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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP016693 Lactococcus lactis subsp. lactis strain 184 plasmid p184C, complete sequence 0 crisprs NA 0 0 0 0
CP034584 Lactococcus lactis subsp. lactis strain 184 plasmid p184D, complete sequence 0 crisprs NA 0 0 0 0
CP034585 Lactococcus lactis subsp. lactis strain 184 plasmid p184E, complete sequence 0 crisprs NA 0 0 0 0
CP015895 Lactococcus lactis subsp. lactis strain 184 chromosome, complete genome 2 crisprs csa3,cas3,DEDDh,DinG 0 0 13 0
CP034586 Lactococcus lactis subsp. lactis strain 184 plasmid p184F, complete sequence 0 crisprs NA 0 0 0 0
CP016692 Lactococcus lactis subsp. lactis strain 184 plasmid p184B, complete sequence 0 crisprs NA 0 0 0 0
CP016691 Lactococcus lactis subsp. lactis strain 184 plasmid p184A, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP015895
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP015895_1 1311551-1311652 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP015895_2 1872539-1872633 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 35158 : 44129 18 Lactococcus_phage(93.75%) terminase NA
DBSCAN-SWA_2 156989 : 162604 8 Clostridium_phage(25.0%) transposase NA
DBSCAN-SWA_3 191841 : 198379 8 Lactococcus_phage(57.14%) NA NA
DBSCAN-SWA_4 347468 : 363059 23 Lactococcus_phage(94.44%) head,transposase,integrase attL 347347:347371|attR 366315:366339
DBSCAN-SWA_5 477369 : 489500 14 Streptococcus_phage(40.0%) NA NA
DBSCAN-SWA_6 529227 : 567358 56 Lactococcus_phage(96.3%) holin,portal,transposase,terminase,integrase,capsid attL 529138:529165|attR 567853:567880
DBSCAN-SWA_7 586125 : 598608 23 Lactococcus_phage(95.65%) head,protease,integrase attL 586383:586411|attR 600975:601003
DBSCAN-SWA_8 1027634 : 1066468 65 Lactococcus_phage(92.45%) holin,portal,transposase,terminase,integrase,capsid attL 1026375:1026391|attR 1071876:1071892
DBSCAN-SWA_9 1108355 : 1122137 12 Enterococcus_phage(25.0%) NA NA
DBSCAN-SWA_10 1130795 : 1139063 9 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_11 1586457 : 1596758 8 Synechococcus_phage(33.33%) protease NA
DBSCAN-SWA_12 1796099 : 1805958 9 Prochlorococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_13 2034041 : 2048419 21 Lactococcus_phage(94.74%) tRNA,integrase attL 2036202:2036222|attR 2048520:2048540
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage