CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026501	Corynebacterium pseudotuberculosis strain MB295 chromosome, complete genome	3 crisprs	cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5,DEDDh,WYL,cas4,csa3,DinG	0	8	1	0

1. CP026501

CRISPR-Cas detection and classification

Crispr_ID: CP026501_1

• CRISPR_ID: CP026501_1
• CRISPR_location: 22353-22566
• CRISPR_type: TypeI-E
• Repeat_type: I-C,I-E,II-B
• Spacer_info: 3 spacers
• Cas_protein_info: cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5

Consensus repeat of CP026501_1

Consensus_repeat	Method
ACGGGAACTACCTCCGCATACGCGGAGAAAAGT	PILER-CR
GGAACTACCTCCGCATACGCGGAGAAAAG	CRISPRCasFinder
GGAACTACCTCCGCATACGCGGAGAAAAGT	CRT

spacers of CP026501_1

>1.1|22386|28|CP026501|PILER-CR
CAGCAACGGTGAGAATCTTTTTTTCGCG
>1.2|22447|28|CP026501|PILER-CR
TGGTGTTCCAATAATGCTTTTGCTGCCA
>1.3|22383|32|CP026501|CRISPRCasFinder
TCAGCAACGGTGAGAATCTTTTTTTCGCGACG
>1.4|22444|32|CP026501|CRISPRCasFinder
TTGGTGTTCCAATAATGCTTTTGCTGCCAACT
>1.5|22505|32|CP026501|CRISPRCasFinder
TGCCTGATTCACTGTCAGCCCGTAAAGCTCAC
>1.6|22384|31|CP026501|CRT
CAGCAACGGTGAGAATCTTTTTTTCGCGACG
>1.7|22445|31|CP026501|CRT
TGGTGTTCCAATAATGCTTTTGCTGCCAACT
>1.8|22506|31|CP026501|CRT
GCCTGATTCACTGTCAGCCCGTAAAGCTCAC

CRISPR arrays and Neighbor proteins around CP026501_1

CRISPR arrays

The CRISPR arrays of CP026501_1

>merge|CP026501|1|22353-22566|PILER-CR,CRISPRCasFinder,CRT
GGGAACTACCTCCGCATACGCGGAGAAAAGTCAGCAACGGTGAGAATCTTTTTTTCGCGACGGGAACTACCTCCGTATACGCGGAGAAAAGTTGGTGTTCCAATAATGCTTTTGCTGCCAACTGGAACTACCTCCGCATACGCGGAGAAAAGTGCCTGATTCACTGTCAGCCCGTAAAGCTCACGGAACTACCTCCGCATACGCGGAGAAAAGA

>CP026501|1|1|22353-22505|PILER-CR
GGGAACTACCTCCGCATACGCGGAGAAAAGTCA	GCAACGGTGAGAATCTTTTTTTCGCGAC
GGGAACTACCTCCGTATACGCGGAGAAAAGTTG	GTGTTCCAATAATGCTTTTGCTGCCAAC
TGGAACTACCTCCGCATACGCGGAGAAAAGT

>CP026501|1|1|22354-22565|CRISPRCasFinder
GGAACTACCTCCGCATACGCGGAGAAAAG	TCAGCAACGGTGAGAATCTTTTTTTCGCGACG
GGAACTACCTCCGTATACGCGGAGAAAAG	TTGGTGTTCCAATAATGCTTTTGCTGCCAACT
GGAACTACCTCCGCATACGCGGAGAAAAG	TGCCTGATTCACTGTCAGCCCGTAAAGCTCAC
GGAACTACCTCCGCATACGCGGAGAAAAG

>CP026501|1|1|22354-22566|CRT
GGAACTACCTCCGCATACGCGGAGAAAAGT	CAGCAACGGTGAGAATCTTTTTTTCGCGACG
GGAACTACCTCCGTATACGCGGAGAAAAGT	TGGTGTTCCAATAATGCTTTTGCTGCCAACT
GGAACTACCTCCGCATACGCGGAGAAAAGT	GCCTGATTCACTGTCAGCCCGTAAAGCTCAC
GGAACTACCTCCGCATACGCGGAGAAAAGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP026501.1|AUY59412.1|21444_21570_-|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY59424.1|33037_33961_+|Phospholipase-D	unknown	unknown	gnl|CDD|176518
CP026501.1|AUY59421.1|29743_30811_+|CRISPR-associated-protein,-CT1975-family	cas7	pfam09344_cas7_CAS-I-E	gnl|CDD|378153
CP026501.1|AUY59417.1|23911_26599_-|CRISPR-associated-helicase-Cas3-protein	cas3	COG1203_cas3_CAS-I	gnl|CDD|182031
CP026501.1|AUY59413.1|21719_22019_-|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY59420.1|29150_29744_+|CRISPR-associated-protein-Cse2	cse2gr11	mkCas0096_cse2gr11_CAS-I-E	gnl|CDD|274193
CP026501.1|AUY59410.1|20951_21056_-|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY59418.1|26619_27330_-|CRISPR-associated-protein	cas6e	cd09727_cas6e_CAS-I-E	gnl|CDD|187858
CP026501.1|AUY59423.1|31589_32630_-|Insertion-element-protein:-transposase	unknown	unknown	gnl|CDD|226202
CP026501.1|AUY59411.1|21192_21531_+|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY59409.1|19999_20155_-|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY59419.1|27540_29154_+|Hypothetical-protein	cas8e	cls000721_cas8e_CAS-I-E	gnl|CDD|378189
CP026501.1|AUY59415.1|22583_22955_-|CRISPR-associated-protein	cas2	pfam09707_cas2_CAS-I-E	gnl|CDD|378244
CP026501.1|AUY59408.1|19913_20072_+|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY59404.1|16766_17540_+|Ribose-import-ATP-binding-protein-RbsA	unknown	unknown	gnl|CDD|224053
CP026501.1|AUY59416.1|22955_23909_-|CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl|CDD|274693
CP026501.1|AUY59406.1|18390_18927_+|Peptidyl-prolyl-cis-trans-isomerase-A	unknown	unknown	gnl|CDD|223725
CP026501.1|AUY59407.1|18988_19759_+|rhomboid-family-protein	unknown	unknown	gnl|CDD|366759
CP026501.1|AUY59422.1|31161_31515_+|CRISPR-associated-protein-Cas5	cas5	cd09756_cas5_CAS-I-E	gnl|CDD|187776
CP026501.1|AUY59405.1|17641_18313_-|Hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
CP026501.1|AUY59420.1|29150_29744_+|CRISPR-associated-protein-Cse2	cse2gr11	mkCas0096_cse2gr11_CAS-I-E	1.9e-73	241.2	0.5
CP026501.1|AUY59419.1|27540_29154_+|Hypothetical-protein	cas8e	cls000721_cas8e_CAS-I-E	3.8e-90	297.6	0.0
CP026501.1|AUY59417.1|23911_26599_-|CRISPR-associated-helicase-Cas3-protein	cas3	COG1203_cas3_CAS-I	1.2e-52	173.8	0.0
CP026501.1|AUY59415.1|22583_22955_-|CRISPR-associated-protein	cas2	pfam09707_cas2_CAS-I-E	2.7e-23	76.7	0.0
CP026501.1|AUY59416.1|22955_23909_-|CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	6.7e-68	223.4	0.0
CP026501.1|AUY59418.1|26619_27330_-|CRISPR-associated-protein	cas6e	cd09727_cas6e_CAS-I-E	7e-36	118.9	0.0
CP026501.1|AUY59421.1|29743_30811_+|CRISPR-associated-protein,-CT1975-family	cas7	pfam09344_cas7_CAS-I-E	4.4e-85	281.1	0.6
CP026501.1|AUY59422.1|31161_31515_+|CRISPR-associated-protein-Cas5	cas5	cd09756_cas5_CAS-I-E	5.8e-15	50.2	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP026501.1|AUY59406.1|18390_18927_+|Peptidyl-prolyl-cis-trans-isomerase-A	gnl|CDD|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	2.26866e-65
CP026501.1|AUY59417.1|23911_26599_-|CRISPR-associated-helicase-Cas3-protein	gnl|CDD|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.61081e-51
CP026501.1|AUY59420.1|29150_29744_+|CRISPR-associated-protein-Cse2	gnl|CDD|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.93072e-07
CP026501.1|AUY59424.1|33037_33961_+|Phospholipase-D	gnl|CDD|176518	cd08576, GDPD_like_SMaseD_PLD, Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline and lysophosphatidic acid (LPA), which is a multifunctional phospholipid involved in platelet aggregation, endothelial hyperpermeability, and pro-inflammatory responses. Loxosceles spider venoms' SMases D are the principal toxins responsible for dermonecrosis and complement dependent haemolysis induced by spider venom. Due to amino acid substitutions at the entrance to the active-site pocket, some members lack activity. The typical GDPD domain consists of a TIM barrel and a small insertion domain named as the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. Although proteins in this family contain a non-typical GDPD domain which lacks the GDPD-I, their catalytic mechanisms are based on Mg2+-dependent acid-base reactions similar to GDPD proteins. They might be divergent members of the GDPD family. Moreover, this family does not belong to phospholipase D (PLD) superfamily, since it lacks the conserved HKD sequence motif that characterizes the catalytic center of the PLD superfamily. It belongs to the superfamily of PLC-like phosphodiesterases.	7.16899e-90
CP026501.1|AUY59407.1|18988_19759_+|rhomboid-family-protein	gnl|CDD|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	5.95772e-21
CP026501.1|AUY59404.1|16766_17540_+|Ribose-import-ATP-binding-protein-RbsA	gnl|CDD|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	1.35107e-102
CP026501.1|AUY59419.1|27540_29154_+|Hypothetical-protein	gnl|CDD|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	0.00762068
CP026501.1|AUY59423.1|31589_32630_-|Insertion-element-protein:-transposase	gnl|CDD|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00655325
CP026501.1|AUY59415.1|22583_22955_-|CRISPR-associated-protein	gnl|CDD|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	3.51848e-22
CP026501.1|AUY59416.1|22955_23909_-|CRISPR-associated-endonuclease-Cas1	gnl|CDD|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.18457e-72
CP026501.1|AUY59418.1|26619_27330_-|CRISPR-associated-protein	gnl|CDD|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.17921e-34
CP026501.1|AUY59421.1|29743_30811_+|CRISPR-associated-protein,-CT1975-family	gnl|CDD|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.30424e-81
CP026501.1|AUY59422.1|31161_31515_+|CRISPR-associated-protein-Cas5	gnl|CDD|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.36174e-13

Protein sequences

>CP026501.1|AUY59413.1|21719_22019_-|Hypothetical-protein
MDFYDAITRIEATPSVSVRYGDSGVQDFELEEFLAGLVQEKAVVSDVEAKREFLSWFDEDDEWLDPDWDAPMVEQTVRDLHVFAGLEPKVEIHIPMPPA
>CP026501.1|AUY59412.1|21444_21570_-|Hypothetical-protein
MSGFVVQAVSFGLLAFGESAVVAGIVEGDGVVWVFTFLYSW
>CP026501.1|AUY59411.1|21192_21531_+|Hypothetical-protein
MRLCIYGNVDDGFSLHGRLGNAIGGSTLRSQIFERFQRTRVILANCRSALYLYCPANYRKLQLLAIAGRTSHECAFPTVRLVLELPAIKKCKDPHHTISLDDSGDYRRLSES
>CP026501.1|AUY59410.1|20951_21056_-|Hypothetical-protein
MGSVVLGDDDGGTDVLVVVGGTGGISGSSGSSWQ
>CP026501.1|AUY59409.1|19999_20155_-|Hypothetical-protein
MDKVVHFFPTWVFVRELLKKCRSFASKIQRLEIGEVNNTRVIIHSVDNSCG
>CP026501.1|AUY59408.1|19913_20072_+|Hypothetical-protein
MGFMPVYMELSTEITQIFGIICSSHNDMNYPQELSTLWIITRVLFTSPISNL
>CP026501.1|AUY59407.1|18988_19759_+|rhomboid-family-protein
MFHENGGMSDPRILHAAYKQAPVTVLLSLSTLIIFLITAFQSQSITDNLYDSWIGTHWILYTPEMHEPLGMLRAIGSMFLHIGPGHLAINIFLLFFLGREIEQCIGSALFCAAYFISGLGASLMIMIMDPLSPTAGASGAIYGLMAIMVAIAITRKTDIRAPLILVAVNVGYSLIADNVSLWGHIGGLVAGSVVALPLMAFHRKHVIAGGTGGFLVYGTPRNHHAFTKDRLITWFVVAAIVVCEAIGIWIVGMKLL
>CP026501.1|AUY59406.1|18390_18927_+|Peptidyl-prolyl-cis-trans-isomerase-A
MMVRMTLKTATAILHTNRGDVAIELFGNHAPKTVENFVTLADGSADYKTENASGTTEGPFYDGAVFHRIIDGFMIQGGDPTGTGRGGPGYMFADEFHPELQFDRPFLLAMANAGPGTNGSQFFITVVPTPHLNNHHTIFGEVTDPASQKVVMDIAQTATDRMDRPVEPVVIESVEITE
>CP026501.1|AUY59405.1|17641_18313_-|Hypothetical-protein
MNSSTIRGAILVTKAAYDKYANYRDRKTREAYDALLNAADSYDDIHKDVKANVTEFYDQSQERVSSLTEQARKRLDSAIADAAAAKDNTVKTVNKKSKKAQKAARKAAKSAKKSAAPKKQPSFGKRLFNFSVFTTILATIGAVAYYFLSKRDVVSTEPPHVEDFGADSVNTEESRLVYSTQTPVDDEEEHVSSPEEGATERDEKLLGSLEDQLRQHTDSKDTK
>CP026501.1|AUY59404.1|16766_17540_+|Ribose-import-ATP-binding-protein-RbsA
MDMSTTPIIELRDITKSYGAFDALRGVNLSVASGEVTCVLGDNGAGKSTLIKILSGLHKQSSGELLIDGQPVTFSGPREALDNGIATVHQNLAVVGQMSVWRNFFLGQELTGFLGRLRESEMRSIAQEQLKTMGIDLPDIDVEVESLSGGQRQVVAIARAVYFGARVIILDEPTAALGVKQSGMVLRFVAAARDKGLGVVLITHNPHHAYLVGDRFTILNLGNQILNASRDQVTLEQLTQQMAGGGELEALSHELSR
>CP026501.1|AUY59415.1|22583_22955_-|CRISPR-associated-protein
MFTVIQGHNLPNHLNGYLSRFLSEVDAGLYVGVLSRAVMENLWEKCQSVDLAGSLTLIHPQYDAEQGFRIRTTGKQRRPVVDLDGLFLSARGLIEDVRFADPLDEADAIIPDEVLEDFCPESE
>CP026501.1|AUY59416.1|22955_23909_-|CRISPR-associated-endonuclease-Cas1
MSYSNESLAFSTIPASEQIRLEDRVSFLYLEYCLIRQDRTGVIAVSRGDEKAPAELKDLPIKARIQLPVGGIAVLMLGPGTSISQPAATSCARAGVSVLFTGGGGVQAYSLSTPLTSSARWAIAQARLASNEAKQRTAARILYKRQLGIEEIEADSIAVMRGIEGRTIRNLYKRLSAKYKIKNFKRDTNATDPVNTNLNLGNSILYGCAASACAALGINPALGIIHRGDIRSLLFDLADLYKPTLTIPAAFKCANNDDDGSEFRRLVRSEIVKQDLLKNMIHIMMEILAPYLPERTDDRLIGGRNREVPGHTQYGGK
>CP026501.1|AUY59417.1|23911_26599_-|CRISPR-associated-helicase-Cas3-protein
MTNAGTNHHVLWAKFDNLWEPYPLLAHLLDTATAATCLFNHWLRKGLRDRLSTELGPDVEKILGFVAGIHDLGKANPYFQAQRKNKKEEWLTLRDAIQKAGFPLSNGTSAFFEETKEKRRHENITLSILGWEITQLLQVKDVWPQLAVIGHHGIFSTPRFLSDEDDLEDIEDIFDDNGWSPTHELLVSSLLQAVGLEKQPEISHISPASAILISGLVVLADRIASQSEMAADGLQALQKEELFFHQPEKWIANRKAFCREIIENTVGTYHPWESEAAGIRAVLGDYEPRFTQKAALNAGDGLFNVMETTGAGKTEAALLRHVKRKERLLFFLPTQATTNAIMERIGKIFDGTPNVASLAHGLAVTEDFYAHPVVPAQGSSDDANYKDNGGLYPTEFVRSAGTPRLLAPVCVGTIDQALLGALPSKFNHLRLLALANAHVVVDEVHTMDQYQSELMSGLLEWWSATDTPVTLLTATMPAWQREKFHLSYTGKEPHFKGVFPSLEDWSTPSKNTETSQENIPTEAFTIPISIDKIAHNEIVDSHVQWVIEQRKLFPQARIGVICNTVGRAQSIAEALSHESPIVLHSRMTAGHRKEAATKLERAIGKKGTANATLVIGTQAIEASLDIDLDLLRTELCPAPSLIQRAGRLWRRLDPQRKVRVPGMAGKELTIVVMDSPSSEQTLPYLRSQLYRVESWLKQRDRIEFPSDIQDFIDATTPGLQELFLRVSLPEDCGSAEERETLDDDYLDEVAAHVIKQRQAGTSRIDFAKHGKSRQVLAPDCVVEDFLQITSANNPEERATRLIDYPTLSAILCDPTGTIPGAWTDSVEKLIAISAKDRESLRRALRASISIPDSKKFLPITSRKIPLSEAKNLLSGYSAVHIQPDEYDLQSGLKGT
>CP026501.1|AUY59418.1|26619_27330_-|CRISPR-associated-protein
MPKATYWTHFPAHIALNKSLILGDFATENSKNKPHWDIDDPVFRHRAVMALFPEHQSDNARADSNILFRLEVLPGQEPYFFIQSSIKPSNHNLDKHIETRQVDLMSPEAGTPIEFRLSINAVRRKTIDAAKDAKRKIKTTCLPLDALSSDPTETSAGQWVKEKLSPALENIDIVRHGRQVLGANRNGKKTSTRTVQVDTIDGFAHVKDPAELQKILIHGIGRAKSYGCGMLTFRPI
>CP026501.1|AUY59419.1|27540_29154_+|Hypothetical-protein
MKSNVFKDFPFIKTNKGPMTVEEFFHSSHEKSLHLDLSIPGYEYGAIWRLLTSLTAVLMQRDPLFLKGKETSSELRFDPEFISQILDDLGSKISLTEGKNLFFQRTLLEGENPKDTARYVGPGKDPAWKLSPTAPSEKSQVYWNLEKLKPESLEAVDAIVALMVFSMYSFTGNSKYDGAKCLNGSPGIRFLGGGNTATEFIIEAQTPLLSLLKSIPSEWCEPGGLPAWLDRTGAESRKPNGEMHPLWRATWSSNTAACCWDGDTLIGVKIGGIPPEWYALEMGSKSEARKEWWDQRNTEDPFYFYKPDNGGALKAKRLDLSRDLTELAVEWVAEDLPTALVERVRGRALRVDFKKEDSLLFIRHQIGGNASSAMIRESVVSKARKQQWVFDPTGALQKEVRGKAVFILSLRNIVLSPFRRENKSDRDRGRRVLDSLASERPKMNETFWREIAPIYEEFILYFTEQVSGDETRKEVRAQAKKTLKELGKDAVRTAQKAFDMVLEPYLLQNPSQAYEVRRRIHSYLASTIAETNEGDQK
>CP026501.1|AUY59420.1|29150_29744_+|CRISPR-associated-protein-Cse2
MTTSRPKQSWTPLVAEFAQRKKDKEFRAKRSALRAGAGTYTEFRAYSYVLPFLGEKASAAQRTALLRCMAALAEYPDVVSSGEKATASSVGQWVNRVAFDGKQGQSEPDSMVASRIKYLHTQDLEEAISSLRRIMAFADRKNVTTKLNPYQFVELFWYWGNGFTDASTKHRLSVLRDFYSTKQKENTDPQSSSEGEK
>CP026501.1|AUY59421.1|29743_30811_+|CRISPR-associated-protein,-CT1975-family
MSRHLTIHVVASVPYSNLNRDDSGTPKNVRRGGVTCALLSSQSIKKGIRTKYEDASLDTSVRSGRIADDVLERAKVLAPEADTKALEKAVKKIIGTLTKAAEVNESEDESDRSIWLSAEELEAAAVSVVEQAEKKDFIEDGRTGSLAIAAFGRMFAAAPKKGTEAALSVSPAVTTHGVTIATDYFSTVDDIRERNRDTGATYLGVAQYTTGVFYRTVTIDKEQLRESWTGLDREDAKENLAALVNAIIYGLPRGKQRSTAPFVQPALILAEEQSYRCAYDFESPVQADAREGGYLKPTMEELKRQYDSARAFDADNFGETQVVSGTYPEVSEFFAGAKYADKNGFIDEVVAWIQR
>CP026501.1|AUY59422.1|31161_31515_+|CRISPR-associated-protein-Cas5
MTSIIQRTYLAEAEFIVEVASDTHGELLRDALRAPKFSTYLGRKAFAPAFPFFLGATADVDVLHRIPACDLSGTKRDTARVQIHHRSAGLQTSAEHINVPAVQERSDWLEKTKALFT
>CP026501.1|AUY59423.1|31589_32630_-|Insertion-element-protein:-transposase
MIMASHPYRNHCNVCGNLLKKNGKTSTGKTRYRCKGCGASSTATRSGTLHQRQMKDFITWLLGPTSRYNNDISRAQRRSMSWCWQVPVPQPEMLDNAYILVMDKGASFRPEHLLVAYNSSHVQGWKWVDKDNKTACMQVHDHFSQPSAAVIDGGQSTAQTIQAIWPGIPVRRCLSHIRKSVDQKTSQTPRTQPAIEIKELTDSLKNVYTSEQAKLWLARYARWEDRWKELLKHRTNVSKDNCSIDGYEWEWTHKELRTIRFMYRKLIKKEELFLPFYGSDIVAHNAILSRRDSQLGETISTDITNLFSAHRGINHDHGCRMVEWYLNSKTESPFIPERIISHDHWR
>CP026501.1|AUY59424.1|33037_33961_+|Phospholipase-D
MREKFALLLSIIMAIMLPVGNAAAAPVVHNPASTANRPVYAIAHRVLTTQGVDDAVAIGANALEIDFTAWGRGWWADHDGIPTSAGATAEEIFKHIADKRKQGANITFTWLDIKNPDYCRDARSVCSINALRDLARKYLEPAGVRVLYGFYKTVGGPAWKTITADLRDGEAVALSGPAQDVLNDFARSGNKILTKQKIADYGYYDINQGFGNCYGTWNRTCDQLRKSSEARDQGKLGKTFGWTIATGQDARVNDLLGKANVDGLIFGFKMTHFYRHPDTENSFKAIKRWVDKHSATHHLATVADNPW

Crispr_ID: CP026501_2

• CRISPR_ID: CP026501_2
• CRISPR_location: 27381-27452
• CRISPR_type: TypeI-E
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: cas6e,cas3,cas1,cas2,cas8e,cse2gr11,cas7,cas5

Consensus repeat of CP026501_2

Consensus_repeat	Method
TTCCTCGCGTCCTGCGGGGGTAG	CRISPRCasFinder

spacers of CP026501_2

>2.1|27404|26|CP026501|CRISPRCasFinder
TTCATGTTAGGTTTTCGGGTTGACTT

CRISPR arrays and Neighbor proteins around CP026501_2

CRISPR arrays

The CRISPR arrays of CP026501_2

>merge|CP026501|2|27381-27452|CRISPRCasFinder
TTCCTCGCGTCCTGCGGGGGTAGTTCATGTTAGGTTTTCGGGTTGACTTTTCCTCGCGTCCTGCGGGGGTAA

>CP026501|2|2|27381-27452|CRISPRCasFinder
TTCCTCGCGTCCTGCGGGGGTAG	TTCATGTTAGGTTTTCGGGTTGACTT
TTCCTCGCGTCCTGCGGGGGTAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP026501.1|AUY59425.1|34013_34880_-|ATP-binding-cytoplasmic-membrane-protein	unknown	unknown	gnl|CDD|224045
CP026501.1|AUY59412.1|21444_21570_-|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY59414.1|22029_22473_-|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY59424.1|33037_33961_+|Phospholipase-D	unknown	unknown	gnl|CDD|176518
CP026501.1|AUY59421.1|29743_30811_+|CRISPR-associated-protein,-CT1975-family	cas7	pfam09344_cas7_CAS-I-E	gnl|CDD|378153
CP026501.1|AUY59417.1|23911_26599_-|CRISPR-associated-helicase-Cas3-protein	cas3	COG1203_cas3_CAS-I	gnl|CDD|182031
CP026501.1|AUY59420.1|29150_29744_+|CRISPR-associated-protein-Cse2	cse2gr11	mkCas0096_cse2gr11_CAS-I-E	gnl|CDD|274193
CP026501.1|AUY59428.1|36988_38041_+|Iron-siderophore-binding-protein	unknown	unknown	gnl|CDD|238566
CP026501.1|AUY59427.1|35874_36942_-|FagA	unknown	unknown	gnl|CDD|182464
CP026501.1|AUY59410.1|20951_21056_-|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY59411.1|21192_21531_+|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY59409.1|19999_20155_-|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY59419.1|27540_29154_+|Hypothetical-protein	cas8e	cls000721_cas8e_CAS-I-E	gnl|CDD|378189
CP026501.1|AUY59423.1|31589_32630_-|Insertion-element-protein:-transposase	unknown	unknown	gnl|CDD|226202
CP026501.1|AUY59415.1|22583_22955_-|CRISPR-associated-protein	cas2	pfam09707_cas2_CAS-I-E	gnl|CDD|378244
CP026501.1|AUY59416.1|22955_23909_-|CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl|CDD|274693
CP026501.1|AUY59418.1|26619_27330_-|CRISPR-associated-protein	cas6e	cd09727_cas6e_CAS-I-E	gnl|CDD|187858
CP026501.1|AUY59413.1|21719_22019_-|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY59422.1|31161_31515_+|CRISPR-associated-protein-Cas5	cas5	cd09756_cas5_CAS-I-E	gnl|CDD|187776
CP026501.1|AUY59426.1|34888_35875_-|ABC-type-Fe3+-siderophore-transport-system,-permease-component	unknown	unknown	gnl|CDD|182463

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
CP026501.1|AUY59420.1|29150_29744_+|CRISPR-associated-protein-Cse2	cse2gr11	mkCas0096_cse2gr11_CAS-I-E	1.9e-73	241.2	0.5
CP026501.1|AUY59419.1|27540_29154_+|Hypothetical-protein	cas8e	cls000721_cas8e_CAS-I-E	3.8e-90	297.6	0.0
CP026501.1|AUY59415.1|22583_22955_-|CRISPR-associated-protein	cas2	pfam09707_cas2_CAS-I-E	2.7e-23	76.7	0.0
CP026501.1|AUY59417.1|23911_26599_-|CRISPR-associated-helicase-Cas3-protein	cas3	COG1203_cas3_CAS-I	1.2e-52	173.8	0.0
CP026501.1|AUY59416.1|22955_23909_-|CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	6.7e-68	223.4	0.0
CP026501.1|AUY59418.1|26619_27330_-|CRISPR-associated-protein	cas6e	cd09727_cas6e_CAS-I-E	7e-36	118.9	0.0
CP026501.1|AUY59421.1|29743_30811_+|CRISPR-associated-protein,-CT1975-family	cas7	pfam09344_cas7_CAS-I-E	4.4e-85	281.1	0.6
CP026501.1|AUY59422.1|31161_31515_+|CRISPR-associated-protein-Cas5	cas5	cd09756_cas5_CAS-I-E	5.8e-15	50.2	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP026501.1|AUY59418.1|26619_27330_-|CRISPR-associated-protein	gnl|CDD|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.17921e-34
CP026501.1|AUY59417.1|23911_26599_-|CRISPR-associated-helicase-Cas3-protein	gnl|CDD|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.61081e-51
CP026501.1|AUY59420.1|29150_29744_+|CRISPR-associated-protein-Cse2	gnl|CDD|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.93072e-07
CP026501.1|AUY59428.1|36988_38041_+|Iron-siderophore-binding-protein	gnl|CDD|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	5.68021e-81
CP026501.1|AUY59427.1|35874_36942_-|FagA	gnl|CDD|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	1.10582e-87
CP026501.1|AUY59424.1|33037_33961_+|Phospholipase-D	gnl|CDD|176518	cd08576, GDPD_like_SMaseD_PLD, Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline and lysophosphatidic acid (LPA), which is a multifunctional phospholipid involved in platelet aggregation, endothelial hyperpermeability, and pro-inflammatory responses. Loxosceles spider venoms' SMases D are the principal toxins responsible for dermonecrosis and complement dependent haemolysis induced by spider venom. Due to amino acid substitutions at the entrance to the active-site pocket, some members lack activity. The typical GDPD domain consists of a TIM barrel and a small insertion domain named as the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. Although proteins in this family contain a non-typical GDPD domain which lacks the GDPD-I, their catalytic mechanisms are based on Mg2+-dependent acid-base reactions similar to GDPD proteins. They might be divergent members of the GDPD family. Moreover, this family does not belong to phospholipase D (PLD) superfamily, since it lacks the conserved HKD sequence motif that characterizes the catalytic center of the PLD superfamily. It belongs to the superfamily of PLC-like phosphodiesterases.	7.16899e-90
CP026501.1|AUY59419.1|27540_29154_+|Hypothetical-protein	gnl|CDD|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	0.00762068
CP026501.1|AUY59423.1|31589_32630_-|Insertion-element-protein:-transposase	gnl|CDD|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00655325
CP026501.1|AUY59415.1|22583_22955_-|CRISPR-associated-protein	gnl|CDD|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	3.51848e-22
CP026501.1|AUY59416.1|22955_23909_-|CRISPR-associated-endonuclease-Cas1	gnl|CDD|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.18457e-72
CP026501.1|AUY59425.1|34013_34880_-|ATP-binding-cytoplasmic-membrane-protein	gnl|CDD|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	2.72604e-116
CP026501.1|AUY59421.1|29743_30811_+|CRISPR-associated-protein,-CT1975-family	gnl|CDD|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.30424e-81
CP026501.1|AUY59422.1|31161_31515_+|CRISPR-associated-protein-Cas5	gnl|CDD|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	4.36174e-13
CP026501.1|AUY59426.1|34888_35875_-|ABC-type-Fe3+-siderophore-transport-system,-permease-component	gnl|CDD|182463	PRK10440, PRK10440, iron-enterobactin ABC transporter permease.	7.09769e-96

Protein sequences

>CP026501.1|AUY59418.1|26619_27330_-|CRISPR-associated-protein
MPKATYWTHFPAHIALNKSLILGDFATENSKNKPHWDIDDPVFRHRAVMALFPEHQSDNARADSNILFRLEVLPGQEPYFFIQSSIKPSNHNLDKHIETRQVDLMSPEAGTPIEFRLSINAVRRKTIDAAKDAKRKIKTTCLPLDALSSDPTETSAGQWVKEKLSPALENIDIVRHGRQVLGANRNGKKTSTRTVQVDTIDGFAHVKDPAELQKILIHGIGRAKSYGCGMLTFRPI
>CP026501.1|AUY59417.1|23911_26599_-|CRISPR-associated-helicase-Cas3-protein
MTNAGTNHHVLWAKFDNLWEPYPLLAHLLDTATAATCLFNHWLRKGLRDRLSTELGPDVEKILGFVAGIHDLGKANPYFQAQRKNKKEEWLTLRDAIQKAGFPLSNGTSAFFEETKEKRRHENITLSILGWEITQLLQVKDVWPQLAVIGHHGIFSTPRFLSDEDDLEDIEDIFDDNGWSPTHELLVSSLLQAVGLEKQPEISHISPASAILISGLVVLADRIASQSEMAADGLQALQKEELFFHQPEKWIANRKAFCREIIENTVGTYHPWESEAAGIRAVLGDYEPRFTQKAALNAGDGLFNVMETTGAGKTEAALLRHVKRKERLLFFLPTQATTNAIMERIGKIFDGTPNVASLAHGLAVTEDFYAHPVVPAQGSSDDANYKDNGGLYPTEFVRSAGTPRLLAPVCVGTIDQALLGALPSKFNHLRLLALANAHVVVDEVHTMDQYQSELMSGLLEWWSATDTPVTLLTATMPAWQREKFHLSYTGKEPHFKGVFPSLEDWSTPSKNTETSQENIPTEAFTIPISIDKIAHNEIVDSHVQWVIEQRKLFPQARIGVICNTVGRAQSIAEALSHESPIVLHSRMTAGHRKEAATKLERAIGKKGTANATLVIGTQAIEASLDIDLDLLRTELCPAPSLIQRAGRLWRRLDPQRKVRVPGMAGKELTIVVMDSPSSEQTLPYLRSQLYRVESWLKQRDRIEFPSDIQDFIDATTPGLQELFLRVSLPEDCGSAEERETLDDDYLDEVAAHVIKQRQAGTSRIDFAKHGKSRQVLAPDCVVEDFLQITSANNPEERATRLIDYPTLSAILCDPTGTIPGAWTDSVEKLIAISAKDRESLRRALRASISIPDSKKFLPITSRKIPLSEAKNLLSGYSAVHIQPDEYDLQSGLKGT
>CP026501.1|AUY59416.1|22955_23909_-|CRISPR-associated-endonuclease-Cas1
MSYSNESLAFSTIPASEQIRLEDRVSFLYLEYCLIRQDRTGVIAVSRGDEKAPAELKDLPIKARIQLPVGGIAVLMLGPGTSISQPAATSCARAGVSVLFTGGGGVQAYSLSTPLTSSARWAIAQARLASNEAKQRTAARILYKRQLGIEEIEADSIAVMRGIEGRTIRNLYKRLSAKYKIKNFKRDTNATDPVNTNLNLGNSILYGCAASACAALGINPALGIIHRGDIRSLLFDLADLYKPTLTIPAAFKCANNDDDGSEFRRLVRSEIVKQDLLKNMIHIMMEILAPYLPERTDDRLIGGRNREVPGHTQYGGK
>CP026501.1|AUY59415.1|22583_22955_-|CRISPR-associated-protein
MFTVIQGHNLPNHLNGYLSRFLSEVDAGLYVGVLSRAVMENLWEKCQSVDLAGSLTLIHPQYDAEQGFRIRTTGKQRRPVVDLDGLFLSARGLIEDVRFADPLDEADAIIPDEVLEDFCPESE
>CP026501.1|AUY59414.1|22029_22473_-|Hypothetical-protein
MAAKALLEHQLFSAYTEVVPVAKKRFSPLLTFLRVCGGSSPEAVFSGEKTFFPPYESGRDILKAWLEGEPSPLKAALISPEAVIVTRTGRRIRSRVKGPDGKFVTIEIVLGPAKDASQYDFRIATLYPISGNGVSPITDDGKISRAR
>CP026501.1|AUY59413.1|21719_22019_-|Hypothetical-protein
MDFYDAITRIEATPSVSVRYGDSGVQDFELEEFLAGLVQEKAVVSDVEAKREFLSWFDEDDEWLDPDWDAPMVEQTVRDLHVFAGLEPKVEIHIPMPPA
>CP026501.1|AUY59412.1|21444_21570_-|Hypothetical-protein
MSGFVVQAVSFGLLAFGESAVVAGIVEGDGVVWVFTFLYSW
>CP026501.1|AUY59411.1|21192_21531_+|Hypothetical-protein
MRLCIYGNVDDGFSLHGRLGNAIGGSTLRSQIFERFQRTRVILANCRSALYLYCPANYRKLQLLAIAGRTSHECAFPTVRLVLELPAIKKCKDPHHTISLDDSGDYRRLSES
>CP026501.1|AUY59410.1|20951_21056_-|Hypothetical-protein
MGSVVLGDDDGGTDVLVVVGGTGGISGSSGSSWQ
>CP026501.1|AUY59409.1|19999_20155_-|Hypothetical-protein
MDKVVHFFPTWVFVRELLKKCRSFASKIQRLEIGEVNNTRVIIHSVDNSCG
>CP026501.1|AUY59419.1|27540_29154_+|Hypothetical-protein
MKSNVFKDFPFIKTNKGPMTVEEFFHSSHEKSLHLDLSIPGYEYGAIWRLLTSLTAVLMQRDPLFLKGKETSSELRFDPEFISQILDDLGSKISLTEGKNLFFQRTLLEGENPKDTARYVGPGKDPAWKLSPTAPSEKSQVYWNLEKLKPESLEAVDAIVALMVFSMYSFTGNSKYDGAKCLNGSPGIRFLGGGNTATEFIIEAQTPLLSLLKSIPSEWCEPGGLPAWLDRTGAESRKPNGEMHPLWRATWSSNTAACCWDGDTLIGVKIGGIPPEWYALEMGSKSEARKEWWDQRNTEDPFYFYKPDNGGALKAKRLDLSRDLTELAVEWVAEDLPTALVERVRGRALRVDFKKEDSLLFIRHQIGGNASSAMIRESVVSKARKQQWVFDPTGALQKEVRGKAVFILSLRNIVLSPFRRENKSDRDRGRRVLDSLASERPKMNETFWREIAPIYEEFILYFTEQVSGDETRKEVRAQAKKTLKELGKDAVRTAQKAFDMVLEPYLLQNPSQAYEVRRRIHSYLASTIAETNEGDQK
>CP026501.1|AUY59420.1|29150_29744_+|CRISPR-associated-protein-Cse2
MTTSRPKQSWTPLVAEFAQRKKDKEFRAKRSALRAGAGTYTEFRAYSYVLPFLGEKASAAQRTALLRCMAALAEYPDVVSSGEKATASSVGQWVNRVAFDGKQGQSEPDSMVASRIKYLHTQDLEEAISSLRRIMAFADRKNVTTKLNPYQFVELFWYWGNGFTDASTKHRLSVLRDFYSTKQKENTDPQSSSEGEK
>CP026501.1|AUY59421.1|29743_30811_+|CRISPR-associated-protein,-CT1975-family
MSRHLTIHVVASVPYSNLNRDDSGTPKNVRRGGVTCALLSSQSIKKGIRTKYEDASLDTSVRSGRIADDVLERAKVLAPEADTKALEKAVKKIIGTLTKAAEVNESEDESDRSIWLSAEELEAAAVSVVEQAEKKDFIEDGRTGSLAIAAFGRMFAAAPKKGTEAALSVSPAVTTHGVTIATDYFSTVDDIRERNRDTGATYLGVAQYTTGVFYRTVTIDKEQLRESWTGLDREDAKENLAALVNAIIYGLPRGKQRSTAPFVQPALILAEEQSYRCAYDFESPVQADAREGGYLKPTMEELKRQYDSARAFDADNFGETQVVSGTYPEVSEFFAGAKYADKNGFIDEVVAWIQR
>CP026501.1|AUY59422.1|31161_31515_+|CRISPR-associated-protein-Cas5
MTSIIQRTYLAEAEFIVEVASDTHGELLRDALRAPKFSTYLGRKAFAPAFPFFLGATADVDVLHRIPACDLSGTKRDTARVQIHHRSAGLQTSAEHINVPAVQERSDWLEKTKALFT
>CP026501.1|AUY59423.1|31589_32630_-|Insertion-element-protein:-transposase
MIMASHPYRNHCNVCGNLLKKNGKTSTGKTRYRCKGCGASSTATRSGTLHQRQMKDFITWLLGPTSRYNNDISRAQRRSMSWCWQVPVPQPEMLDNAYILVMDKGASFRPEHLLVAYNSSHVQGWKWVDKDNKTACMQVHDHFSQPSAAVIDGGQSTAQTIQAIWPGIPVRRCLSHIRKSVDQKTSQTPRTQPAIEIKELTDSLKNVYTSEQAKLWLARYARWEDRWKELLKHRTNVSKDNCSIDGYEWEWTHKELRTIRFMYRKLIKKEELFLPFYGSDIVAHNAILSRRDSQLGETISTDITNLFSAHRGINHDHGCRMVEWYLNSKTESPFIPERIISHDHWR
>CP026501.1|AUY59424.1|33037_33961_+|Phospholipase-D
MREKFALLLSIIMAIMLPVGNAAAAPVVHNPASTANRPVYAIAHRVLTTQGVDDAVAIGANALEIDFTAWGRGWWADHDGIPTSAGATAEEIFKHIADKRKQGANITFTWLDIKNPDYCRDARSVCSINALRDLARKYLEPAGVRVLYGFYKTVGGPAWKTITADLRDGEAVALSGPAQDVLNDFARSGNKILTKQKIADYGYYDINQGFGNCYGTWNRTCDQLRKSSEARDQGKLGKTFGWTIATGQDARVNDLLGKANVDGLIFGFKMTHFYRHPDTENSFKAIKRWVDKHSATHHLATVADNPW
>CP026501.1|AUY59425.1|34013_34880_-|ATP-binding-cytoplasmic-membrane-protein
MHTPKTTSTDLPTTAGISTDHMSALRTENVTLSWDKHVVSTDLSVDIPTGKFTAIIGPNGCGKSTLLKSCARILAPDTGSIYLNQHNLTHLHTKEIAKQLAFLPQSTITPTDITVEELVRRGRFPHHNWLHQWTAEDTRAVDAALNAASVKELTHKRVTDLSGGQRQRVWLAMVLAQNTPTVLLDEPTTFLDIAHQYQLLELARSLTTQLNRTVVAVLHDLQQAVRYADHLIVMKNGSIVATGSPQEVISAELISEVFNITVRTMLIDDQLIVIPTELPVPNVAMMQG
>CP026501.1|AUY59426.1|34888_35875_-|ABC-type-Fe3+-siderophore-transport-system,-permease-component
MTHRRSWYTALILTLLLAVSAAVAVSLPGAGITTAKVWSVFQGDDSSLAHTIVFSWRAPRIVTALFVGAALGIAGSLFQALTRNPLGSPDIIGFNTGAYTGVLLTMMAGMTSFASVAFGALAGGLATALAVMAFSVRVRIDGLRIILVGLGVSAMLSAFNRWLITRGDLNTALSAASWGAGTLNGIRWAAATPAVIALGIIVALALLLGSRIDILNLGDDTATALGLPVNPSKFVLLIVGVLLIATTTAIAGPISFIALASPHIAQRITASPRTPLLVSALTGATLLLVADIIAQRAFAPVQLPVGLVTVVIGGIYLLSLIASASRRA
>CP026501.1|AUY59427.1|35874_36942_-|FagA
MVSTASSNPSPIRGFLRKSQPNVQRTRRSLLVVVLLLAVLLVVGSIASVMIGARLIPLPEILNALFHPDSTNVSSTIVWDRRVPRTLLAIVAGMSLGLAGTLSQTLTRNPLADTGALGINSGAAFAIVVGIALFGASSPWAFLALALLGACGAAAVVYSVGTHRSATADPVRLVLSGVALSAILSGIGEGLSLVNPQAFDRLKSWMVGSVDVGTLMPLGIAGVGLTCGIVLTIACAHGLNALALGDAMATSIGASTARIRFISFIAVVILAASATAAAGVIIFLGLMVPHVARWIVGPDLPRVLITSLLLGPLVLVVADIVGRLIVPGEFPAGVVVSFIGAPFLIAYAQSRKGDM
>CP026501.1|AUY59428.1|36988_38041_+|Iron-siderophore-binding-protein
MKDTQSLNTWSHRIAVMLALFLSISLIFSLAACSSEEKQSKDAGQGNADVATGGAHFSTADAETAKLGSDAAPGEFPRTVKHALGETEIKEQPKRVVVLDTGELDSVLSLGITPVGMVTTKGSNPVPSYLADKVKDVKSVGTINEINVEEIAALQPDLILGSKLRADKIYAQLAEVAPTVFSIRPGFPWKENFLLIGDALGKEKEAEAKLNEYTEKVETIKASVPADTTVSLLRFMPKRIRLYGNKSLLGVILKDAGLARPENQNIDELATEISPETIDQAEGSVIFYSSYGKPDATGQDAIVNGAAWKNLNAVKNGQAHEVNDDVWFLGLGPTGAMQIVEELKELLPKK

Crispr_ID: CP026501_3

• CRISPR_ID: CP026501_3
• CRISPR_location: 1842855-1842944
• CRISPR_type: Orphan
• Repeat_type: I-C,I-E,II-B
• Spacer_info: 1 spacers
• Cas_protein_info: DinG

Consensus repeat of CP026501_3

Consensus_repeat	Method
CCTTTTCTCCGCGCACGCGGAGGTAGTTC	CRISPRCasFinder

spacers of CP026501_3

>3.1|1842884|32|CP026501|CRISPRCasFinder
CGGCGGCCCTTATGGTGGGCATACGTCGGGCA

CRISPR arrays and Neighbor proteins around CP026501_3

CRISPR arrays

The CRISPR arrays of CP026501_3

>merge|CP026501|3|1842855-1842944|CRISPRCasFinder
CCTTTTCTCCGCGCACGCGGAGGTAGTTCCGGCGGCCCTTATGGTGGGCATACGTCGGGCACCTTTTCTCCGCGCACGCGGAGGTAGTTC

>CP026501|3|3|1842855-1842944|CRISPRCasFinder
CCTTTTCTCCGCGCACGCGGAGGTAGTTC	CGGCGGCCCTTATGGTGGGCATACGTCGGGCA
CCTTTTCTCCGCGCACGCGGAGGTAGTTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP026501.1|AUY61120.1|1843994_1844240_+|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY61119.1|1843712_1843952_+|Hypothetical-protein	unknown	unknown	gnl|CDD|376885
CP026501.1|AUY61112.1|1837354_1838713_+|Nicotinate-phosphoribosyl-transferase	unknown	unknown	gnl|CDD|236426
CP026501.1|AUY61121.1|1844344_1844464_-|Hypothetical-protein	unknown	unknown	gnl|CDD|239737
CP026501.1|AUY61108.1|1834345_1835239_-|Glutamate-racemase	unknown	unknown	gnl|CDD|234851
CP026501.1|AUY61116.1|1842989_1843259_+|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY61111.1|1836848_1837229_-|ATP-dependent-Clp-protease-adapter-protein-ClpS	unknown	unknown	gnl|CDD|178809
CP026501.1|AUY61124.1|1846031_1846175_-|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY61117.1|1843236_1843455_+|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY61114.1|1840783_1841281_+|Ribosomal-protein-alanine-acetyltransferase	unknown	unknown	gnl|CDD|379112
CP026501.1|AUY61107.1|1833505_1834303_-|Metal-dependent-hydrolase	unknown	unknown	gnl|CDD|293802
CP026501.1|AUY61125.1|1846414_1846552_-|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY61115.1|1841277_1842561_-|Phosphoserine-phosphatase	unknown	unknown	gnl|CDD|319803
CP026501.1|AUY61110.1|1836217_1836754_-|Hypothetical-protein	unknown	unknown	gnl|CDD|378185
CP026501.1|AUY61122.1|1844681_1844819_+|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY61109.1|1835312_1836131_-|Rhomboid-family-protein	unknown	unknown	gnl|CDD|366759
CP026501.1|AUY61123.1|1845029_1845869_-|Hypothetical-protein	unknown	unknown	unknown
CP026501.1|AUY61106.1|1832732_1833476_-|Ribonuclease-PH	unknown	unknown	gnl|CDD|178914
CP026501.1|AUY61113.1|1838765_1840760_+|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl|CDD|224120
CP026501.1|AUY61118.1|1843451_1843643_+|Hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
CP026501.1|AUY61113.1|1838765_1840760_+|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	4.6e-141	465.9	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP026501.1|AUY61119.1|1843712_1843952_+|Hypothetical-protein	gnl|CDD|376885	pfam02661, Fic, Fic/DOC family. This family consists of the Fic (filamentation induced by cAMP) protein and doc (death on curing). The Fic protein is involved in cell division and is suggested to be involved in the synthesis of PAB or folate, indicating that the Fic protein and cAMP are involved in a regulatory mechanism of cell division via folate metabolism. This family contains a central conserved motif HPFXXGNG in most members. The exact molecular function of these proteins is uncertain. P1 lysogens of Escherichia coli carry the prophage as a stable low copy number plasmid. The frequency with which viable cells cured of prophage are produced is about 10(-5) per cell per generation. A significant part of this remarkable stability can be attributed to a plasmid-encoded mechanism that causes death of cells that have lost P1. In other words, the lysogenic cells appear to be addicted to the presence of the prophage. The plasmid withdrawal response depends on a gene named doc (death on curing) that is represented by this family. Doc induces a reversible growth arrest of E. coli cells by targetting the protein synthesis machinery. Doc hosts the C-terminal domain of its antitoxin partner Phd (prevents host death) through fold complementation, a domain that is intrinsically disordered in solution but that folds into an alpha-helix on binding to Doc.This domain forms complexes with Phd antitoxins containing pfam02604.	1.8854e-12
CP026501.1|AUY61112.1|1837354_1838713_+|Nicotinate-phosphoribosyl-transferase	gnl|CDD|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
CP026501.1|AUY61121.1|1844344_1844464_-|Hypothetical-protein	gnl|CDD|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.86616e-06
CP026501.1|AUY61108.1|1834345_1835239_-|Glutamate-racemase	gnl|CDD|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	1.87386e-132
CP026501.1|AUY61111.1|1836848_1837229_-|ATP-dependent-Clp-protease-adapter-protein-ClpS	gnl|CDD|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	1.33955e-35
CP026501.1|AUY61114.1|1840783_1841281_+|Ribosomal-protein-alanine-acetyltransferase	gnl|CDD|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.40055e-23
CP026501.1|AUY61107.1|1833505_1834303_-|Metal-dependent-hydrolase	gnl|CDD|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	6.56114e-76
CP026501.1|AUY61115.1|1841277_1842561_-|Phosphoserine-phosphatase	gnl|CDD|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.94316e-95
CP026501.1|AUY61110.1|1836217_1836754_-|Hypothetical-protein	gnl|CDD|378185	pfam09438, DUF2017, Domain of unknown function (DUF2017). This is an alpha-helical domain found in gene neighborhoods that contain genes encoding ubiquitin, cysteine synthases and JAB peptidases.	1.38837e-72
CP026501.1|AUY61109.1|1835312_1836131_-|Rhomboid-family-protein	gnl|CDD|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	3.12334e-23
CP026501.1|AUY61106.1|1832732_1833476_-|Ribonuclease-PH	gnl|CDD|178914	PRK00173, rph, ribonuclease PH; Reviewed.	6.63779e-164
CP026501.1|AUY61113.1|1838765_1840760_+|ATP-dependent-DNA-helicase	gnl|CDD|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	5.49835e-153

Protein sequences

>CP026501.1|AUY61115.1|1841277_1842561_-|Phosphoserine-phosphatase
MIELDQPQVTVSLRPELTPAVITISGQDRQGVSAAAFRVLAANGVQILDVEQSQFRGFLGLAVFAGVEASKVEILEVGLKETLKTYGQNVKIELQEVAQSSRPRSTHEVVILGNPVEAHDLSRVAQTLANFDANIDTIRGISDYPVTGLELKITVAKREPGAAMPLRKALAELTAELGVDIAIERAGLLRRSKRLICFDCDSTLITGEVIEMLAAHAGREKEVAEVTERAMRGELDFEESLRERVKALAGLDASVIGEVADSIELTPGGRTTIRTLKRLGYKTAVVSGGFIQVLEELAEDLGLDYVRANTLEVVDGKLTGRVIGRIVDRAAKAEFLEEFARESGIEMHQTVAVGDGANDIDMISAAGLGIAFNAKPALREIADTSVNSPFLDEVLHMLGITRADIDAADDSEGKIHRVPLPQQKNEY
>CP026501.1|AUY61114.1|1840783_1841281_+|Ribosomal-protein-alanine-acetyltransferase
MTAHVPTLSNDSVKLRPLLLSDAHDLTATCRDPLTQKYTTVPANYTFAMAEEFIKTEHDNLRWVITVPTSDRFCGQIELRSLATEHNAMNVGYMTAPWARGQGLMTSALLLAVDYAFSRSVRRIELQADSQNKASQRVAEKAGFILMDSSQDTMVYSLLADEYHS
>CP026501.1|AUY61113.1|1838765_1840760_+|ATP-dependent-DNA-helicase
MLDATSTLCPMSDSPLALSTDELLDAAVAALGGSRRNGQVSMANAVTKALESERHLAVQAGTGTGKSLAYLVPALRHAQATDSTIIVSTATIALQRQLVERDLPRLADALEPHMSRRPTFAIMKGRANYVCMNKIAAAEEPEDALIDEEDLSWLGKHVARIYEWANETEVGDRDSLDPGVPDLAWRQVSVSAQECIGASRCPHGEECFAELARKKAHDVDVIVTNHALLAIDALSDVNVLPEHEVVIVDEAHELDGRITAVATNEIGVTALTMSSRRAGKLGAGEKDQKLIDIAKEWEDAMLAIEPGRLTSLPDSLKQQTVALRDAIWSLREHISRVPEGEAANDPERHAERMSLSNHLNDQHDSVIRVLSVFEEEDAASQEDVVWVLHDERRGVMIKVAPLSIAGLLHTRLFSENTVVLASATLNIGGNFNAMAASWGLPKGSWDSLDAGTPFNPATSGILYTPNSLPDPGRDGLSPEVLDEIYELIMAAGGRTLGLFSSRRAAQQATDAMRTRLPFDVLCQGDDTTGALVEKFSKQENTCLFGTLSLWQGVDVPGRSCSLVIIDRIPFPRPDDPLLQARKDAADADGRNGFMEVAATHAALLIAQGAGRLLRSVTDRGVVAILDRRIVTKRYGAFFIRSLPAFWRTNDPQVVRGALSRLVAR
>CP026501.1|AUY61112.1|1837354_1838713_+|Nicotinate-phosphoribosyl-transferase
MSCASALSVFKAKLVCVTEFESTALLTDMYELTMLQSALADGTASRSCTFEVFSRRLPNERRYGVVAGTARVLEAIKHYRFTEEQLASLTFLDATTIDFLRSYKFQGQIDGYREGELYFPSSPILTIRGTFAECVILETLILSIMNADSAVASAAARMVTAADGRPIFEMGSRRTHEYAAVTAARAAYLAGFVGTSNLEAVHRYGIPGSGTAAHAWTLLHVNDDGTPNESAAFQSQINVLGVGTTLLVDTYDIAKGVKTAMEVAGPQLGAVRIDSGDLGVMTRKVRQELDSLGAHNTGIVVSSDLDEYAIAGLRGNPVDAFGVGTSVVTGSGAPTAGMVYKLVEVDGHPVAKRSRGKAMVGGTKRAIRTHRATGTAVEEIVFPYDHDTPQIGQLNSYELTIPLMRNGVAVDNLPTLEESRAYLAEQLITLPWEGLALSKDEPVLSTRFIGFK
>CP026501.1|AUY61111.1|1836848_1837229_-|ATP-dependent-Clp-protease-adapter-protein-ClpS
MQVKQEDVTHSLNELPSVVLAPTMDVVVSSPMATPELDEALSVDVASSENLPWMCIVWDDPVNLMSYVTYVFQTILGYSKRRAIELMMQVHTEGKAVVSSGERDKVEGDVKKLHTAGLWATMQQGG
>CP026501.1|AUY61110.1|1836217_1836754_-|Hypothetical-protein
MQPWKKKKGLMRGVHFACVFEPMEREVLGNLASTVSEALIHRAQSAPKDELAELTGMPSGHKEAPKDPALARLLPDFEKEGDEEFEGDNSLLRCLHETDITRAKIEHLYVLGQALGPDGGVHVDITETEAHAWVAALNDIRLYVASGEVFGEDAEQDRESLVEWLAYNQESLLNAMMG
>CP026501.1|AUY61109.1|1835312_1836131_-|Rhomboid-family-protein
MSLRYFFTRLCFIMTNRFNPYAQSDKKTYGGVSTSGGYLPHEYGTQYLPTSDYPVNRAVQRGMKRTSLRSMGRKRLADATILALGYVVVIWAVHIVNTVFFGGTLAQELGVHPLDGSSIWHIFTSPLVHGSYMHISANTLPGLIFVFLIGLSGRRPFWEVTMITAVVGGMGTWIFGGIGTTHIGASGLIYGWLAYLVVRGIFNKSFSQVVLGMVLAFMYGGLIWGVLPGDVGVSWQAHLFGAIGGLIAGATITSDDPPALKARREQQALHRA
>CP026501.1|AUY61108.1|1834345_1835239_-|Glutamate-racemase
MAYVKKDLGADSLHPEAPSVKPSVVYEGTIDASSPIGIFDSGVGGLTVARAIMEQLPQESVIYIGDTANSPYGSKPIAQVRELSMRIGDELVARGCKMIVIACNTATSAALRDLRERYSIPVVGVILPAVRRAVAATRNGKIGVLGTQGTIASGAYQELFAASPGVEVYAQACPSFVSFVERGITSGRQILGVAQGYTEGLQSAGVDTLVLGCTHYPLLTGVIQLAVGDNVTLISSSEECVKDVLKVLSRNDMLAEATADKSPSRSFESTGDPALFEQLAMRFLGPHVTYVEKLRQV
>CP026501.1|AUY61107.1|1833505_1834303_-|Metal-dependent-hydrolase
MIRNRGTVKNMKLTILGSSGSLGAPDNAASGYLIQMDNAPSILMDMGPGVLAQLERAQNPSDAHVVFSHLHADHCVDFPSLLVWRRYHPTAAAKGRNLCFGPTDTPVRLGRLSADSVDNIDDMSDTFAFTPWQNAKEELVGTVSITPYSVVHPIESFALRVEHKRSGKVVAYSGDSSYTENLIECARDADVFLCEATWGETSEGKVPNMHMSGEEAGRIARIAGAKRLILVHIPPWGNAKAALEKARSEFDGPVDISYQGMEIHI
>CP026501.1|AUY61106.1|1832732_1833476_-|Ribonuclease-PH
MVDMTTSNFKRADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGWLTAEYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENTINIDCDVLQADGGTRTASITGAYVALADAISHLQKQGVVPGNPLKDPVAAVSVGVIDGAVCLDLPYEEDSRADVDMNVIMQNGRFVEIQGTGEHNTFDRDELARILDFAEKGCTELVAAQKAALGIA
>CP026501.1|AUY61116.1|1842989_1843259_+|Hypothetical-protein
MAQQIRDQKILSSAVEEIFLSLSDRQTAEERAGAAMQKILDLGKPHSFLTSSFSLSTKEVSAMLKASKNSDENRFEQAETSTDDHDESH
>CP026501.1|AUY61117.1|1843236_1843455_+|Hypothetical-protein
MTMMNPTERINKDQLRQIRNDLASAEIEGQSRAPEDEKILAAYYLGEVSEQESFESLLKAAGVHPPLPINKS
>CP026501.1|AUY61118.1|1843451_1843643_+|Hypothetical-protein
MTSINRDLKKRRWDELLYPGTQVLKNLYGIRDEFLAKKVIRAAALTARKNIPSTGFGKATISE
>CP026501.1|AUY61119.1|1843712_1843952_+|Hypothetical-protein
MAKDHSRFESWQEIPELLSRVDMLIEWTDWQALSYNDKVDTLADIHAELNRIHPFREGNGRTTRIVMENLAKIHGIAVD
>CP026501.1|AUY61120.1|1843994_1844240_+|Hypothetical-protein
MQFPPLSEDSVLPLRLIWDQISAPLPNEQQDQKDFHKAQEMVKDIMGGTGIDFSLESSSQISYELNQNNQVDSFDKHSPEL
>CP026501.1|AUY61121.1|1844344_1844464_-|Hypothetical-protein
MLAILGAFAEFERTIIRERQAEGIAIAKIKDCIGEDREL
>CP026501.1|AUY61122.1|1844681_1844819_+|Hypothetical-protein
MPDRKILSEVEPTRVFLAADPIFDLWKRLEDKSLDGHGIVAWFKV
>CP026501.1|AUY61123.1|1845029_1845869_-|Hypothetical-protein
MIEPFPPLENLYKKLKDKDLVAYVDETYASPDGQSHNGFYTICAVLYESCEIKNARNDFVRIAAGNYWHSTQALQTVDGQAKFSAMVNELSRFRDPIVVTVKLNGNFQKESDQLHARSEALEKLAVTLSLAYSHRIKGLIVEKNRRQRLDNLDRTVIAKLYRLGTVPKSLQMLHCSPSSEPLLWTPDITAMAWRRAITHTDASSREFVKLGSQCHIVSIDSERTIHEIPKIPTGNALLDEIYGNSSFLESLRHREMHRLVQNENLPQVIIKEKENQKEL
>CP026501.1|AUY61124.1|1846031_1846175_-|Hypothetical-protein
MTSCCIYGKLLFFVGKVREEELARESKIPLLTNYVVRANGCIVNHPV
>CP026501.1|AUY61125.1|1846414_1846552_-|Hypothetical-protein
MRNENVQVFPGVIPRREAIRNTYRRLPEKLWGYESVTAALVKESA

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026501_1	1.2|22447|28|CP026501|PILER-CR	22447-22474	28	NZ_CP019064	Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence	112232-112259	6	0.786
CP026501_1	1.8|22506|31|CP026501|CRT	22506-22536	31	NZ_CP027853	Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence	223320-223350	6	0.806
CP026501_1	1.1|22386|28|CP026501|PILER-CR	22386-22413	28	KU160495	Exiguobacterium phage vB_EauS-123, complete genome	10947-10974	7	0.75
CP026501_1	1.2|22447|28|CP026501|PILER-CR	22447-22474	28	NZ_AP019800	Vibrio rotiferianus strain AM7 plasmid pAM7, complete sequence	14661-14688	7	0.75
CP026501_1	1.2|22447|28|CP026501|PILER-CR	22447-22474	28	GQ866233	Aggregatibacter phage S1249, complete sequence	27861-27888	7	0.75
CP026501_1	1.5|22505|32|CP026501|CRISPRCasFinder	22505-22536	32	NZ_CP027853	Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence	223319-223350	7	0.781
CP026501_1	1.7|22445|31|CP026501|CRT	22445-22475	31	NZ_CP019064	Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence	112232-112262	7	0.774
CP026501_1	1.7|22445|31|CP026501|CRT	22445-22475	31	NC_048639	Pseudomonas phage ZC08, complete genome	14894-14924	8	0.742
CP026501_1	1.7|22445|31|CP026501|CRT	22445-22475	31	NC_048638	Pseudomonas phage ZC03, complete genome	14836-14866	8	0.742
CP026501_1	1.4|22444|32|CP026501|CRISPRCasFinder	22444-22475	32	NC_048639	Pseudomonas phage ZC08, complete genome	14894-14925	9	0.719
CP026501_1	1.4|22444|32|CP026501|CRISPRCasFinder	22444-22475	32	NC_048638	Pseudomonas phage ZC03, complete genome	14836-14867	9	0.719
CP026501_1	1.6|22384|31|CP026501|CRT	22384-22414	31	KU160495	Exiguobacterium phage vB_EauS-123, complete genome	10947-10977	9	0.71
CP026501_1	1.7|22445|31|CP026501|CRT	22445-22475	31	GQ866233	Aggregatibacter phage S1249, complete sequence	27861-27891	9	0.71
CP026501_1	1.3|22383|32|CP026501|CRISPRCasFinder	22383-22414	32	KU160495	Exiguobacterium phage vB_EauS-123, complete genome	10946-10977	10	0.688
CP026501_1	1.4|22444|32|CP026501|CRISPRCasFinder	22444-22475	32	GQ866233	Aggregatibacter phage S1249, complete sequence	27860-27891	10	0.688

1. spacer 1.2|22447|28|CP026501|PILER-CR matches to NZ_CP019064 (Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.786

tggtgttccaataatgcttttgctgcca	CRISPR spacer
ttatgttccaataatgcctttgctgaag	Protospacer
* .**************.*******  .

2. spacer 1.8|22506|31|CP026501|CRT matches to NZ_CP027853 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence) position: , mismatch: 6, identity: 0.806

gcctgattcactgtcagcccgtaaagctcac	CRISPR spacer
ggctgatttactggcagcccgtaaagcactg	Protospacer
* ******.**** ************* *  

3. spacer 1.1|22386|28|CP026501|PILER-CR matches to KU160495 (Exiguobacterium phage vB_EauS-123, complete genome) position: , mismatch: 7, identity: 0.75

cagcaacggtgagaatctttttttcgcg	CRISPR spacer
aagcaaccgtgagaatatttttttgaaa	Protospacer
 ****** ******** ******* . .

4. spacer 1.2|22447|28|CP026501|PILER-CR matches to NZ_AP019800 (Vibrio rotiferianus strain AM7 plasmid pAM7, complete sequence) position: , mismatch: 7, identity: 0.75

tggtgttccaataatgcttttgctgcca	CRISPR spacer
tctgattccaataatgctttttctgcat	Protospacer
*   .**************** ****  

5. spacer 1.2|22447|28|CP026501|PILER-CR matches to GQ866233 (Aggregatibacter phage S1249, complete sequence) position: , mismatch: 7, identity: 0.75

tggtgttccaataatgcttttgctgcca	CRISPR spacer
cggtgtctcaataatgcttttgctaatt	Protospacer
.*****..****************. . 

6. spacer 1.5|22505|32|CP026501|CRISPRCasFinder matches to NZ_CP027853 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence) position: , mismatch: 7, identity: 0.781

tgcctgattcactgtcagcccgtaaagctcac	CRISPR spacer
aggctgatttactggcagcccgtaaagcactg	Protospacer
 * ******.**** ************* *  

7. spacer 1.7|22445|31|CP026501|CRT matches to NZ_CP019064 (Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.774

tggtgttccaataatgcttttgctgccaact	CRISPR spacer
ttatgttccaataatgcctttgctgaagatt	Protospacer
* .**************.*******  .*.*

8. spacer 1.7|22445|31|CP026501|CRT matches to NC_048639 (Pseudomonas phage ZC08, complete genome) position: , mismatch: 8, identity: 0.742

tggtgttccaataatgcttttgctgccaact	CRISPR spacer
aagaactccaataatgactttgctgccaacc	Protospacer
 .* ..********** .************.

9. spacer 1.7|22445|31|CP026501|CRT matches to NC_048638 (Pseudomonas phage ZC03, complete genome) position: , mismatch: 8, identity: 0.742

tggtgttccaataatgcttttgctgccaact	CRISPR spacer
aagaactccaataatgactttgctgccaacc	Protospacer
 .* ..********** .************.

10. spacer 1.4|22444|32|CP026501|CRISPRCasFinder matches to NC_048639 (Pseudomonas phage ZC08, complete genome) position: , mismatch: 9, identity: 0.719

ttggtgttccaataatgcttttgctgccaact	CRISPR spacer
gaagaactccaataatgactttgctgccaacc	Protospacer
  .* ..********** .************.

11. spacer 1.4|22444|32|CP026501|CRISPRCasFinder matches to NC_048638 (Pseudomonas phage ZC03, complete genome) position: , mismatch: 9, identity: 0.719

ttggtgttccaataatgcttttgctgccaact	CRISPR spacer
gaagaactccaataatgactttgctgccaacc	Protospacer
  .* ..********** .************.

12. spacer 1.6|22384|31|CP026501|CRT matches to KU160495 (Exiguobacterium phage vB_EauS-123, complete genome) position: , mismatch: 9, identity: 0.71

cagcaacggtgagaatctttttttcgcgacg	CRISPR spacer
aagcaaccgtgagaatatttttttgaaaatc	Protospacer
 ****** ******** ******* . .*. 

13. spacer 1.7|22445|31|CP026501|CRT matches to GQ866233 (Aggregatibacter phage S1249, complete sequence) position: , mismatch: 9, identity: 0.71

tggtgttccaataatgcttttgctgccaact	CRISPR spacer
cggtgtctcaataatgcttttgctaattccg	Protospacer
.*****..****************. .  * 

14. spacer 1.3|22383|32|CP026501|CRISPRCasFinder matches to KU160495 (Exiguobacterium phage vB_EauS-123, complete genome) position: , mismatch: 10, identity: 0.688

tcagcaacggtgagaatctttttttcgcgacg	CRISPR spacer
aaagcaaccgtgagaatatttttttgaaaatc	Protospacer
  ****** ******** ******* . .*. 

15. spacer 1.4|22444|32|CP026501|CRISPRCasFinder matches to GQ866233 (Aggregatibacter phage S1249, complete sequence) position: , mismatch: 10, identity: 0.688

ttggtgttccaataatgcttttgctgccaact	CRISPR spacer
acggtgtctcaataatgcttttgctaattccg	Protospacer
 .*****..****************. .  * 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1985342 : 1993803	11	Pandoravirus(33.33%)	holin	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>CP026501|1985342:1993803|DBSCAN-SWA
TTTGTTTTCGCATGATACGGCTGGAGAAACGGTTGAGGATCGGCATCGTGATGTGGTGATCGTGGGTGGCGGCTCCGCAGGTTCTGTCCTAGCTAACCGACTCAGCGAAGATGGTTCCTCGGTGATGGTGCTAGAAGCCGGGCGTTCTGATTCCCTCTGGGATCTTTTTATTTATATGCCCGCGGCATTCTCTTTCCCGATCGGCAACAAGTACTACGACTGGGCCTATGAGTCCGAACCAGAACCGGAAATGAACGGGCGCCGCATCTACCACGCACGCGGCAAAGTTCTCGGCGGCTCCAGCTCTATCAATGGCATGATTTTCCAGCGCGGAAATCCCATGGACTATGAGAAATGGGGAAAGCTCCCAGGCATGCAAAACTGGGATTATGCGCACGTACTGCCCTACTTTAACAAGATGGAAACCGCGCTAGCAGCCGATCCGAAGGACCCACGCCGCGGCCATGATGGTCCGCTGAAGCTTACCCGTGGTCCCGCCACAAATCCGCTTTTCCAGGCCTTCTTCCGTTCCGTACAGGAAGCCGGATACACGCTGACTAATGATGTCAATGGTTACCGCCAAGAGGGCTTTGCCCCCTTTGATCGCAACATTTTCAAAGGCAAGAGGTTCTCCGCAGCTCGCGCTTATTTGCATCCGGTCAAGTCTCGCAAGAACCTCGATGTGCGCACCCGGGCTTTCACCACTCGCATCCTTTTCACCGGCGACCAAGCTACCGGAGTGGAATATGAGTGGAAAGGAAAGACACGCCGAGTCCACGCGGATAAGGTGATTCTTTGCGGCGGCGCCTTCAATACACCCCAGTTATTGCAGGTAAGCGGCATTGGTGACCGTAAAGTCCTGGAGAAGGCCGGAGTAAAAGTTCTCAAGCATCTTCCCGGCGTCGGTGCTAATCTTCAAGACCATCTTGAGGTGTATGTGCAGTACAACTGCACCCAGCCGGTGAGCTCACAACCGTATTACAAGATGATCAACCGACCCAAGATTGGTCTCCAGTGGCTGCTTACTAAGAAGGGCCCTGTGGCATCCTCCCACTTTGAGGCCGGTGGTTTTGCCCGTTCCAATGATGACGAGGCCTATCCCAACCTCATGTTCCACTTCTTGCCGATGGCAATTCGCTATGACGGCACCCAGCCGGAGGGCGAGCACGGATTCCAATTCCATGTCGGGCCGATGTACTCCGATACCCTCGGTCACGTTCACATCACCTCACCGGATCCCAAGGAAAAACCAGAAATTATCTTTAATTACTTGGCCACTGACCAGGACCGCCGTGAGTGGGTAGAAGCCGTCCGAACTTCCCGCAAGTTGCTAGATACCCCGGCAATGAAGGAATTTACAGACGGAGAAATTTCCCCCGGCCCAGAAGTGCAGACCGATGAAGAGATCCTGGAATGGGTGCGTAACGACGCCGAAACCGCACTACACCCGTCCTGTACTGCGAAAATGGGTTCTGCTGATGATGAATACGCGGTTGTGGATCCGGACACTATGCAGGTTCACGGAATAAAAGGACTCTATGTCTGTGACGCTTCCGTCATGCCAATCATCACTAATGGAAATATCTACGCGCCTGTCATCATGATGGCGGAAAAGGCCGCCGACCTTATCAAAGGCGTGGAACCTCTCGCGCCGATCAACGAGCCTTTCTACCAGGCCAAGAAGGACATGCCGCTCTACGTGGAAGAGCCTCGCGATCACACGACTGTTATTCCTGGTTCAGATCACTAGCGCTATCGATCAGCTGAACTCCGCCAAAGGTAGCCGCCACATACACGCGGTTATCTTCACAGCGGACATAATCTGGCTCCACTCCCGCTGCAGCAAGCACCTGCTTTGCAGCCTCGACGCCCCGTAACGCCCCCGCGGTGACCGCAGCAGAAAGCGCTAGTGCTTTCTCTCGGTCCTCGGTGGGAATACGGGAGTTACGGGAAGAAATAGCTATCCCATCTGGCATCCGCACCGTGGGGACTGAGTGAACCTTTACCGGTATGCGTAGATCGGTGATTGCGCGCTGCGTGTGCAACAAGAATGCATAATCATCCTCGCCGTAAATAACATCCGTAGGGCCTACCAGATTAAGCAACGCTATCCGACGCGTCAGCCGAGGATTGGCGTCGATAAGCGTGCGCGCTGGCTCGTCGCGATCAATGTAGACGGCATCGACGCGTTCTGCTGCAAACGTTGGCTGGTTTTCTCGCGCCACAACCACCACCACTGCTCCCGGGATTCGTCTTGCAGTGCGGAGTAGCGCTACATGGCCGGCATGCACCTGGGTGCCGATAGAGACCATCACAACGGGCTTTCCTTGCTTTTTAAAAGCACGACTCAGCATCGCGATATCATCAAAAACCTGCGCCTGGCCAAATTGAAACATAATTCCCTTACAACAATTCCTCAGTAATATCGCCCAACATGGGCTGAAGCAACGCGCGCGCTGAATCACGCATCTGTTCCAACTGCTGTATTTGTACAAGACCAGCAAGAAACTCGGGCCACTTATCCTGTGCCACATGGATAGTCTGAATACCAAGCTCTGCGAGTAATAGCTCCGCGACGGTCGCAGCAACCTCATGTGTAGCGGAAACAGCATAAATCTCCGGCTTTAGTTCCTTAATAACAAAGGACATGCCGGGAAGTCGCCCCACGATGCCGTCCCAAGCGGGCTCATCAAAAGCTAATTCTGCGTCTTCGTGTACCCGACGATGCCCTACCGCGACCAGCTGAGTAACAAGCTCATTGTTTCCGCTGATCGAAAGAACCGGCCTCACCGGTTGCGCTTTAACAAGTCAGCGACGGAGACCGAATCTGATCGTTCTTCTCGTCGGCGCCGGCCATGCGGTTCAGGCTGTGTGGGGACCCAATCTACCTTGGCAAAGCTATTGGTCTCAGAAGCCACGGCGTTTCTAAAAGCGGCAGCACGCAGTTCCTCAGCCGTTTCCTGATCACTAGCCTGCTCAATCTCTGGAATCCGGGTAGCCTGCGCTTGAATCATCGTCGGCTCAACAAATACTTGTCCGGTGAGGTTTTCCAGTTGAGCCCGGACTTGTTCCACCTGCTCCCTAATCTGAGCCAAGGTTTCCTGCTCCTTGACCCGTTGCTCCAGAGCTTCTGCCTGCGCACGGTACCGGCCCACCAAAAAGAATCCGAGGACAGCTGCCCAGAGCGCCGCAAGTAATGCGAGCTTGAGCACTCCCTGGTTACCAGTGAACAGCATAATTATGCTTGCCACCAAAGACAGCACGACAAGCGCAATGAGTAACTTCTGCCCGTTGTCCTTCATGCCATCCAAACTACCGCACTGCATCCGTGGGCGGCACCGTACACGATCGTTCTAGCCAATATCCTGCCGCGGACATTGCTACTCCACCTAGCGCAGAGGCGATCACTATGGGCAAATCCTGTGCGGAAATACGCGACGTCAGAACAAAAATCCCTAGCCCCACGTAGCCTCCTCCAAAGATGGCGCCTGTCCATGCAGAGGCTTTGCCTATTACCAAAAATTGCGCAGCTGTCACCGGGTTAAGCTGCGAGCGGTCCTGCCCAATTTGGTCATTTTTGATGCGCGACCGCACTCGCACTGCCAATAACACGCACAGCGCTGTCATCCCCCACAGGCAGAGAGCAACGCCAAAAGGAACCGAAGACATCACGCCATAAAATCGCATCACCAAGATAAAGGATGCGATAACACAGAAGAGAAAAACCCCTACTAGTCCCAGAATGGAGGTTTGTTTCATAAGGTCCCCACAATCGGAAAAGTCCCCGTGATCAGCTCCGATAATGGGCGTCCGTCAAGTGTCGCCTCAGGGTCCGCCTCAAGCCACGGCACCAGCACAAAATTACGCTCGTGGGCATAAGGGTGCGGCAATGTGAGCACGGGATCATCCGATGTAACGCCCTCGATGCACACAATATCTACGTCGAGTGTCCGGGGCCCCCAGCGTCGAATCCGCTTGCGCTCCGCGGCCTGTTCTAGGGCTTGACCGCGTTTAAGCAGCTCCATCGGGGTCTCATCCACGTCTACGATGAGCACCGCGTTAAGGAACTCATCCTGGTCTTCTACGCCCCACGGTGGAGTGGCATAGATGCTGGATGCGGCAACCAGATCAGGCAGGAATTCCTCATACGCTGACCTCAGCAAAGCATAGCGGTCATCCATATTAGACCCGATGGATAAAACTGCCTTCATGTTATCTCCTTGCCACTACAGCAACATCAGCAAATTCCAGTGGGATGGGCGCGTGCGGTTTATGGACTGTCACTTCAATATGTGAAATCGGGAAAGTGTCCATCGCGGTATCTGCGATTTCCGATGCGACTGTCTCGATCAAGTCGCGTGGCTCTCCAGTAAGAATCCCATACGCCATTTGCGCAAGCTCACCATAATGAACCGTCTGGGTGAGATCGTCCTGGGTAGGGAAGGTAAGCCAGCACGTGATATCTACGAGGAACTCCTGCCCCTCACGTTTCTCATGCTCAAAGACGCCGTGGTAGGCATAACCCTTCAAACCTTTAAGTTCAATGCGATCCATGATTCCTCCATTTCGCCGCAACATCTACGGCAGCACGGGATAGCGCCACATTGTGCACCCGGACGCACCACACTCCATGATGAGCAGCGATTGCGGTGACTGCGGCAGTAGCAGCGTCTGTGTCTACGCCCAGGCTAGCTAAAAAGCGCTTTCTCGACGCCCCCAGCAACACCGGATAGTTGCTCATAAATTCTGGAAGGGCATTGAGCAATGCCCAATTGTCCTCTGCAGTTTTAGCAAAACCGAGACCCGGGTCAATGGCAATAGCTTGCGCGTCAACGCCAGCGGCAAGGGCATTGTCAACGAGCAGGTTCAAGCCTTCACGGACATCGCGCACCACATCGGTATGGTGTGCTCCTGAGGCATCTCCAAAGGTTGTTGTCTTCCAATGCATCAGGCACACCGGAAGCTCGGTATCAGCCATAACTGAATACATATTCTTGTCTGCAAGACCACCGGAGACGTCGTTAAGCAAGCCCACCCCGGCCTCGGCGGCGGCAGCCGCGACTGAGGCTCGCATGGTGTCCACCGATGTTTTAATTCCTTCAGCATGCAGAGCTGTAATGACAGGAATAACTCGAGCGAGCTCTACTTCTTCGCTCACTCGAGTAGCCCCTGGGCGGGTGGATTCCCCACCCACGTCGATGATATCTGCGCCCTCTGCCACAAGTTTTTTGGCATGAGCCACGGCGGAATCTACGTCGAGGTATTTCCCGCCATCAGAAAAGGAATCGGTGGTTACGTTGACGATTCCCATTACTTCCGTCATGTCAGCTCCGAATAAGGCTCAGAACCTCCGCACGGGAGGCCGCGTTAGTTTGGAAACCGCCTCGAACCGCAGACGTTGTGGTAGTAGCTCCTGGTTTGCGTATGCCGCGCATTGCCATGCATAGGTGCTCGCATTCGAGCACCACGATCACTGCCTGGGCTTCTAGTTTTTCCACCAGCGCATCGGCTACCTGGGAGGTTAACCGCTCCTGCACCTGGGGGCGCTTGGCGTAGAGGTCTACCAAGCGGGCCAATTTAGAAAGACCCGTCACTTTGCCAGACTCCCCCGGAATATATCCGATGTGCGCGACGCCAAAGAAAGGCACCAGGTGGTGCTCGCACGTTGAGTAGATCGGAATGTCTCGGACCAGCACTAGCTCACGGTGATCCTCGCTGAAAGTCTTATTTAAGACCTCCGTAGGATCCGTGTGCAGACCAGCAAAGACCTCTGCGTAGGCCTTTGCCACGCGTGCCGGTGTTTCTTTTAGCCCCTCACGCTCCGGGTCCTCGCCCACCGCAATGAGGAGTTCCCGGACTGCTGCTTCCGCGCGAACGCGATCAAACACGATCAATCCTTTCGCTTTGACGACGCGCCCGCTCAGCCTTGGAGGCGTCGAGAAGCGTGAACGGCTTCGGAGGTTCTTCGCCACGCTCGATAGCCAACTCCGTGGGAGTCTTTACCGGCTCACGGCCTGCCTGACGCGGGAAGCGGGCGTCTTCATCGGGGAAGACATCCCCTACCTCGCGGGGGACGATACCGTGGAAGAGTTCTTCCAAATCTGGGCGGCGGAGAGTTTCCTTCTCCAACAATTTTTCTGCCAAACGATCCAGATAGTCGCGATACTCCGCGAGGATCATGTACGCCTGGGTATGCGCACGATCGAGTAGATACTGCATCTCACGGTCAATCTGCGCCGCAATCTCTGGCGAGTACTCCAGCACCCCGCCGCCACCGCGGGCAAAGGGATCGCCTTGTTCCTCACCGTATTTGACCATCCCAAGGGTCGGCGACATGCCGTACTCGGTGATCATGGCCTTAGCAATCTTGGTTGCCTGCTCGATATCGGCGGATGCGCCAGTAGTGGGCTCGCCAAACACAAGTTCTTCAGCGGCACGTCCACCCATAGCAAAGACGAGGCGCGCATATAGCTCATCACGGTTGTACATGCCTTTGTCGTCTTCTTGTGCGGTCATGGCGTGTCCACCGGTGCGACCGCGCGCCAGAATAGTGACCTTGTATACCCGCTCAATGTTCTTCAGTGCCCAGGCGGCGAGAGTATGCCCACCCTCGTGGTAAGCAGTGACTTTCTTTTCTTTTTCAGAAATGACCTTGGACCGGCGCGGACCGCCCACTACTCGGTCTGTGGCTTCTTCCAGAGCGTCGGCAGTGATCACGGTCTTGCCAATGCGCGCTGTAAGCAGAGCGGCCTCGTTAAGCACGTTAGCCAGGTCTGCACCGGACATACCAGCGGTACGACGAGCCAGCGACTCTATGTCTGCGTCTGGTGCAAAGGGCTTGCCCTTAGCGTGAACCCGAAGGATCTGTTCGCGTCCCTTGAGATCAGGGTTGCTCACGGGGATCTGGCGATCAAAACGACCAGGGCGCAGCAAAGCCGGATCCAAAATGTCTGGTCGGTTAGTAGCGGCCATGATGATCACGCCCTCGCGGTCACCAAAACCATCCATTTCCACCAGCATCTGGTTGAGCGTCTGCTCACGCTCGTCGTGTCCGCCACCCATGCCGGACCCACGCTGCCGGCCCACGGCATCGATCTCATCGATGAAGATGATGCAGGGGCTGTTCTCACGGGCTTGCCTGAAGAGGTCACGCACGCGGGAGGCGCCCACGCCAACAAACATCTCTACAAAGTCAGAACCAGAAATTGAGTAGAACGGCACGCCGGCTTCTCCAGCAACAGCCCTGGCCAAGAGGGTCTTACCGGTACCGGGAGGCCCGTAGAGCAGAACACCACGGGGGATTTTTGCACCCAACTGCTCATACCTGGATGGGTCCTCCAAGAAGTCCTTGATCTCATGGAGCTCATCCACGGCTTCTTCTGCGCCCGCCACATCTGCAAACGTGTTGGTGGGCATGTCCTTGTTGAGCTCCTTAGCTCGGGAGCCACCAAAGCCGAACATGTTGTTTCCCTGCATACGGGAGAACATCCACATGATCAGGCCAAACACGATCAGCATCGGCAGGATGTATCCGAGTATGGAGACAAGGAAATTCTCCTTGTTCACGTTGGTGGAGTACTTCTCCGCCTCGGTCTTTTCTACCTTGCTAAAGATCTCCGGGGACGTACGGGCAGGGTAACGAGCCAGAATCTCTGAAACCTCATTGCCCTCGTAGTCGATGGCATTCTTAAGCTTGATGCGGATTCGCTGTTCGCGGTCATCAATTTGGACTTCTTTAACGTTTTTCTTGTCCAACTGGGTGATAGCAACTGACGTGTCTACCTGCTTATAGCCACGAGAGTCATTGCCTAGCAATGTAAAAACATAGATGGCCATCAAGATGATGGCGGCAATCACCGAATACTTCAGGATTTTTTTGTTCACTTGTAAACCTTAGGATGCAGCGAAGCAACAAACGGTAAGTCGCGGTACTTTTCTGCGAAGTCTAGACCGTAACCGATCACAAATTCATTGGGAATATCAAAACCGATATCAAGGCAGTCTATATCCGTCTTCACTGCCTCGGGTTTGCGTAGTAGCGCGACGATCTCCAAGGACTTTGGTTTACGCCCATTGAGATTGCGAATCAGCCACTTCAGAGTAAGGCCGGAATCAATGATGTCCTCAATAATTACTACGTTGCAGCCCTGAATGTTGCGGTCTAGATCTTTCAGAATCCGCACCATGCCAGAAGACGTGGCGGAGTTGCCGTAGGAGCTAACTGCCATAAATTCCATCTGGCAGGGGATGTCAAGGGCCCGGGCAAAGTCTGTAAGGAAGAATACCGCGCCCTTGAGCACACAGATCAAGACCAGATCGTCCTCTTCCTCGCGGTACTTATCAGACACCAGCGCCGCCATCTCCTTGATGCGGGTCTGGAGCTCTTCTTCGCTCACAAGGATGGCTTCAACATCATCTCCGTAGGAGTTGACGGGCACTTGATAATCCTTCTTGTCGTGCAT

Protein sequences of DBSCAN-SWA_1

>CP026501|1985342:1993803|1989096_1989552_-|AUY61261.1|DBSCAN-SWA
MKAVLSIGSNMDDRYALLRSAYEEFLPDLVAASSIYATPPWGVEDQDEFLNAVLIVDVDETPMELLKRGQALEQAAERKRIRRWGPRTLDVDIVCIEGVTSDDPVLTLPHPYAHERNFVLVPWLEADPEATLDGRPLSELITGTFPIVGTL
>CP026501|1985342:1993803|1988653_1989100_-|AUY61260.1|DBSCAN-SWA
MKQTSILGLVGVFLFCVIASFILVMRFYGVMSSVPFGVALCLWGMTALCVLLAVRVRSRIKNDQIGQDRSQLNPVTAAQFLVIGKASAWTGAIFGGGYVGLGIFVLTSRISAQDLPIVIASALGGVAMSAAGYWLERSCTVPPTDAVR
>CP026501|1985342:1993803|1989553_1989895_-|AUY61262.1|DBSCAN-SWA
MDRIELKGLKGYAYHGVFEHEKREGQEFLVDITCWLTFPTQDDLTQTVHYGELAQMAYGILTGEPRDLIETVASEIADTAMDTFPISHIEVTVHKPHAPIPLEFADVAVVARR
>CP026501|1985342:1993803|1987068_1987737_-|AUY61257.1|DBSCAN-SWA
MFQFGQAQVFDDIAMLSRAFKKQGKPVVMVSIGTQVHAGHVALLRTARRIPGAVVVVVARENQPTFAAERVDAVYIDRDEPARTLIDANPRLTRRIALLNLVGPTDVIYGEDDYAFLLHTQRAITDLRIPVKVHSVPTVRMPDGIAISSRNSRIPTEDREKALALSAAVTAGALRGVEAAKQVLAAAGVEPDYVRCEDNRVYVAATFGGVQLIDSASDLNQE
>CP026501|1985342:1993803|1990665_1991229_-|AUY61264.1|DBSCAN-SWA
MFDRVRAEAAVRELLIAVGEDPEREGLKETPARVAKAYAEVFAGLHTDPTEVLNKTFSEDHRELVLVRDIPIYSTCEHHLVPFFGVAHIGYIPGESGKVTGLSKLARLVDLYAKRPQVQERLTSQVADALVEKLEAQAVIVVLECEHLCMAMRGIRKPGATTTTSAVRGGFQTNAASRAEVLSLIRS
>CP026501|1985342:1993803|1993221_1993803_-|AUY61266.1|DBSCAN-SWA
MHDKKDYQVPVNSYGDDVEAILVSEEELQTRIKEMAALVSDKYREEEDDLVLICVLKGAVFFLTDFARALDIPCQMEFMAVSSYGNSATSSGMVRILKDLDRNIQGCNVVIIEDIIDSGLTLKWLIRNLNGRKPKSLEIVALLRKPEAVKTDIDCLDIGFDIPNEFVIGYGLDFAEKYRDLPFVASLHPKVYK
>CP026501|1985342:1993803|1987744_1988131_-|AUY61258.1|DBSCAN-SWA
MRPVLSISGNNELVTQLVAVGHRRVHEDAELAFDEPAWDGIVGRLPGMSFVIKELKPEIYAVSATHEVAATVAELLLAELGIQTIHVAQDKWPEFLAGLVQIQQLEQMRDSARALLQPMLGDITEELL
>CP026501|1985342:1993803|1985342_1987091_+|AUY61256.1|holin|DBSCAN-SWA
MFSHDTAGETVEDRHRDVVIVGGGSAGSVLANRLSEDGSSVMVLEAGRSDSLWDLFIYMPAAFSFPIGNKYYDWAYESEPEPEMNGRRIYHARGKVLGGSSSINGMIFQRGNPMDYEKWGKLPGMQNWDYAHVLPYFNKMETALAADPKDPRRGHDGPLKLTRGPATNPLFQAFFRSVQEAGYTLTNDVNGYRQEGFAPFDRNIFKGKRFSAARAYLHPVKSRKNLDVRTRAFTTRILFTGDQATGVEYEWKGKTRRVHADKVILCGGAFNTPQLLQVSGIGDRKVLEKAGVKVLKHLPGVGANLQDHLEVYVQYNCTQPVSSQPYYKMINRPKIGLQWLLTKKGPVASSHFEAGGFARSNDDEAYPNLMFHFLPMAIRYDGTQPEGEHGFQFHVGPMYSDTLGHVHITSPDPKEKPEIIFNYLATDQDRREWVEAVRTSRKLLDTPAMKEFTDGEISPGPEVQTDEEILEWVRNDAETALHPSCTAKMGSADDEYAVVDPDTMQVHGIKGLYVCDASVMPIITNGNIYAPVIMMAEKAADLIKGVEPLAPINEPFYQAKKDMPLYVEEPRDHTTVIPGSDH
>CP026501|1985342:1993803|1991221_1993225_-|AUY61265.1|DBSCAN-SWA
MNKKILKYSVIAAIILMAIYVFTLLGNDSRGYKQVDTSVAITQLDKKNVKEVQIDDREQRIRIKLKNAIDYEGNEVSEILARYPARTSPEIFSKVEKTEAEKYSTNVNKENFLVSILGYILPMLIVFGLIMWMFSRMQGNNMFGFGGSRAKELNKDMPTNTFADVAGAEEAVDELHEIKDFLEDPSRYEQLGAKIPRGVLLYGPPGTGKTLLARAVAGEAGVPFYSISGSDFVEMFVGVGASRVRDLFRQARENSPCIIFIDEIDAVGRQRGSGMGGGHDEREQTLNQMLVEMDGFGDREGVIIMAATNRPDILDPALLRPGRFDRQIPVSNPDLKGREQILRVHAKGKPFAPDADIESLARRTAGMSGADLANVLNEAALLTARIGKTVITADALEEATDRVVGGPRRSKVISEKEKKVTAYHEGGHTLAAWALKNIERVYKVTILARGRTGGHAMTAQEDDKGMYNRDELYARLVFAMGGRAAEELVFGEPTTGASADIEQATKIAKAMITEYGMSPTLGMVKYGEEQGDPFARGGGGVLEYSPEIAAQIDREMQYLLDRAHTQAYMILAEYRDYLDRLAEKLLEKETLRRPDLEELFHGIVPREVGDVFPDEDARFPRQAGREPVKTPTELAIERGEEPPKPFTLLDASKAERARRQSERIDRV
>CP026501|1985342:1993803|1988127_1988643_-|AUY61259.1|DBSCAN-SWA
MKDNGQKLLIALVVLSLVASIIMLFTGNQGVLKLALLAALWAAVLGFFLVGRYRAQAEALEQRVKEQETLAQIREQVEQVRAQLENLTGQVFVEPTMIQAQATRIPEIEQASDQETAEELRAAAFRNAVASETNSFAKVDWVPTQPEPHGRRRREERSDSVSVADLLKRNR
>CP026501|1985342:1993803|1989881_1990664_-|AUY61263.1|DBSCAN-SWA
MTEVMGIVNVTTDSFSDGGKYLDVDSAVAHAKKLVAEGADIIDVGGESTRPGATRVSEEVELARVIPVITALHAEGIKTSVDTMRASVAAAAAEAGVGLLNDVSGGLADKNMYSVMADTELPVCLMHWKTTTFGDASGAHHTDVVRDVREGLNLLVDNALAAGVDAQAIAIDPGLGFAKTAEDNWALLNALPEFMSNYPVLLGASRKRFLASLGVDTDAATAAVTAIAAHHGVWCVRVHNVALSRAAVDVAAKWRNHGSH

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY61256.1|1985342_1987091_+|holin	Choline dehydrogenase	A0A1V0SI18	Klosneuvirus	4.9e-61	31.5
AUY61257.1|1987068_1987737_-	Pantoate-beta-alanine ligase	NA	NA	NA	NA
AUY61258.1|1987744_1988131_-	Hypothetical protein	NA	NA	NA	NA
AUY61259.1|1988127_1988643_-	Hypothetical protein	NA	NA	NA	NA
AUY61260.1|1988653_1989100_-	Hypothetical protein	NA	NA	NA	NA
AUY61261.1|1989096_1989552_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	S4W084	Pandoravirus	1.1e-09	33.8
AUY61262.1|1989553_1989895_-	7,8-dihydroneopterin aldolase	NA	NA	NA	NA
AUY61263.1|1989881_1990664_-	Dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	6.5e-21	32.2
AUY61264.1|1990665_1991229_-	GTP cyclohydrolase 1	A0A1W7AF02	Streptococcus_virus	2.6e-48	57.8
AUY61265.1|1991221_1993225_-	Cell division protein FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	7.8e-111	50.3
AUY61266.1|1993221_1993803_-	Hypoxanthine-guanine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	3.0e-15	31.4