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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP019701 Agrobacterium rhizogenes strain K599 chromosome 1, complete sequence 1 crisprs WYL,csa3,cas3,DEDDh 0 3 4 0
CP019703 Agrobacterium rhizogenes strain K599 plasmid pRi2659, complete sequence 0 crisprs NA 0 0 0 0
CP019702 Agrobacterium rhizogenes strain K599 chromosome 2, complete sequence 0 crisprs csa3,DEDDh 0 0 1 0

Results visualization

1. CP019701
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP019701_2 2197780-2198013 Orphan I-C
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP019701_2 2.5|2197948|34|CP019701|CRISPRCasFinder,CRT 2197948-2197981 34 NZ_CP035512 Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence 57167-57200 2 0.941
CP019701_2 2.2|2197883|30|CP019701|PILER-CR 2197883-2197912 30 NZ_CP010858 Marinovum algicola DG 898 plasmid pMaD3 10201-10230 7 0.767
CP019701_1 1.1|1383936|34|CP019701|CRISPRCasFinder 1383936-1383969 34 HQ331142 Salmonella phage S16, complete genome 92743-92776 8 0.765
CP019701_2 2.2|2197883|30|CP019701|PILER-CR 2197883-2197912 30 NZ_LR594667 Variovorax sp. SRS16 plasmid 2 95193-95222 8 0.733
CP019701_2 2.2|2197883|30|CP019701|PILER-CR 2197883-2197912 30 NZ_LR594690 Variovorax sp. WDL1 plasmid 2 96203-96232 8 0.733
CP019701_2 2.2|2197883|30|CP019701|PILER-CR 2197883-2197912 30 NZ_LR594672 Variovorax sp. PBL-E5 plasmid 2 95193-95222 8 0.733
CP019701_2 2.2|2197883|30|CP019701|PILER-CR 2197883-2197912 30 NZ_LR594660 Variovorax sp. PBL-H6 plasmid 2 742967-742996 8 0.733
CP019701_1 1.1|1383936|34|CP019701|CRISPRCasFinder 1383936-1383969 34 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 1761529-1761562 9 0.735
CP019701_1 1.1|1383936|34|CP019701|CRISPRCasFinder 1383936-1383969 34 NZ_CP043499 Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence 1224348-1224381 9 0.735
CP019701_1 1.1|1383936|34|CP019701|CRISPRCasFinder 1383936-1383969 34 NC_008826 Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence 110083-110116 9 0.735
CP019701_1 1.1|1383936|34|CP019701|CRISPRCasFinder 1383936-1383969 34 JX181825 Salmonella phage STML-198, complete genome 134228-134261 9 0.735
CP019701_1 1.1|1383936|34|CP019701|CRISPRCasFinder 1383936-1383969 34 KJ000058 Salmonella phage STP4-a, complete genome 93822-93855 9 0.735
CP019701_1 1.1|1383936|34|CP019701|CRISPRCasFinder 1383936-1383969 34 NC_042044 Salmonella phage Melville, complete genome 94122-94155 9 0.735
CP019701_2 2.2|2197883|30|CP019701|PILER-CR 2197883-2197912 30 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 2418839-2418868 9 0.7
CP019701_2 2.2|2197883|30|CP019701|PILER-CR 2197883-2197912 30 NZ_CP020613 Paracoccus contaminans strain RKI 16-01929T=LMG 29738T=CCM 8701T=CIP 111112T plasmid unnamed, complete sequence 13264-13293 9 0.7
CP019701_2 2.2|2197883|30|CP019701|PILER-CR 2197883-2197912 30 NZ_CP022750 Sphingobium hydrophobicum strain C1 plasmid p4, complete sequence 34945-34974 9 0.7
CP019701_2 2.2|2197883|30|CP019701|PILER-CR 2197883-2197912 30 NZ_CP009453 Sphingopyxis sp. 113P3 plasmid unnamed, complete sequence 209426-209455 9 0.7
CP019701_2 2.2|2197883|30|CP019701|PILER-CR 2197883-2197912 30 NZ_CP029986 Sphingomonas sp. FARSPH plasmid p01, complete sequence 90252-90281 9 0.7
CP019701_2 2.5|2197948|34|CP019701|CRISPRCasFinder,CRT 2197948-2197981 34 NZ_AP018206 Leptolyngbya boryana NIES-2135 plasmid plasmid3 DNA, complete genome 2337-2370 9 0.735
CP019701_1 1.1|1383936|34|CP019701|CRISPRCasFinder 1383936-1383969 34 NZ_CP013110 Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence 1248601-1248634 10 0.706
CP019701_1 1.1|1383936|34|CP019701|CRISPRCasFinder 1383936-1383969 34 NZ_CP024310 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence 850917-850950 10 0.706
CP019701_1 1.1|1383936|34|CP019701|CRISPRCasFinder 1383936-1383969 34 NZ_CP013054 Sinorhizobium americanum CCGM7 plasmid C, complete sequence 1160346-1160379 10 0.706
CP019701_1 1.1|1383936|34|CP019701|CRISPRCasFinder 1383936-1383969 34 NZ_CP023064 Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence 670407-670440 10 0.706

1. spacer 2.5|2197948|34|CP019701|CRISPRCasFinder,CRT matches to NZ_CP035512 (Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence) position: , mismatch: 2, identity: 0.941

atccagatcgcctgtctgctgttcgcctaggcgc	CRISPR spacer
atccagatcgcctgtctgatgttcgcctgggcgc	Protospacer
****************** *********.*****

2. spacer 2.2|2197883|30|CP019701|PILER-CR matches to NZ_CP010858 (Marinovum algicola DG 898 plasmid pMaD3) position: , mismatch: 7, identity: 0.767

ggccatcaccggatggctgggcgcgcgtct	CRISPR spacer
gccgatcaccggctggctgcgcgcgcgcag	Protospacer
* * ******** ****** *******.  

3. spacer 1.1|1383936|34|CP019701|CRISPRCasFinder matches to HQ331142 (Salmonella phage S16, complete genome) position: , mismatch: 8, identity: 0.765

cggagcggcttcttcgccttcagcggcgtcgtca	CRISPR spacer
ctcatcttcgtcatcgccttcatcggcgtcgtca	Protospacer
*  * *  * ** ********* ***********

4. spacer 2.2|2197883|30|CP019701|PILER-CR matches to NZ_LR594667 (Variovorax sp. SRS16 plasmid 2) position: , mismatch: 8, identity: 0.733

ggccatcaccggatggctgggcgcgcgtct	CRISPR spacer
tacgctcaccggatggctgggcacgcagca	Protospacer
 .*  *****************.***. * 

5. spacer 2.2|2197883|30|CP019701|PILER-CR matches to NZ_LR594690 (Variovorax sp. WDL1 plasmid 2) position: , mismatch: 8, identity: 0.733

ggccatcaccggatggctgggcgcgcgtct	CRISPR spacer
tacgctcaccggatggctgggcacgcagca	Protospacer
 .*  *****************.***. * 

6. spacer 2.2|2197883|30|CP019701|PILER-CR matches to NZ_LR594672 (Variovorax sp. PBL-E5 plasmid 2) position: , mismatch: 8, identity: 0.733

ggccatcaccggatggctgggcgcgcgtct	CRISPR spacer
tacgctcaccggatggctgggcacgcagca	Protospacer
 .*  *****************.***. * 

7. spacer 2.2|2197883|30|CP019701|PILER-CR matches to NZ_LR594660 (Variovorax sp. PBL-H6 plasmid 2) position: , mismatch: 8, identity: 0.733

ggccatcaccggatggctgggcgcgcgtct	CRISPR spacer
tacgctcaccggatggctgggcacgcagca	Protospacer
 .*  *****************.***. * 

8. spacer 1.1|1383936|34|CP019701|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 9, identity: 0.735

cggagcggcttcttcgccttcagcggcgtcgtca	CRISPR spacer
ctttactacttcttcgccttcggcggcttcgtcg	Protospacer
*   .* .*************.***** *****.

9. spacer 1.1|1383936|34|CP019701|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

cggagcggcttcttcgccttcagcggcgtcgtca	CRISPR spacer
ctctactacttcttcgccttcggcggcttcgtcg	Protospacer
*   .* .*************.***** *****.

10. spacer 1.1|1383936|34|CP019701|CRISPRCasFinder matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 9, identity: 0.735

cggagcggct--tcttcgccttcagcggcgtcgtca	CRISPR spacer
--caccagtcgatcttcgccttccgcggcgccgtca	Protospacer
   * *.*..  *********** ******.*****

11. spacer 1.1|1383936|34|CP019701|CRISPRCasFinder matches to JX181825 (Salmonella phage STML-198, complete genome) position: , mismatch: 9, identity: 0.735

cggagcggcttcttcgccttcagcggcgtcgtca	CRISPR spacer
ttcatcttcgtcatcgccttcatcggcgtcgtca	Protospacer
.  * *  * ** ********* ***********

12. spacer 1.1|1383936|34|CP019701|CRISPRCasFinder matches to KJ000058 (Salmonella phage STP4-a, complete genome) position: , mismatch: 9, identity: 0.735

cggagcggcttcttcgccttcagcggcgtcgtca	CRISPR spacer
ttcatcttcgtcatcgccttcatcggcgtcgtca	Protospacer
.  * *  * ** ********* ***********

13. spacer 1.1|1383936|34|CP019701|CRISPRCasFinder matches to NC_042044 (Salmonella phage Melville, complete genome) position: , mismatch: 9, identity: 0.735

cggagcggcttcttcgccttcagcggcgtcgtca	CRISPR spacer
ttcatcttcgtcatcgccttcatcggcgtcgtca	Protospacer
.  * *  * ** ********* ***********

14. spacer 2.2|2197883|30|CP019701|PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 9, identity: 0.7

ggccatcaccggatggctgggcgcgcgtct	CRISPR spacer
gctgatcaccggatggctgggcacggcaag	Protospacer
* . ******************.**     

15. spacer 2.2|2197883|30|CP019701|PILER-CR matches to NZ_CP020613 (Paracoccus contaminans strain RKI 16-01929T=LMG 29738T=CCM 8701T=CIP 111112T plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

ggccatcaccggatggctgggcgcgcgtct	CRISPR spacer
cttctgcaccggatcgctgggcgcgcggag	Protospacer
  .*  ******** ************   

16. spacer 2.2|2197883|30|CP019701|PILER-CR matches to NZ_CP022750 (Sphingobium hydrophobicum strain C1 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.7

ggccatcaccggatggctgggcgcgcgtct	CRISPR spacer
attcatcaccggttcgctgggcgcgcagga	Protospacer
. .********* * ***********.   

17. spacer 2.2|2197883|30|CP019701|PILER-CR matches to NZ_CP009453 (Sphingopyxis sp. 113P3 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

ggccatcaccggatggctgggcgcgcgtct	CRISPR spacer
attcatcaccggttcgctgggcgcgcagga	Protospacer
. .********* * ***********.   

18. spacer 2.2|2197883|30|CP019701|PILER-CR matches to NZ_CP029986 (Sphingomonas sp. FARSPH plasmid p01, complete sequence) position: , mismatch: 9, identity: 0.7

ggccatcaccggatggctgggcgcgcgtct	CRISPR spacer
attcatcaccggttcgctgggcgcgcagga	Protospacer
. .********* * ***********.   

19. spacer 2.5|2197948|34|CP019701|CRISPRCasFinder,CRT matches to NZ_AP018206 (Leptolyngbya boryana NIES-2135 plasmid plasmid3 DNA, complete genome) position: , mismatch: 9, identity: 0.735

atccagatcgcctgtctgctgttcgcctaggcgc	CRISPR spacer
gttgagatcgcttgtctgctgtttgcctacgaaa	Protospacer
.*. *******.***********.***** * . 

20. spacer 1.1|1383936|34|CP019701|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.706

cggagcggcttcttcgccttcagcggcgtcgtca	CRISPR spacer
ctctactatttcttcgccttcggcggcttcgtcg	Protospacer
*   .* ..************.***** *****.

21. spacer 1.1|1383936|34|CP019701|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 10, identity: 0.706

cggagcggcttcttcgccttcagcggcgtcgtca	CRISPR spacer
ctctactatttcttcgccttcggcggcttcgtcg	Protospacer
*   .* ..************.***** *****.

22. spacer 1.1|1383936|34|CP019701|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.706

cggagcggcttcttcgccttcagcggcgtcgtca	CRISPR spacer
ctctactatttcttcgccttcggcggcttcgtcg	Protospacer
*   .* ..************.***** *****.

23. spacer 1.1|1383936|34|CP019701|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 10, identity: 0.706

cggagcggcttcttcgccttcagcggcgtcgtca	CRISPR spacer
ctctactatttcttcgccttcggcggcttcgtcg	Protospacer
*   .* ..************.***** *****.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 624985 : 632376 11 Geobacillus_phage(33.33%) portal,tail,head,protease,capsid NA
DBSCAN-SWA_2 1241745 : 1249224 10 Brucella_phage(16.67%) integrase attL 1244967:1244980|attR 1251563:1251576
DBSCAN-SWA_3 1394578 : 1402816 8 uncultured_Mediterranean_phage(66.67%) tRNA NA
DBSCAN-SWA_4 1419318 : 1427696 9 uncultured_Mediterranean_phage(75.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP019702
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 282742 : 291125 7 Enterobacteria_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage