CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP020437	Bacillus sp. FDAARGOS_235 chromosome, complete genome	0 crisprs	csa3,cas3,DinG,c2c9_V-U4,WYL,DEDDh	5
CP020435	Bacillus sp. FDAARGOS_235 plasmid 3, complete sequence	0 crisprs	NA	0
CP020436	Bacillus sp. FDAARGOS_235 plasmid 2, complete sequence	0 crisprs	cas14j	5
CP020434	Bacillus sp. FDAARGOS_235 plasmid 1, complete sequence	0 crisprs	WYL,cas14k,cas14j,csa3	24

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

391584 : 440602

Bacillus_phage(71.05%)

capsid,integrase,holin,protease,portal,tail,terminase,head

attL 422163:422180|attR 443977:443994

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC28102.1\|391584_392649_-	N-acetylmuramoyl-L-alanine amidase	A0A0A7AQV3	Bacillus_phage	2.1e-192	92.4
ARC28103.1\|392645_392885_-\|holin	holin	A0A0A7AR38	Bacillus_phage	5.0e-33	94.9
ARC28104.1\|392884_393121_-	hypothetical protein	A0A288WG97	Bacillus_phage	5.1e-14	83.3
ARC28105.1\|393182_393557_-	phosphodiesterase	NA	NA	NA	NA
ARC28106.1\|393556_396808_-	hypothetical protein	A0A0U4JID8	Exiguobacterium_phage	2.3e-80	35.3
ARC28107.1\|396818_397604_-\|tail	phage tail family protein	A0A2H4JBY6	uncultured_Caudovirales_phage	5.8e-70	51.4
ARC28108.1\|397600_402484_-\|tail	phage tail protein	A0A2H4JI37	uncultured_Caudovirales_phage	0.0e+00	86.1
ARC28109.1\|402647_403022_-	hypothetical protein	A0A2H4JBU8	uncultured_Caudovirales_phage	8.6e-56	89.5
ARC28110.1\|403082_403652_-\|tail	phage tail protein	A0A2H4JET9	uncultured_Caudovirales_phage	2.5e-91	89.4
ARC28111.1\|403667_404030_-	DUF3168 domain-containing protein	A0A2H4JBW1	uncultured_Caudovirales_phage	9.2e-55	85.8
ARC28112.1\|404026_404464_-	hypothetical protein	A0A2H4JBV5	uncultured_Caudovirales_phage	3.8e-63	77.9
ARC28113.1\|404451_404799_-\|head,tail	head-tail adaptor protein	A0A2H4JHA9	uncultured_Caudovirales_phage	9.1e-52	87.0
ARC28114.1\|404795_405062_-\|head,tail	phage gp6-like head-tail connector protein	A0A1B1P7Q8	Bacillus_phage	1.6e-35	89.7
ARC28115.1\|405070_405271_-	fibronectin type III domain-containing protein	NA	NA	NA	NA
ARC28116.1\|405347_406529_-\|capsid	phage major capsid protein	A0A1B1P7R4	Bacillus_phage	6.0e-204	93.6
ARC28117.1\|406528_407281_-\|protease	Clp protease ClpP	A0A0U3U021	Bacillus_phage	3.3e-131	93.6
ARC28118.1\|407258_408473_-\|portal	phage portal protein	A0A0U3SQF0	Bacillus_phage	9.8e-226	94.3
ARC28119.1\|408488_410261_-\|terminase	terminase large subunit	A0A1B1P7R3	Bacillus_phage	0.0e+00	95.8
ARC28120.1\|410241_410622_-\|terminase	phage terminase small subunit P27 family	A0A1B1P7R2	Bacillus_phage	1.8e-64	97.6
ARC28121.1\|410783_411146_-	HNH endonuclease	A0A1B1P8D2	Bacillus_phage	3.1e-50	80.0
ARC28122.1\|411138_411354_-	hypothetical protein	NA	NA	NA	NA
ARC28123.1\|411790_413242_+	hypothetical protein	NA	NA	NA	NA
ARC28124.1\|413564_414359_+	FRG domain-containing protein	NA	NA	NA	NA
ARC28125.1\|414480_415023_-\|integrase	site-specific integrase	A0A1B1P7Y2	Bacillus_phage	8.0e-87	88.3
ARC28126.1\|415019_415493_-	ArpU family transcriptional regulator	A0A1B1P7X5	Bacillus_phage	1.8e-74	90.4
ARC28127.1\|415516_415687_-	hypothetical protein	A0A1B0T6D0	Bacillus_phage	4.2e-10	78.6
ARC28128.1\|415803_416001_-	hypothetical protein	NA	NA	NA	NA
ARC28129.1\|416304_416991_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
ARC28130.1\|417246_417531_+	DUF4183 domain-containing protein	NA	NA	NA	NA
ARC28131.1\|419034_419823_+	RNA methyltransferase	A0A288WG17	Bacillus_phage	6.2e-96	64.1
422163:422180	attL	NA	NA	NA	NA
ARC28132.1\|422929_423394_-	nucleotide pyrophosphohydrolase	A0A0U4IBD0	Bacillus_phage	2.5e-20	47.4
ARC28133.1\|423409_423838_-	hypothetical protein	A0A1Z1LZQ8	Bacillus_phage	3.2e-06	35.7
ARC28134.1\|423850_424105_-	hypothetical protein	A0A0U3SU43	Bacillus_phage	3.6e-37	89.3
ARC28135.1\|424119_424293_-	DUF3954 domain-containing protein	A0A1B1P7U5	Bacillus_phage	2.8e-25	94.7
ARC28136.1\|424319_424514_-	hypothetical protein	A0A1B1P7U7	Bacillus_phage	3.7e-26	89.1
ARC28137.1\|424516_425380_-	hypothetical protein	A0A1B0T6C3	Bacillus_phage	1.8e-101	70.8
ARC28138.1\|425321_426185_-	replication protein	V5UQV4	Oenococcus_phage	2.2e-38	40.5
ARC28139.1\|426190_426367_-	hypothetical protein	A0A1B1P7U0	Bacillus_phage	2.1e-20	79.3
ARC28140.1\|426396_426561_-	hypothetical protein	A0A1B1P8G4	Bacillus_phage	5.0e-16	85.4
ARC28141.1\|426560_426827_-	DNA-binding protein	A0A0U3ULL9	Bacillus_phage	2.2e-37	94.1
ARC28142.1\|427050_427323_-	XRE family transcriptional regulator	NA	NA	NA	NA
ARC28143.1\|427487_427835_+	XRE family transcriptional regulator	S5MUA5	Brevibacillus_phage	5.1e-10	38.3
ARC32766.1\|427845_428028_-	hypothetical protein	NA	NA	NA	NA
ARC32767.1\|428319_429447_-	hypothetical protein	H0UST6	Bacillus_phage	5.3e-109	52.1
ARC28144.1\|430115_431225_+\|integrase	site-specific integrase	A0A0U3U8Y8	Bacillus_phage	6.4e-147	78.4
ARC28145.1\|431293_431962_-	DUF3962 domain-containing protein	NA	NA	NA	NA
AVI60572.1\|432243_432444_+	hypothetical protein	NA	NA	NA	NA
ARC28146.1\|432757_432967_+	hypothetical protein	NA	NA	NA	NA
ARC28147.1\|433572_434076_-	hypothetical protein	NA	NA	NA	NA
ARC28148.1\|434573_435410_-	exosporium leader peptide-containing protein	NA	NA	NA	NA
ARC28149.1\|436023_436260_-	hypothetical protein	A0A2H4JHE9	uncultured_Caudovirales_phage	7.9e-23	79.1
ARC28150.1\|436205_437411_-\|terminase	terminase	A0A0U4B089	Bacillus_phage	5.8e-69	59.4
ARC28151.1\|437764_439729_-\|protease	M6 family metalloprotease domain-containing protein	NA	NA	NA	NA
ARC28152.1\|440059_440602_-\|integrase	site-specific integrase	W8CYP1	Bacillus_phage	7.3e-88	90.0
443977:443994	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2608142 : 2616517

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC30153.1\|2608142_2608730_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.9e-27	36.4
ARC30154.1\|2608726_2609767_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	1.2e-67	45.6
ARC30155.1\|2609871_2611287_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.3e-55	35.4
ARC30156.1\|2611271_2613491_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.8e-162	41.3
ARC30157.1\|2613474_2614158_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
ARC30158.1\|2614154_2614409_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
ARC30159.1\|2614401_2615121_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	3.0e-49	44.3
ARC30160.1\|2615209_2616517_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.9e-21	25.5

DBSCAN-SWA_3

3808451 : 3816124

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC31284.1\|3808451_3809435_+	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	27.2
ARC31285.1\|3809424_3810195_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.7e-13	28.6
ARC31286.1\|3810227_3810992_+	SrtB family sortase	NA	NA	NA	NA
ARC31287.1\|3811058_3811382_-	heme-degrading monooxygenase	NA	NA	NA	NA
ARC31288.1\|3811668_3812868_+	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	4.3e-72	41.0
ARC31289.1\|3812907_3813102_-	YwbE family protein	NA	NA	NA	NA
ARC31290.1\|3813102_3813276_-	hypothetical protein	NA	NA	NA	NA
ARC31291.1\|3813444_3814137_+	DNA-binding response regulator	B5LWA6	Feldmannia_species_virus	4.0e-06	27.9
ARC31292.1\|3814138_3815074_+	sensor histidine kinase	W8CYF6	Bacillus_phage	6.3e-23	26.3
ARC31293.1\|3815200_3816124_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.3e-46	43.1

DBSCAN-SWA_4

4596592 : 4654977

Bacillus_phage(28.21%)

capsid,bacteriocin,tRNA,integrase,protease,portal,tail,terminase,head

attL 4589135:4589152|attR 4641504:4641521

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4589135:4589152	attL	NA	NA	NA	NA
ARC32092.1\|4596592_4597546_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
ARC32093.1\|4597567_4597792_+	RNA-binding protein Hfq	NA	NA	NA	NA
ARC32094.1\|4597872_4601625_-	collagen-like repeat preface domain-containing protein	NA	NA	NA	NA
ARC32095.1\|4601738_4602704_-\|integrase	integrase	NA	NA	NA	NA
AVI60642.1\|4602969_4603926_+	stage V sporulation protein K	G3MAX6	Bacillus_virus	1.0e-52	42.7
ARC32098.1\|4604196_4604820_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
AVI60643.1\|4604909_4606187_+	GTPase HflX	NA	NA	NA	NA
ARC32099.1\|4606179_4607451_+	hypothetical protein	NA	NA	NA	NA
ARC32100.1\|4607625_4608015_+	MerR family transcriptional regulator	NA	NA	NA	NA
ARC32101.1\|4608063_4609398_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
ARC32102.1\|4609512_4610658_-\|integrase	site-specific integrase	A0A0M5M609	Bacillus_phage	1.5e-66	38.5
ARC32103.1\|4610699_4610858_-	hypothetical protein	NA	NA	NA	NA
ARC32104.1\|4610874_4611303_-	ImmA/IrrE family metallo-endopeptidase	Q9T201	Bacillus_phage	8.1e-34	55.1
ARC32105.1\|4611325_4611790_-	XRE family transcriptional regulator	S6C481	Thermus_phage	3.2e-28	51.3
ARC32927.2\|4611932_4612202_+	XRE family transcriptional regulator	NA	NA	NA	NA
ARC32106.1\|4612176_4612884_+	Rha family transcriptional regulator	A0A288WFT2	Bacillus_phage	3.5e-50	45.8
ARC32107.1\|4612992_4613259_+	group-specific protein	S5MC08	Brevibacillus_phage	6.6e-26	57.0
ARC32108.1\|4613234_4613420_+	hypothetical protein	NA	NA	NA	NA
ARC32109.1\|4613379_4613727_+	hypothetical protein	NA	NA	NA	NA
ARC32110.1\|4613995_4614622_+	hypothetical protein	Q9MC50	Pseudomonas_phage	2.3e-37	41.1
ARC32111.1\|4614644_4614917_+	hypothetical protein	A0A0M4S680	Bacillus_phage	1.4e-36	80.9
ARC32112.1\|4614913_4615672_+	replication protein	A0A1W6JNI1	Staphylococcus_phage	1.1e-60	54.5
ARC32113.1\|4615607_4616438_+	hypothetical protein	U5PWH5	Bacillus_phage	1.2e-36	38.7
ARC32114.1\|4616454_4616625_+	hypothetical protein	NA	NA	NA	NA
AVI60644.1\|4616621_4617251_+	hypothetical protein	A0A0M4RU33	Bacillus_phage	3.7e-27	41.9
ARC32115.1\|4617253_4617376_+	Fur-regulated basic protein FbpA	NA	NA	NA	NA
ARC32116.1\|4617470_4618043_+	dUTPase	A0A0A7AQI4	Bacillus_phage	1.2e-80	74.3
ARC32117.1\|4618323_4618707_-	hypothetical protein	NA	NA	NA	NA
ARC32118.1\|4619006_4619279_-	hypothetical protein	NA	NA	NA	NA
ARC32119.1\|4619388_4620144_+	DNA (cytosine-5-)-methyltransferase	A0A0K2CYZ1	Paenibacillus_phage	1.0e-63	49.8
ARC32121.1\|4620571_4620859_+	hypothetical protein	A6M999	Geobacillus_virus	3.2e-34	71.3
ARC32122.1\|4620863_4621238_+	ArpU family transcriptional regulator	A0A0M4R397	Bacillus_phage	3.5e-41	67.7
ARC32123.1\|4621425_4623432_-	hypothetical protein	NA	NA	NA	NA
ARC32124.1\|4624009_4624513_+	RNA polymerase subunit sigma-70	A0A1L2JY33	Aeribacillus_phage	4.4e-55	63.5
ARC32125.1\|4624838_4626956_+	DUF2813 domain-containing protein	NA	NA	NA	NA
ARC32126.1\|4626988_4627843_+	TIGR02646 family protein	NA	NA	NA	NA
ARC32127.1\|4628263_4628461_+	hypothetical protein	NA	NA	NA	NA
ARC32128.1\|4628429_4628705_+	DNA-binding protein	A0A2H4JBQ8	uncultured_Caudovirales_phage	1.2e-09	43.8
ARC32129.1\|4628802_4630650_+	hypothetical protein	NA	NA	NA	NA
ARC32130.1\|4630803_4631226_-	HicB family protein	A0A1L2JY34	Aeribacillus_phage	1.3e-39	58.3
ARC32131.1\|4631496_4631658_-	hypothetical protein	NA	NA	NA	NA
ARC32132.1\|4631838_4632453_+	hypothetical protein	NA	NA	NA	NA
ARC32133.1\|4632713_4633028_+	hypothetical protein	NA	NA	NA	NA
ARC32134.1\|4633085_4633292_-	hypothetical protein	NA	NA	NA	NA
ARC32135.1\|4633426_4634020_+	hypothetical protein	L0P6F5	Lactobacillus_phage	6.8e-39	42.7
ARC32136.1\|4634020_4634326_+	HNH endonuclease	A0A1B0YEC6	Lactobacillus_phage	6.9e-19	48.5
ARC32928.1\|4634597_4634972_+	hypothetical protein	R9TQ46	Paenibacillus_phage	2.1e-17	46.7
ARC32137.1\|4634968_4636657_+\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	1.5e-240	70.8
ARC32138.1\|4636672_4637884_+\|portal	phage portal protein	J9QE83	Clostridium_phage	2.2e-137	59.4
ARC32139.1\|4637849_4638434_+\|head,protease	HK97 family phage prohead protease	A0A2I7SBY1	Paenibacillus_phage	4.7e-40	50.5
ARC32140.1\|4638447_4639611_+\|capsid	phage major capsid protein	H7BUQ0	unidentified_phage	5.7e-82	55.1
ARC32141.1\|4639647_4639938_+	hypothetical protein	A6XMJ7	Bacillus_virus	1.4e-05	35.8
ARC32142.1\|4639934_4640213_+	DNA-packaging protein	R9TMB7	Paenibacillus_phage	1.9e-20	56.2
ARC32143.1\|4640209_4640509_+\|head,tail	phage head-tail adapter protein	R9TPZ2	Paenibacillus_phage	1.3e-09	38.3
ARC32144.1\|4640501_4640858_+	hypothetical protein	D2XR21	Bacillus_phage	1.3e-32	60.7
ARC32145.1\|4640854_4641184_+	hypothetical protein	A0A2H4JAG4	uncultured_Caudovirales_phage	7.9e-45	78.0
ARC32146.1\|4641184_4641772_+\|tail	phage tail protein	D2XR23	Bacillus_phage	2.5e-81	77.8
4641504:4641521	attR	NA	NA	NA	NA
ARC32147.1\|4641778_4642141_+	hypothetical protein	A0A2H4JAG8	uncultured_Caudovirales_phage	4.6e-46	75.0
ARC32148.1\|4642368_4643619_+	hypothetical protein	A0A2H4JAI2	uncultured_Caudovirales_phage	3.2e-179	82.3
ARC32149.2\|4643885_4646279_+	hypothetical protein	A0A2H4JC82	uncultured_Caudovirales_phage	5.9e-49	47.3
ARC32150.1\|4646320_4647778_+\|tail	phage tail protein	A0A2H4JH21	uncultured_Caudovirales_phage	1.2e-267	90.5
ARC32151.1\|4647774_4653159_+	hypothetical protein	A0A2H4JF18	uncultured_Caudovirales_phage	0.0e+00	72.5
ARC32152.1\|4653173_4653572_+	hypothetical protein	A0A2H4JGF7	uncultured_Caudovirales_phage	4.2e-69	96.2
ARC32153.1\|4653694_4653925_+\|bacteriocin	bacteriocin biosynthesis protein	A0A2H4JDF0	uncultured_Caudovirales_phage	6.3e-33	98.7
ARC32154.1\|4653921_4654977_+	N-acetylmuramoyl-L-alanine amidase	A0A1B0T6C8	Bacillus_phage	7.1e-164	77.5

DBSCAN-SWA_5

4658982 : 4673222

Bacillus_phage(50.0%)

bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC32157.1\|4658982_4659195_+	DNA-binding protein	A0A1Z1LZP5	Bacillus_phage	1.1e-18	70.0
AVI60646.1\|4659369_4660968_+	hypothetical protein	A0A1S5SA14	Streptococcus_phage	4.5e-77	40.3
ARC32158.1\|4661579_4662239_-	helix-turn-helix domain-containing protein	A0A2H4J441	uncultured_Caudovirales_phage	7.8e-36	41.9
ARC32159.1\|4662441_4662705_+	hypothetical protein	A6M975	Geobacillus_virus	2.8e-13	60.0
ARC32160.1\|4663660_4663855_+	hypothetical protein	A0A2H4J4V8	uncultured_Caudovirales_phage	2.4e-17	71.0
ARC32161.1\|4664003_4664873_+	DnaD domain protein	A0A2H4J394	uncultured_Caudovirales_phage	1.2e-95	58.6
ARC32162.1\|4665270_4665657_+	hypothetical protein	A0A288WG73	Bacillus_phage	6.4e-46	69.8
ARC32163.1\|4665895_4666864_+	lysozyme family protein	A0A223LKM8	Bacillus_phage	2.9e-31	42.8
ARC32164.1\|4667119_4667941_+	M23 family peptidase	A0A218KCJ1	Bacillus_phage	2.1e-22	41.1
ARC32165.1\|4668009_4669005_+	N-acetylmuramoyl-L-alanine amidase	A0A218KCJ1	Bacillus_phage	8.4e-82	49.0
ARC32929.1\|4669176_4669407_+\|bacteriocin	bacteriocin biosynthesis protein	A0A1B1P7Q9	Bacillus_phage	1.0e-19	67.1
ARC32166.1\|4669748_4670489_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
ARC32167.1\|4670437_4671100_+	tyrosine protein kinase	NA	NA	NA	NA
ARC32168.1\|4671395_4673222_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	5.9e-25	30.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP020436

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 9725

Clostridium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27673.1\|497_3326_-	type 2 lantipeptide synthetase LanM	NA	NA	NA	NA
ARC27674.1\|3417_3585_-	type A2 lantipeptide	NA	NA	NA	NA
ARC27675.1\|4818_5424_+	recombinase family protein	M9Q1K0	Clostridium_phage	1.1e-15	30.7
ARC27676.1\|7619_9725_-	peptidase domain-containing ABC transporter	A0A076FI99	Aureococcus_anophage	9.9e-16	23.2

DBSCAN-SWA_2

23826 : 25038

Burkholderia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27716.1\|23826_25038_-	replication initiation protein	E5FFJ0	Burkholderia_phage	1.1e-14	25.2

DBSCAN-SWA_3

30045 : 34498

Bacillus_phage(100.0%)

integrase

attL 26115:26129|attR 40011:40025

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
26115:26129	attL	NA	NA	NA	NA
ARC27692.1\|30045_30972_+\|integrase	site-specific integrase	A0A1B1P793	Bacillus_phage	2.5e-72	46.6
ARC27693.1\|31398_31620_+	hypothetical protein	NA	NA	NA	NA
ARC27694.1\|32157_32412_+	hypothetical protein	NA	NA	NA	NA
ARC27695.1\|32488_33097_-	DUF3967 domain-containing protein	A0A1Z1LZN4	Bacillus_phage	7.7e-46	53.9
ARC27696.1\|33459_33822_+	hypothetical protein	NA	NA	NA	NA
ARC27697.1\|33937_34498_-	XRE family transcriptional regulator	A0A1B1P888	Bacillus_phage	1.2e-05	38.9
40011:40025	attR	NA	NA	NA	NA

DBSCAN-SWA_4

38117 : 43485

Bacillus_phage(71.43%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27701.1\|38117_39230_-\|transposase	transposase	A0A286QQB7	Streptococcus_phage	7.4e-79	45.2
ARC27702.1\|39241_39640_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.5e-50	68.2
ARC27703.1\|39935_40394_-	DUF559 domain-containing protein	NA	NA	NA	NA
ARC27704.1\|40772_40994_+	XRE family transcriptional regulator	A0A0S2GLH4	Bacillus_phage	1.1e-10	49.3
ARC27705.1\|41022_41676_-	hypothetical protein	A0A1B1P7T2	Bacillus_phage	1.4e-77	64.4
ARC27706.1\|41659_42823_-	DNA translocase FtsK	W8CYG2	Bacillus_phage	3.5e-156	70.5
ARC27707.1\|42835_43159_-	hypothetical protein	A0A1B1P7T1	Bacillus_phage	4.8e-31	65.4
ARC27708.1\|43152_43485_-	hypothetical protein	A0A1B1P7T3	Bacillus_phage	1.8e-33	69.2

DBSCAN-SWA_5

47330 : 49942

Staphylococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27713.1\|47330_48236_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.7e-44	42.3
ARC27714.1\|48419_49532_-\|transposase	transposase	A0A288TXV8	Enterococcus_phage	1.7e-78	47.4
ARC27715.1\|49543_49942_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	3.1e-51	68.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP020434

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 4187

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVI60545.1\|900_1179_-	hypothetical protein	NA	NA	NA	NA
ARC27457.1\|1936_3121_-	rod shape-determining protein RodA	NA	NA	NA	NA
ARC27458.1\|3530_4187_-	hypothetical protein	A0A223LKM8	Bacillus_phage	3.4e-15	33.7

DBSCAN-SWA_2

8212 : 8983

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27462.1\|8212_8983_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-32	39.7

DBSCAN-SWA_3

14687 : 15602

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27469.1\|14687_15602_-	YafY family transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	1.5e-08	26.6

DBSCAN-SWA_4

21739 : 24136

Clostridioides_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27475.1\|21739_24136_-	peptidase	A0A1V0E026	Clostridioides_phage	1.5e-63	31.3

DBSCAN-SWA_5

29134 : 31792

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27482.1\|29134_31792_-	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	1.2e-31	26.3

DBSCAN-SWA_6

38546 : 39674

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27489.1\|38546_39674_-	CHAP domain-containing protein	A0A0A0RPZ1	Bacillus_phage	8.7e-27	53.4

DBSCAN-SWA_7

55401 : 57341

Clostridium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27503.1\|55401_55746_+	XRE family transcriptional regulator	A0A0A7RUJ5	Clostridium_phage	8.6e-10	41.7
ARC27504.1\|56210_57341_-	hypothetical protein	D2XQ10	Bacillus_virus	1.3e-59	36.8

DBSCAN-SWA_8

71915 : 74469

Bacillus_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27511.1\|71915_72212_+	hypothetical protein	H0USY0	Bacillus_phage	3.8e-14	44.3
ARC27512.1\|72213_72399_+	hypothetical protein	NA	NA	NA	NA
ARC27513.1\|72498_73680_+	cell division protein FtsK	H0USY1	Bacillus_phage	3.4e-122	54.3
ARC27514.1\|73618_74233_+	hypothetical protein	H0USY2	Bacillus_phage	4.7e-43	44.7
ARC27515.1\|74238_74469_-	XRE family transcriptional regulator	S5MBY6	Brevibacillus_phage	1.1e-13	45.9

DBSCAN-SWA_9

80907 : 82337

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27520.1\|80907_81501_+	DUF4352 domain-containing protein	A0A1B1P898	Bacillus_phage	4.7e-56	91.1
ARC27521.1\|81818_82337_+	DUF4352 domain-containing protein	A0A1B1P898	Bacillus_phage	2.7e-47	75.4

DBSCAN-SWA_10

87421 : 89204

Paenibacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27528.1\|87421_87850_+	stress protein	A0A0K2CZD8	Paenibacillus_phage	2.9e-23	44.2
AVI60551.1\|87882_88074_+	hypothetical protein	NA	NA	NA	NA
AVI60552.1\|88041_89204_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	7.9e-39	39.7

DBSCAN-SWA_11

92608 : 92818

Clostridium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27530.1\|92608_92818_-	hypothetical protein	A0A0A8WI33	Clostridium_phage	1.4e-07	57.4

DBSCAN-SWA_12

106741 : 107911

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27540.2\|106741_107911_-	hypothetical protein	A0A1V0SIY6	Klosneuvirus	1.8e-06	36.7

DBSCAN-SWA_13

112885 : 113581

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27546.1\|112885_113581_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.0e-25	31.8

DBSCAN-SWA_14

118395 : 119304

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27551.1\|118395_119304_+	arginase	A0A1V0SJM8	Klosneuvirus	1.1e-32	34.9

DBSCAN-SWA_15

137352 : 138120

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27564.1\|137352_138120_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-34	40.6

DBSCAN-SWA_16

142840 : 149187

Bacillus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27569.1\|142840_144307_-	catalase	A0A2K9L572	Tupanvirus	2.0e-124	51.4
ARC27570.1\|145936_146218_+	hypothetical protein	NA	NA	NA	NA
ARC27571.1\|146786_147482_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	3.8e-33	38.7
ARC27572.1\|148065_149187_+\|transposase	transposase	S6AND0	Bacillus_phage	8.3e-171	80.2

DBSCAN-SWA_17

154274 : 154901

Planktothrix_phage(100.0%)

bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27576.1\|154274_154901_+\|bacteriocin	bacteriocin ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.5e-24	37.4

DBSCAN-SWA_18

165483 : 172364

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27585.1\|165483_165789_+	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	1.3e-06	37.2
ARC27586.1\|165849_166287_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
ARC27587.1\|166305_167346_+	arsenical-resistance protein	NA	NA	NA	NA
ARC27588.1\|167372_167777_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	7.1e-48	72.2
ARC27652.1\|168258_169002_-	hypothetical protein	NA	NA	NA	NA
ARC27590.1\|169641_170676_+	putative methyltransferase	NA	NA	NA	NA
ARC27591.1\|170696_172364_+	carbamoyl transferase	M1ICZ5	Pelagibacter_phage	2.7e-56	31.3

DBSCAN-SWA_19

175492 : 180579

Brazilian_cedratvirus(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27595.1\|175492_176491_+	ATPase	A0A2R8FG22	Brazilian_cedratvirus	1.6e-16	27.8
ARC27596.1\|176487_177279_+	ABC transporter permease	NA	NA	NA	NA
ARC27597.1\|177281_178070_+	multidrug transporter permease	NA	NA	NA	NA
ARC27598.1\|178082_178748_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.6e-63	54.1
ARC27599.1\|178747_179239_+	6-carboxytetrahydropterin synthase QueD	J9PV91	Bacillus_phage	1.7e-59	70.4
ARC27600.1\|179231_179948_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	3.8e-52	42.5
ARC27601.1\|179991_180579_+	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	7.0e-44	47.6

DBSCAN-SWA_20

201293 : 204417

Mycobacterium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27616.1\|201293_203324_+	penicillin-binding protein	A0A2R4AS58	Mycobacterium_phage	3.9e-09	29.9
ARC27617.1\|203550_204417_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.5e-05	31.2

DBSCAN-SWA_21

211507 : 216318

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27623.2\|211507_212131_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	3.4e-12	29.3
ARC27624.1\|212303_212594_-	hypothetical protein	NA	NA	NA	NA
ARC27626.1\|213882_216318_+	PAS domain S-box protein	A0A2K9L0Z8	Tupanvirus	2.0e-12	26.9

DBSCAN-SWA_22

225434 : 226226

BeAn_58058_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27627.1\|225434_226226_+	carbonic anhydrase	A0A1L3IZL1	BeAn_58058_virus	2.7e-06	27.0

DBSCAN-SWA_23

229546 : 232958

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARC27629.1\|229546_230236_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.8e-27	34.1
ARC27630.1\|230430_230841_+	hypothetical protein	NA	NA	NA	NA
ARC27631.1\|231143_232958_-	acetyltransferase	B5WZU0	Pseudomonas_phage	1.7e-43	33.3

DBSCAN-SWA_24

242815 : 243985

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVI60555.1\|242815_243985_+	D-alanyl-D-alanine carboxypeptidase	A0A1D8EXR7	Mycobacterium_phage	1.8e-22	28.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP020437

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP020436

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP020434

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection