAAGCAGGTTTAGAAT

>CP013149|1|1|116735-118552|CRT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATGGATTTCTGAGCATTACTGTCCGAC
	AAAATGGATTTCTGAGCATTACTGTCCGAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACTATACCAATGAGGTCGAAGCATGGTTA
	GACTATACCAATGAGGTCGAAGCATGGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CACAAGGCCACCGAGGAAGCCGGCGAGCTA
	CACAAGGCCACCGAGGAAGCCGGCGAGCTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TAGGTTTACTCATGGTAAATCCTCCTATGT
	TAGGTTTACTCATGGTAAATCCTCCTATGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATAAATTTAAGGTTGCGCAACACAATG
	AAAATAAATTTAAGGTTGCGCAACACAATG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AACTCATCATAAATGACGTCTTTTACCGAG
	AACTCATCATAAATGACGTCTTTTACCGAG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTAGGTTGAGCTGGATCGGGATCAGGATCG
	TTAGGTTGAGCTGGATCGGGATCAGGATCG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TCTGTTGTTTAATTTGTTTTAGATTGTTAC
	TCTGTTGTTTAATTTGTTTTAGATTGTTAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACTAAAGCCGGGGTATACAGCCCCGAAGAA
	ACTAAAGCCGGGGTATACAGCCCCGAAGAA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATAGTTCGACGAAAAAGCCGAAAGAGA
	AAAATAGTTCGACGAAAAAGCCGAAAGAGA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GCGGCCACGACCGCCATGGGTGTCAGCGCC
	GCGGCCACGACCGCCATGGGTGTCAGCGCC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TCGGATAACTTAGCGGCGGCGTATCCCTGC
	TCGGATAACTTAGCGGCGGCGTATCCCTGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATAGTGACAGCATCTGTTTTCGGACCAATC
	ATAGTGACAGCATCTGTTTTCGGACCAATC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GAGGCTTGCACTAGTGAGTTCAATCGTTAT
	GAGGCTTGCACTAGTGAGTTCAATCGTTAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TGTCCATACGAGCAGCGTTGGCACTTATTC
	TGTCCATACGAGCAGCGTTGGCACTTATTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTATTATTATCAACGTCCCGCATTGCGTTA
	GTATTATTATCAACGTCCCGCATTGCGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AGGATATATGAAATTAGTACATGTACTAGT
	AGGATATATGAAATTAGTACATGTACTAGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACGTCTTTCAGCCCAGTAAACTGCTCAAGT
	ACGTCTTTCAGCCCAGTAAACTGCTCAAGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTGAATACCATTCCTTGTTTATACTCCATC
	TTGAATACCATTCCTTGTTTATACTCCATC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AGTTCATAATCATATGATCTAAGTGACGGT
	AGTTCATAATCATATGATCTAAGTGACGGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGCCGGGTTAATCTTAATGTTTTATGTTCT
	GGCCGGGTTAATCTTAATGTTTTATGTTCT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAATCAGAAAGAAGATGACGACTATAATGC
	CAATCAGAAAGAAGATGACGACTATAATGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACTTATACCAGCAGTACCGAAGACGGTTA
	GACTTATACCAGCAGTACCGAAGACGGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AACTGGGAGCGGTCAACACCCCAGGCTGTG
	AACTGGGAGCGGTCAACACCCCAGGCTGTG
GTCTTGAATAGTATTCATATCAAACAGGTTTAGAAC	ACGCAAAGCCAGCCCTAGTCATGAGGTCAT
	ACGCAAAGCCAGCCCTAGTCATGAGGTCAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTTGCAACTTTATCCTTGTCACTTTCAACA
	GTTGCAACTTTATCCTTGTCACTTTCAACA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAATACCATAGTAGTCAATTATTACACGTCGTCTTGAATAGTAGTCAATTATTACACGTC
	CAATACCATAGTAGTCAATTATTACACGTC
GTCTTGAATAGTAGTCAATTATTACACGTCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GCCAAACAACATTGCAGAGAGCTAGTGCTT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTGACGTGCTCCCATGTGACCCGAATTGAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CGACTCTAATGGATATTTTCAATCATAGCA
GTCTTGAATAGTAGTCATATCAAATAGGTTTAGAAC	GATGGTGCTGTTGCACGTGATCCCGCGCTT


>CP013149|1|2|116735-118846|CRT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATGGATTTCTGAGCATTACTGTCCGAC
	AAAATGGATTTCTGAGCATTACTGTCCGAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACTATACCAATGAGGTCGAAGCATGGTTA
	GACTATACCAATGAGGTCGAAGCATGGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CACAAGGCCACCGAGGAAGCCGGCGAGCTA
	CACAAGGCCACCGAGGAAGCCGGCGAGCTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TAGGTTTACTCATGGTAAATCCTCCTATGT
	TAGGTTTACTCATGGTAAATCCTCCTATGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATAAATTTAAGGTTGCGCAACACAATG
	AAAATAAATTTAAGGTTGCGCAACACAATG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AACTCATCATAAATGACGTCTTTTACCGAG
	AACTCATCATAAATGACGTCTTTTACCGAG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTAGGTTGAGCTGGATCGGGATCAGGATCG
	TTAGGTTGAGCTGGATCGGGATCAGGATCG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TCTGTTGTTTAATTTGTTTTAGATTGTTAC
	TCTGTTGTTTAATTTGTTTTAGATTGTTAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACTAAAGCCGGGGTATACAGCCCCGAAGAA
	ACTAAAGCCGGGGTATACAGCCCCGAAGAA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATAGTTCGACGAAAAAGCCGAAAGAGA
	AAAATAGTTCGACGAAAAAGCCGAAAGAGA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GCGGCCACGACCGCCATGGGTGTCAGCGCC
	GCGGCCACGACCGCCATGGGTGTCAGCGCC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TCGGATAACTTAGCGGCGGCGTATCCCTGC
	TCGGATAACTTAGCGGCGGCGTATCCCTGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATAGTGACAGCATCTGTTTTCGGACCAATC
	ATAGTGACAGCATCTGTTTTCGGACCAATC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GAGGCTTGCACTAGTGAGTTCAATCGTTAT
	GAGGCTTGCACTAGTGAGTTCAATCGTTAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TGTCCATACGAGCAGCGTTGGCACTTATTC
	TGTCCATACGAGCAGCGTTGGCACTTATTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTATTATTATCAACGTCCCGCATTGCGTTA
	GTATTATTATCAACGTCCCGCATTGCGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AGGATATATGAAATTAGTACATGTACTAGT
	AGGATATATGAAATTAGTACATGTACTAGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACGTCTTTCAGCCCAGTAAACTGCTCAAGT
	ACGTCTTTCAGCCCAGTAAACTGCTCAAGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTGAATACCATTCCTTGTTTATACTCCATC
	TTGAATACCATTCCTTGTTTATACTCCATC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AGTTCATAATCATATGATCTAAGTGACGGT
	AGTTCATAATCATATGATCTAAGTGACGGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGCCGGGTTAATCTTAATGTTTTATGTTCT
	GGCCGGGTTAATCTTAATGTTTTATGTTCT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAATCAGAAAGAAGATGACGACTATAATGC
	CAATCAGAAAGAAGATGACGACTATAATGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACTTATACCAGCAGTACCGAAGACGGTTA
	GACTTATACCAGCAGTACCGAAGACGGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AACTGGGAGCGGTCAACACCCCAGGCTGTG
	AACTGGGAGCGGTCAACACCCCAGGCTGTG
GTCTTGAATAGTATTCATATCAAACAGGTTTAGAAC	ACGCAAAGCCAGCCCTAGTCATGAGGTCAT
	ACGCAAAGCCAGCCCTAGTCATGAGGTCAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTTGCAACTTTATCCTTGTCACTTTCAACA
	GTTGCAACTTTATCCTTGTCACTTTCAACA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAATACCATAGTAGTCAATTATTACACGTCGTCTTGAATAGTAGTCAATTATTACACGTC
	CAATACCATAGTAGTCAATTATTACACGTC
GTCTTGAATAGTAGTCAATTATTACACGTCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GCCAAACAACATTGCAGAGAGCTAGTGCTT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTGACGTGCTCCCATGTGACCCGAATTGAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CGACTCTAATGGATATTTTCAATCATAGCA
GTCTTGAATAGTAGTCATATCAAATAGGTTTAGAAC	GATGGTGCTGTTGCACGTGATCCCGCGCTT
GTCTTGAATAGTAGTCATATCAAGCAGGTTTAGAAT

>CP013149|1|2|118055-118354|PILER-CR
	AAAATGGATTTCTGAGCATTACTGTCCGAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACTATACCAATGAGGTCGAAGCATGGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CACAAGGCCACCGAGGAAGCCGGCGAGCTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TAGGTTTACTCATGGTAAATCCTCCTATGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATAAATTTAAGGTTGCGCAACACAATG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AACTCATCATAAATGACGTCTTTTACCGAG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTAGGTTGAGCTGGATCGGGATCAGGATCG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TCTGTTGTTTAATTTGTTTTAGATTGTTAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACTAAAGCCGGGGTATACAGCCCCGAAGAA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATAGTTCGACGAAAAAGCCGAAAGAGA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GCGGCCACGACCGCCATGGGTGTCAGCGCC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TCGGATAACTTAGCGGCGGCGTATCCCTGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATAGTGACAGCATCTGTTTTCGGACCAATC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GAGGCTTGCACTAGTGAGTTCAATCGTTAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TGTCCATACGAGCAGCGTTGGCACTTATTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTATTATTATCAACGTCCCGCATTGCGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AGGATATATGAAATTAGTACATGTACTAGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACGTCTTTCAGCCCAGTAAACTGCTCAAGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTTGAATACCATTCCTTGTTTATACTCCATCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAGTTCATAATCATATGATCTAAGTGACGGTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGCCGGGTTAATCTTAATGTTTTATGTTCT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAATCAGAAAGAAGATGACGACTATAATGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACTTATACCAGCAGTACCGAAGACGGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AACTGGGAGCGGTCAACACCCCAGGCTGTG
GTCTTGAATAGTATTCATATCAAACAGGTTTAGAACACGCAAAGCCAGCCCTAGTCATGAGGTCATGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGTTGCAACTTTATCCTTGTCACTTTCAACAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACCAATACCATAGTAGTCAATTATTACACGTCGTCTTGAATAGTAGTCAATTATTACACGTCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGCCAAACAACATTGCAGAGAGCTAGTGCTTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAA	CGTGACGTGCTCCCATGTGACCCGAATTGAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAA	CCGACTCTAATGGATATTTTCAATCATAGCA
GTCTTGAATAGTAGTCATATCAAATAGGTTTAGAA	CGATGGTGCTGTTGCACGTGATCCCGCGCTT


>CP013149|1|3|118613-118845|PILER-CR
	AAAATGGATTTCTGAGCATTACTGTCCGAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACTATACCAATGAGGTCGAAGCATGGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CACAAGGCCACCGAGGAAGCCGGCGAGCTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TAGGTTTACTCATGGTAAATCCTCCTATGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATAAATTTAAGGTTGCGCAACACAATG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AACTCATCATAAATGACGTCTTTTACCGAG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TTAGGTTGAGCTGGATCGGGATCAGGATCG
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TCTGTTGTTTAATTTGTTTTAGATTGTTAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACTAAAGCCGGGGTATACAGCCCCGAAGAA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AAAATAGTTCGACGAAAAAGCCGAAAGAGA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GCGGCCACGACCGCCATGGGTGTCAGCGCC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TCGGATAACTTAGCGGCGGCGTATCCCTGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ATAGTGACAGCATCTGTTTTCGGACCAATC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GAGGCTTGCACTAGTGAGTTCAATCGTTAT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	TGTCCATACGAGCAGCGTTGGCACTTATTC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GTATTATTATCAACGTCCCGCATTGCGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AGGATATATGAAATTAGTACATGTACTAGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	ACGTCTTTCAGCCCAGTAAACTGCTCAAGT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACTTGAATACCATTCCTTGTTTATACTCCATCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACAGTTCATAATCATATGATCTAAGTGACGGTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GGCCGGGTTAATCTTAATGTTTTATGTTCT
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	CAATCAGAAAGAAGATGACGACTATAATGC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	GACTTATACCAGCAGTACCGAAGACGGTTA
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC	AACTGGGAGCGGTCAACACCCCAGGCTGTG
GTCTTGAATAGTATTCATATCAAACAGGTTTAGAACACGCAAAGCCAGCCCTAGTCATGAGGTCATGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGTTGCAACTTTATCCTTGTCACTTTCAACAGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACCAATACCATAGTAGTCAATTATTACACGTCGTCTTGAATAGTAGTCAATTATTACACGTCGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAACGCCAAACAACATTGCAGAGAGCTAGTGCTTGTCTTGAATAGTAGTCATATCAAACAGGTTTAGAA	CGTGACGTGCTCCCATGTGACCCGAATTGAC
GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAA	CCGACTCTAATGGATATTTTCAATCATAGCA
GTCTTGAATAGTAGTCATATCAAATAGGTTTAGAA	CGATGGTGCTGTTGCACGTGATCCCGCGCTT
GTCTTGAATAGTAGTCATATCAAGCAGGTTTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP013149.1\|APC99905.1\|115730_116036_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
CP013149.1\|APC99903.1\|110577_114654_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
CP013149.1\|APC99904.1\|114847_115753_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
CP013149.1\|APC99908.1\|121998_122757_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|350158
CP013149.1\|APC99910.1\|123059_123662_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
CP013149.1\|APC99906.1\|116032_116710_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
CP013149.1\|APC99914.2\|127196_127562_+\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP013149.1\|APC99911.1\|123775_124249_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP013149.1\|APC99902.1\|109506_110289_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP013149.1\|APC99901.1\|108774_109482_+\|hypothetical-protein	unknown	unknown	unknown
CP013149.1\|APC99909.1\|122799_122994_-\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
CP013149.1\|APC99907.1\|118975_121714_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
CP013149.1\|APC99913.1\|125939_127172_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340949
CP013149.1\|APC99912.1\|124394_124817_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|107228
CP013149.1\|APC99915.1\|127626_128820_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340897
CP013149.1\|APC99899.1\|105527_106892_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182694
CP013149.1\|APC99897.1\|103116_104709_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|214906
CP013149.1\|APC99916.1\|129063_129912_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
CP013149.1\|APC99900.1\|106849_108544_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|376573
CP013149.1\|APC99898.1\|104824_105295_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240033

Protein	Function_ID	Function_description	E-value
CP013149.1\|APC99905.1\|115730_116036_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.86227e-25
CP013149.1\|APC99903.1\|110577_114654_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	4.24614e-129
CP013149.1\|APC99904.1\|114847_115753_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.76066e-89
CP013149.1\|APC99908.1\|121998_122757_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|350158	cd09007, NP-I_spr0068, uncharacterized subfamily of the nucleoside phosphorylase-I family. This subfamily is composed of uncharacterized members including Streptococcus pneumoniae hypothetical protein spr0068. The nucleoside phosphorylase-I (NP-I) family members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases such as purine nucleoside phosphorylase (PNP, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases such as AMP nucleosidase (AMN, EC 3.2.2.4) and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). Members of the NP-I family display different physiologically relevant quaternary structures: hexameric (trimer-of-dimers arrangement of Shewanella oneidensis MR-1 UP); homotrimeric (human PNP and Escherichia coli PNPII or XapA); hexameric (with some evidence for co-existence of a trimeric form) such as E. coli PNPI (DeoD); or homodimeric such as human and Trypanosoma brucei UP. The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	1.48358e-89
CP013149.1\|APC99910.1\|123059_123662_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	2.80954e-31
CP013149.1\|APC99906.1\|116032_116710_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.3635e-80
CP013149.1\|APC99914.2\|127196_127562_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	7.3086e-14
CP013149.1\|APC99911.1\|123775_124249_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	0.000122978
CP013149.1\|APC99902.1\|109506_110289_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.17929e-25
CP013149.1\|APC99915.1\|127626_128820_+\|MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.6578e-118
CP013149.1\|APC99909.1\|122799_122994_-\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	2.12668e-17
CP013149.1\|APC99907.1\|118975_121714_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
CP013149.1\|APC99913.1\|125939_127172_+\|MFS-transporter	gnl\|CDD\|340949	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli multidrug resistance protein MdtG, Streptococcus pneumoniae multidrug resistance efflux pump PmrA, and similar multidrug resistance (MDR) transporters from bacteria. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtG confers resistance to fosfomycin and deoxycholate. PmrA serves as an efflux pump for various substrates and is associated with fluoroquinolone resistance. MdtG-like MDR transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.1962e-140
CP013149.1\|APC99912.1\|124394_124817_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|107228	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic membrane.	2.47416e-43
CP013149.1\|APC99899.1\|105527_106892_+\|amino-acid-permease	gnl\|CDD\|182694	PRK10746, PRK10746, putative transport protein YifK; Provisional.	0
CP013149.1\|APC99897.1\|103116_104709_+\|DNA-binding-protein	gnl\|CDD\|214906	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p. HIRAN is found as a standalone protein in several bacteria and prophages, or fused to other catalytic domains, such as a nuclease of the restriction endonuclease fold and TDP1-like DNA phosphoesterases, in the eukaryotes. It has been predicted that this protein functions as a DNA-binding domain that probably recognises features associated with damaged DNA or stalled replication forks.	2.11625e-17
CP013149.1\|APC99916.1\|129063_129912_+\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	2.6134e-121
CP013149.1\|APC99900.1\|106849_108544_-\|IS1182-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	9.62335e-15
CP013149.1\|APC99898.1\|104824_105295_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240033	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	8.22877e-58

>CP013149.1|APC99906.1|116032_116710_+|type-II-A-CRISPR-associated-protein-Csn2
MNITYYPFPPFKIDAGKVNVLDLGNSNMYAEVCQGFRDRIDSVRISNDDLELQTMSSQCNWYGDLMLSVDLNRLFLKKVQTQIIKLMADDRQVAVLDENRKVVSQVMEASFLLDLPLDVDESPSLEQILKFTGIHFPTELMNDPRAILEALVQTHVELGLKQKLVLTNISHYLDQKQWASFEQLVHDLGATVIVIEYSEINRMEKFKNSCYYYVDEDLVDWRDMN
>CP013149.1|APC99905.1|115730_116036_+|CRISPR-associated-endonuclease-Cas2
MRLIVMFDVPMDTSEERRAYRHFHKALVREGFLMMQYSTYVRVCVNKKAAEFVEKRIAPLAPKGGKVQTMTVTEKQYQAMHYIQGTPSNDVLNSAERTIVI
>CP013149.1|APC99904.1|114847_115753_+|type-II-CRISPR-associated-endonuclease-Cas1
MGWRNVIITQHAKVSYSMNRILVQTSSDKYAVPISDIQLLLVGTTQAVITSAALCALAEAHVKVIFTDHQGEPISETNDYYPTRRTADLVRQQVTWPEARIATLWTKNVGSKILNQIQVIDFVGGDTQTLVDELDKLELNDVTNREAVVANKYFSLLFGDQFYRRDFSPINAALNYGYAVLLSMVNREIVLNGYLTCIGIHHENNENEFNLGSDLMEPFRPIVDQWVSQQRFKDFTPDIKIGLVSLLDLEIGFNGHQTIVSHAITEYVAACLHYLSGETEELKIEVKLPDEVSSDAINSHV
>CP013149.1|APC99903.1|110577_114654_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKEPYGVGLDIGTNSVGWTVVDASGHVRKIKGQTGIGVRLFKEGAAAADRRGFRTTRRRLKRVKWRLRLLREFFDQPISKVDINFFARRKYSDISPRDPNYNGLEKTLFNDRSDQDFYHDYPTIYHLREALMTQHRKFDVREIYLAIHHIVKYRGNFLRNDAATAYRSGTLDLQQHFETLNHLFSQADLELNLNLTTDVALLDSIKQTLVRTDISRSDRQKLIMPLLAVLTGATTAEKKRQKAVVTEFAKALVGNKTKIDVLTLTDIDATEAKDWAFSLEENQDKLPGIEDRFSEVGQQIIDEVIRLYASVNLAQLIPEGKRFSQSMVEKYKRHGEDLKLLKAYIRSQSDAKRGRAIRATYDQYIDGVKSKQVTQEAFQKALGKFVDADVDLNSWAAQIKQAIDSEQFMPKLRTKQNGAIPYQVQQNELDQIINNQKEYYPWLGEENPVIKRRGKFPYKLDELVGFRVPYYVGPLITKEMQAATANAGFAWMVRKADGPITPWNFDDKVDRVASATAFIQRMQTTDTYLIGEEVLPARSLIYQRFMVLNELNNIRVDDGQLTPRQKQRLYNQVFKKHKRVTAKNIQDNLVAAGEFPTAPRITGLADPKVFNSSLSTYHDLKQVLPEAMSDVRKQADIEKIILWSTIFEDSTIFKQKLTEISWLTAAQLKQLGQLRYRGWGQLSRKLLTGLKDDNNRSIMDGLWETNANFMQLRSQPAIENQIKSANQANLTTADLQDTINELYTSPQNKKAIREVMVVLADIKDAMHGQTPNWIFVEAARGGGVAGRRTQSRSKQIVAAYQGTAQVIVSDQVQRELKEKIKNKANFNTRLVLYFLQNGRDLYTGDAINIDRLSEYDIDHILPQSLVKDDSLDNRVLTNARINREKNDTFASEKFGKKMGAKWKEMHRMGLMTKRKLDHLLMRPDEISKYATGFINRQLVETRQVIKLVEELINAEYPSTAIVSVKANLTHQFRQTFDFPKIREVNDYHHAFDAALTAFIGTYLLKRYPKLERFFVYGKFAKQPVNLTRFNVIRKLAKTDTPITDIDTGEVLWDKLTDIKYFETLYDYKRLLVTREVSENYGAMFDQTLLKASDNGKRLIRKKQSFDTAIYGGYTGKTLAYMAIVKVSTKKDVQYQVVGVPTTMVTQIEQLEQQGMTNKQAVTKVIEPLIAANNKKMLTYEVLLPKVRFEQVVRDRIKGQTHRFALGTDTYYHNIQELYLPLTLQRAFLGKQNESEVQLNQNLLTVFDATLAQVNRYFPLYEMNKFKKILNSARDQIELLEAKNQFVKNKLVLGKQGILTNMFIGLHANASFGDLKSLGVKTSFGQLQVPGGIKLTGDAEIIYQSPTGLFERKIALKDL
>CP013149.1|APC99902.1|109506_110289_+|alpha/beta-hydrolase
MHFITSDHVQLDYTDEGQGQPIVILTGFGGAKDIWRAQIPVLIQAGYRVINLDGRCQGLSEHTAKGLRMSRRAVDAHELIEKLQLEQPILLGNSMGAATWFAYVSLYGDTGIKALIDVDQTPQMINTPHWQYGFKQVQWQDIPDYFRMPLGHSTFKHIDDATYARVKAVEAQAPFDAKLMFPLLVNHAVQDWRDVIRQLTVPFLIIAGAKSPFFNPDFAAVTAQMALRGQSVVIPEAGHIVMAEQSAAFNKALLEFLATC
>CP013149.1|APC99901.1|108774_109482_+|hypothetical-protein
MVKQGHYAKVSKQKRLRQLKQRRQAQEKRAIMPEMVSEFLQVRYHLTQAAKQRPAMRQMMQRFMAQWLAAGQAELSDNGQTTWSVVALTKQTLQTFNRQLPWQGYALVDQEMARWTAFLNKEVPAVPLSERITLTEALSPATWQACLSEQLAVNALLALTGDSRQLSQITTEQVRQLQTSIQTATGIDWEKVAQLLDSTVIAQNTLSEAEPDDKTRQWLEKLQKLTPQDFNNHVE
>CP013149.1|APC99900.1|106849_108544_-|IS1182-family-transposase
MQDYYNMNQTTLSIALDYQPEEHHPARYINQLVESLKLKYDYQFGRPREYNLGAMLKLVLLAYCYGIFSSRKIEQFARENKPAGWLIADQIPSYRTICRFRISDELATLTTDSLSQLTQYLRQNGMIDDVSFIDGTKILADANKYSFVWKKNTIRFDKMNREKLVDLLGELHEAKIVGEIPAGSELTPELLDIMISKVEDHLVVLNETVEATKQVSPNPAKQQRRTVKSQKRKLNKRRDKMREHQAQQAIYGQRNSYSKTDHDATFMRVKEDPMQNGQLKPAYNVQIATSNQFITGYRLFQNPTDTRTLQPFIEHLKANNVLGHTIVADAGYGSESNYRYLEDEFGQHTVLIPYGTMLKENSRKWQSDDRKVMNWDYHEKDDYFINPQNVRFNFNAYRQRTDKYGFTRDFKEYIAEKYDENHQLIAAALTPKGYLKRISVNENWEYFKSKQRELLSAPETGQIYAQRKIDVEPVFGKMKASLHFNRFSVRGFDKVTKEAGIVILALNIMKLVTVGTNFKNQRRKQMGRETKIRFLVPFAYTEASYVTASLDYNVSSLLPAYLRK
>CP013149.1|APC99899.1|105527_106892_+|amino-acid-permease
MQRKLSTGQMQMIALGGTIGVGLFMGSSSTIKWTGPSVLIAYIVSGAFLYLIMRALGEMLYVDPNTGSFAKFASEYIHPVFGYLTAWSNIFQFVVVGMSEMIALGGYCRYWWPNLPDWIPGLIAIVFLCAANLISVKMFGTLETWFSLIKVVTIILMIIAGLGLIIFGIGNGGHPIGISNLWTHGGFFTGGVKGFVFALAIVLASYQGIELIGVTAGEAENPQSTIVKAIRSTVARILIFYVGAIFVIVSIYPWDKLSQIGSPFVQTFAKIGITAAASIINFVVITASLSGTNSGIYSASRMTYTLAESHQLPRKMTLLNRHGVPFYSVIAIATGILIGVVLNVVLPMFFKDASEIFVMVYSSSVLPGMVPWFVILVSQIAFRKQNAAKMANHPFKMPLSPYSNYLTLAFLALTLVFMFINPETRYSILVGVVFLVIMTLIYFRKYAGNKEETL
>CP013149.1|APC99898.1|104824_105295_-|NUDIX-domain-containing-protein
MANYIKEIRALVGHKPIILNTAAGILVNDQQQVLLNLRTDTHNWSLPGGYLEYGETYATACVREYKEDSGIDVEVVDRIGIFDKGETAYPNGDVAQTISALFLVKPIGGHVLTQATDETLKLDYFDFDNLPPLLNQQNADMIHAAQEYLQTHSATK
>CP013149.1|APC99897.1|103116_104709_+|DNA-binding-protein
MERIEAGMSVMTLKKQTYRVIAVINQGQELLVRAHEPETADIEIIPVTTVVQVTEQNSTDDAAVALDTVTVVGERYVDDIVATLTTLRVGMAVLLQRESGNQYDDNAISVWTLQHAKLGYIARYQNQPYATLMDQGQRLYGIVTVLDQQKQHLELMLWRTTAVPSPIEALQIRQRLAKPRTNLGAVPTHSLQTPLGTIVMMCNGHPIKYQQVPLSPWLTPADELHVTKRYLLTPDWSQVPPDSLITCQVTAKADVVQRWQNEHISAAVLTNASSFYVVGISAQTKTGLNDNLVDDVAQPAVIYRVGQVSAHMQAGFMVSWAPFGDPRVQPALKLALHFSSQPLVLYHPVTPSRTNATFTQQELAALLVSALPNYQGGQRLEPSVTAITVEKLRQTLGDQTYHALANYQRHVQLVAGSTEGVNETLLQALIHAVTYHELTTMHYYQPTVGMVDQVIYPIQLFSTTTKDEDDAQLVGCLALYNYETFEIQQVPLTAIARIAIIADPEHPQTTPETESPDWLRIFLHGWNDDF
>CP013149.1|APC99907.1|118975_121714_-|cation-transporting-P-type-ATPase
MIKDDNQSLTSNEEQNDTQNPPDADNLWQLDESALAAKYATDPENGLSTAEAAERLQHNGRNELETKRTSRFVQFIKQFNNSIIYILAAAAVLTFFMHHYSDSIVIGLVIIANAIIGYVQERQAGNALERIREMLISKNFVIRDGKKLEIDARELVVGDLVNLEAGDAVPADMRLISADNFNVQESVLTGETNPVEKQEEPMTETTPALADRKNMVYASTAVTSGSAVGIVTATAEDTEIGHIQQSVSDVKQTTTPLMRNLNSLGFGLSIAIVVAAVLLFLLGMVMDTYSLPTLLIAVITMVVGSMPEGLPASTSVVLAMGTRQMTKKNVIVKSLPAVETLGAVDIVNTDKTGTLTKNEMTVTKVVTPEHTFDVTGVGYDDNGGVNFDGHLKLNGNKVDWHQDNAMEWLVKIAGQTTDAELHFENNRWELTGEPTDGALTTLYRKMTGHDPEVEEVDSLPFDSAFRFSARLADLDGQRLLMVKGSPATVLRLTDQANQTAYWDDAMDDLTADGLRVVALAYQEVDDDVTTIDAQAIGGLHLAGLVGIIDPPREEAATAIAELRQAGVQVKMITGDHPDTAMAIANKLNLAANVKAITGPEIDAMDDQQLQAHIDDYNVFARATPNNKLRIVRAQQANNHVVSMTGDGVNDAPALKQADIGVAMGIKGTEVAKESADMVLADDDFADIVAAVREGRHVFDNIRKTIRFLLPTSFAEGLVVIISILMGHELPLYPTQLLWINMVSALTIQFAFIFEPPEAGIMARGPRNVKSGLLSKLDYFEIGYVSFLISGLGIFAYNYLTALGLPNVVGSTMSLNIIIFGKIFYLFNLRNDHPVISKYFFQNKMAFYIIGILILLQLGIIYLPFMQSVFHTTSINFWYGWGIPIICGIVVLIVTEVGKFIRFRWMGKDGVID
>CP013149.1|APC99908.1|121998_122757_+|purine-nucleoside-phosphorylase
MTDKLTLLQYDPNPTAMVGPDVDGRFTVPAKLLYIFSGDDYFQQFVTRYHGHRLGQFNTITKVSWVYQIGYRGQKLAVAQAPLGSPAATMYLEMLIDFGARTVIAVGSCGALTALPEEQLLIPTVALRDEGTSFHYLAAADWVPLDPRVIQVLGTTLTKACLPWQMVKTWTTDAFFRETVSKVKAARQQGCQVVEMECSALAACSAFRQVSFGQLLYTADTLAQLEHYDPRHWGAGGVLVAIELATESLAAY
>CP013149.1|APC99909.1|122799_122994_-|PspC-domain-containing-protein
MKIDIHRSATDRVIAGVIGGIAEHFNWNTNVTRLLFVVLAITPMFPGIIAYLILWLLMKDPIKD
>CP013149.1|APC99910.1|123059_123662_-|NADPH-dependent-oxidoreductase
MFKIAIILGSTRSQANGRALFNHLKLIIDQLPTHSTIHYQFLDLANYQLPLFDEPEPPMANPHRELPANQQQWLTDMASADGYIILTPEYNHAMPAGLKNAFDFLAFEGARKPAKIISYSDNMRGGQFGAAALVPVLQRLGMVVLPKPTPIGNVPQTLQSNGHFIDNAPLSKRYDRALHQALTEITYYTTVLTTTPFPTD
>CP013149.1|APC99911.1|123775_124249_+|MarR-family-transcriptional-regulator
MTTPLVSQLMTELNQFLTQDSVDDQEKRWAMQQTTDPQLQAALKQLSTTDIKIIAYLGRRGASRAKSLPAPTELSQATISRGLTKLSRLKLATKYRDLTNNKEILVRLTTLGEAVADLHTQLDAAIAAKAQAIADDYSDAELRRFVSLMRRIREIKI
>CP013149.1|APC99912.1|124394_124817_+|Hsp20/alpha-crystallin-family-protein
MANTLMNRNDFGMLDPFERMARSFWAPLENMDQVLKTDINETDDQYQVKVDVPGIDKQDVKLDYRDNVLSIKVQKDSFVDHEDQDQNIVMNERHTGTLQRQYMLPNVAADKITASQADGVLTITLPKTQPSANDGQIEIQ
>CP013149.1|APC99913.1|125939_127172_+|MFS-transporter
MDDAERERGPWHRNLIVLWFCTFVAGMAFSEIMPFLSLFVSQLGDFTKAQITFYSGLAFAADYAISAISAPLWGIIADKKGRKIMLLRASLGMAVAMGLMGFVTNVWQLVALRALQGVFAGFISNAQALVASQTPRKYSGRALSTLITGAVSGQLFGPVIGGLLAQLFSIRNTFFITAGLLMVAFLLSLFFVQEHFKPVAHHREPGDSRNPLAAFQNPRLIIVMLCSTAIVQFGNASIAPIISLYVRELMHYRGPITVVAGIIAALPGISNIFSAPRLGRYGDQHGSGKVLLFGYIFAVIMYFPQGIVTSVVALGILRFAIGISDGALYPEIQTVLTKNTPVHLTSTIFSYNQSFQAIGNMFGALLGGLVAGWFNYNAVFIMTALLLLINLGLILWLVPDIWKNGKRAVS
>CP013149.1|APC99914.2|127196_127562_+|ArsR-family-transcriptional-regulator
MASCLFCYLSLNMMLIQCIVSFMNIEISKQDQADQQRVAIFKALADANRLRIIRVLYQAQREMTCSEVGAQLNISKSTVSYHFKTLRLVGLTNTRRKAQTKYLSLQLATFDRFLPGFLATL
>CP013149.1|APC99915.1|127626_128820_+|MFS-transporter
MTTTHQHSRYLTLGMMLAATNMRLPITMMPGLISSLKRTLGLPSSMAGLLTTIPLLTFAIMSPLIAHWGRRFGNELTIYVMLIFLAVGSYLRVIPTIAALFIGTLLVGIGADGGNVLIPAIIKDNFPTKIPVATSQYTLSMLLVGSLGTGLSGVLAAHWSLPLTMAVLSVIGLINLVVWLPNLKYNHRAPTVAMTASDGQSTATHGSVWRRPLAWVVTAFFGLQALVYYSLLTWLPTVFVAHGFSLIVAGNLVTVMQLSGLPMSYLVPATSGHRRGVWAMIMVVGVGFIAGIGGILLSGTNFWVAALSCVLLGLGSGAAFSLAVVFFTQKTTNGFETADLSGMAQSAGYLLAAVGPVLFGWLGGQLGWGPVLWLAIILSALLALSGSIIFQHATIYE
>CP013149.1|APC99916.1|129063_129912_+|aldo/keto-reductase
MTVLTTMYQLANGVNIPKVAFGTWQIPGGEATYQAVRAALAAGYRHIDTALAYQNEASVGQAIRDSGIPREQIFVTTKLPAETKSYQGALNDFDRSLKNLGLDYVDLYLVHAPWPWGQVGRVYDEANLDVWQAMEAIYQSGRAKAIGVSNFAVRDLKNILNQATIPPMVNQIQYYLGFTEPKITKFSEEHAMLVEAYSPLATGGVLDNPQVQAYADKYGVSVAQLALRFVLQNGVLPLPKAVNPAHIEANTQLDFAISVADMQALNDLPDAAGSYMHNLTQG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP013149_1	1.18\|117893\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117893-117922	30	NC_004305	Lactobacillus phage phig1e, complete genome	33581-33610	0	1.0
CP013149_1	1.18\|117893\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117893-117922	30	X98106	Lactobacillus bacteriophage phig1e complete genomic DNA	33581-33610	0	1.0
CP013149_1	1.13\|117563\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117563-117592	30	NZ_CP025993	Lactobacillus plantarum subsp. plantarum strain LB1-2 plasmid pLB1-2B, complete sequence	35085-35114	1	0.967
CP013149_1	1.19\|117959\|30\|CP013149\|CRISPRCasFinder,CRT,CRT	117959-117988	30	JX486087	Lactobacillus phage ATCC 8014-B1, complete genome	30242-30271	3	0.9
CP013149_1	1.11\|117431\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117431-117460	30	JX486087	Lactobacillus phage ATCC 8014-B1, complete genome	8954-8983	4	0.867
CP013149_1	1.19\|117959\|30\|CP013149\|CRISPRCasFinder,CRT,CRT	117959-117988	30	JN051154	Pediococcus phage clP1, complete genome	15025-15054	4	0.867
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	457051-457080	5	0.833
CP013149_1	1.18\|117893\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117893-117922	30	AY682195	Lactobacillus plantarum bacteriophage LP65, complete genome	7535-7564	5	0.833
CP013149_1	1.18\|117893\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117893-117922	30	NC_006565	Lactobacillus phage LP65, complete genome	7535-7564	5	0.833
CP013149_1	1.18\|117893\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117893-117922	30	NZ_CP014913	Lactobacillus paracollinoides strain TMW 1.1979 plasmid pL11979-1, complete sequence	43852-43881	5	0.833
CP013149_1	1.18\|117893\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117893-117922	30	NZ_CP014925	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-1, complete sequence	1277-1306	5	0.833
CP013149_1	1.18\|117893\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117893-117922	30	KU052488	Lactobacillus phage SA-C12, complete genome	48107-48136	5	0.833
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	MN585972	Arthrobacter phage Edmundo, complete genome	37248-37277	6	0.8
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	226094-226123	6	0.8
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	MK894437	Microbacterium phage MonChoix, complete genome	5804-5833	6	0.8
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1460937-1460966	6	0.8
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1258097-1258126	6	0.8
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1461084-1461113	6	0.8
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1211727-1211756	6	0.8
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1250630-1250659	6	0.8
CP013149_1	1.7\|117167\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117167-117196	30	NZ_AP018205	Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome	71233-71262	6	0.8
CP013149_1	1.7\|117167\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117167-117196	30	NZ_AP014640	Leptolyngbya boryana IAM M-101 plasmid pLBX	434240-434269	6	0.8
CP013149_1	1.14\|117629\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117629-117658	30	MN119376	Streptomyces phage Geostin, complete genome	10843-10872	6	0.8
CP013149_1	1.14\|117629\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117629-117658	30	MH155868	Streptomyces phage FlowerPower, complete genome	10843-10872	6	0.8
CP013149_1	1.14\|117629\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117629-117658	30	MN284894	Streptomyces phage Fabian, complete genome	10843-10872	6	0.8
CP013149_1	1.22\|118157\|30\|CP013149\|CRISPRCasFinder,CRT,CRT,PILER-CR	118157-118186	30	NZ_CP044283	Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence	239270-239299	6	0.8
CP013149_1	1.22\|118157\|30\|CP013149\|CRISPRCasFinder,CRT,CRT,PILER-CR	118157-118186	30	NZ_CP017303	Rhodococcus sp. YL-1 plasmid pYLL1 sequence	104800-104829	6	0.8
CP013149_1	1.22\|118157\|30\|CP013149\|CRISPRCasFinder,CRT,CRT,PILER-CR	118157-118186	30	NZ_CP042915	Rhodococcus qingshengii strain RL1 plasmid unnamed2	184929-184958	6	0.8
CP013149_1	1.33\|118648\|31\|CP013149\|PILER-CR	118648-118678	31	NC_047953	Pseudomonas phage vB_PaeP_130_113, complete genome	6092-6122	6	0.806
CP013149_1	1.33\|118648\|31\|CP013149\|PILER-CR	118648-118678	31	KR054031	Pseudomonas phage DL62, complete genome	5937-5967	6	0.806
CP013149_1	1.33\|118648\|31\|CP013149\|PILER-CR	118648-118678	31	AM910651	Pseudomonas phage LUZ19, complete genome	5989-6019	6	0.806
CP013149_1	1.33\|118648\|31\|CP013149\|PILER-CR	118648-118678	31	MN901924	Pseudomonas phage vB_PaeP_PE3, complete genome	5942-5972	6	0.806
CP013149_1	1.1\|116771\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116771-116800	30	KX961630	Bacillus phage QCM8, complete genome	50060-50089	7	0.767
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1676275-1676304	7	0.767
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	AX955019	Sequence 1 from Patent WO03093461	24256-24285	7	0.767
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	566335-566364	7	0.767
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NC_008270	Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence	265258-265287	7	0.767
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NZ_KU140623	Sinorhizobium sp. M14 plasmid pSinB, complete sequence	185121-185150	7	0.767
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	MF614628	Sinorhizobium phage phi3LM21, complete genome	5122-5151	7	0.767
CP013149_1	1.4\|116969\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116969-116998	30	KX507046	Vibrio phage S4-7, complete genome	56857-56886	7	0.767
CP013149_1	1.7\|117167\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117167-117196	30	MH669013	Gordonia phage Skysand, complete genome	27210-27239	7	0.767
CP013149_1	1.7\|117167\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117167-117196	30	MK977699	Gordonia Phage Lollipop1437, complete genome	27754-27783	7	0.767
CP013149_1	1.17\|117827\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117827-117856	30	LR215721	Staphylococcus phage Stab22 genome assembly, chromosome: I	2364-2393	7	0.767
CP013149_1	1.17\|117827\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117827-117856	30	LR215721	Staphylococcus phage Stab22 genome assembly, chromosome: I	144638-144667	7	0.767
CP013149_1	1.20\|118025\|30\|CP013149\|CRISPRCasFinder,CRT,CRT	118025-118054	30	NC_014389	Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence	275012-275041	7	0.767
CP013149_1	1.24\|118289\|30\|CP013149\|CRISPRCasFinder,CRT,CRT,PILER-CR	118289-118318	30	NC_006362	Nocardia farcinica IFM 10152 plasmid pNF1, complete sequence	173494-173523	7	0.767
CP013149_1	1.24\|118289\|30\|CP013149\|CRISPRCasFinder,CRT,CRT,PILER-CR	118289-118318	30	NZ_LN868941	Nocardia farcinica strain NCTC11134 plasmid 4, complete sequence	83638-83667	7	0.767
CP013149_1	1.24\|118289\|30\|CP013149\|CRISPRCasFinder,CRT,CRT,PILER-CR	118289-118318	30	NZ_CP031419	Nocardia farcinica strain W6977 plasmid unnamed1, complete sequence	25519-25548	7	0.767
CP013149_1	1.31\|118781\|30\|CP013149\|CRISPRCasFinder,CRT	118781-118810	30	NZ_CP015089	Pelagibaca abyssi strain JLT2014 plasmid pPABY5, complete sequence	37190-37219	7	0.767
CP013149_1	1.32\|118487\|30\|CP013149\|CRT	118487-118516	30	NZ_CP024791	Nostoc flagelliforme CCNUN1 plasmid pNFSY06, complete sequence	197362-197391	7	0.767
CP013149_1	1.32\|118487\|30\|CP013149\|CRT	118487-118516	30	NZ_CP015007	Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence	122733-122762	7	0.767
CP013149_1	1.1\|116771\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116771-116800	30	MN013089	Bacillus phage vB_BspM_MarvelLand, complete genome	137765-137794	8	0.733
CP013149_1	1.1\|116771\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116771-116800	30	MH688040	Salmonella phage Mooltan, complete genome	70183-70212	8	0.733
CP013149_1	1.1\|116771\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116771-116800	30	NC_025446	Escherichia phage ECML-4, complete genome	125647-125676	8	0.733
CP013149_1	1.1\|116771\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116771-116800	30	MN342150	Escherichia phage vB_EcoM_3HA11, complete genome	38164-38193	8	0.733
CP013149_1	1.1\|116771\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116771-116800	30	NC_023856	Salmonella phage vB_SalM_SJ2, complete genome	146281-146310	8	0.733
CP013149_1	1.1\|116771\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116771-116800	30	MH427377	Escherichia phage vB_EcoM Sa157lw, complete genome	38644-38673	8	0.733
CP013149_1	1.1\|116771\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116771-116800	30	FQ312032	Salmonella phage Vi01 complete sequence	90217-90246	8	0.733
CP013149_1	1.1\|116771\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116771-116800	30	NC_015296	Salmonella phage Vi01, complete genome	90217-90246	8	0.733
CP013149_1	1.1\|116771\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116771-116800	30	MN066127	Salmonella phage Matapan, complete genome	70171-70200	8	0.733
CP013149_1	1.2\|116837\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116837-116866	30	NC_004349	Shewanella oneidensis MR-1 megaplasmid, complete sequence	34495-34524	8	0.733
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	44384-44413	8	0.733
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	JN106173	Uncultured bacterium plasmid pAKD31, complete sequence	48838-48867	8	0.733
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	JN106174	Uncultured bacterium plasmid pAKD33, complete sequence	52672-52701	8	0.733
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	JN106165	Uncultured bacterium plasmid pAKD14, complete sequence	43322-43351	8	0.733
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	JN106166	Uncultured bacterium plasmid pAKD15, complete sequence	61248-61277	8	0.733
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	JN106168	Uncultured bacterium plasmid pAKD17, complete sequence	46452-46481	8	0.733
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NZ_CP038640	Cupriavidus oxalaticus strain X32 plasmid unnamed5, complete sequence	32603-32632	8	0.733
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	613932-613961	8	0.733
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NC_019320	Variovorax sp. DB1 plasmid pDB1, complete sequence	31677-31706	8	0.733
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	KY676784	Streptomyces phage ToastyFinz, complete genome	4751-4780	8	0.733
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	KY092482	Streptomyces phage Mojorita, complete genome	4976-5005	8	0.733
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	KY092480	Streptomyces phage Picard, complete genome	4976-5005	8	0.733
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NZ_LR134463	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 21, complete sequence	98986-99015	8	0.733
CP013149_1	1.7\|117167\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117167-117196	30	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	708167-708196	8	0.733
CP013149_1	1.8\|117233\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117233-117262	30	MH617654	Caudovirales sp. isolate ctbf53, complete genome	22891-22920	8	0.733
CP013149_1	1.11\|117431\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117431-117460	30	KM879463	Arthrobacter phage vB_ArtM-ArV1, complete genome	15860-15889	8	0.733
CP013149_1	1.18\|117893\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117893-117922	30	MT104467	Pseudomonas phage MR4, complete genome	6493-6522	8	0.733
CP013149_1	1.18\|117893\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117893-117922	30	NC_047802	Pectobacterium phage PP99, complete genome	9391-9420	8	0.733
CP013149_1	1.18\|117893\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117893-117922	30	KJ749827	Escherichia phage ECBP5, complete genome	7250-7279	8	0.733
CP013149_1	1.22\|118157\|30\|CP013149\|CRISPRCasFinder,CRT,CRT,PILER-CR	118157-118186	30	MH616711	Inoviridae sp. isolate ctbe45, complete genome	1436-1465	8	0.733
CP013149_1	1.24\|118289\|30\|CP013149\|CRISPRCasFinder,CRT,CRT,PILER-CR	118289-118318	30	NC_015729	Roseobacter litoralis Och 149 plasmid pRLO149_63, complete sequence	59709-59738	8	0.733
CP013149_1	1.24\|118289\|30\|CP013149\|CRISPRCasFinder,CRT,CRT,PILER-CR	118289-118318	30	NZ_CP027408	Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed2, complete sequence	61691-61720	8	0.733
CP013149_1	1.24\|118289\|30\|CP013149\|CRISPRCasFinder,CRT,CRT,PILER-CR	118289-118318	30	NZ_CP026745	Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence	90557-90586	8	0.733
CP013149_1	1.24\|118289\|30\|CP013149\|CRISPRCasFinder,CRT,CRT,PILER-CR	118289-118318	30	NC_008387	Roseobacter denitrificans OCh 114 plasmid pTB2, complete sequence	30719-30748	8	0.733
CP013149_1	1.35\|118780\|31\|CP013149\|PILER-CR	118780-118810	31	NZ_CP015089	Pelagibaca abyssi strain JLT2014 plasmid pPABY5, complete sequence	37189-37219	8	0.742
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NZ_CP010801	Ralstonia mannitolilytica strain SN82F48 plasmid pRMAN01, complete sequence	183710-183739	9	0.7
CP013149_1	1.3\|116903\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	116903-116932	30	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	909914-909943	9	0.7
CP013149_1	1.6\|117101\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117101-117130	30	MN693509	Marine virus AFVG_25M367, complete genome	54175-54204	9	0.7
CP013149_1	1.6\|117101\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117101-117130	30	NZ_CP012101	Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence	20801-20830	9	0.7
CP013149_1	1.18\|117893\|30\|CP013149\|PILER-CR,CRISPRCasFinder,CRT,CRT	117893-117922	30	NZ_CP032091	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence	270177-270206	9	0.7
CP013149_1	1.23\|118223\|30\|CP013149\|CRISPRCasFinder,CRT,CRT,PILER-CR	118223-118252	30	MN582058	Caudovirales sp. ctOwN3, complete genome	16148-16177	9	0.7

1. spacer 1.18|117893|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NC_004305 (Lactobacillus phage phig1e, complete genome) position: , mismatch: 0, identity: 1.0

acgtctttcagcccagtaaactgctcaagt	CRISPR spacer
acgtctttcagcccagtaaactgctcaagt	Protospacer
******************************

2. spacer 1.18|117893|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to X98106 (Lactobacillus bacteriophage phig1e complete genomic DNA) position: , mismatch: 0, identity: 1.0

acgtctttcagcccagtaaactgctcaagt	CRISPR spacer
acgtctttcagcccagtaaactgctcaagt	Protospacer
******************************

3. spacer 1.13|117563|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP025993 (Lactobacillus plantarum subsp. plantarum strain LB1-2 plasmid pLB1-2B, complete sequence) position: , mismatch: 1, identity: 0.967

atagtgacagcatctgttttcggaccaatc	CRISPR spacer
atagtgacagcatctgtttttggaccaatc	Protospacer
********************.*********

4. spacer 1.19|117959|30|CP013149|CRISPRCasFinder,CRT,CRT matches to JX486087 (Lactobacillus phage ATCC 8014-B1, complete genome) position: , mismatch: 3, identity: 0.9

ttgaataccattccttgtttatactccatc	CRISPR spacer
gtgaataccataccttgtttataatccatc	Protospacer
 ********** *********** ******

5. spacer 1.11|117431|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to JX486087 (Lactobacillus phage ATCC 8014-B1, complete genome) position: , mismatch: 4, identity: 0.867

gcggccacgaccgccatgggtgtcagcgcc	CRISPR spacer
gcggccacgaccgctatgggtgtcagttca	Protospacer
**************.***********. *

6. spacer 1.19|117959|30|CP013149|CRISPRCasFinder,CRT,CRT matches to JN051154 (Pediococcus phage clP1, complete genome) position: , mismatch: 4, identity: 0.867

ttgaataccattccttgtttatactccatc	CRISPR spacer
gtaaataccataccttgtttataatccatc	Protospacer
 *.******** *********** ******

7. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 5, identity: 0.833

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gacacggccaccgaagaagccggcgagcag	Protospacer
 *** *********.************* .

8. spacer 1.18|117893|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to AY682195 (Lactobacillus plantarum bacteriophage LP65, complete genome) position: , mismatch: 5, identity: 0.833

acgtctttcagcccagtaaactgctcaagt	CRISPR spacer
ttgtctttcagcccagtaaactgttcaacg	Protospacer
 .*********************.****

9. spacer 1.18|117893|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NC_006565 (Lactobacillus phage LP65, complete genome) position: , mismatch: 5, identity: 0.833

acgtctttcagcccagtaaactgctcaagt	CRISPR spacer
ttgtctttcagcccagtaaactgttcaacg	Protospacer
 .*********************.****

10. spacer 1.18|117893|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP014913 (Lactobacillus paracollinoides strain TMW 1.1979 plasmid pL11979-1, complete sequence) position: , mismatch: 5, identity: 0.833

acgtctttcagcccagtaaactgctcaagt	CRISPR spacer
acgtctttcaggccggtaaactgctccaaa	Protospacer
*********** **.*********** *.

11. spacer 1.18|117893|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP014925 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-1, complete sequence) position: , mismatch: 5, identity: 0.833

acgtctttcagcccagtaaactgctcaagt	CRISPR spacer
acgtctttcaggccggtaaactgctccaaa	Protospacer
*********** **.*********** *.

12. spacer 1.18|117893|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to KU052488 (Lactobacillus phage SA-C12, complete genome) position: , mismatch: 5, identity: 0.833

acgtctttcagcccagtaaactgctcaagt	CRISPR spacer
aagtctttcagtccagtaaactgttcaaca	Protospacer
* *********.***********.****

13. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MN585972 (Arthrobacter phage Edmundo, complete genome) position: , mismatch: 6, identity: 0.8

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
cgcaaggccaccgaggaagccgtcgataag	Protospacer
*.******************** ***   .

14. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
caccaggccacccaggaagccggcgcccat	Protospacer
*** ******** ************  *

15. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MK894437 (Microbacterium phage MonChoix, complete genome) position: , mismatch: 6, identity: 0.8

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gtcaaggccacggaggaagccgtcgaggtc	Protospacer
  ********* ********** **** *

16. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cacaaggccaccgaggaagccggcgagcta-	CRISPR spacer
ggcaaggccaccgaggcacccggcg-cctat	Protospacer
 .************** * ******  ***

17. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 6, identity: 0.8

cacaaggccaccgaggaagccggcgagcta-	CRISPR spacer
ggcaaggccaccgaggcacccggcg-cctat	Protospacer
 .************** * ******  ***

18. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cacaaggccaccgaggaagccggcgagcta-	CRISPR spacer
ggcaaggccaccgaggcacccggcg-cctat	Protospacer
 .************** * ******  ***

19. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cacaaggccaccgaggaagccggcgagcta-	CRISPR spacer
ggcaaggccaccgaggcacccggcg-cctat	Protospacer
 .************** * ******  ***

20. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

cacaaggccaccgaggaagccggcgagcta-	CRISPR spacer
ggcaaggccaccgaggcacccggcg-cctat	Protospacer
 .************** * ******  ***

21. spacer 1.7|117167|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_AP018205 (Leptolyngbya boryana NIES-2135 plasmid plasmid2 DNA, complete genome) position: , mismatch: 6, identity: 0.8

ttaggttgagctggatcgggatcaggatcg	CRISPR spacer
tccgtttgggctgaatcgggatcaggatgg	Protospacer
*. * ***.****.************** *

22. spacer 1.7|117167|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_AP014640 (Leptolyngbya boryana IAM M-101 plasmid pLBX) position: , mismatch: 6, identity: 0.8

ttaggttgagctggatcgggatcaggatcg	CRISPR spacer
tccgtttgggctgaatcgggatcaggatgg	Protospacer
*. * ***.****.************** *

23. spacer 1.14|117629|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MN119376 (Streptomyces phage Geostin, complete genome) position: , mismatch: 6, identity: 0.8

gaggcttgcactagtgagttcaatcgttat-	CRISPR spacer
gaggcttggactcgtgagttcaa-caagatg	Protospacer
******** *** ********** *.  **

24. spacer 1.14|117629|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MH155868 (Streptomyces phage FlowerPower, complete genome) position: , mismatch: 6, identity: 0.8

gaggcttgcactagtgagttcaatcgttat-	CRISPR spacer
gaggcttggactcgtgagttcaa-caagatg	Protospacer
******** *** ********** *.  **

25. spacer 1.14|117629|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MN284894 (Streptomyces phage Fabian, complete genome) position: , mismatch: 6, identity: 0.8

gaggcttgcactagtgagttcaatcgttat-	CRISPR spacer
gaggcttggactcgtgagttcaa-caagatg	Protospacer
******** *** ********** *.  **

26. spacer 1.22|118157|30|CP013149|CRISPRCasFinder,CRT,CRT,PILER-CR matches to NZ_CP044283 (Rhodococcus erythropolis strain X5 plasmid pRhX5, complete sequence) position: , mismatch: 6, identity: 0.8

caatcagaaagaagatgacgactataatgc	CRISPR spacer
cgatcagaaagaagaagacgaccatcaacc	Protospacer
*.************* ******.** *  *

27. spacer 1.22|118157|30|CP013149|CRISPRCasFinder,CRT,CRT,PILER-CR matches to NZ_CP017303 (Rhodococcus sp. YL-1 plasmid pYLL1 sequence) position: , mismatch: 6, identity: 0.8

caatcagaaagaagatgacgactataatgc	CRISPR spacer
cgatcagaaagaagaagacgaccatcaacc	Protospacer
*.************* ******.** *  *

28. spacer 1.22|118157|30|CP013149|CRISPRCasFinder,CRT,CRT,PILER-CR matches to NZ_CP042915 (Rhodococcus qingshengii strain RL1 plasmid unnamed2) position: , mismatch: 6, identity: 0.8

caatcagaaagaagatgacgactataatgc	CRISPR spacer
cgatcagaaagaagaagacgaccatcaacc	Protospacer
*.************* ******.** *  *

29. spacer 1.33|118648|31|CP013149|PILER-CR matches to NC_047953 (Pseudomonas phage vB_PaeP_130_113, complete genome) position: , mismatch: 6, identity: 0.806

cgtgacgtgctcccatgtgaccc--gaattgac	CRISPR spacer
cgtgccgtgctcccaggtgaccccggagatg--	Protospacer
**** ********** *******  **. **

30. spacer 1.33|118648|31|CP013149|PILER-CR matches to KR054031 (Pseudomonas phage DL62, complete genome) position: , mismatch: 6, identity: 0.806

cgtgacgtgctcccatgtgaccc--gaattgac	CRISPR spacer
cgtgccgtgctcccaggtgaccccggagatg--	Protospacer
**** ********** *******  **. **

31. spacer 1.33|118648|31|CP013149|PILER-CR matches to AM910651 (Pseudomonas phage LUZ19, complete genome) position: , mismatch: 6, identity: 0.806

cgtgacgtgctcccatgtgaccc--gaattgac	CRISPR spacer
cgtgccgtgctcccaggtgaccccggagatg--	Protospacer
**** ********** *******  **. **

32. spacer 1.33|118648|31|CP013149|PILER-CR matches to MN901924 (Pseudomonas phage vB_PaeP_PE3, complete genome) position: , mismatch: 6, identity: 0.806

cgtgacgtgctcccatgtgaccc--gaattgac	CRISPR spacer
cgtgccgtgctcccaggtgaccccggagatg--	Protospacer
**** ********** *******  **. **

33. spacer 1.1|116771|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to KX961630 (Bacillus phage QCM8, complete genome) position: , mismatch: 7, identity: 0.767

aaaatggatttctgagcattactgtccgac	CRISPR spacer
taaatggatttctgagcattactacggaaa	Protospacer
 **********************..  .*

34. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
tacacggccaccgaggcagccggcgcgtcg	Protospacer
.*** *********** ******** *...

35. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to AX955019 (Sequence 1 from Patent WO03093461) position: , mismatch: 7, identity: 0.767

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gacgccaccaccgaggaagccgccgagctc	Protospacer
 **.  .*************** ******

36. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 7, identity: 0.767

cacaag---gccaccgaggaagccggcgagcta	CRISPR spacer
---atgcttgccaccgaggaaaccggcaagctc	Protospacer
   * *   ************.*****.****

37. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NC_008270 (Rhodococcus jostii RHA1 plasmid pRHL2, complete sequence) position: , mismatch: 7, identity: 0.767

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gaacaggccaccgagatagccggcgagtga	Protospacer
 *  ***********. **********. *

38. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_KU140623 (Sinorhizobium sp. M14 plasmid pSinB, complete sequence) position: , mismatch: 7, identity: 0.767

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
atcaacgccaccgaggaagccgccgcggtt	Protospacer
  *** **************** ** * *

39. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MF614628 (Sinorhizobium phage phi3LM21, complete genome) position: , mismatch: 7, identity: 0.767

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gacaaggccgccgaggaaaccggcctgccg	Protospacer
 ********.********.*****  **..

40. spacer 1.4|116969|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to KX507046 (Vibrio phage S4-7, complete genome) position: , mismatch: 7, identity: 0.767

taggtttactcatggtaaatcctcctatgt	CRISPR spacer
caggtttccacatggtaaatcctctagtgg	Protospacer
.****** * **************. .**

41. spacer 1.7|117167|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MH669013 (Gordonia phage Skysand, complete genome) position: , mismatch: 7, identity: 0.767

ttaggttgagctggatcgggatcaggatcg	CRISPR spacer
cgagcaggcgcaggatcgggatcaggatcg	Protospacer
. **   * ** ******************

42. spacer 1.7|117167|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MK977699 (Gordonia Phage Lollipop1437, complete genome) position: , mismatch: 7, identity: 0.767

ttaggttgagctggatcgggatcaggatcg	CRISPR spacer
cgagcaggcgcaggatcgggatcaggatcg	Protospacer
. **   * ** ******************

43. spacer 1.17|117827|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to LR215721 (Staphylococcus phage Stab22 genome assembly, chromosome: I) position: , mismatch: 7, identity: 0.767

aggatatatgaaattagtacatgtactagt	CRISPR spacer
attttatatgaaattagtatatgaactcat	Protospacer
*   ***************.*** *** .*

44. spacer 1.17|117827|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to LR215721 (Staphylococcus phage Stab22 genome assembly, chromosome: I) position: , mismatch: 7, identity: 0.767

aggatatatgaaattagtacatgtactagt	CRISPR spacer
attttatatgaaattagtatatgaactcat	Protospacer
*   ***************.*** *** .*

45. spacer 1.20|118025|30|CP013149|CRISPRCasFinder,CRT,CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 7, identity: 0.767

agttcataatcatatgatctaagtgacggt	CRISPR spacer
ggtatcgaatcatatgatgtaagagacggt	Protospacer
.** .  *********** **** ******

46. spacer 1.24|118289|30|CP013149|CRISPRCasFinder,CRT,CRT,PILER-CR matches to NC_006362 (Nocardia farcinica IFM 10152 plasmid pNF1, complete sequence) position: , mismatch: 7, identity: 0.767

aactgggagcggtcaacaccccaggctgtg	CRISPR spacer
gcacgggagcggtcgacaccccgggctgtt	Protospacer
.  .**********.*******.******

47. spacer 1.24|118289|30|CP013149|CRISPRCasFinder,CRT,CRT,PILER-CR matches to NZ_LN868941 (Nocardia farcinica strain NCTC11134 plasmid 4, complete sequence) position: , mismatch: 7, identity: 0.767

aactgggagcggtcaacaccccaggctgtg	CRISPR spacer
gcacgggagcggtcgacaccccgggctgtt	Protospacer
.  .**********.*******.******

48. spacer 1.24|118289|30|CP013149|CRISPRCasFinder,CRT,CRT,PILER-CR matches to NZ_CP031419 (Nocardia farcinica strain W6977 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aactgggagcggtcaacaccccaggctgtg	CRISPR spacer
gcacgggagcggtcgacaccccgggctgtt	Protospacer
.  .**********.*******.******

49. spacer 1.31|118781|30|CP013149|CRISPRCasFinder,CRT matches to NZ_CP015089 (Pelagibaca abyssi strain JLT2014 plasmid pPABY5, complete sequence) position: , mismatch: 7, identity: 0.767

gatggtgctgttgcacgtgatcccgcgctt	CRISPR spacer
ctccgagctgttccaggtgatcccgcgctt	Protospacer
  . * ****** ** **************

50. spacer 1.32|118487|30|CP013149|CRT matches to NZ_CP024791 (Nostoc flagelliforme CCNUN1 plasmid pNFSY06, complete sequence) position: , mismatch: 7, identity: 0.767

caataccatagtagtcaattattacacgtc	CRISPR spacer
ccataccatcgtattcaattattactttcc	Protospacer
* ******* *** *********** . .*

51. spacer 1.32|118487|30|CP013149|CRT matches to NZ_CP015007 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence) position: , mismatch: 7, identity: 0.767

caataccatagtagtcaattattacacgtc	CRISPR spacer
aaataccatagtcgtcaattatcatatttt	Protospacer
 *********** *********.*.*. *.

52. spacer 1.1|116771|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MN013089 (Bacillus phage vB_BspM_MarvelLand, complete genome) position: , mismatch: 8, identity: 0.733

aaaatggatttctgagcattactgtccgac	CRISPR spacer
taaatggatttccgagcattactacggaaa	Protospacer
 ***********.**********..  .*

53. spacer 1.1|116771|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MH688040 (Salmonella phage Mooltan, complete genome) position: , mismatch: 8, identity: 0.733

aaaatggatttctgagcattactgtccgac	CRISPR spacer
aaaattgatttctgagtattactacatcag	Protospacer
***** **********.******.. . *

54. spacer 1.1|116771|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NC_025446 (Escherichia phage ECML-4, complete genome) position: , mismatch: 8, identity: 0.733

aaaatggatttctgagcattactgtccgac	CRISPR spacer
aaaattgatttctgagtattactacatcag	Protospacer
***** **********.******.. . *

55. spacer 1.1|116771|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MN342150 (Escherichia phage vB_EcoM_3HA11, complete genome) position: , mismatch: 8, identity: 0.733

aaaatggatttctgagcattactgtccgac	CRISPR spacer
aaaattgatttctgagtattactacatcag	Protospacer
***** **********.******.. . *

56. spacer 1.1|116771|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NC_023856 (Salmonella phage vB_SalM_SJ2, complete genome) position: , mismatch: 8, identity: 0.733

aaaatggatttctgagcattactgtccgac	CRISPR spacer
aaaattgatttctgagtattactacatcag	Protospacer
***** **********.******.. . *

57. spacer 1.1|116771|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MH427377 (Escherichia phage vB_EcoM Sa157lw, complete genome) position: , mismatch: 8, identity: 0.733

aaaatggatttctgagcattactgtccgac	CRISPR spacer
aaaattgatttctgagtattactacatcag	Protospacer
***** **********.******.. . *

58. spacer 1.1|116771|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to FQ312032 (Salmonella phage Vi01 complete sequence) position: , mismatch: 8, identity: 0.733

aaaatggatttctgagcattactgtccgac	CRISPR spacer
aaaattgatttctgagtattactacatcag	Protospacer
***** **********.******.. . *

59. spacer 1.1|116771|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NC_015296 (Salmonella phage Vi01, complete genome) position: , mismatch: 8, identity: 0.733

aaaatggatttctgagcattactgtccgac	CRISPR spacer
aaaattgatttctgagtattactacatcag	Protospacer
***** **********.******.. . *

60. spacer 1.1|116771|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MN066127 (Salmonella phage Matapan, complete genome) position: , mismatch: 8, identity: 0.733

aaaatggatttctgagcattactgtccgac	CRISPR spacer
aaaattgatttctgagtattactacatcag	Protospacer
***** **********.******.. . *

61. spacer 1.2|116837|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NC_004349 (Shewanella oneidensis MR-1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.733

gactataccaatgaggtcgaagcatggtta	CRISPR spacer
gactgtaccaatgaggtggaagcgccctgt	Protospacer
****.************ *****..  *

62. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 8, identity: 0.733

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gacgaggccgccgaggaagccggcggcaag	Protospacer
 **.*****.***************.   .

63. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to JN106173 (Uncultured bacterium plasmid pAKD31, complete sequence) position: , mismatch: 8, identity: 0.733

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gacaacgccaccgaggaggccggccatgac	Protospacer
 **** ***********.****** *

64. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to JN106174 (Uncultured bacterium plasmid pAKD33, complete sequence) position: , mismatch: 8, identity: 0.733

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gacaacgccaccgaggaggccggccatgac	Protospacer
 **** ***********.****** *

65. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to JN106165 (Uncultured bacterium plasmid pAKD14, complete sequence) position: , mismatch: 8, identity: 0.733

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gacaacgccaccgaggaggccggccatgac	Protospacer
 **** ***********.****** *

66. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to JN106166 (Uncultured bacterium plasmid pAKD15, complete sequence) position: , mismatch: 8, identity: 0.733

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gacaacgccaccgaggaggccggccatgac	Protospacer
 **** ***********.****** *

67. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to JN106168 (Uncultured bacterium plasmid pAKD17, complete sequence) position: , mismatch: 8, identity: 0.733

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gacaacgccaccgaggaggccggccatgac	Protospacer
 **** ***********.****** *

68. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP038640 (Cupriavidus oxalaticus strain X32 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.733

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gacaacgccaccgaggaggccggccatgac	Protospacer
 **** ***********.****** *

69. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.733

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gagaaggccgccgaggaagccggcatgacg	Protospacer
 * ******.**************. * ..

70. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NC_019320 (Variovorax sp. DB1 plasmid pDB1, complete sequence) position: , mismatch: 8, identity: 0.733

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gacaacgccaccgaggaggccggccatgac	Protospacer
 **** ***********.****** *

71. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to KY676784 (Streptomyces phage ToastyFinz, complete genome) position: , mismatch: 8, identity: 0.733

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gcgaaggccgccgaggacgccggcgacgaa	Protospacer
   ******.******* ********   *

72. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to KY092482 (Streptomyces phage Mojorita, complete genome) position: , mismatch: 8, identity: 0.733

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gagcaggccgccgaggaggccggcgagaag	Protospacer
 *  *****.*******.*********  .

73. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to KY092480 (Streptomyces phage Picard, complete genome) position: , mismatch: 8, identity: 0.733

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
gagcaggccgccgaggaggccggcgagaag	Protospacer
 *  *****.*******.*********  .

74. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_LR134463 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 21, complete sequence) position: , mismatch: 8, identity: 0.733

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
ttccgcgccgccgagaaagccggcgagctc	Protospacer
. * . ***.*****.*************

75. spacer 1.7|117167|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ttaggttgagctggatcgggatcaggatcg	CRISPR spacer
gcgggttgagctggaacgggatcaggccga	Protospacer
 ..************ ********** . .

76. spacer 1.8|117233|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MH617654 (Caudovirales sp. isolate ctbf53, complete genome) position: , mismatch: 8, identity: 0.733

tctgttgtttaatttgttttagattgttac	CRISPR spacer
attgttgtttaatttgtttaacatttacag	Protospacer
 .***************** * ***  .*

77. spacer 1.11|117431|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to KM879463 (Arthrobacter phage vB_ArtM-ArV1, complete genome) position: , mismatch: 8, identity: 0.733

gcggccacgaccgccatgggtgtcagcgcc	CRISPR spacer
ggtttccaaaccgccatgggtgtcagcacc	Protospacer
*   .*  .******************.**

78. spacer 1.18|117893|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MT104467 (Pseudomonas phage MR4, complete genome) position: , mismatch: 8, identity: 0.733

acgtctttcagcccagtaaactgctcaagt	CRISPR spacer
agtgacttcagcccattgaactgctcaagc	Protospacer
*    .********* *.***********.

79. spacer 1.18|117893|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NC_047802 (Pectobacterium phage PP99, complete genome) position: , mismatch: 8, identity: 0.733

acgtctttcagcccagtaaactgctcaagt	CRISPR spacer
agtgacttcagcccattgaactgctcaagc	Protospacer
*    .********* *.***********.

80. spacer 1.18|117893|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to KJ749827 (Escherichia phage ECBP5, complete genome) position: , mismatch: 8, identity: 0.733

acgtctttcagcccagtaaactgctcaagt	CRISPR spacer
agtgacttcagcccattgaactgctcaagc	Protospacer
*    .********* *.***********.

81. spacer 1.22|118157|30|CP013149|CRISPRCasFinder,CRT,CRT,PILER-CR matches to MH616711 (Inoviridae sp. isolate ctbe45, complete genome) position: , mismatch: 8, identity: 0.733

caatcagaaagaagatgacgactataatgc	CRISPR spacer
gtggcagaaagaagatgacgcctatgcttc	Protospacer
  . **************** ****. * *

82. spacer 1.24|118289|30|CP013149|CRISPRCasFinder,CRT,CRT,PILER-CR matches to NC_015729 (Roseobacter litoralis Och 149 plasmid pRLO149_63, complete sequence) position: , mismatch: 8, identity: 0.733

aactgggagcggtcaacaccccaggctgtg	CRISPR spacer
ttctgggagaggtcaacacccccggcctgc	Protospacer
  ******* ************ ***.

83. spacer 1.24|118289|30|CP013149|CRISPRCasFinder,CRT,CRT,PILER-CR matches to NZ_CP027408 (Roseobacter denitrificans strain FDAARGOS_309 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

aactgggagcggtcaacaccccaggctgtg	CRISPR spacer
ttctgggagaggtcaacacccccggcctgc	Protospacer
  ******* ************ ***.

84. spacer 1.24|118289|30|CP013149|CRISPRCasFinder,CRT,CRT,PILER-CR matches to NZ_CP026745 (Nocardia cyriacigeorgica strain MDA3349 isolate MDA3349 ancestor plasmid p_unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

aactgggagcggtcaacaccccaggctgtg	CRISPR spacer
gcacaggagcggtcgacaccccgggctgtt	Protospacer
.  ..*********.*******.******

85. spacer 1.24|118289|30|CP013149|CRISPRCasFinder,CRT,CRT,PILER-CR matches to NC_008387 (Roseobacter denitrificans OCh 114 plasmid pTB2, complete sequence) position: , mismatch: 8, identity: 0.733

aactgggagcggtcaacaccccaggctgtg	CRISPR spacer
ttctgggagaggtcaacacccccggcctgc	Protospacer
  ******* ************ ***.

86. spacer 1.35|118780|31|CP013149|PILER-CR matches to NZ_CP015089 (Pelagibaca abyssi strain JLT2014 plasmid pPABY5, complete sequence) position: , mismatch: 8, identity: 0.742

cgatggtgctgttgcacgtgatcccgcgctt	CRISPR spacer
tctccgagctgttccaggtgatcccgcgctt	Protospacer
.  . * ****** ** **************

87. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP010801 (Ralstonia mannitolilytica strain SN82F48 plasmid pRMAN01, complete sequence) position: , mismatch: 9, identity: 0.7

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
atccccttcaccgaggaagccggcgtgctc	Protospacer
  *    .***************** ***

88. spacer 1.3|116903|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 9, identity: 0.7

cacaaggccaccgaggaagccggcgagcta	CRISPR spacer
aagcgcgccaccgaggatgccggcgagggc	Protospacer
 *  . *********** *********

89. spacer 1.6|117101|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to MN693509 (Marine virus AFVG_25M367, complete genome) position: , mismatch: 9, identity: 0.7

aactcatcataaatgacgtcttttaccgag	CRISPR spacer
tcatcatcataaacgacttcttttactcct	Protospacer
   **********.*** ********.

90. spacer 1.6|117101|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP012101 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence) position: , mismatch: 9, identity: 0.7

aactcatcataaatgacgtcttttaccgag	CRISPR spacer
tcatcatcataaatggcgtcttttttttat	Protospacer
   ************.******** .. *

91. spacer 1.18|117893|30|CP013149|PILER-CR,CRISPRCasFinder,CRT,CRT matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

acgtctttcagcccagtaaactgctcaagt	CRISPR spacer
ttaaataagagcccaggaaactgctcaagt	Protospacer
 ..  *   ******* *************

92. spacer 1.23|118223|30|CP013149|CRISPRCasFinder,CRT,CRT,PILER-CR matches to MN582058 (Caudovirales sp. ctOwN3, complete genome) position: , mismatch: 9, identity: 0.7

gacttataccagcagtaccgaagacggtta	CRISPR spacer
actagataccagcagtaccgaatacggcac	Protospacer
. .  ***************** ****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

573390 : 582133

Streptococcus_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
APD00296.1\|573390_575088_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	3.9e-55	37.0
APD02616.2\|575109_575418_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
APD00297.1\|575433_576033_+	recombination protein RecR	NA	NA	NA	NA
APD00298.1\|576047_576299_+	DUF2508 family protein	NA	NA	NA	NA
APD00299.1\|576815_577481_+	thymidylate kinase	M1PSC7	Streptococcus_phage	1.4e-53	52.7
APD00300.1\|577477_577807_+	hypothetical protein	NA	NA	NA	NA
APD00301.1\|577823_578843_+	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.1e-32	33.5
APD00302.1\|578867_579215_+	initiation-control protein YabA	M1PFV3	Streptococcus_phage	2.4e-12	33.3
APD00303.1\|579313_580210_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	9.9e-82	55.7
APD00304.1\|580213_580999_+	acyl-ACP thioesterase	NA	NA	NA	NA
APD00305.1\|581137_582133_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	2.0e-51	38.5

DBSCAN-SWA_2

1145796 : 1218346

Lactobacillus_phage(77.55%)

holin,tRNA,capsid,tail,terminase,transposase,portal,head,protease,integrase

attL 1153027:1153043|attR 1196816:1196832

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
APD00774.2\|1145796_1146462_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
APD00775.2\|1147154_1147634_-	MarR family transcriptional regulator	NA	NA	NA	NA
APD00776.1\|1147747_1148260_-	hypothetical protein	NA	NA	NA	NA
APD00777.1\|1148374_1148662_+	hypothetical protein	NA	NA	NA	NA
APD00778.2\|1148723_1150994_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	8.8e-119	31.5
APD00779.1\|1151268_1152444_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	4.2e-40	30.0
1153027:1153043	attL	NA	NA	NA	NA
APD00780.1\|1153159_1154296_-\|integrase	site-specific integrase	E9LUS1	Lactobacillus_phage	6.2e-214	99.5
APD00781.2\|1154409_1155396_-	Abi family protein	X2L062	Streptococcus_phage	2.1e-32	30.8
APD00782.1\|1155855_1156218_-	hypothetical protein	E9LUS2	Lactobacillus_phage	2.3e-53	85.8
APD00783.1\|1156849_1157725_-	hypothetical protein	NA	NA	NA	NA
APD00784.1\|1157857_1158562_-	LexA family transcriptional regulator	E9LUS8	Lactobacillus_phage	7.1e-128	98.7
APD00785.1\|1158730_1158964_+	XRE family transcriptional regulator	E9LUS9	Lactobacillus_phage	8.9e-35	97.4
APD00786.1\|1158979_1159687_+	hypothetical protein	E9LUT0	Lactobacillus_phage	1.1e-107	84.4
APD00787.1\|1159701_1159926_+	hypothetical protein	A0A182BQC3	Lactococcus_phage	2.7e-12	58.8
APD00788.1\|1159903_1160392_-	hypothetical protein	NA	NA	NA	NA
APD00789.1\|1160487_1160817_+	DUF771 domain-containing protein	E9LUT3	Lactobacillus_phage	5.6e-51	84.4
APD00790.1\|1160906_1161086_+	DNA-binding protein	E9LUT5	Lactobacillus_phage	2.2e-25	100.0
APD00791.1\|1161119_1161374_+	hypothetical protein	NA	NA	NA	NA
APD00792.1\|1161376_1161577_+	hypothetical protein	E9LUT7	Lactobacillus_phage	1.0e-26	89.4
APD00793.1\|1161925_1162786_+	DUF1351 domain-containing protein	A0A2D1GPE4	Lactobacillus_phage	7.6e-31	35.6
APD00794.1\|1162785_1163412_+	single-stranded DNA-binding protein	D7RWM8	Brochothrix_phage	1.4e-13	37.4
APD00795.1\|1163408_1163870_+	single-stranded DNA-binding protein	A0A218MNB4	uncultured_virus	1.4e-39	70.9
APD00796.1\|1163885_1164452_+	HNH endonuclease	A0A249XVQ5	Enterococcus_phage	1.8e-20	34.6
APD00797.1\|1164457_1165150_+	hypothetical protein	E9LUU3	Lactobacillus_phage	4.1e-120	91.6
APD00798.1\|1165139_1165343_+	hypothetical protein	NA	NA	NA	NA
APD00799.1\|1165410_1166154_+	replisome organizer	E9LUM6	Lactobacillus_phage	2.9e-39	56.6
APD00800.1\|1166153_1166939_+	ATP-binding protein	E9LUN6	Lactobacillus_phage	1.4e-132	91.6
APD00801.1\|1167074_1167383_+	hypothetical protein	E9LUN7	Lactobacillus_phage	3.0e-46	90.2
APD00802.1\|1167484_1168204_+	SAM-dependent DNA methyltransferase	D6PSV0	Lactobacillus_phage	1.3e-105	94.9
APD00803.1\|1168537_1169047_+	DUF1642 domain-containing protein	A0A2K9VC25	Lactobacillus_phage	7.9e-52	62.7
APD00804.1\|1169043_1169391_+	hypothetical protein	A0A142F1A4	Bacillus_phage	8.4e-13	44.3
AXN90775.1\|1169387_1169558_+	hypothetical protein	E9LUP4	Lactobacillus_phage	1.1e-18	89.3
APD00805.1\|1169538_1169964_+	transcriptional regulator	E9LUP5	Lactobacillus_phage	3.2e-67	87.9
APD00806.1\|1170463_1170976_+	HNH endonuclease	E9LUP7	Lactobacillus_phage	1.5e-79	89.1
APD00807.1\|1171183_1171642_+\|terminase	phage terminase small subunit P27 family	E9LUP8	Lactobacillus_phage	9.5e-81	97.4
APD00808.1\|1173582_1173777_+	DUF1056 family protein	E9LUQ0	Lactobacillus_phage	1.8e-25	95.3
APD00809.1\|1173779_1174973_+\|portal	phage portal protein	E9LUQ1	Lactobacillus_phage	2.2e-222	98.0
APD00810.1\|1174950_1175706_+\|protease	Clp protease ClpP	E9LUQ2	Lactobacillus_phage	1.3e-122	92.4
APD00811.1\|1175705_1176938_+\|capsid	phage major capsid protein	E9LUQ3	Lactobacillus_phage	1.4e-208	91.6
APD00812.1\|1177010_1177349_+\|head,tail	phage gp6-like head-tail connector protein	E9LUQ4	Lactobacillus_phage	7.0e-57	100.0
APD00813.1\|1177332_1177695_+\|head,tail	head-tail adaptor protein	E9LUQ5	Lactobacillus_phage	5.2e-66	100.0
APD00814.1\|1177684_1178125_+\|tail	phage tail protein	E9LUQ6	Lactobacillus_phage	8.0e-77	97.9
APD00815.1\|1178121_1178505_+	hypothetical protein	E9LUQ7	Lactobacillus_phage	1.0e-64	96.9
APD00816.1\|1178505_1179144_+\|tail	phage tail protein	E9LUQ8	Lactobacillus_phage	1.9e-103	90.1
APD00817.1\|1179345_1179729_+	hypothetical protein	E9LUQ9	Lactobacillus_phage	3.3e-63	98.4
APD00818.1\|1179725_1179917_+	hypothetical protein	E9LUR0	Lactobacillus_phage	1.5e-27	100.0
APD00820.1\|1185538_1187311_+\|tail	phage tail protein	E9LUR2	Lactobacillus_phage	0.0e+00	95.9
APD00821.1\|1187377_1189735_+	hypothetical protein	E9LUR3	Lactobacillus_phage	0.0e+00	90.9
APD00822.1\|1189736_1193312_+\|tail	phage tail protein	E9LUR4	Lactobacillus_phage	1.6e-244	64.0
APD00823.1\|1193304_1193556_+	hypothetical protein	A0A2K9VDF6	Lactobacillus_phage	1.0e-28	91.5
APD00824.1\|1194219_1194759_+	hypothetical protein	A0A1I9KKB3	Lactobacillus_phage	2.0e-53	56.7
APD02633.2\|1194770_1195925_+	LysM peptidoglycan-binding domain-containing protein	O03950	Lactobacillus_phage	3.1e-43	36.9
APD00825.1\|1195924_1196188_+\|holin	holin	E9LUR9	Lactobacillus_phage	5.3e-36	94.3
APD00826.2\|1196202_1196577_+\|holin	holin	A0A2P0ZLG6	Lactobacillus_phage	1.0e-11	59.8
APD00827.1\|1197153_1197579_-	lipoprotein	NA	NA	NA	NA
1196816:1196832	attR	NA	NA	NA	NA
AXN90776.1\|1197591_1197711_-	hypothetical protein	NA	NA	NA	NA
APD00828.2\|1197743_1198814_-	hypothetical protein	NA	NA	NA	NA
APD00829.2\|1198868_1199384_+	GtrA family protein	NA	NA	NA	NA
APD00830.2\|1199483_1199843_-	DUF1516 family protein	NA	NA	NA	NA
APD00831.1\|1199915_1201772_-	bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase	NA	NA	NA	NA
APD00832.1\|1201785_1204092_-	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase	NA	NA	NA	NA
APD00833.1\|1204980_1206618_+	sulfotransferase family protein	NA	NA	NA	NA
APD00834.1\|1206595_1207771_+	sulfate adenylyltransferase	A0A2P1ELS9	Moumouvirus	3.8e-49	31.7
APD00835.1\|1207773_1208397_+	adenylyl-sulfate kinase	A0A2K9L4R9	Tupanvirus	6.3e-27	40.6
APD02634.2\|1208365_1209343_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA
APD00836.1\|1209564_1211304_+	aryl-sulfate sulfotransferase	NA	NA	NA	NA
APD00837.1\|1211736_1213512_+	SLC13 family permease	NA	NA	NA	NA
APD00838.1\|1213786_1215178_+	MATE family efflux transporter	NA	NA	NA	NA
APD00839.1\|1215304_1215550_+	DUF2187 domain-containing protein	NA	NA	NA	NA
APD00840.1\|1215939_1216386_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
APD00841.1\|1216657_1218346_+\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	1.2e-75	32.9

DBSCAN-SWA_3

1246933 : 1258899

Lactobacillus_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
APD00863.1\|1246933_1247881_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	2.7e-178	100.0
APD00864.1\|1248224_1248839_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	6.3e-112	100.0
APD00865.1\|1248841_1251280_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	0.0e+00	99.8
APD00866.1\|1251367_1251928_+	hypothetical protein	A0A2P0ZL75	Lactobacillus_phage	2.7e-101	100.0
APD00867.1\|1251998_1252439_-	nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	5.2e-76	98.6
APD00868.1\|1252783_1253251_+	hypothetical protein	A0A2P0ZL91	Lactobacillus_phage	6.1e-83	99.4
APD00869.1\|1253225_1254200_+	hypothetical protein	A0A2P0ZL95	Lactobacillus_phage	5.0e-31	90.7
APD00870.1\|1254303_1254513_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
APD00871.1\|1256625_1258899_-	HAD family hydrolase	M1HX51	Paramecium_bursaria_Chlorella_virus	1.3e-37	23.5

DBSCAN-SWA_4

2091773 : 2145480

Lactobacillus_phage(36.11%)

holin,capsid,tail,terminase,transposase,portal,head,protease,integrase

attL 2132332:2132345|attR 2144271:2144284

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
APD01620.1\|2091773_2093504_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.6e-46	27.6
APD01621.1\|2093727_2094120_-	YxeA family protein	NA	NA	NA	NA
APD01622.1\|2094342_2095194_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
APD01623.1\|2095190_2095349_-	cytochrome D ubiquinol oxidase	NA	NA	NA	NA
APD01624.1\|2096115_2096652_-\|holin	holin	E9LUS0	Lactobacillus_phage	6.4e-36	98.8
APD01625.1\|2096663_2096927_-\|holin	holin	E9LUR9	Lactobacillus_phage	2.0e-38	100.0
APD01626.1\|2096926_2098105_-	LysM peptidoglycan-binding domain-containing protein	E9LUR8	Lactobacillus_phage	1.1e-197	88.3
APD01627.1\|2098232_2098667_-	hypothetical protein	NA	NA	NA	NA
APD01628.1\|2098669_2099119_-	DUF1617 family protein	A0A2P0ZLE0	Lactobacillus_phage	6.8e-23	40.5
APD01629.1\|2099125_2104447_-	hypothetical protein	Q6SE68	Lactobacillus_prophage	6.4e-144	59.4
APD01630.2\|2104461_2104794_-	hypothetical protein	V5UQS8	Oenococcus_phage	2.2e-42	73.4
APD01631.1\|2104837_2110669_-\|tail	phage tail protein	V5URV5	Oenococcus_phage	1.2e-223	40.7
APD02655.1\|2110684_2110948_-	hypothetical protein	V9QKH3	Oenococcus_phage	2.3e-23	65.4
APD01632.1\|2111055_2111454_-	hypothetical protein	V9QJA0	Oenococcus_phage	6.6e-46	74.0
APD01633.2\|2111553_2111937_-\|tail	phage tail protein	V5USQ9	Oenococcus_phage	1.8e-37	58.4
APD01634.1\|2112038_2112404_-	hypothetical protein	V5UQS4	Oenococcus_phage	3.0e-29	53.4
APD01635.1\|2112403_2112955_-	HK97 gp10 family phage protein	V5URV0	Oenococcus_phage	3.3e-64	61.7
APD01636.1\|2112956_2113304_-	hypothetical protein	V5US85	Oenococcus_phage	3.2e-36	62.3
APD01637.1\|2113303_2113636_-	hypothetical protein	V9QJ97	Oenococcus_phage	1.8e-12	45.3
APD01638.1\|2113647_2113824_-	conjugal transfer protein	NA	NA	NA	NA
APD01639.1\|2113836_2114859_-\|capsid	minor capsid protein E	V5US24	Oenococcus_phage	1.4e-116	62.2
APD01640.1\|2114878_2115229_-	hypothetical protein	V5UTH9	Oenococcus_phage	1.5e-30	63.8
APD01641.1\|2115243_2115921_-	DUF4355 domain-containing protein	Q6SE80	Lactobacillus_prophage	6.4e-17	33.5
APD01642.1\|2116093_2116300_-	hypothetical protein	NA	NA	NA	NA
APD01643.2\|2116351_2116552_-	hypothetical protein	NA	NA	NA	NA
APD01644.1\|2116604_2118290_-\|head	phage head morphogenesis protein	V5US81	Oenococcus_phage	9.1e-121	58.8
APD01645.1\|2118436_2118733_-\|protease	ribosomal-processing cysteine protease Prp	D2J003	Enterococcus_phage	1.5e-10	39.2
APD01646.1\|2118662_2120171_-\|portal	phage portal protein	V5US18	Oenococcus_phage	1.2e-135	51.8
APD01647.1\|2120182_2121421_-\|terminase	PBSX family phage terminase large subunit	M1PG09	Streptococcus_phage	1.9e-139	61.3
APD01648.1\|2121410_2121938_-\|terminase	terminase small subunit	O03926	Lactobacillus_phage	4.5e-58	75.7
APD01650.1\|2122364_2122562_-	hypothetical protein	NA	NA	NA	NA
APD01651.1\|2123325_2124597_-	hypothetical protein	NA	NA	NA	NA
APD01652.1\|2124612_2125482_-	DNA adenine methylase	A0A1S5PRR3	Streptococcus_phage	8.9e-80	51.4
APD01653.1\|2126256_2126718_-	transcriptional regulator	D6PSV8	Lactobacillus_phage	6.3e-40	57.0
APD01654.1\|2126928_2127309_-	hypothetical protein	NA	NA	NA	NA
APD01655.1\|2127305_2127824_-	hypothetical protein	O03915	Lactobacillus_phage	2.9e-54	69.1
APD01656.1\|2127820_2128108_-	hypothetical protein	NA	NA	NA	NA
APD01657.1\|2128104_2129013_-	DnaD domain protein	NA	NA	NA	NA
APD02656.2\|2129091_2129952_-	hypothetical protein	A0A0P0IZH9	Lactobacillus_phage	3.8e-75	50.6
APD01658.1\|2129875_2130763_-	recombinase RecT	E9LUM3	Lactobacillus_phage	1.6e-60	47.0
APD01659.2\|2130759_2131146_-	hypothetical protein	NA	NA	NA	NA
AXN90803.1\|2131278_2131449_-	hypothetical protein	NA	NA	NA	NA
APD01660.1\|2131516_2132029_-	XRE family transcriptional regulator	D6PST4	Lactobacillus_phage	8.0e-28	43.5
APD01661.1\|2132096_2132402_-	DUF771 domain-containing protein	NA	NA	NA	NA
2132332:2132345	attL	NA	NA	NA	NA
APD01662.1\|2132742_2132943_-	XRE family transcriptional regulator	NA	NA	NA	NA
APD01663.1\|2133089_2133326_+	XRE family transcriptional regulator	A0A0K2CNE2	Brevibacillus_phage	8.5e-09	30.7
APD01664.1\|2133363_2133678_+	hypothetical protein	NA	NA	NA	NA
APD01665.1\|2133750_2133981_-	XRE family transcriptional regulator	NA	NA	NA	NA
APD01666.1\|2134154_2134517_+	helix-turn-helix domain-containing protein	A0A0U4KKM4	Exiguobacterium_phage	2.6e-09	32.0
APD01667.1\|2134528_2134942_+	ImmA/IrrE family metallo-endopeptidase	A0A0M4RD70	Bacillus_phage	3.4e-05	31.3
APD01668.1\|2134967_2136314_+	DUF4041 domain-containing protein	A0A1B0Y697	Lactobacillus_phage	3.9e-82	52.7
APD01669.1\|2136363_2137065_+	DUF3862 domain-containing protein	A0A0P0IXE0	Lactobacillus_phage	2.0e-05	80.8
APD01670.1\|2137836_2138214_+	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
APD01671.1\|2138240_2138600_+	hypothetical protein	NA	NA	NA	NA
APD01672.1\|2138630_2138912_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
APD01673.1\|2139660_2140755_+	hypothetical protein	NA	NA	NA	NA
APD01674.1\|2141044_2142166_+\|integrase	site-specific integrase	D6PSS4	Lactobacillus_phage	9.9e-47	32.7
APD01675.1\|2142516_2142723_-	hypothetical protein	NA	NA	NA	NA
APD01676.1\|2143135_2143369_+	hypothetical protein	NA	NA	NA	NA
APD01677.1\|2143393_2143666_+	hypothetical protein	NA	NA	NA	NA
APD01678.1\|2143824_2145480_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	4.6e-93	41.5
2144271:2144284	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2346251 : 2354765

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
APD01838.1\|2346251_2346830_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.9e-22	35.0
APD01839.1\|2346822_2347848_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	8.4e-61	41.7
APD01840.1\|2347844_2349299_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.5e-50	34.0
APD01841.1\|2349283_2351503_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.5e-144	39.1
APD02662.2\|2351495_2352176_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
APD01842.1\|2352175_2352430_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
APD01843.1\|2352431_2353163_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	2.1e-37	37.3
APD01844.1\|2353165_2354296_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
APD01845.1\|2354279_2354765_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.3e-16	41.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP013155

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8895 : 18090

unidentified_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXN90893.1\|8895_9825_+\|transposase	IS30 family transposase	H7BW47	unidentified_phage	6.7e-25	34.1
APD02875.2\|9839_11879_-	RNA-directed DNA polymerase	A0A0H4TEY7	Erysipelothrix_phage	2.0e-29	27.4
APD02874.1\|12123_13293_+	RNA-directed DNA polymerase	H7BUU7	unidentified_phage	3.0e-06	27.0
APD02873.1\|13696_14278_+	recombinase family protein	M9Q1K0	Clostridium_phage	2.4e-20	34.7
APD02872.1\|14679_15603_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	6.6e-49	40.3
APD02871.1\|15840_18090_+	ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent	S5Y360	Mycobacterium_phage	1.9e-89	33.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP013149

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP013155

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection