CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP020409	Yersinia sp. FDAARGOS_228 chromosome, complete genome	0 crisprs	WYL,cas3,DEDDh,RT,csa3,DinG	0	0	10	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1700700 : 1708834

uncultured_Mediterranean_phage(33.33%)

integrase

attL 1695152:1695166|attR 1714174:1714188

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1695152:1695166	attL	NA	NA	NA	NA
ARB83910.1\|1700700_1701453_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.6e-64	50.8
ARB83911.1\|1701475_1702102_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.8e-35	51.2
ARB83912.1\|1702501_1703485_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.3e-07	32.8
ARB83913.1\|1703539_1704538_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	3.6e-32	37.3
ARB83914.1\|1704644_1707206_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.3e-25	24.4
ARB83915.1\|1707364_1708834_+\|integrase	integrase	A0A0R6PGY7	Moraxella_phage	1.3e-22	27.4
1714174:1714188	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2191646 : 2200566

Escherichia_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARB84304.1\|2191646_2192216_+	N-acetyltransferase	D0R097	Streptococcus_phage	1.3e-10	28.5
ARB84305.1\|2192352_2193588_+	alanine transaminase	NA	NA	NA	NA
ARB84306.1\|2193763_2194288_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	7.6e-26	51.0
AVI44523.1\|2194346_2194421_-	membrane protein YpdK	NA	NA	NA	NA
ARB84307.1\|2194929_2195361_-	hypothetical protein	Q7Y3V7	Yersinia_phage	6.7e-28	49.3
ARB84308.2\|2195457_2196003_-	(Fe-S)-binding protein	NA	NA	NA	NA
ARB84309.1\|2196017_2196632_-	molecular chaperone	A0A077SLS7	Escherichia_phage	1.9e-44	48.7
ARB84310.1\|2196735_2197512_-	diguanylate cyclase	A0A077SK59	Escherichia_phage	7.8e-43	42.2
ARB84311.1\|2197513_2198131_-	dimethylsulfoxide reductase, chain B	A0A077SL61	Escherichia_phage	3.4e-89	70.2
ARB84312.1\|2198142_2200566_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	4.8e-264	55.8

DBSCAN-SWA_3

2430133 : 2445782

Enterobacterial_phage(16.67%)

plate,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARB84491.2\|2430133_2431078_-\|protease	protease	NA	NA	NA	NA
ARB84492.1\|2431245_2431488_-	DinI family protein	K7PKM2	Enterobacterial_phage	1.7e-25	70.9
ARB84493.1\|2431737_2432460_-	helix-turn-helix domain-containing protein	F1C599	Cronobacter_phage	6.3e-63	51.1
ARB84494.2\|2432416_2432626_-	hypothetical protein	NA	NA	NA	NA
ARB84495.1\|2432724_2433204_+	antitermination protein Q	K7PGW2	Enterobacterial_phage	1.6e-38	61.6
ARB84496.1\|2433466_2433745_+	hypothetical protein	H6WRZ3	Salmonella_phage	1.6e-14	47.2
ARB84497.1\|2433746_2434262_+	lysozyme	A0A2H4JCH1	uncultured_Caudovirales_phage	1.9e-53	58.4
ARB84498.1\|2434258_2434588_+	DUF2570 domain-containing protein	NA	NA	NA	NA
ARB84499.1\|2434896_2435427_+	ATP-binding protein	NA	NA	NA	NA
ARB84500.1\|2435431_2435596_+	DUF2635 domain-containing protein	NA	NA	NA	NA
ARB84501.1\|2435622_2437131_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	3.9e-107	45.8
ARB84502.1\|2437172_2437541_+\|tail	phage tail protein	NA	NA	NA	NA
ARB84503.1\|2437542_2437842_+\|tail	phage tail assembly protein	NA	NA	NA	NA
ARB84504.1\|2437962_2439309_+	chemotaxis protein	NA	NA	NA	NA
ARB84505.1\|2439412_2440819_+	hypothetical protein	Q8SBG8	Shigella_phage	5.4e-18	32.8
ARB84506.1\|2440815_2441886_+\|tail	phage tail protein	M4M9L5	Vibrio_phage	2.5e-39	29.8
ARB84507.1\|2441901_2442495_+\|plate	baseplate assembly protein	NA	NA	NA	NA
ARB84508.1\|2442494_2442932_+	hypothetical protein	A0A0C4UR04	Shigella_phage	2.9e-18	46.2
ARB84509.1\|2442935_2444072_+\|plate	phage baseplate protein	B5TK75	Pseudomonas_phage	7.7e-31	30.5
ARB84510.1\|2444068_2444665_+	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	6.2e-32	37.8
ARB84511.1\|2444714_2445782_+	hypothetical protein	A9YX14	Burkholderia_phage	1.6e-46	48.4

DBSCAN-SWA_4

2875375 : 2889113

Pectobacterium_phage(53.33%)

tRNA,integrase

attL 2871463:2871477|attR 2882544:2882558

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2871463:2871477	attL	NA	NA	NA	NA
ARB84836.1\|2875375_2876458_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	9.4e-103	51.0
ARB84837.1\|2876432_2876699_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.1e-09	42.9
ARB84838.1\|2876771_2877284_-	hypothetical protein	H9C156	Pectobacterium_phage	7.4e-34	45.9
ARB84839.1\|2877280_2879374_-	hypothetical protein	H9C157	Pectobacterium_phage	3.4e-93	34.4
ARB84840.1\|2879450_2879723_-	hypothetical protein	NA	NA	NA	NA
ARB84841.1\|2879863_2880094_-	hypothetical protein	A0A2H4JG91	uncultured_Caudovirales_phage	1.6e-12	43.7
ARB84842.1\|2880311_2880647_-	hypothetical protein	NA	NA	NA	NA
ARB84843.1\|2880873_2881110_-	hypothetical protein	NA	NA	NA	NA
ARB84844.1\|2881231_2881456_-	hypothetical protein	NA	NA	NA	NA
ARB84845.1\|2881630_2882023_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	1.0e-30	55.4
ARB84846.1\|2882104_2882302_+	transcriptional regulator	H9C161	Pectobacterium_phage	7.1e-09	49.2
ARB84847.1\|2882342_2882783_+\|tRNA	tRNA-(guanine-N1)-methyltransferase	H9C162	Pectobacterium_phage	1.9e-33	53.1
2882544:2882558	attR	NA	NA	NA	NA
ARB84848.1\|2882796_2883048_+	cell envelope biogenesis protein OmpA	NA	NA	NA	NA
ARB84849.1\|2883040_2883229_+	hypothetical protein	NA	NA	NA	NA
ARB84850.1\|2883241_2884276_+	hypothetical protein	G9L6A8	Escherichia_phage	1.5e-41	55.3
ARB86716.1\|2884304_2884712_+	replication protein	A0A0U2JGJ0	Escherichia_phage	1.2e-31	47.2
ARB84851.1\|2884726_2885227_+	hypothetical protein	H9C166	Pectobacterium_phage	3.9e-19	44.5
ARB84852.1\|2885223_2887389_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	1.9e-216	50.4
ARB84853.1\|2887535_2887718_+	hypothetical protein	NA	NA	NA	NA
ARB84854.1\|2887792_2888386_+	DUF1367 domain-containing protein	H9C173	Pectobacterium_phage	2.0e-59	56.6
ARB84855.1\|2888394_2888679_+	DUF1364 domain-containing protein	H9C174	Pectobacterium_phage	6.1e-38	78.7
ARB86717.1\|2888687_2889113_+	antitermination protein Q	K7PGW2	Enterobacterial_phage	2.4e-38	62.5

DBSCAN-SWA_5

2892808 : 2917248

Cronobacter_phage(55.0%)

head,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARB84860.1\|2892808_2893126_+	hypothetical protein	H6WRZ3	Salmonella_phage	9.3e-27	62.1
ARB84861.1\|2893109_2893616_+	lysozyme	I6PBN2	Cronobacter_phage	3.4e-47	59.1
ARB84862.1\|2893600_2893936_+	DUF2570 domain-containing protein	NA	NA	NA	NA
ARB84863.1\|2894211_2894532_-	hypothetical protein	NA	NA	NA	NA
ARB84864.1\|2894824_2895151_+	hypothetical protein	NA	NA	NA	NA
ARB84865.1\|2895319_2895922_+	hypothetical protein	A0A077KBY7	Edwardsiella_phage	4.0e-71	73.0
ARB84866.1\|2895921_2897403_+\|terminase	terminase	A0A1W6JNY3	Morganella_phage	1.1e-250	83.0
ARB86718.1\|2897447_2898890_+	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	2.6e-132	55.3
ARB84867.1\|2898891_2899791_+\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	2.2e-97	59.7
ARB84868.2\|2899827_2900571_+	hypothetical protein	NA	NA	NA	NA
ARB84869.1\|2900622_2901972_+	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	9.8e-126	52.9
ARB84870.1\|2901972_2902401_+	hypothetical protein	NA	NA	NA	NA
ARB84871.1\|2902411_2903494_+	hypothetical protein	A0A125RNM3	Pseudomonas_phage	4.4e-76	43.8
ARB84872.1\|2903504_2903789_+	hypothetical protein	NA	NA	NA	NA
ARB84873.1\|2903791_2904172_+	hypothetical protein	F1C5E2	Cronobacter_phage	7.2e-26	49.6
ARB84874.1\|2904171_2904483_+	hypothetical protein	NA	NA	NA	NA
ARB84875.1\|2904479_2904830_+	hypothetical protein	G0ZNE2	Cronobacter_phage	1.8e-26	53.4
ARB84876.1\|2904831_2905200_+	hypothetical protein	F1C5E3	Cronobacter_phage	7.7e-41	68.0
ARB84877.1\|2905196_2905580_+	hypothetical protein	G0ZNE4	Cronobacter_phage	5.7e-47	68.5
ARB84878.1\|2905604_2906354_+	DNA breaking-rejoining protein	G0ZNE6	Cronobacter_phage	4.0e-52	48.8
ARB84879.1\|2906493_2907183_+	hypothetical protein	A0A1W6JNX2	Morganella_phage	3.0e-54	50.9
ARB84880.1\|2907175_2910928_+	hypothetical protein	A0A1W6JNU2	Morganella_phage	2.2e-159	39.9
ARB84881.1\|2910924_2911398_+	hypothetical protein	F1C5F0	Cronobacter_phage	1.6e-46	53.9
ARB84882.1\|2911397_2911868_+	DUF1833 domain-containing protein	B1GS46	Salmonella_phage	3.0e-37	46.8
ARB84883.1\|2911903_2912296_+	peptidoglycan endopeptidase	F1C5F2	Cronobacter_phage	1.2e-28	43.5
ARB84884.1\|2912282_2914778_+\|tail	phage tail protein	A0A1B1W274	Salmonella_phage	4.4e-220	49.1
ARB84885.1\|2914836_2917248_+	hypothetical protein	A0A291AXF7	Shigella_phage	2.2e-43	43.6

DBSCAN-SWA_6

2999262 : 3010592

Anomala_cuprea_entomopoxvirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARB84957.1\|2999262_3000789_-	sugar ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	6.3e-12	26.0
ARB84958.1\|3001123_3001936_+	IclR family transcriptional regulator	NA	NA	NA	NA
AVI44457.1\|3002079_3002793_+	DUF554 domain-containing protein	NA	NA	NA	NA
ARB84959.1\|3002904_3003117_-	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	3.4e-09	43.5
ARB84960.1\|3003569_3005498_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	9.7e-127	36.8
ARB84961.1\|3005501_3006053_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.4e-16	33.7
ARB84962.1\|3006148_3006346_+	50S ribosomal protein L35	NA	NA	NA	NA
ARB84963.1\|3006383_3006740_+	50S ribosomal protein L20	NA	NA	NA	NA
ARB84964.1\|3007207_3008191_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.8e-34	38.0
ARB84965.1\|3008204_3010592_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.3e-07	25.8

DBSCAN-SWA_7

3555428 : 3592363

Escherichia_phage(38.24%)

plate,tail,head,integrase,capsid,portal,holin

attL 3555584:3555634|attR 3592531:3592581

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARB86767.1\|3555428_3555578_+\|integrase	integrase	F1C5B2	Cronobacter_phage	6.3e-10	73.0
3555584:3555634	attL	NA	NA	NA	NA
ARB85388.1\|3555852_3556464_+	protein cII	NA	NA	NA	NA
ARB85389.1\|3556458_3557496_-	beta family protein	NA	NA	NA	NA
ARB85390.1\|3557495_3558038_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
ARB86768.1\|3558038_3558539_-	transmembrane HD family hydrolase	NA	NA	NA	NA
ARB85391.1\|3558972_3559983_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	1.1e-116	61.3
ARB85392.1\|3559992_3560580_-	transcriptional regulator	A0A1S6KZZ7	Salmonella_phage	9.5e-25	35.3
ARB86769.1\|3560779_3560959_+	hypothetical protein	NA	NA	NA	NA
AVI44475.1\|3560986_3561508_+	hypothetical protein	A0A0M4QWN1	Salmonella_phage	2.3e-22	38.3
ARB85393.1\|3561508_3561967_-	hypothetical protein	NA	NA	NA	NA
ARB86770.1\|3562383_3562851_+	replication protein B	M1SV55	Escherichia_phage	2.1e-43	53.9
ARB86771.1\|3562918_3563170_+	DUF2732 domain-containing protein	NA	NA	NA	NA
ARB85394.1\|3563181_3563400_+	hypothetical protein	Q6K1F5	Salmonella_virus	1.1e-13	53.5
ARB85395.1\|3563396_3565667_+	replication endonuclease	U5N0W3	Enterobacteria_phage	1.1e-265	60.2
ARB85396.1\|3565779_3565974_+	hypothetical protein	NA	NA	NA	NA
ARB85397.1\|3566429_3567299_+	DUF559 domain-containing protein	NA	NA	NA	NA
ARB85398.1\|3567616_3567871_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
ARB85399.1\|3567867_3568209_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
ARB85400.1\|3568947_3571974_+	NACHT domain-containing protein	NA	NA	NA	NA
AVI44476.1\|3572052_3573072_-\|portal	phage portal protein	F1BUR7	Erwinia_phage	9.3e-153	75.1
ARB85401.1\|3573071_3574835_-	oxidoreductase	F1BUR2	Erwinia_phage	3.2e-286	80.4
ARB85402.1\|3574977_3575799_+\|capsid	GPO family capsid scaffolding protein	Q6K1I7	Salmonella_virus	2.5e-92	61.1
ARB85403.1\|3575820_3576888_+\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	9.8e-145	72.8
ARB85404.1\|3576891_3577548_+	hypothetical protein	F1BUQ7	Erwinia_phage	6.8e-72	67.6
ARB85405.1\|3577637_3578144_+\|head	head completion/stabilization protein	M1SNN6	Escherichia_phage	2.6e-71	78.7
ARB85406.1\|3578143_3578347_+\|tail	phage tail protein	A0A0F7LCN2	Escherichia_phage	8.0e-24	80.6
ARB85407.1\|3578337_3578559_+	primosomal protein	A0A218M4L5	Erwinia_phage	6.0e-25	71.2
ARB85408.1\|3578542_3579052_+	lysozyme	A0A218M4K3	Erwinia_phage	9.6e-74	80.2
ARB85409.1\|3579048_3579474_+	protein lysB	O80310	Escherichia_phage	2.4e-38	65.2
ARB85410.1\|3579361_3579607_+\|holin	holin	S4TNY4	Salmonella_phage	3.2e-27	78.2
ARB85411.1\|3579569_3580037_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	7.2e-68	78.7
ARB85412.1\|3580029_3580476_+	phage virion morphogenesis protein	O80313	Escherichia_phage	2.5e-49	69.2
ARB85413.1\|3580509_3581175_-	hypothetical protein	NA	NA	NA	NA
ARB85414.1\|3581292_3581928_+\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	1.2e-94	81.5
ARB85415.1\|3581924_3582272_+\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	1.7e-42	73.0
ARB85416.1\|3582276_3583185_+\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	1.0e-134	81.8
ARB85417.1\|3583177_3583783_+\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	2.0e-86	76.9
ARB85418.1\|3583787_3585062_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	4.6e-101	44.7
ARB85419.1\|3585064_3585643_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.4e-43	44.5
ARB85420.1\|3585772_3586963_+\|tail	phage tail protein	A0A0F7LBW9	Escherichia_phage	1.2e-207	89.4
ARB85421.1\|3586975_3587494_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	2.2e-89	92.4
ARB85422.1\|3587554_3587836_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.6e-33	84.1
ARB85423.1\|3587868_3587988_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	2.6e-14	89.7
ARB85424.1\|3587980_3590425_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	4.2e-268	69.0
ARB85425.1\|3590439_3590919_+\|tail	phage tail protein	A0A0F7LDE8	Escherichia_phage	1.9e-71	82.9
ARB85426.1\|3590918_3592079_+	hypothetical protein	Q7Y4C6	Escherichia_virus	2.9e-166	78.8
ARB85427.1\|3592162_3592363_+	late control protein B	E5G6Q4	Salmonella_phage	1.6e-16	63.9
3592531:3592581	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4205188 : 4317679

136

Salmonella_phage(20.0%)

plate,tail,head,lysis,transposase,terminase,integrase,capsid,portal,holin

attL 4269896:4269941|attR 4317711:4317756

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARB85913.1\|4205188_4205425_+\|transposase	IS6 family transposase	NA	NA	NA	NA
ARB85914.1\|4205848_4206238_+	hypothetical protein	NA	NA	NA	NA
ARB85915.1\|4206654_4206960_+\|holin	holin	NA	NA	NA	NA
ARB85916.1\|4206961_4207351_+	peptidase M15	A0A2I6PFM8	Proteus_phage	2.3e-35	54.9
ARB85917.1\|4207347_4207686_+	hypothetical protein	NA	NA	NA	NA
ARB85918.1\|4208248_4208659_+	hypothetical protein	NA	NA	NA	NA
ARB85919.1\|4208872_4210123_+	hypothetical protein	NA	NA	NA	NA
ARB85920.1\|4210197_4211478_+	thermolabile hemolysin	NA	NA	NA	NA
ARB85921.1\|4211784_4212711_-	transcriptional regulator MelR	NA	NA	NA	NA
ARB85922.1\|4212981_4214331_+	alpha-glucosidase/alpha-galactosidase	NA	NA	NA	NA
ARB85923.1\|4214420_4215842_+	melibiose:sodium transporter MelB	NA	NA	NA	NA
ARB85924.1\|4215844_4216099_+	hypothetical protein	NA	NA	NA	NA
ARB86810.1\|4216495_4218049_+	YjjI family glycine radical enzyme	NA	NA	NA	NA
ARB85925.1\|4218020_4218890_+	YjjW family glycine radical enzyme activase	NA	NA	NA	NA
ARB85926.1\|4219516_4221805_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	4.2e-60	31.3
ARB85927.1\|4222146_4222671_+\|integrase	integrase	A0A0M4R586	Salmonella_phage	1.0e-62	65.7
ARB85928.1\|4223938_4224268_+	hypothetical protein	NA	NA	NA	NA
ARB85929.1\|4224634_4225555_+	hypothetical protein	NA	NA	NA	NA
ARB85930.1\|4225929_4226586_+	hypothetical protein	NA	NA	NA	NA
ARB85931.1\|4226586_4226835_-	hypothetical protein	NA	NA	NA	NA
ARB85932.1\|4228790_4229246_+	hypothetical protein	G9L674	Escherichia_phage	1.1e-47	66.0
ARB85933.1\|4229247_4230279_+	serine/threonine protein kinase	D2X3B9	Enterobacteria_phage	2.4e-84	48.9
ARB86812.1\|4230480_4230690_-	fumarate hydratase FumD	NA	NA	NA	NA
ARB85934.1\|4230790_4231426_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	6.0e-33	42.5
ARB86813.1\|4231425_4232565_-	hypothetical protein	K7P7Q7	Enterobacteria_phage	3.1e-32	46.2
ARB85935.1\|4233010_4233607_-	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	3.0e-34	40.1
ARB85936.1\|4233603_4234740_-\|plate	phage baseplate protein	A0A1E1GE19	Vibrio_phage	1.7e-09	28.0
ARB85937.1\|4234743_4235181_-	hypothetical protein	A0A0C4UR04	Shigella_phage	2.0e-19	45.4
ARB85938.1\|4235177_4235771_-\|plate	baseplate assembly protein	A0A077KAY0	Edwardsiella_phage	2.0e-06	35.2
ARB85939.1\|4235767_4236841_-\|tail	phage tail protein	M1PVV2	Vibrio_phage	5.0e-40	30.3
ARB85940.1\|4236837_4238244_-	hypothetical protein	A0A192Y5U9	Salmonella_phage	3.0e-24	28.3
ARB85941.1\|4238301_4240104_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.1e-23	49.2
ARB85942.1\|4240221_4240524_-\|tail	phage tail assembly protein	NA	NA	NA	NA
ARB85943.1\|4240525_4240900_-\|tail	phage tail protein	NA	NA	NA	NA
ARB85944.1\|4240912_4242403_-\|tail	phage tail protein	B5TK67	Pseudomonas_phage	6.0e-100	43.3
ARB85945.1\|4242402_4242594_-	DUF2635 domain-containing protein	NA	NA	NA	NA
ARB85946.1\|4242598_4243144_-	ATP-binding protein	NA	NA	NA	NA
ARB85947.1\|4243140_4243485_-	hypothetical protein	NA	NA	NA	NA
ARB85948.1\|4243484_4243892_-	hypothetical protein	NA	NA	NA	NA
ARB85949.1\|4243893_4244940_-\|capsid	major capsid protein	Q6UYI3	Burkholderia_phage	1.4e-39	31.8
ARB85950.1\|4245049_4245451_-\|head	head decoration protein	A0A067ZIL6	Vibrio_phage	8.2e-12	37.2
ARB85951.1\|4245450_4246035_-	DNA primase	NA	NA	NA	NA
ARB85952.1\|4246034_4246892_-	S49 family peptidase	K7P7A7	Enterobacteria_phage	3.0e-51	39.5
ARB85953.1\|4246888_4248457_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	7.0e-99	38.5
ARB85954.1\|4248525_4248789_-\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
ARB86814.2\|4248797_4250777_-\|terminase	terminase	G8EXZ6	Synechococcus_phage	3.1e-136	46.0
ARB85955.1\|4250745_4251357_-	RNA polymerase subunit sigma-70	NA	NA	NA	NA
ARB85956.1\|4251468_4251993_-	Fis family transcriptional regulator	A0A1W6DY33	Salmonella_phage	1.7e-33	48.8
ARB85957.1\|4252069_4252714_-	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	2.6e-07	30.9
ARB85958.1\|4253061_4253343_-	hypothetical protein	G8C7W3	Escherichia_phage	3.7e-35	76.3
ARB86815.1\|4253375_4253876_-	DUF2514 domain-containing protein	Q7Y3V2	Yersinia_phage	5.2e-72	86.1
ARB85959.1\|4253893_4254289_-	peptidase M15	K0NZV5	Escherichia_virus	5.9e-39	65.1
ARB85960.1\|4254278_4254617_-\|holin	phage holin, lambda family	A0A0N7CER3	Salmonella_phage	7.9e-16	47.1
AVI44496.1\|4254890_4255388_+	hypothetical protein	NA	NA	NA	NA
AVI44497.1\|4255821_4256028_+	hypothetical protein	NA	NA	NA	NA
ARB85961.1\|4256143_4256560_-	hypothetical protein	NA	NA	NA	NA
ARB85962.1\|4258402_4258828_-	antitermination protein	S5M7R9	Escherichia_phage	9.5e-35	57.1
AVI44498.1\|4259089_4260139_-	hypothetical protein	A0A1B5FPA6	Escherichia_phage	8.6e-69	50.5
ARB85963.1\|4260190_4262866_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.4e-232	48.9
ARB85964.1\|4262862_4263258_-	hypothetical protein	NA	NA	NA	NA
ARB85965.1\|4263371_4263575_-	hypothetical protein	NA	NA	NA	NA
ARB85966.1\|4263577_4263748_-	DUF4222 domain-containing protein	NA	NA	NA	NA
ARB85967.1\|4263725_4263923_-	hypothetical protein	NA	NA	NA	NA
ARB85968.1\|4263915_4264710_-	phage antirepressor Ant	F1C5A3	Cronobacter_phage	1.2e-41	44.3
ARB86816.1\|4264702_4264999_-	transcriptional regulator	NA	NA	NA	NA
ARB85969.1\|4265153_4266230_-	hypothetical protein	NA	NA	NA	NA
ARB85970.1\|4266226_4266739_-	hypothetical protein	NA	NA	NA	NA
ARB85971.1\|4266847_4267054_-	AlpA family transcriptional regulator	NA	NA	NA	NA
ARB85972.1\|4267163_4268168_-	hypothetical protein	NA	NA	NA	NA
ARB85973.1\|4268543_4269731_-	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	2.3e-131	57.0
4269896:4269941	attL	NA	NA	NA	NA
ARB85974.1\|4270228_4272064_+	acyltransferase	A0A193GZ69	Enterobacter_phage	1.1e-63	31.9
ARB85975.1\|4272120_4274163_-	hypothetical protein	A0A291AXF7	Shigella_phage	8.4e-44	58.0
ARB86817.1\|4274220_4276584_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	8.6e-218	49.6
ARB85976.1\|4276702_4277095_-	peptidoglycan endopeptidase	F1C5F2	Cronobacter_phage	2.6e-31	46.8
ARB85977.1\|4277130_4277601_-	DUF1833 domain-containing protein	B1GS46	Salmonella_phage	3.0e-37	46.8
ARB85978.1\|4277600_4278074_-	hypothetical protein	B1GS45	Salmonella_phage	3.2e-47	54.2
ARB85979.1\|4278070_4281334_-	hypothetical protein	A0A1W6JNU2	Morganella_phage	1.9e-154	40.0
ARB85980.2\|4281364_4281742_-	hypothetical protein	NA	NA	NA	NA
ARB85981.1\|4281802_4282483_-	hypothetical protein	A0A1W6JNX2	Morganella_phage	1.5e-66	54.4
ARB85982.1\|4282535_4283279_-	DNA breaking-rejoining protein	G0ZNE6	Cronobacter_phage	8.5e-55	53.0
ARB85983.1\|4283335_4283710_-	hypothetical protein	NA	NA	NA	NA
ARB85984.1\|4283706_4284078_-	hypothetical protein	G0ZNE3	Cronobacter_phage	8.3e-35	63.3
ARB85985.1\|4284079_4284421_-	hypothetical protein	A0A1B1W262	Salmonella_phage	1.3e-18	48.5
ARB85986.2\|4284430_4284649_-	hypothetical protein	NA	NA	NA	NA
ARB85987.1\|4284654_4284825_-	DUF551 domain-containing protein	Q5G8X7	Enterobacteria_phage	3.0e-16	55.6
ARB85988.1\|4284824_4285223_-	hypothetical protein	G0ZNE1	Cronobacter_phage	1.4e-59	81.8
ARB85989.1\|4285286_4285472_-	glycoprotein	Q5G8X9	Enterobacteria_phage	9.2e-11	58.7
ARB85990.1\|4285482_4286580_-	hypothetical protein	J7I0Q9	Pseudomonas_phage	1.2e-150	71.9
ARB85991.1\|4286590_4287031_-	hypothetical protein	A0A125RNM2	Pseudomonas_phage	1.6e-40	62.8
ARB85992.1\|4287030_4288308_-	hypothetical protein	G0ZND7	Cronobacter_phage	9.1e-190	78.3
ARB85993.1\|4288311_4289235_-\|head	phage head morphogenesis protein	Q5G8Y3	Enterobacteria_phage	3.6e-103	63.9
ARB85994.1\|4289194_4290565_-	DUF1073 domain-containing protein	H6WRT0	Salmonella_phage	8.0e-184	73.1
ARB85995.1\|4290762_4292082_-\|terminase	PBSX family phage terminase large subunit	Q5G8Y7	Enterobacteria_phage	3.0e-236	89.7
ARB85996.1\|4292065_4292533_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.8e-55	72.5
ARB86818.2\|4292566_4293202_-	hypothetical protein	I6S676	Salmonella_phage	1.8e-85	70.9
ARB85997.1\|4293552_4294128_-	hypothetical protein	A0A0H4IQ87	Shigella_phage	3.7e-58	58.8
ARB85998.1\|4294472_4294658_-	hypothetical protein	NA	NA	NA	NA
ARB85999.1\|4294673_4295132_-\|lysis	lysis protein	A5LH84	Enterobacteria_phage	9.0e-23	43.3
ARB86000.1\|4295116_4295629_-	lysozyme	I6PBN2	Cronobacter_phage	1.8e-48	59.9
ARB86819.1\|4295628_4295910_-	hypothetical protein	H6WRZ3	Salmonella_phage	1.1e-18	54.3
ARB86001.1\|4296364_4297189_-	antitermination protein	M9NZB0	Enterobacteria_phage	1.0e-72	50.7
ARB86002.1\|4297185_4297545_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	5.2e-42	69.5
ARB86003.1\|4297541_4297832_-	DUF1364 domain-containing protein	A0A220NQY2	Salmonella_phage	5.7e-39	76.8
ARB86004.1\|4297943_4298612_-	serine/threonine-protein phosphatase	K7PJY0	Enterobacterial_phage	3.5e-76	62.4
ARB86005.1\|4298604_4298991_-	DUF2591 domain-containing protein	A0A2I7QJ87	Vibrio_phage	2.6e-07	37.0
ARB86006.1\|4299085_4299469_-	HNH endonuclease	A0A2R2Z2X9	Escherichia_phage	1.2e-52	76.9
ARB86007.1\|4299465_4299903_-	recombination protein NinB	E5AGF7	Erwinia_phage	3.3e-67	83.4
ARB86008.1\|4299895_4300207_-	hypothetical protein	A0A0A0YR00	Erwinia_phage	6.1e-07	36.6
ARB86820.1\|4300203_4300560_-	DUF551 domain-containing protein	S4TSR6	Salmonella_phage	7.0e-07	36.8
ARB86009.1\|4300910_4301261_-	hypothetical protein	Q7Y3W5	Yersinia_phage	1.7e-45	75.2
ARB86010.1\|4301521_4301716_-	hypothetical protein	NA	NA	NA	NA
ARB86011.1\|4301715_4303119_-	helicase DnaB	A0A0N7C224	Escherichia_phage	1.9e-164	61.7
ARB86012.1\|4303108_4304011_-	DNA replication protein	Q8VNP8	Enterobacteria_phage	1.6e-63	47.2
ARB86013.1\|4304177_4304468_-	hypothetical protein	I6RSP4	Salmonella_phage	4.8e-22	61.9
ARB86014.1\|4304603_4304834_-	transcriptional regulator	Q76H55	Enterobacteria_phage	1.0e-06	47.1
ARB86821.1\|4304992_4305691_+	helix-turn-helix transcriptional regulator	A0A2D1GM27	Escherichia_phage	5.3e-83	63.5
ARB86015.1\|4306022_4306370_+	hypothetical protein	NA	NA	NA	NA
ARB86016.1\|4306997_4307360_+	hypothetical protein	NA	NA	NA	NA
ARB86017.1\|4307409_4307652_+	hypothetical protein	NA	NA	NA	NA
ARB86018.1\|4308199_4308511_+	hypothetical protein	A0A2I7RGU7	Vibrio_phage	2.3e-14	42.6
ARB86019.1\|4308634_4309732_+	hypothetical protein	A0A2H4FRY7	Salmonella_phage	1.5e-10	78.9
ARB86020.1\|4309806_4310196_+	hypothetical protein	NA	NA	NA	NA
ARB86021.1\|4310546_4310795_+	hypothetical protein	NA	NA	NA	NA
ARB86022.1\|4310766_4311447_+	ATP-binding protein	A0A2D1GLT5	Escherichia_phage	1.8e-91	69.5
ARB86023.1\|4311443_4312040_+	DUF669 domain-containing protein	K7PHD7	Enterobacteria_phage	2.7e-43	51.6
ARB86024.1\|4312066_4312333_+	hypothetical protein	NA	NA	NA	NA
ARB86025.1\|4312372_4312576_+	restriction alleviation protein, Lar family	NA	NA	NA	NA
AVI44499.1\|4312585_4312780_+	hypothetical protein	NA	NA	NA	NA
AVI44500.1\|4312779_4313286_+	hypothetical protein	A0A0H4ISY5	Shigella_phage	9.7e-10	45.9
ARB86026.1\|4313285_4314179_+	hypothetical protein	A0A2K9VK66	Klebsiella_phage	4.1e-96	60.4
ARB86823.1\|4314194_4314425_+	hypothetical protein	NA	NA	NA	NA
ARB86027.1\|4314421_4314721_+	hypothetical protein	NA	NA	NA	NA
ARB86028.1\|4314785_4314992_+	hypothetical protein	NA	NA	NA	NA
ARB86029.1\|4314999_4315218_+	hypothetical protein	NA	NA	NA	NA
ARB86030.1\|4315214_4315850_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	1.1e-87	74.0
ARB86031.1\|4316524_4317679_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	6.2e-161	71.1
4317711:4317756	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4344546 : 4353258

Tupanvirus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARB86051.1\|4344546_4345557_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	4.5e-83	47.2
ARB86052.1\|4345616_4346987_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	1.8e-34	28.7
ARB86053.1\|4346999_4348397_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.2e-53	31.0
ARB86054.1\|4348403_4349369_-	GDP-L-fucose synthase	M4R1H4	Synechococcus_phage	8.7e-84	48.9
ARB86055.1\|4349374_4350493_-	GDP-mannose 4,6-dehydratase	M1HXY1	Acanthocystis_turfacea_Chlorella_virus	3.4e-132	63.6
ARB86056.1\|4350489_4351566_-	galactosyltransferase	NA	NA	NA	NA
ARB86057.1\|4351552_4352401_-	alpha-1,2-fucosyltransferase	A0A2H4UUT1	Bodo_saltans_virus	5.0e-11	26.4
ARB86827.1\|4352397_4353258_-	glycosyl transferase	A0A1V0SAH6	Catovirus	2.2e-09	34.8

DBSCAN-SWA_10

4713834 : 4785343

Paramecium_bursaria_Chlorella_virus(40.0%)

plate,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARB86337.1\|4713834_4714587_+\|protease	metalloprotease	NA	NA	NA	NA
ARB86338.1\|4714653_4714977_-	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
ARB86339.1\|4715130_4717110_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
ARB86341.1\|4718399_4719554_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	8.7e-131	63.2
ARB86342.1\|4719611_4720025_-	hypothetical protein	NA	NA	NA	NA
ARB86343.1\|4720034_4720466_-	hypothetical protein	NA	NA	NA	NA
ARB86840.1\|4720462_4720768_-	transcriptional regulator	NA	NA	NA	NA
ARB86344.1\|4720918_4721431_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
ARB86345.1\|4721528_4722236_+	deoxyribonuclease I	NA	NA	NA	NA
ARB86346.1\|4722282_4723014_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
ARB86347.1\|4723039_4723993_+	glutathione synthase	NA	NA	NA	NA
ARB86348.1\|4724526_4725090_+	YqgE/AlgH family protein	NA	NA	NA	NA
ARB86349.1\|4725089_4725512_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
ARB86350.1\|4725694_4726579_+	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	5.3e-80	50.7
ARB86351.1\|4726582_4727707_+	agmatine deiminase	A7RCL2	Paramecium_bursaria_Chlorella_virus	1.8e-96	50.0
ARB86841.1\|4727746_4728811_-	type IV pili twitching motility protein PilT	NA	NA	NA	NA
ARB86352.1\|4728905_4729601_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
ARB86353.1\|4729688_4730510_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
ARB86354.1\|4730638_4731193_+	YggT family protein	NA	NA	NA	NA
ARB86355.1\|4731189_4731480_+	YggU family protein	NA	NA	NA	NA
ARB86356.1\|4731534_4732128_+	XTP/dITP diphosphatase	NA	NA	NA	NA
ARB86357.1\|4732120_4733251_+	YggW family oxidoreductase	NA	NA	NA	NA
ARB86358.1\|4733339_4734080_-	DUF2884 domain-containing protein	NA	NA	NA	NA
ARB86842.1\|4734100_4735018_-	glutaminase	NA	NA	NA	NA
ARB86359.1\|4735154_4735481_-	DUF469 domain-containing protein	NA	NA	NA	NA
ARB86360.1\|4735480_4736200_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
ARB86843.1\|4736477_4737539_+	adenine DNA glycosylase	NA	NA	NA	NA
ARB86361.1\|4737592_4737865_+	oxidative damage protection protein	NA	NA	NA	NA
ARB86844.2\|4737922_4738999_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
ARB86362.1\|4739232_4739982_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
ARB86363.1\|4740052_4742215_-	ornithine decarboxylase SpeF	NA	NA	NA	NA
ARB86366.1\|4745350_4746106_+	carbonic anhydrase	NA	NA	NA	NA
ARB86845.1\|4746570_4747656_+	lipase	NA	NA	NA	NA
ARB86846.1\|4749047_4752644_-	histidine kinase	A0A1V0SGX0	Hokovirus	2.8e-34	33.2
ARB86367.1\|4752648_4753263_-	DNA-binding response regulator	NA	NA	NA	NA
ARB86368.1\|4754258_4754870_+	LuxR family transcriptional regulator	NA	NA	NA	NA
ARB86369.1\|4755921_4756401_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
ARB86370.1\|4756400_4757207_-	ImpE family T6SS protein Cts1E	NA	NA	NA	NA
ARB86371.1\|4757232_4758075_-	TagK domain-containing protein	NA	NA	NA	NA
ARB86372.1\|4758080_4758341_-	hypothetical protein	NA	NA	NA	NA
ARB86373.1\|4763755_4767589_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
ARB86374.1\|4767597_4768995_-	type VI secretion system protein TssL	NA	NA	NA	NA
ARB86375.1\|4768991_4770341_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
ARB86376.1\|4770344_4770899_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
ARB86377.1\|4771073_4771559_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
ARB86378.1\|4771882_4773385_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
ARB86379.1\|4773408_4773933_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
ARB86380.1\|4774040_4774643_-	type 1 fimbrial protein	NA	NA	NA	NA
AVI44512.1\|4774627_4777294_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
ARB86381.1\|4777390_4778191_-	pilus assembly protein	NA	NA	NA	NA
ARB86382.1\|4778302_4778860_-	type 1 fimbrial protein	NA	NA	NA	NA
ARB86383.1\|4779031_4781704_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	1.9e-88	31.3
ARB86384.1\|4782437_4784318_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
ARB86385.1\|4784317_4785343_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage