CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP020404	Pasteurella multocida strain FDAARGOS_218 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0	0
CP020405	Pasteurella multocida strain FDAARGOS_218 chromosome, complete genome	0 crisprs	cas1,cas6f,cas7f,cas5f,cas8f,cas3,DEDDh,csa3,DinG	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1633375 : 1642732

Planktothrix_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVI58031.1\|1633375_1634374_+	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-15	29.4
ARB76127.1\|1634390_1635371_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.3e-15	26.4
ARB76128.1\|1635448_1636234_-	zinc ABC transporter permease	NA	NA	NA	NA
ARB76129.1\|1636242_1637034_-	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	3.4e-17	29.7
ARB76130.1\|1637268_1638822_+	murein DD-endopeptidase MepM	A0A2K9VGT1	Pontimonas_phage	8.4e-20	49.6
ARB76131.1\|1638895_1639843_-	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	1.9e-43	38.7
ARB76132.1\|1639912_1640800_-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA	NA	NA	NA
ARB76133.1\|1640799_1641417_-	lipoprotein localization protein LolB	NA	NA	NA	NA
ARB76134.1\|1641457_1642732_-	multifunctional CCA addition/repair protein	A0A0F6YPT7	Sinorhizobium_phage	3.3e-91	49.2

DBSCAN-SWA_2

2041269 : 2143529

115

Mannheimia_phage(26.32%)

coat,tail,integrase,holin,tRNA,terminase,head

attL 2090940:2090955|attR 2103260:2103275

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARB76444.1\|2041269_2042673_-\|tRNA	asparagine--tRNA ligase	A0A1V0SDB6	Indivirus	1.1e-82	38.2
ARB76445.1\|2042967_2044179_+	ROK family protein	NA	NA	NA	NA
ARB76446.1\|2044344_2045079_+	dethiobiotin synthase	NA	NA	NA	NA
ARB76447.1\|2045147_2045762_-	DedA family protein	NA	NA	NA	NA
ARB76448.1\|2045979_2046264_+	50S ribosomal protein L25	NA	NA	NA	NA
ARB76449.1\|2046415_2047447_-\|integrase	integrase	A0A0M3LQJ3	Mannheimia_phage	1.7e-125	65.1
ARB76450.1\|2047448_2047700_-	DUF4224 domain-containing protein	NA	NA	NA	NA
ARB76451.1\|2048604_2048835_-	hypothetical protein	NA	NA	NA	NA
ARB76452.1\|2048844_2049129_-	hypothetical protein	Q6J1P1	Burkholderia_virus	8.6e-08	42.1
ARB76453.1\|2049347_2049986_-	hypothetical protein	Q7Y5V4	Haemophilus_phage	3.4e-44	73.7
ARB76454.1\|2050287_2050695_-	N-acetyltransferase	NA	NA	NA	NA
ARB76455.1\|2050807_2051257_-	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	1.3e-37	53.9
ARB76456.1\|2051267_2051888_-	single-stranded DNA-binding protein	A0A0A7RVW0	Clostridium_phage	8.7e-29	52.8
ARB76457.1\|2052083_2052695_-	hypothetical protein	A0A0M3LQ72	Mannheimia_phage	1.2e-43	68.4
ARB76458.1\|2053035_2054061_-	hypothetical protein	NA	NA	NA	NA
ARB76459.1\|2054143_2054794_-	ribonuclease H	R9ZX90	Cellulophaga_phage	2.3e-08	24.4
ARB76460.1\|2054796_2055384_-	hypothetical protein	A0A2R4P8H7	Staphylococcus_phage	1.8e-36	42.1
ARB76461.1\|2055731_2055959_-	hypothetical protein	NA	NA	NA	NA
ARB76462.1\|2055945_2056236_-	hypothetical protein	NA	NA	NA	NA
ARB76463.1\|2056321_2056948_-	hypothetical protein	A0A0R6PGW1	Moraxella_phage	3.8e-32	62.0
ARB76767.2\|2057367_2058624_-	hypothetical protein	NA	NA	NA	NA
ARB76464.1\|2058706_2059504_-	hypothetical protein	NA	NA	NA	NA
ARB76465.1\|2059621_2060086_-	DUF4760 domain-containing protein	NA	NA	NA	NA
ARB76466.1\|2060538_2060766_-	hypothetical protein	NA	NA	NA	NA
ARB76467.1\|2061008_2061218_-	hypothetical protein	NA	NA	NA	NA
ARB76468.1\|2061230_2061398_+	DUF1508 domain-containing protein	A0A2P1N580	Mycobacterium_phage	1.9e-07	57.5
ARB76469.1\|2061708_2062023_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	1.1e-19	51.0
ARB76470.1\|2062019_2062310_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	2.4e-13	47.7
ARB76471.1\|2062333_2063041_-	hypothetical protein	NA	NA	NA	NA
ARB76472.1\|2063037_2064105_-	DUF262 domain-containing protein	A0A0M4RT01	Citrobacter_phage	1.1e-05	29.3
ARB76473.1\|2064148_2064838_-	helix-turn-helix transcriptional regulator	Q7Y5W5	Haemophilus_phage	8.4e-73	57.8
ARB76474.1\|2064965_2065175_+	XRE family transcriptional regulator	A0A077K9X2	Edwardsiella_phage	5.5e-12	52.3
ARB76768.1\|2065243_2065471_+	hypothetical protein	NA	NA	NA	NA
ARB76475.2\|2065473_2065881_-	hypothetical protein	NA	NA	NA	NA
ARB76476.1\|2065987_2066233_+	hypothetical protein	A0A0M3LR73	Mannheimia_phage	2.0e-13	54.2
ARB76477.1\|2066310_2067129_+	DNA replication protein	Q7Y5W1	Haemophilus_phage	1.1e-74	57.1
ARB76478.1\|2067125_2068484_+	DNA helicase	A0A0M3LQC0	Mannheimia_phage	5.8e-126	50.9
ARB76479.1\|2068486_2068912_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	5.0e-44	61.5
ARB76480.1\|2069002_2069221_+	hypothetical protein	NA	NA	NA	NA
ARB76481.1\|2069220_2069817_+	recombinase NinG	A0A2I7REF6	Vibrio_phage	2.1e-35	46.7
ARB76482.1\|2069816_2070182_+	hypothetical protein	NA	NA	NA	NA
ARB76483.1\|2070258_2071176_+	DUF4747 domain-containing protein	NA	NA	NA	NA
ARB76484.1\|2071185_2071761_+	hypothetical protein	NA	NA	NA	NA
ARB76485.2\|2072236_2072854_+	DNA-binding protein	A0A0P0ZCS0	Stx2-converting_phage	6.1e-14	46.3
ARB76486.1\|2073121_2073457_+	hypothetical protein	NA	NA	NA	NA
ARB76487.1\|2073467_2074019_+	hypothetical protein	NA	NA	NA	NA
ARB76488.1\|2074133_2074499_+\|holin	phage holin, lambda family	NA	NA	NA	NA
ARB76489.1\|2074470_2075055_+	hypothetical protein	Q7Y5V0	Haemophilus_phage	2.2e-58	55.7
ARB76490.1\|2075057_2075381_+	DUF2570 domain-containing protein	NA	NA	NA	NA
ARB76491.1\|2075286_2075568_+	hypothetical protein	NA	NA	NA	NA
ARB76492.1\|2075599_2076034_-	CopG family transcriptional regulator	A0A0R6PJ17	Moraxella_phage	4.0e-20	36.6
ARB76493.1\|2076062_2076245_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	3.8e-09	54.2
ARB76494.2\|2076327_2076864_+\|terminase	terminase small subunit	A0A0M3LSU1	Mannheimia_phage	5.2e-46	62.4
ARB76495.1\|2076847_2078080_+\|terminase	PBSX family phage terminase large subunit	A0A0M3LTA2	Mannheimia_phage	2.2e-193	78.6
ARB76496.1\|2078089_2079493_+	DUF4055 domain-containing protein	A0A0M3LQA1	Mannheimia_phage	2.6e-153	60.2
ARB76769.1\|2079482_2081084_+\|head	phage head morphogenesis protein	A0A0M3LQ07	Mannheimia_phage	9.5e-152	52.3
ARB76497.1\|2081086_2081305_+	hypothetical protein	NA	NA	NA	NA
ARB76498.1\|2081279_2081714_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	D0UIJ3	Aggregatibacter_phage	2.6e-40	61.2
ARB76499.1\|2082049_2082835_+	hypothetical protein	A0A1V0DY60	Dinoroseobacter_phage	2.5e-28	38.4
ARB76500.1\|2082852_2084010_+\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	7.0e-80	43.0
ARB76501.1\|2084066_2084303_+	hypothetical protein	NA	NA	NA	NA
ARB76502.1\|2084319_2084787_+	hypothetical protein	A0A0M3LSP7	Mannheimia_phage	7.5e-33	54.0
ARB76503.1\|2084788_2085175_+	hypothetical protein	NA	NA	NA	NA
ARB76504.1\|2085176_2085578_+	hypothetical protein	A0A0M3LPJ5	Mannheimia_phage	1.7e-38	60.3
ARB76505.1\|2085982_2086999_+	hypothetical protein	A0A0M3LQ19	Mannheimia_phage	1.4e-140	73.7
ARB76506.1\|2087072_2087477_+	hypothetical protein	A0A0M3LPJ3	Mannheimia_phage	3.7e-36	56.7
ARB76507.1\|2087485_2087815_+	hypothetical protein	A0A0M3LQT0	Mannheimia_phage	4.6e-29	62.5
ARB76508.1\|2087822_2088149_+\|tail	phage tail protein	A0A1W6JNT2	Morganella_phage	1.2e-16	37.6
ARB76509.1\|2088166_2091430_+\|tail	phage tail protein	A0A0M3LS69	Mannheimia_phage	4.7e-89	32.0
2090940:2090955	attL	NA	NA	NA	NA
ARB76510.1\|2091526_2092081_+\|integrase	integrase	NA	NA	NA	NA
ARB76511.1\|2092556_2093075_+	hypothetical protein	NA	NA	NA	NA
ARB76512.1\|2093076_2093571_+	hypothetical protein	NA	NA	NA	NA
ARB76513.1\|2093690_2095649_+	ATP-binding protein	NA	NA	NA	NA
ARB76514.1\|2095742_2096714_-	hypothetical protein	Q8HA04	Enterobacteria_phage	4.8e-90	59.2
ARB76515.1\|2097084_2097909_+	hypothetical protein	Q0H8C7	Salmonella_phage	1.4e-58	57.4
ARB76516.1\|2098106_2098631_+	hypothetical protein	A0A1B1P9D9	Acinetobacter_phage	7.1e-24	36.2
ARB76517.1\|2098658_2099309_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.4e-37	39.3
ARB76518.1\|2099310_2100033_+	hypothetical protein	A0A1W6JP31	Morganella_phage	1.0e-52	45.3
ARB76519.1\|2100061_2100676_+\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	1.1e-28	39.1
ARB76520.1\|2100679_2104327_+	host specificity protein J	A0A0R6PIC9	Moraxella_phage	1.6e-141	37.2
2103260:2103275	attR	NA	NA	NA	NA
ARB76521.1\|2104340_2105423_+	hypothetical protein	NA	NA	NA	NA
ARB76522.1\|2105432_2106020_+	DUF4376 domain-containing protein	A0A0R6PGN1	Moraxella_phage	2.5e-25	42.2
ARB76523.1\|2106009_2106267_+	DNA helicase UvrD	A0A0M3LNN9	Mannheimia_phage	1.4e-20	60.0
ARB76524.1\|2106541_2107384_-	patatin family protein	NA	NA	NA	NA
ARB76525.1\|2107542_2108337_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
ARB76526.1\|2108420_2109335_+	acetyl-CoA carboxylase carboxyl transferase subunit beta	NA	NA	NA	NA
ARB76527.1\|2109327_2110656_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
ARB76528.1\|2110686_2111337_-	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	7.5e-07	32.7
ARB76529.1\|2111444_2112104_+	TIGR01621 family pseudouridine synthase	NA	NA	NA	NA
ARB76530.1\|2112242_2113226_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	4.2e-33	36.8
ARB76770.1\|2113266_2113716_+	hypothetical protein	NA	NA	NA	NA
ARB76531.1\|2113738_2116126_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
ARB76532.1\|2116129_2116426_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	4.6e-12	40.0
ARB76771.1\|2116508_2116994_+	endopeptidase	S5MM68	Bacillus_phage	7.1e-10	36.6
ARB76533.1\|2117013_2117940_-	hypothetical protein	A1IMD5	Streptococcus_phage	3.1e-30	30.8
AVI58033.1\|2118312_2119326_+	cyclic pyranopterin monophosphate synthase	NA	NA	NA	NA
ARB76534.1\|2119385_2119862_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
ARB76535.1\|2119874_2120120_+	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
ARB76536.1\|2120120_2120573_+	molybdopterin synthase catalytic subunit	NA	NA	NA	NA
ARB76537.1\|2120634_2121825_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
ARB76538.1\|2121967_2123056_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
ARB76539.1\|2123119_2123620_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.3e-19	40.6
ARB76540.1\|2123790_2126400_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	2.0e-18	24.9
ARB76541.1\|2126553_2127573_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
ARB76542.1\|2127659_2128493_+	PHP domain-containing protein	NA	NA	NA	NA
ARB76543.1\|2128653_2131260_+	type I DNA topoisomerase	A0A2K9L1Q2	Tupanvirus	1.0e-86	33.9
ARB76544.1\|2131325_2131604_-	hypothetical protein	NA	NA	NA	NA
ARB76545.1\|2131616_2132009_-\|holin	phage holin family protein	NA	NA	NA	NA
ARB76546.1\|2132067_2132379_-	DUF883 domain-containing protein	NA	NA	NA	NA
ARB76547.1\|2133248_2134676_-	exodeoxyribonuclease I	NA	NA	NA	NA
ARB76548.1\|2134777_2135644_-	hypothetical protein	NA	NA	NA	NA
ARB76549.1\|2135812_2140300_-	chromosome partition protein MukB	NA	NA	NA	NA
ARB76550.1\|2140299_2141031_-	condensin subunit E	NA	NA	NA	NA
ARB76551.1\|2141081_2142407_-	chromosome partition protein MukF	NA	NA	NA	NA
ARB76552.1\|2142590_2143529_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.6e-125	80.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage