CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP034583	Lactococcus lactis subsp. lactis strain C10 plasmid pC10C, complete sequence	0 crisprs	csa3	0
CP034582	Lactococcus lactis subsp. lactis strain C10 plasmid pC10B, complete sequence	0 crisprs	NA	0
CP016703	Lactococcus lactis subsp. lactis strain C10 plasmid pC10A, complete sequence	0 crisprs	NA	0
CP015898	Lactococcus lactis subsp. lactis strain C10 chromosome, complete genome	0 crisprs	cas3,DEDDh,csa3,DinG	12

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

35151 : 49354

Lactococcus_phage(100.0%)

integrase,terminase

attL 34543:34570|attR 49463:49490

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
34543:34570	attL	NA	NA	NA	NA
ARE00089.1\|35151_35475_-	prophage protein, hypothetical regulator	Q9AZI1	Lactococcus_phage	3.8e-52	100.0
ARE00090.1\|35499_35910_-	prophage protein	Q9AZI2	Lactococcus_phage	8.0e-71	100.0
ARE00091.1\|35906_36350_-\|terminase	Phage terminase small subunit	Q9AZI3	Lactococcus_phage	7.3e-62	100.0
ARE00092.1\|36473_37055_-	prophage protein	Q9AZI4	Lactococcus_phage	9.8e-99	99.5
ARE00093.1\|37290_38919_-	Phage DNA polymerase (ATPase domain)	Q9AZI5	Lactococcus_phage	0.0e+00	100.0
ARE00094.1\|38929_39724_-	prophage protein	Q9AZI6	Lactococcus_phage	1.9e-153	97.3
ARE00095.1\|39727_40057_-	prophage protein	Q9AZI7	Lactococcus_phage	4.4e-56	98.2
ARE00096.1\|40043_40238_-	prophage protein	Q9AZI8	Lactococcus_phage	2.3e-28	100.0
ARE00097.1\|40485_40725_-	prophage protein	Q9AZJ0	Lactococcus_phage	4.7e-39	98.7
ARE00098.1\|40767_41049_-	prophage protein	Q9AZJ1	Lactococcus_phage	4.2e-47	98.9
ARE00099.1\|41045_41297_-	Transcriptional regulator xre family	Q9AZJ2	Lactococcus_phage	1.7e-39	100.0
ARE00100.1\|41293_41815_-	prophage protein	Q9AZJ3	Lactococcus_phage	1.5e-93	100.0
ARE00101.1\|41818_42013_-	prophage protein	Q9AZJ4	Lactococcus_phage	7.9e-29	100.0
ARE00102.1\|42088_42829_-	Phage related anti-repressor protein	Q9AZJ5	Lactococcus_phage	9.2e-134	100.0
ARE00103.1\|42857_43055_-	prophage protein	Q9AZJ6	Lactococcus_phage	1.3e-26	100.0
ARE00104.1\|43315_43702_+	Transcriptional regulator xre family	Q9AZJ7	Lactococcus_phage	7.3e-66	100.0
ARE00105.1\|43711_44266_+	prophage protein	Q9AZJ8	Lactococcus_phage	8.1e-111	100.0
ARE00106.1\|44376_44607_+	prophage protein	Q9AZK0	Lactococcus_phage	3.7e-17	100.0
ARE00107.1\|44679_44874_+	prophage protein	Q9AZK1	Lactococcus_phage	1.0e-28	98.4
ARE00108.1\|45025_45268_+	prophage protein	Q9AZK2	Lactococcus_phage	4.6e-34	100.0
ARE00109.1\|45415_45628_+	prophage protein	Q9AZK3	Lactococcus_phage	3.1e-34	100.0
ARE00110.1\|46094_46421_+	prophage protein	NA	NA	NA	NA
ARE00111.1\|47328_47493_+	prophage protein	Q9AZK6	Lactococcus_phage	7.9e-22	100.0
ARE00112.1\|47614_47920_+	prophage protein	Q9AZK7	Lactococcus_phage	8.3e-49	100.0
ARE00113.1\|48169_49354_+\|integrase	phage integrase	Q9AZK8	Lactococcus_phage	5.6e-226	99.7
49463:49490	attR	NA	NA	NA	NA

DBSCAN-SWA_2

259192 : 267488

Enterococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE00317.1\|259192_261436_+	ribonucleoside-triphosphate reductase / ribonucleoside-triphosphate reductase class III catalytic subunit	A0A0C5KKX3	Enterococcus_phage	2.0e-272	63.0
ARE00318.1\|261449_262049_+	ribonucleoside-triphosphate reductase class III activase subunit	A0A0C5K925	Enterococcus_phage	2.1e-51	55.3
ARE00319.1\|262157_262664_-	hypothetical protein	NA	NA	NA	NA
ARE00320.1\|262955_264224_+	enolase	A0A1X9I5Z8	Streptococcus_phage	3.3e-123	56.7
ARE00321.1\|264372_265320_+\|transposase	transposase	H7BVY4	unidentified_phage	3.4e-32	33.0
ARE00322.1\|265602_266436_+	ABC-type cobalt transport system ATPase component	G3M9Y6	Bacillus_virus	1.3e-19	32.1
ARE00323.1\|266621_267488_+	ABC-type cobalt transport system ATPase component	W8CYL7	Bacillus_phage	4.5e-15	32.4

DBSCAN-SWA_3

384012 : 396143

Streptococcus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE00434.1\|384012_384330_+	Thiol-disulfide isomerase and thioredoxin	A0A0K2FIM3	Achromobacter_phage	4.5e-05	30.4
ARE00435.1\|384415_385042_+	EMAP domain	NA	NA	NA	NA
ARE00436.1\|385204_386545_+	NADH oxidase H2O-forming	NA	NA	NA	NA
ARE00437.1\|386634_387024_+	single-stranded DNA-binding protein	A0A0K0MWE1	Streptococcus_phage	1.4e-24	45.0
ARE00438.1\|387143_387428_+	Co-chaperonin GroES (HSP10)	A0A221S386	uncultured_virus	3.1e-13	44.1
ARE00439.1\|387515_389144_+	Chaperonin GroEL (HSP60 family)	A0A219YK78	uncultured_virus	4.9e-156	56.8
ARE00440.1\|389189_390002_-	Metal-dependent hydrolase of the beta-lactamase superfamily I	A0A0C5AJ83	Bacteriophage	3.1e-34	38.1
ARE00441.1\|390172_391615_-	PAS/PAC sensor signal transduction histidine kinase	W8CYF6	Bacillus_phage	1.4e-32	33.0
ARE00442.1\|391607_392309_-	DNA-binding response regulator OmpR family (Rec-wHTH domains)	W8CYM9	Bacillus_phage	1.2e-42	39.7
ARE00443.1\|392486_393122_+	thymidylate kinase	M1PSC7	Streptococcus_phage	5.4e-74	65.0
ARE00444.1\|393254_394115_+	DNA polymerase III delta prime subunit	M1NSC1	Streptococcus_phage	5.0e-67	45.2
ARE00445.1\|394166_394949_+	Phosphorelay inhibitor	NA	NA	NA	NA
ARE00446.1\|394941_395268_+	Regulator of replication initiation timing	NA	NA	NA	NA
ARE00447.1\|395267_396143_+	methyltransferase	M1PLC5	Streptococcus_phage	8.7e-99	65.4

DBSCAN-SWA_4

454051 : 467524

Lactococcus_phage(92.0%)

protease,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE00497.1\|454051_454327_+	bacterial nucleoid protein Hbs	A7KV42	Bacillus_phage	1.6e-22	67.4
ARE00498.1\|454436_455585_-	Integrase	Q9AZF9	Lactococcus_phage	7.1e-210	99.7
ARE00499.1\|455708_456200_-	prophage protein	Q9AZF8	Lactococcus_phage	3.7e-83	100.0
ARE00500.1\|456253_456550_-	prophage protein	Q9AZF7	Lactococcus_phage	3.3e-50	100.0
ARE00501.1\|456596_457184_-	prophage protein	Q9AZF6	Lactococcus_phage	3.6e-109	100.0
ARE00502.1\|457195_457564_-	Transcriptional regulator xre family	Q9AZF5	Lactococcus_phage	1.8e-66	100.0
ARE00503.1\|457857_458049_+	prophage protein	Q9AZF4	Lactococcus_phage	8.6e-28	100.0
ARE00504.1\|458064_458325_+	prophage protein	Q9AZF3	Lactococcus_phage	8.6e-47	100.0
ARE00505.1\|458484_458679_+	prophage protein	Q9AZF2	Lactococcus_phage	3.3e-27	92.2
ARE00506.1\|458682_459207_+	prophage protein	Q9AZJ3	Lactococcus_phage	7.8e-63	70.3
ARE00507.1\|459203_459485_+	prophage protein	Q9AZJ1	Lactococcus_phage	3.6e-46	94.6
ARE00508.1\|459527_459767_+	prophage protein	Q9AZJ0	Lactococcus_phage	7.4e-37	93.7
ARE00509.1\|459763_460018_+	prophage protein	Q9AZE9	Lactococcus_phage	1.7e-39	91.7
ARE00510.1\|460014_460209_+	prophage protein	Q9AZI8	Lactococcus_phage	6.7e-28	98.4
ARE00511.1\|460195_460522_+	prophage protein	Q9AZE7	Lactococcus_phage	1.6e-53	98.1
ARE00512.1\|460529_461108_+	prophage protein	Q9AZE6	Lactococcus_phage	1.1e-86	92.2
ARE00513.1\|461100_462543_+	prophage protein	Q9AZE5	Lactococcus_phage	9.7e-273	97.1
ARE00514.1\|462848_463250_+	prophage protein	Q9AZI4	Lactococcus_phage	5.1e-30	56.8
ARE00515.1\|463405_463591_+	prophage protein	Q9AZE3	Lactococcus_phage	5.1e-25	95.1
ARE00516.1\|463616_464225_+	prophage protein	Q9AZE2	Lactococcus_phage	1.6e-96	95.0
ARE00517.1\|464233_464824_+\|head,protease	prohead protease	Q9AZE1	Lactococcus_phage	2.1e-104	96.9
ARE00518.1\|465037_465367_+	prophage protein	Q9AZE0	Lactococcus_phage	4.3e-51	94.5
ARE00519.1\|465467_465788_+	prophage protein	Q9AZD9	Lactococcus_phage	3.5e-50	96.2
ARE00520.1\|466154_466835_-	Transposase	A0A1X9I6C6	Streptococcus_phage	5.5e-109	84.1
ARE00521.1\|467344_467524_+	hypothetical protein	Q9AZG2	Lactococcus_phage	6.8e-19	87.9

DBSCAN-SWA_5

938726 : 952511

Enterococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE00959.1\|938726_939419_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	2.7e-31	34.4
ARE00960.1\|939411_940347_+	cell division protein ftsX-like protein	NA	NA	NA	NA
ARE00961.1\|940448_941426_-	ribonucleoside-diphosphate reductase class Ib beta subunit	A0A096XT60	Enterococcus_phage	2.4e-118	66.2
ARE00962.1\|941775_943944_-	ribonucleoside-diphosphate reductase class Ib alpha subunit	A8E2R1	Enterococcus_phage	3.0e-257	61.1
ARE00963.1\|944079_944502_-	Ribonucleotide reduction protein	A0A142F1R4	Bacillus_phage	2.3e-12	37.3
ARE00964.1\|944503_944722_-	ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit	C3U2K9	Lactococcus_phage	7.6e-12	47.6
ARE00965.1\|944895_945537_-	acyl-phosphate glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
ARE00966.1\|945811_947746_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	5.4e-125	43.4
ARE00967.1\|947950_948490_+	isochorismatase	NA	NA	NA	NA
ARE00968.1\|948482_949316_+	DNA polymerase III epsilon subunit related 3-5 exonuclease	A0A0K2SUJ2	Clostridium_phage	3.1e-21	39.4
ARE00969.1\|949312_949762_+	Acetyltransferase GNAT family	NA	NA	NA	NA
ARE00970.1\|950036_952511_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	4.2e-98	32.2

DBSCAN-SWA_6

961169 : 1014036

Lactococcus_phage(81.82%)

head,terminase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE00979.1\|961169_962258_+	riboflavin biosynthesis protein RibD	A0A1V0SE20	Indivirus	1.7e-51	39.1
ARE00980.1\|962257_962908_+	Riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	1.2e-41	43.6
ARE00981.1\|962916_964113_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.9e-109	50.8
ARE00982.1\|964140_964605_+	Riboflavin synthase beta chain	A0A2H4PQS3	Staphylococcus_phage	1.8e-39	53.7
ARE00983.1\|964707_965160_+	signal peptidase II Aspartic peptidase MEROPS family A08	NA	NA	NA	NA
ARE00984.1\|965220_966126_+	ribosomal large subunit pseudouridine synthase D	A0A2H4UV25	Bodo_saltans_virus	5.4e-11	28.2
ARE00985.1\|966272_966716_+	hypothetical protein	NA	NA	NA	NA
ARE00986.1\|966877_967138_+	Transposase	A0A1P8CWP5	Bacillus_phage	8.4e-10	37.6
ARE00987.1\|967149_967989_+	Transposase	A0A1P8CWQ3	Bacillus_phage	1.6e-49	41.4
ARE00988.1\|968133_969705_+	hypothetical protein	NA	NA	NA	NA
ARE00989.1\|969707_970664_+	Glycosyltransferase	I1TED8	Salmonella_phage	4.0e-49	37.5
ARE00990.1\|970789_971476_+	DNA-binding response regulator OmpR family (Rec-wHTH domains)	W8CYM9	Bacillus_phage	5.5e-32	33.6
ARE00991.1\|971495_972011_+	hypothetical protein	NA	NA	NA	NA
ARE00992.1\|972014_973340_+	Two-component sensor protein kinase	W8CYF6	Bacillus_phage	5.8e-22	27.5
ARE00993.1\|973346_974003_+	Membrane-associated phospholipid phosphatase	NA	NA	NA	NA
ARE00994.1\|974183_976001_+	glucosamine--fructose-6-phosphate aminotransferase	M1HVL7	Paramecium_bursaria_Chlorella_virus	3.5e-94	37.0
ARE00995.1\|976131_976812_+	DNA repair protein RadC	NA	NA	NA	NA
ARE00996.1\|977010_977370_-	Integrase	Q38608	Lactococcus_phage	9.4e-60	99.2
ARE00997.1\|977400_978135_-	Integrase	Q38088	Lactococcus_phage	6.1e-138	100.0
ARE00998.1\|978260_978878_-	prophage protein	Q9T1Z1	Lactococcus_phage	2.0e-113	100.0
ARE00999.1\|978918_979119_-	prophage protein	A0A1P8BMQ1	Lactococcus_phage	3.4e-27	90.9
ARE01000.1\|979130_979694_-	prophage protein	A0A1P8BMR0	Lactococcus_phage	4.8e-58	63.1
ARE01001.1\|979722_980079_-	Transcriptional regulator xre family	Q9AZJ7	Lactococcus_phage	4.7e-27	51.8
ARE01002.1\|980358_980589_+	prophage protein	NA	NA	NA	NA
ARE01003.1\|980602_980938_+	prophage protein	Q9MC19	Lactococcus_phage	1.7e-58	100.0
ARE01004.1\|980934_981063_+	prophage protein	Q9B011	Lactococcus_phage	1.1e-15	100.0
ARE01005.1\|981075_981309_+	prophage protein	A0A059NT46	Lactococcus_phage	1.8e-35	100.0
ARE01006.1\|981263_981542_-	prophage protein	A0A059NT68	Lactococcus_phage	1.1e-47	100.0
ARE01007.1\|981644_981881_+	prophage protein	A5GYQ9	Lactococcus_phage	7.1e-40	100.0
ARE01008.1\|981911_982085_+	prophage protein	A5GYR0	Lactococcus_phage	1.1e-24	100.0
ARE01009.1\|982188_982926_+	prophage protein	A5GYR1	Lactococcus_phage	8.0e-138	100.0
ARE01010.1\|982927_983995_+	prophage protein	A5GYR2	Lactococcus_phage	1.7e-168	100.0
ARE01011.1\|984221_985031_+	prophage protein	Q9MCG3	Lactococcus_phage	1.1e-137	100.0
ARE01012.1\|985011_985233_+	prophage protein	Q9MBX3	Lactococcus_phage	1.1e-34	100.0
ARE01013.1\|985222_985642_+	prophage protein	Q9MCG2	Lactococcus_phage	7.9e-74	100.0
ARE01014.1\|985642_985882_+	prophage protein	Q9MBY5	Lactococcus_phage	6.1e-39	100.0
ARE01015.1\|985987_986512_+	prophage protein	A0A059NT70	Lactococcus_phage	5.5e-93	100.0
ARE01016.1\|986525_986732_+	prophage protein	A0A1P8BL00	Lactococcus_phage	2.4e-31	100.0
ARE01017.1\|986724_987279_+	prophage protein	Q9MC20	Lactococcus_phage	4.1e-102	100.0
ARE01018.1\|987275_987695_+	deoxyuridine 5-triphosphate nucleotidohydrolase	Q9MBX9	Lactococcus_phage	2.3e-73	100.0
ARE01019.1\|987697_988054_+	prophage protein	Q9MCF8	Lactococcus_phage	3.9e-58	100.0
ARE01020.1\|988050_988245_+	prophage protein	Q9MCF7	Lactococcus_phage	4.0e-33	100.0
ARE01021.1\|988237_988600_+	prophage protein	Q9MBV6	Lactococcus_phage	2.5e-68	100.0
ARE01022.1\|988586_989279_+	prophage protein	A0A1P8BL14	Lactococcus_phage	8.0e-132	100.0
ARE01023.1\|989325_989568_+	prophage protein	Q9MCF5	Lactococcus_phage	4.9e-44	100.0
ARE01024.1\|989564_989765_+	prophage protein	A0A1P8BL58	Lactococcus_phage	1.5e-35	100.0
ARE01025.1\|989772_989958_+	prophage protein	Q9MCF3	Lactococcus_phage	5.4e-27	100.0
ARE01026.1\|989954_990140_+	prophage protein	Q9MCF2	Lactococcus_phage	3.7e-28	100.0
ARE01027.1\|990265_990565_+	prophage protein	A0A1B1IMR6	Lactococcus_phage	7.6e-47	97.0
ARE01028.1\|990561_990744_+	prophage protein	Q9AZZ4	Lactococcus_phage	1.6e-28	98.3
ARE01029.1\|990740_991061_+	prophage protein	A0A1P8BL76	Lactococcus_phage	2.9e-44	97.9
ARE01030.1\|991143_991575_+	transcriptional regulator	A0A1B1IMS8	Lactococcus_phage	4.0e-81	100.0
ARE01031.1\|992179_993409_+	prophage protein	O64275	Lactococcus_phage	4.0e-235	99.3
ARE01032.1\|993408_994173_+	prophage protein	A0A1B1IMX1	Lactococcus_phage	2.9e-143	99.6
ARE01033.1\|994223_995633_+\|terminase	terminase	Q38115	Lactococcus_phage	1.2e-278	99.6
ARE01034.1\|995705_996170_+	phage scaffold protein	A0A1P8BMT3	Lactococcus_phage	4.0e-79	100.0
ARE01035.1\|996173_997070_+\|head	prophage protein, major head protein	A0A1P8BKC4	Lactococcus_phage	1.1e-168	99.3
ARE01036.1\|997084_997384_+	prophage protein	A0A1B1IMX7	Lactococcus_phage	4.8e-49	100.0
ARE01037.1\|997385_997784_+	prophage protein	A0A1P8BKC7	Lactococcus_phage	3.4e-66	99.2
ARE01038.1\|997770_998109_+	prophage protein	A0A1P8BKC9	Lactococcus_phage	6.1e-61	100.0
ARE01039.1\|998101_998338_+	prophage protein	A0A1P8BMT2	Lactococcus_phage	4.8e-36	100.0
ARE01040.1\|998338_998674_+	prophage protein	Q38122	Lactococcus_phage	4.2e-54	100.0
ARE01041.1\|998684_999242_+	prophage protein	A0A1P8BKC6	Lactococcus_phage	1.2e-98	99.5
ARE01042.1\|999284_999545_+	prophage protein	A0A1P8BKC2	Lactococcus_phage	4.6e-40	100.0
ARE01043.1\|999691_999934_+	prophage protein	A0A1P8BMT6	Lactococcus_phage	5.2e-38	98.8
ARE01044.1\|999933_1002516_+	TMP, prophage protein	A0A1B1IMY1	Lactococcus_phage	1.3e-262	97.9
ARE01045.1\|1002517_1004056_+	DIT, prophage protein	A0A1P8BKE1	Lactococcus_phage	7.2e-290	98.2
ARE01046.1\|1004055_1008300_+	TAL, prophage protein	A5GYS8	Lactococcus_phage	0.0e+00	82.3
ARE01047.1\|1008311_1008548_+	BPP, prophage protein	A5GYS9	Lactococcus_phage	3.1e-35	100.0
ARE01048.1\|1008560_1008911_+	BPP, prophage protein	A5GYT0	Lactococcus_phage	1.8e-55	100.0
ARE01049.1\|1008923_1009223_+\|holin	phage holin	A5GYT1	Lactococcus_phage	9.9e-47	100.0
ARE01050.1\|1009222_1010002_+	phage lysin	A5GYT2	Lactococcus_phage	4.6e-128	100.0
ARE01051.1\|1010683_1011334_-	AT-rich DNA-binding protein	NA	NA	NA	NA
ARE01052.1\|1011558_1011951_+	Arsenate reductase related protein glutaredoxin family	NA	NA	NA	NA
ARE01053.1\|1012128_1014036_+	ATPase component of ABC transporter	A0A2K9L3Z8	Tupanvirus	2.1e-49	28.9

DBSCAN-SWA_7

1281404 : 1440769

180

Lactococcus_phage(75.0%)

protease,lysis,transposase,integrase,terminase,capsid,head,holin

attL 1379627:1379645|attR 1447846:1447864

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE01301.1\|1281404_1282352_+\|transposase	transposase	H7BVY4	unidentified_phage	3.4e-32	33.0
ARE01302.1\|1282311_1283685_-	acetolactate synthase large subunit	NA	NA	NA	NA
ARE01303.1\|1283819_1284290_+	MarR family transcriptional regulator	NA	NA	NA	NA
ARE01304.1\|1284340_1285162_+	fhu operon transcription regulator	NA	NA	NA	NA
ARE01305.1\|1285202_1285976_-	Alpha/beta hydrolase	NA	NA	NA	NA
ARE01306.1\|1286082_1286280_-	hypothetical protein	NA	NA	NA	NA
ARE01307.1\|1286503_1287316_+	Short chain dehydrogenase	NA	NA	NA	NA
ARE01308.1\|1287332_1288307_+	AraC family transcriptional regulator	NA	NA	NA	NA
ARE01309.1\|1288455_1288992_+	hypothetical protein	NA	NA	NA	NA
ARE01310.1\|1289047_1289371_-	arsenical resistance operon trans-acting repressor arsD	NA	NA	NA	NA
ARE01311.1\|1289429_1289801_-	Arsenate reductase family protein	NA	NA	NA	NA
ARE01312.1\|1289989_1291876_-	anthranilate synthase component I	NA	NA	NA	NA
ARE01313.1\|1291880_1292462_-	anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.1e-36	40.9
ARE01314.1\|1292629_1293571_-	manganese ABC transporter substrate binding protein	NA	NA	NA	NA
ARE01315.1\|1293563_1294409_-	ABC-type Mn2+/Zn2+ transport system permease component	NA	NA	NA	NA
ARE01316.1\|1294416_1295130_-	ABC-type Mn/Zn transport system ATPase component	A0A2R8FG22	Brazilian_cedratvirus	3.6e-18	31.2
ARE01317.1\|1295404_1295818_+	lactoylglutathione lyase	NA	NA	NA	NA
ARE01318.1\|1295898_1296132_-	hypothetical protein	NA	NA	NA	NA
ARE01319.1\|1296259_1299400_-	ATPase for DNA repair	NA	NA	NA	NA
ARE01320.1\|1299402_1300575_-	Exonuclease subunit D	NA	NA	NA	NA
ARE01321.1\|1300726_1301665_-	(R)-2-hydroxyisocaproate dehydrogenase	NA	NA	NA	NA
ARE01322.1\|1301864_1302284_-	Arsenate reductase related protein glutaredoxin family	NA	NA	NA	NA
ARE01323.1\|1303036_1305214_-	hypothetical protein	NA	NA	NA	NA
ARE01324.1\|1305560_1306004_-	hypothetical protein	NA	NA	NA	NA
ARE01325.1\|1306081_1307029_-\|transposase	transposase	H7BVY4	unidentified_phage	3.4e-32	33.0
ARE01326.1\|1307391_1309014_+	Fibronectin-binding protein	Q84500	Paramecium_bursaria_Chlorella_virus	4.2e-06	32.1
ARE01327.1\|1309053_1309455_+	23S rRNA m(1)G 745 methyltransferase	NA	NA	NA	NA
ARE01328.1\|1309515_1309869_+	23S rRNA m(1)G methyltransferase	NA	NA	NA	NA
ARE01329.1\|1310047_1311568_+	purine/cytidine ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.3e-20	32.1
ARE01330.1\|1311560_1312655_+	nucleoside ABC transporter membrane protein	NA	NA	NA	NA
ARE01331.1\|1312651_1313605_+	nucleoside ABC transporter membrane protein	NA	NA	NA	NA
ARE01332.1\|1313722_1314700_-	L-lactate dehydrogenase	NA	NA	NA	NA
ARE01333.1\|1314817_1316326_-	pyruvate kinase	NA	NA	NA	NA
ARE01334.1\|1316413_1317436_-	6-phosphofructokinase	NA	NA	NA	NA
ARE01335.1\|1317821_1318970_-	N-acetylglucosamine 6-phosphate deacetylase	NA	NA	NA	NA
ARE01336.1\|1319142_1320321_-	tellurite resistance protein	A0A291I9K4	Lactobacillus_phage	1.5e-37	28.8
ARE01337.1\|1320465_1321092_-\|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	NA	NA	NA	NA
ARE01338.1\|1321283_1322309_+	glycerol 3-phosphate dehydrogenase (NAD(P)+)	NA	NA	NA	NA
ARE01339.1\|1322352_1323294_+	UDP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	2.2e-79	52.2
ARE01340.1\|1323364_1323772_+	hypothetical protein	NA	NA	NA	NA
ARE01341.1\|1323768_1324299_+	hypothetical protein	NA	NA	NA	NA
ARE01342.1\|1324289_1325249_+	heptaprenyl diphosphate synthase component II	NA	NA	NA	NA
ARE01343.1\|1325245_1325962_+	16S rRNA methyltransferase GidB	NA	NA	NA	NA
ARE01344.1\|1326191_1326443_-	hypothetical protein	NA	NA	NA	NA
ARE01345.1\|1326543_1327833_-	phage lysin	A0A1P8BLG2	Lactococcus_phage	3.0e-241	97.2
ARE01346.1\|1327829_1328096_-\|holin	phage holin	Q38613	Lactococcus_phage	4.3e-41	100.0
ARE01347.1\|1328107_1328335_-\|holin	phage holin	Q38321	Lactococcus_phage	4.3e-34	98.7
ARE01348.1\|1328464_1330483_-	BPP, prophage protein	A0A1P8BM18	Lactococcus_phage	0.0e+00	92.9
ARE01349.1\|1330495_1333177_-	TAL, prophage protein	Q9AZX5	Lactococcus_phage	0.0e+00	96.6
ARE01350.1\|1333173_1333923_-	DIT, prophage protein	Q9AZX6	Lactococcus_phage	4.4e-144	98.4
ARE01351.1\|1333923_1336161_-	TMP, prophage protein	Q9AZX7	Lactococcus_phage	5.4e-169	53.0
ARE01352.1\|1336377_1336737_-	prophage protein	Q9AZX8	Lactococcus_phage	6.5e-61	98.3
ARE01353.1\|1336746_1337358_-	prophage protein	Q9AZX9	Lactococcus_phage	4.8e-104	99.5
ARE01354.1\|1337375_1337693_-	prophage protein	Q9AZY0	Lactococcus_phage	1.1e-51	99.0
ARE01355.1\|1337689_1338070_-	prophage protein	Q9AZY1	Lactococcus_phage	5.7e-47	74.6
ARE01356.1\|1338059_1338377_-	prophage protein	Q9AZY2	Lactococcus_phage	1.2e-47	94.8
ARE01357.1\|1338363_1338645_-	prophage protein	Q9AZY3	Lactococcus_phage	1.9e-44	98.9
ARE01358.1\|1338637_1339495_-	prophage protein	Q9AZY4	Lactococcus_phage	4.9e-163	96.8
ARE01359.1\|1339549_1340743_-\|capsid	prophage protein, capsid protein	Q9AZY5	Lactococcus_phage	1.1e-168	98.0
ARE01360.1\|1340714_1341311_-	prophage protein	Q9AZY6	Lactococcus_phage	3.0e-103	98.5
ARE01361.1\|1341325_1342597_-	prophage protein	Q9AZY7	Lactococcus_phage	1.1e-232	97.6
ARE01362.1\|1342574_1344350_-\|terminase	prophage terminase TerL	Q9AZY8	Lactococcus_phage	0.0e+00	99.3
ARE01363.1\|1344336_1344705_-\|terminase	prophage terminase TerS	Q9AZY9	Lactococcus_phage	1.4e-58	97.5
ARE01364.1\|1345146_1345413_-	prophage protein	NA	NA	NA	NA
ARE01365.1\|1345639_1346062_-	prophage protein	A0A1P8BKU5	Lactococcus_phage	3.6e-74	99.3
ARE01366.1\|1346411_1346585_-	prophage protein	R9QMZ8	Lactococcus_phage	7.8e-28	98.2
ARE01367.1\|1346931_1347288_-	prophage protein	A0A1P8BMB7	Lactococcus_phage	5.7e-57	92.4
ARE01368.1\|1347287_1347917_-	prophage protein	A0A1P8BKG5	Lactococcus_phage	5.2e-37	47.4
ARE01369.1\|1348456_1350742_-	phage replicative helicase	Q5YA88	Bacillus_phage	8.3e-242	56.2
ARE01370.1\|1350744_1352340_-	Excinuclease ABC subunit B	A0A097BY72	Enterococcus_phage	6.7e-206	66.9
ARE01371.1\|1352314_1352575_-	prophage protein	NA	NA	NA	NA
ARE01372.1\|1352587_1353217_-	prophage protein	A0A2I7SC41	Paenibacillus_phage	4.0e-21	40.0
ARE01373.1\|1353236_1354277_-	prophage protein	Q5YA96	Bacillus_phage	1.1e-81	48.8
ARE01374.1\|1354286_1354907_-	prophage protein	A0A1P8BMP7	Lactococcus_phage	5.4e-103	85.9
ARE01375.1\|1354918_1356199_-	prophage protein	A0A097BY67	Enterococcus_phage	3.9e-140	59.9
ARE01376.1\|1356202_1356412_-	transcriptional regulator	Q8LTN5	Lactococcus_phage	2.0e-17	58.0
ARE01377.1\|1356419_1356815_-	prophage protein	NA	NA	NA	NA
ARE01378.1\|1356863_1357118_-	prophage protein	NA	NA	NA	NA
ARE01379.1\|1357122_1357272_-	prophage protein	A0A1P8BLF8	Lactococcus_phage	1.4e-14	79.2
ARE01380.1\|1357281_1357512_-	prophage protein	NA	NA	NA	NA
ARE01381.1\|1357927_1358257_+	Transcriptional regulator xre family	A0A1B0Y3N1	Lactobacillus_phage	8.5e-15	40.0
ARE01382.1\|1358283_1358721_+	prophage protein	NA	NA	NA	NA
ARE01383.1\|1358770_1359370_+	prophage protein	NA	NA	NA	NA
ARE01384.1\|1359488_1360928_+\|integrase	integrase	Q38184	Lactococcus_phage	7.8e-113	45.8
ARE01385.1\|1360947_1361658_-	orotidine-5-phosphate decarboxylase	NA	NA	NA	NA
ARE01386.1\|1361807_1362743_-	dihydroorotate dehydrogenase 1B	NA	NA	NA	NA
ARE01387.1\|1362815_1363604_-	Dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA
ARE01388.1\|1364138_1365503_-	Multidrug resistance protein B MF superfamily	NA	NA	NA	NA
ARE01389.1\|1365879_1367091_+	hypothetical protein	NA	NA	NA	NA
ARE01390.1\|1367250_1368390_+	hypothetical protein	NA	NA	NA	NA
ARE01391.1\|1368386_1369172_+	hypothetical protein	NA	NA	NA	NA
ARE01392.1\|1369201_1369759_-	ribosomal large subunit pseudouridine synthase E	NA	NA	NA	NA
ARE01393.1\|1370076_1371240_-	cell surface protein	NA	NA	NA	NA
ARE01394.1\|1371317_1372130_-	hypothetical protein	NA	NA	NA	NA
ARE01395.1\|1372104_1372449_-	hypothetical protein	NA	NA	NA	NA
ARE01396.1\|1372495_1373500_-	cell surface protein	NA	NA	NA	NA
ARE01397.1\|1373511_1375482_-	hypothetical protein	NA	NA	NA	NA
ARE01398.1\|1375494_1376076_-	hypothetical protein	NA	NA	NA	NA
ARE01399.1\|1376272_1379467_-	Carbamoyl-phosphate synthase large chain	NA	NA	NA	NA
1379627:1379645	attL	NA	NA	NA	NA
ARE01400.1\|1379793_1380684_-	Transposase	NA	NA	NA	NA
ARE01401.1\|1380786_1381260_-	Glutathione peroxidase	NA	NA	NA	NA
ARE01402.1\|1381442_1382072_+	Surface antigen	A0A0K2CP65	Brevibacillus_phage	1.5e-28	46.3
ARE01403.1\|1382113_1384750_-	Calcium-transporting ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	4.5e-90	30.8
ARE01404.1\|1385007_1385730_-	hypothetical protein	NA	NA	NA	NA
ARE01405.1\|1385950_1386520_-	hypothetical protein	NA	NA	NA	NA
ARE01406.1\|1386660_1387476_-	hypothetical protein	NA	NA	NA	NA
ARE01407.1\|1387986_1388382_+	hypothetical protein	NA	NA	NA	NA
ARE01408.1\|1388470_1389418_+\|transposase	transposase	H7BVY4	unidentified_phage	3.4e-32	33.0
ARE01409.1\|1389804_1390563_+	hypothetical protein	NA	NA	NA	NA
ARE01410.1\|1390628_1390982_-	hypothetical protein	NA	NA	NA	NA
ARE01411.1\|1391078_1391507_-	Universal stress protein UspA related nucleotide-binding protein	NA	NA	NA	NA
ARE01412.1\|1391626_1391788_-	hypothetical protein	NA	NA	NA	NA
ARE01413.1\|1391817_1392219_-	Protein-tyrosine-phosphatase	A0A2H4PQT9	Staphylococcus_phage	2.4e-27	48.8
ARE01414.1\|1393434_1394274_-	Transposase	A0A1P8CWQ3	Bacillus_phage	1.1e-50	41.8
ARE01415.1\|1394285_1394546_-\|transposase	IS981 transposase A	A0A1P8CWP5	Bacillus_phage	2.5e-09	37.6
ARE01416.1\|1395412_1395943_-	hypothetical protein	NA	NA	NA	NA
ARE01417.1\|1395989_1396880_-	Transposase	NA	NA	NA	NA
ARE01418.1\|1397294_1398242_+\|transposase	transposase	H7BVY4	unidentified_phage	3.4e-32	33.0
ARE01419.1\|1399587_1400877_-	phage lysin	A5GYL4	Lactococcus_phage	1.2e-242	98.4
ARE01420.1\|1400873_1401140_-\|holin	phage holin	Q38613	Lactococcus_phage	4.3e-41	100.0
ARE01421.1\|1401136_1401379_-	prophage protein	A5GYL2	Lactococcus_phage	1.5e-37	100.0
ARE01422.1\|1401391_1401628_-	prophage protein	A5GYN1	Lactococcus_phage	4.0e-35	100.0
ARE01423.1\|1401639_1405617_-	prophage protein TAL	A5GYS8	Lactococcus_phage	0.0e+00	57.7
ARE01424.1\|1405616_1407161_-	prophage protein DIT	Q9AZL3	Lactococcus_phage	2.3e-235	81.1
ARE01425.1\|1407163_1410967_-	prophage protein TMP	Q9AZL5	Lactococcus_phage	0.0e+00	100.0
ARE01426.1\|1411173_1411281_-	prophage protein	Q9AZL6	Lactococcus_phage	1.0e-06	100.0
ARE01427.1\|1411341_1411518_-	prophage protein	Q9AZL6	Lactococcus_phage	1.1e-16	100.0
ARE01428.1\|1411577_1412183_-	prophage protein	Q9AZL7	Lactococcus_phage	4.9e-109	100.0
ARE01429.1\|1412221_1412581_-	prophage protein	Q9AZL8	Lactococcus_phage	1.1e-60	100.0
ARE01430.1\|1413384_1413690_-	prophage protein	Q9AZM1	Lactococcus_phage	4.4e-50	100.0
ARE01431.1\|1413700_1415014_-\|capsid	prophage protein, capsid protein	Q9AZM2	Lactococcus_phage	1.9e-198	99.5
ARE01432.1\|1415003_1415591_-\|head,protease	prophage protein, prohead protease	Q9AZM3	Lactococcus_phage	4.4e-107	100.0
ARE01433.1\|1415590_1416733_-	prophage protein	Q9AZM4	Lactococcus_phage	2.0e-135	100.0
ARE01434.1\|1416803_1417121_-\|terminase	terminase TerL	Q9AZM6	Lactococcus_phage	6.6e-49	97.1
ARE01435.1\|1417234_1417435_-\|terminase	terminase TerS	Q9AZM6	Lactococcus_phage	2.4e-20	94.0
ARE01436.1\|1417434_1417887_-\|terminase	terminase small subunit	Q9AZM7	Lactococcus_phage	6.5e-82	99.3
ARE01437.1\|1418003_1418468_-	prophage protein	Q9AZM8	Lactococcus_phage	1.8e-82	97.4
ARE01438.1\|1418512_1418749_-	prophage protein	F0PII8	Enterococcus_phage	2.6e-18	85.2
ARE01439.1\|1419037_1419460_-	prophage protein	Q9AZM9	Lactococcus_phage	1.6e-50	99.3
ARE01440.1\|1419536_1419845_-	prophage protein	A0A1P8BKI6	Lactococcus_phage	9.6e-45	92.2
ARE01441.1\|1420183_1420393_+	prophage protein	NA	NA	NA	NA
ARE01442.1\|1420445_1420631_-	prophage protein	Q9AZN6	Lactococcus_phage	1.6e-26	100.0
ARE01443.1\|1420638_1421130_-	prophage protein	Q38109	Lactococcus_phage	1.8e-85	98.2
ARE01444.1\|1421138_1421369_-	prophage protein	NA	NA	NA	NA
ARE01445.1\|1421547_1421790_-	prophage protein	Q9MCF5	Lactococcus_phage	4.9e-44	100.0
ARE01446.1\|1421993_1422368_-	prophage protein	A0A1P8BKY9	Lactococcus_phage	1.1e-29	61.8
ARE01447.1\|1422360_1422624_-	prophage protein	NA	NA	NA	NA
ARE01448.1\|1422616_1423018_-	prophage protein	D2IZL1	Enterococcus_phage	3.2e-16	59.5
ARE01449.1\|1423020_1423440_-	deoxyuridine 5-triphosphate nucleotidohydrolase	A0A059NT49	Lactococcus_phage	1.1e-72	99.3
ARE01450.1\|1423436_1424048_-	prophage protein	A0A1P8BMI2	Lactococcus_phage	2.9e-53	59.9
ARE01451.1\|1424040_1424400_-	prophage protein	A0A1P8BMI1	Lactococcus_phage	1.7e-64	100.0
ARE01452.1\|1424408_1424918_-	prophage protein	Q9AZU7	Lactococcus_phage	6.7e-11	100.0
ARE01453.1\|1424928_1425234_-	prophage protein	Q9MCB3	Lactococcus_phage	9.2e-40	99.0
ARE01454.1\|1425259_1425499_-	prophage protein	Q9MCB2	Lactococcus_phage	1.6e-31	98.6
ARE01455.1\|1425488_1425668_-	prophage protein	A0A1P8BKF9	Lactococcus_phage	1.4e-24	100.0
ARE01456.1\|1426011_1426206_-	prophage protein	Q9B005	Lactococcus_phage	6.7e-28	100.0
ARE01457.1\|1426208_1426598_-	Holliday junction resolvase	A0A1P8BKM6	Lactococcus_phage	3.9e-67	96.9
ARE01458.1\|1426587_1426860_-	prophage protein	A0A1B1IM06	Lactococcus_phage	5.5e-44	95.6
ARE01459.1\|1426843_1427650_-	prophage protein	A0A1B1IMQ7	Lactococcus_phage	3.3e-105	82.5
ARE01460.1\|1427880_1428204_-	single-strand binding protein	Q9AZV6	Lactococcus_phage	1.8e-54	96.3
ARE01461.1\|1428196_1428955_-	prophage protein	Q0ILF6	Lactococcus_phage	3.3e-147	100.0
ARE01462.1\|1428963_1429359_-	prophage protein	A0A1P8BL23	Lactococcus_phage	1.9e-69	100.0
ARE01463.1\|1429457_1429700_-	prophage protein	A0A1B1IMF7	Lactococcus_phage	1.7e-36	97.5
ARE01464.1\|1429805_1430084_+	prophage protein	A0A059NT68	Lactococcus_phage	1.1e-47	100.0
ARE01465.1\|1430038_1430272_-	prophage protein	A0A059NT46	Lactococcus_phage	1.8e-35	100.0
ARE01466.1\|1430284_1430413_-	prophage protein	Q77JL7	Lactococcus_phage	2.5e-15	97.6
ARE01467.1\|1430414_1430705_-	prophage protein	Q9AZW0	Lactococcus_phage	7.9e-49	97.9
ARE01468.1\|1430717_1431050_-	prophage protein	A0A1B1IMQ3	Lactococcus_phage	1.5e-56	99.1
ARE01469.1\|1431046_1431481_-	prophage protein	A0A1B1IMQ3	Lactococcus_phage	5.0e-63	84.7
ARE01470.1\|1431493_1431733_-	prophage protein	A0A1P8BKU7	Lactococcus_phage	4.8e-36	97.5
ARE01471.1\|1431884_1432583_+	prophage protein	NA	NA	NA	NA
ARE01472.1\|1432575_1432809_-	prophage protein	Q9AZQ6	Lactococcus_phage	7.3e-37	97.4
ARE01473.1\|1433072_1433591_+	Transcriptional regulator xre family	Q9AZW3	Lactococcus_phage	8.6e-38	60.7
ARE01474.1\|1433600_1434188_+	prophage protein	Q9AZW4	Lactococcus_phage	2.6e-107	99.0
ARE01475.1\|1434280_1435171_+	Transposase	NA	NA	NA	NA
ARE01476.1\|1435259_1436090_+	Prophage protein	E3W8I2	Leuconostoc_phage	2.2e-11	49.4
ARE01477.1\|1436212_1437292_+\|integrase	Phage integrase	A5GYP9	Lactococcus_phage	5.7e-201	98.1
ARE01478.1\|1437996_1438332_-	hypothetical protein	NA	NA	NA	NA
ARE01479.1\|1438515_1439226_+	DNA-binding response regulator OmpR family (Rec-wHTH domains)	A0A1V0SGR9	Hokovirus	3.5e-05	29.1
ARE01480.1\|1439215_1440769_+	Signal transduction histidine kinase	W8CYF6	Bacillus_phage	1.1e-32	39.1
1447846:1447864	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1538270 : 1548571

Synechococcus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE01559.1\|1538270_1539827_-	IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	5.2e-70	45.3
ARE01560.1\|1540002_1540545_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	1.8e-09	29.9
ARE01561.1\|1540681_1541719_-	Saccharopine dehydrogenase related protein	NA	NA	NA	NA
ARE01562.1\|1541849_1542380_+	Transcriptional regulator TetR family	NA	NA	NA	NA
ARE01563.1\|1542430_1544020_-	Multidrug resistance ABC transporter ATP-binding and permease protein	W8CYL7	Bacillus_phage	3.0e-09	22.2
ARE01564.1\|1544186_1544735_-	formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.8e-18	31.1
ARE01565.1\|1544762_1545779_-	Phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FGG1	Synechococcus_phage	6.4e-61	40.4
ARE01566.1\|1545967_1548571_-\|protease	ATP-dependent Clp protease chaperonin ATPase ClpB	K4FB40	Cronobacter_phage	9.4e-125	32.8

DBSCAN-SWA_9

1747988 : 1757847

Prochlorococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE01755.1\|1747988_1748750_-	phosphate transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-17	30.0
ARE01756.1\|1748915_1749725_-	phosphate ABC transporter ATP-binding protein PhoT family	W8CYL7	Bacillus_phage	7.0e-10	26.5
ARE01757.1\|1749758_1750652_-	phosphate ABC transporter membrane protein 2 PhoT family	NA	NA	NA	NA
ARE01758.1\|1750651_1751575_-	phosphate transport system permease protein pstD	NA	NA	NA	NA
ARE01759.1\|1751695_1752520_-	phosphate ABC transporter substrate-binding protein PhoT family	E3SNT9	Prochlorococcus_phage	1.8e-05	29.4
ARE01760.1\|1752893_1753790_-	phosphate transport substrate binding protein pstF	E3SM63	Prochlorococcus_phage	7.2e-08	32.4
ARE01761.1\|1754067_1754535_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	2.7e-43	56.6
ARE01762.1\|1754566_1755124_-	Lysophospholipase L1 related esterase	NA	NA	NA	NA
ARE01763.1\|1755228_1757847_-\|tRNA	alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	7.1e-64	33.7

DBSCAN-SWA_10

1772280 : 1788530

Lactococcus_phage(100.0%)

integrase

attL 1770818:1770833|attR 1784785:1784800

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1770818:1770833	attL	NA	NA	NA	NA
ARE01776.1\|1772280_1772481_-	cold shock-like protein cspE	Q9AZD3	Lactococcus_phage	1.5e-30	98.5
ARE01777.1\|1773121_1774039_-	prophage protein	Q9AZG0	Lactococcus_phage	1.5e-106	61.1
ARE01778.1\|1774052_1774352_-	prophage protein	Q9AZG1	Lactococcus_phage	7.4e-26	56.1
ARE01779.1\|1774543_1774723_-	prophage protein	Q9AZG2	Lactococcus_phage	6.0e-23	96.6
ARE01780.1\|1775193_1775700_-	Acetyltransferase	Q9AZG4	Lactococcus_phage	4.2e-90	100.0
ARE01781.1\|1775861_1776032_-	prophage protein	Q9AZG5	Lactococcus_phage	8.2e-06	100.0
ARE01782.1\|1776256_1776619_-	prophage protein	Q9AZG6	Lactococcus_phage	9.9e-33	65.8
ARE01783.1\|1776633_1777206_-	prophage protein	Q9AZG7	Lactococcus_phage	7.9e-93	94.7
ARE01784.1\|1777367_1777574_-	prophage protein	Q9AZG9	Lactococcus_phage	1.6e-32	100.0
ARE01785.1\|1777592_1777775_-	prophage protein	Q9AZH0	Lactococcus_phage	5.3e-27	98.3
ARE01786.1\|1778135_1779833_-	prophage protein	Q9AZH2	Lactococcus_phage	4.1e-246	98.2
ARE01787.1\|1779842_1780112_-	prophage protein	Q9AZH3	Lactococcus_phage	2.0e-38	95.5
ARE01788.1\|1780108_1780261_-	prophage protein	Q9AZH4	Lactococcus_phage	2.7e-16	88.0
ARE01789.1\|1780513_1780684_-	prophage protein	Q9AZH6	Lactococcus_phage	4.6e-25	100.0
ARE01790.1\|1780781_1781450_-	prophage protein	NA	NA	NA	NA
ARE01791.1\|1781546_1781807_-	prophage protein	R9QNG3	Lactococcus_phage	6.2e-21	79.4
ARE01792.1\|1781878_1782376_+	HTH-type transcriptional regulator	R9QMZ5	Lactococcus_phage	1.1e-08	30.6
ARE01793.1\|1782450_1783656_+\|integrase	phage integrase	Q9AZI0	Lactococcus_phage	8.2e-116	54.1
ARE01794.1\|1783782_1784697_-	Lipid kinase from diacylglycerol kinase family	NA	NA	NA	NA
ARE01795.1\|1784853_1785366_-	HD superfamily hydrolase	NA	NA	NA	NA
1784785:1784800	attR	NA	NA	NA	NA
ARE01796.1\|1785698_1785932_+	SSU ribosomal protein S20P	NA	NA	NA	NA
ARE01797.1\|1786025_1788530_-	ATP-dependent DNA helicase RecD/TraA family	A0A1W6JK95	Lactococcus_phage	7.8e-44	25.8

DBSCAN-SWA_11

1905470 : 1986585

100

Lactococcus_phage(75.44%)

protease,tRNA,transposase,terminase,capsid,head,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE01907.1\|1905470_1907348_-\|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification FAD-utilizing enzyme	NA	NA	NA	NA
ARE01908.1\|1907720_1908296_-	hypothetical protein	NA	NA	NA	NA
ARE01909.1\|1908428_1908839_-	hypothetical protein	NA	NA	NA	NA
ARE01910.1\|1908912_1909314_-	Ribonuclease III family protein	NA	NA	NA	NA
ARE01911.1\|1909306_1910653_-\|tRNA	cysteinyl-tRNA synthetase	A0A2K9V966	Bandra_megavirus	5.3e-47	29.5
ARE01912.1\|1910665_1911274_-	membrane protein	NA	NA	NA	NA
ARE01913.1\|1911280_1911880_-	serine O-acetyltransferase	NA	NA	NA	NA
ARE01914.1\|1911986_1912757_-	hypothetical protein	NA	NA	NA	NA
ARE01915.1\|1912965_1915287_-	Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	NA	NA	NA	NA
ARE01916.1\|1915570_1916716_-	hypothetical protein	NA	NA	NA	NA
ARE01917.1\|1917080_1918046_+	Phosphoribosylpyrophosphate synthetase	A0A2K9L2G2	Tupanvirus	2.3e-36	32.8
ARE01918.1\|1918236_1919184_+\|transposase	transposase	H7BVY4	unidentified_phage	3.4e-32	33.0
ARE01919.1\|1919247_1919679_-	Universal stress protein UspA related nucleotide-binding protein	NA	NA	NA	NA
ARE01920.1\|1920071_1921046_+	Cysteine desulfurase aminotransferase class-V family	H7BUW1	unidentified_phage	1.9e-30	36.0
ARE01921.1\|1921069_1921414_+	hypothetical protein	NA	NA	NA	NA
ARE01922.1\|1921504_1922692_-	translation elongation factor 1A (EF-1A/EF-Tu)	A0A076FFS6	Aureococcus_anophage	2.0e-34	29.4
ARE01923.1\|1922934_1923117_+	hypothetical protein	NA	NA	NA	NA
ARE01924.1\|1923175_1923292_+	hypothetical protein	NA	NA	NA	NA
ARE01925.1\|1923349_1926148_-\|tRNA	Isoleucyl-tRNA synthetase	A0A1V0SJ93	Klosneuvirus	1.8e-81	25.8
ARE01926.1\|1926463_1927390_-	Cell division initiation protein	NA	NA	NA	NA
ARE01927.1\|1927446_1928238_-	Cell division protein S4-like domain	NA	NA	NA	NA
ARE01928.1\|1928234_1928510_-	Cell division membrane protein	NA	NA	NA	NA
ARE01929.1\|1928509_1929100_-	hypothetical protein	NA	NA	NA	NA
ARE01930.1\|1929133_1929811_-	hypothetical protein	NA	NA	NA	NA
ARE01931.1\|1929814_1931068_-	cell division protein FtsZ	NA	NA	NA	NA
ARE01932.1\|1931098_1932469_-	cell division protein FtsA	NA	NA	NA	NA
ARE01933.1\|1932629_1933499_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	3.8e-14	35.3
ARE01934.1\|1933611_1934340_-	23S rRNA Gm2251 methyltransferase	A0A2D1A6G0	Rhodococcus_phage	1.2e-05	27.8
ARE01935.1\|1934486_1935605_-	Glycine/D-amino acid oxidase family protein	NA	NA	NA	NA
ARE01936.1\|1935735_1936581_-	aldo/keto reductase family oxidoreductase	A0A1V0SDE7	Indivirus	6.3e-30	32.9
ARE01937.1\|1936592_1937921_-	permease of the major facilitator superfamily	NA	NA	NA	NA
ARE01938.1\|1938086_1938965_-	fhu operon transcription regulator	NA	NA	NA	NA
ARE01939.1\|1938980_1939385_-	transcriptional regulator	NA	NA	NA	NA
ARE01940.1\|1939466_1940777_-	Aminopeptidase C	R4TV59	Phaeocystis_globosa_virus	9.7e-62	31.5
ARE01941.1\|1940905_1941499_-	hydrolase for NAD metabolism	NA	NA	NA	NA
ARE01942.1\|1941556_1942237_-	methylthioadenosine nucleosidase	NA	NA	NA	NA
ARE01943.1\|1942269_1942548_-	hypothetical protein	NA	NA	NA	NA
ARE01944.1\|1942540_1943125_-	ADP-ribose pyrophosphatase	NA	NA	NA	NA
ARE01945.1\|1943229_1944606_-	glucosamine-1-phosphate N-acetyltransferase / UDP-N-acetylglucosamine pyrophosphorylase	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	7.1e-31	35.3
ARE01946.1\|1944833_1945622_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	1.7e-32	33.6
ARE01947.1\|1945700_1945970_-	SSU ribosomal protein S15P	NA	NA	NA	NA
ARE01948.1\|1946151_1948035_-	serine/threonine protein kinase	A0A1V0SDC3	Indivirus	3.1e-21	31.6
ARE01949.1\|1948034_1948811_-	Serine/threonine protein phosphatase	NA	NA	NA	NA
ARE01950.1\|1948891_1950166_-\|tRNA	tRNA and rRNA cytosine-C5-methylase	NA	NA	NA	NA
ARE01951.1\|1951295_1952024_-	hypothetical protein	A0A059NT88	Lactococcus_phage	7.6e-133	100.0
ARE01952.1\|1952205_1952985_-	phage lysin	Q38323	Lactococcus_phage	2.2e-125	97.7
ARE01953.1\|1952984_1953284_-\|holin	phage holin	Q9AZR2	Lactococcus_phage	3.8e-46	99.0
ARE01954.1\|1953296_1953647_-	phage BPP	A5GYT0	Lactococcus_phage	8.9e-55	99.1
ARE01955.1\|1953659_1953896_-	phage BPP	A5GYN1	Lactococcus_phage	4.0e-35	100.0
ARE01956.1\|1953907_1958260_-	phage TAL protein	Q38319	Lactococcus_phage	4.3e-130	58.9
ARE01957.1\|1958259_1959804_-	phage DIT protein	Q9AZR9	Lactococcus_phage	3.1e-232	80.2
ARE01958.1\|1959806_1963574_-	phage TMP protein	Q9AZL5	Lactococcus_phage	1.3e-308	88.0
ARE01959.1\|1963779_1964124_-	prophage protein	Q9AZL6	Lactococcus_phage	1.2e-27	100.0
ARE01960.1\|1964183_1964789_-	prophage small major structural protein	Q9AZL7	Lactococcus_phage	4.9e-109	100.0
ARE01961.1\|1964790_1965186_-	prophage protein	Q9AZL8	Lactococcus_phage	1.4e-67	100.0
ARE01962.1\|1965182_1965665_-\|tail	prophage tail component	Q9AZL9	Lactococcus_phage	2.5e-84	100.0
ARE01963.1\|1965664_1966000_-\|head,tail	prophage head-tail joining protein	Q9AZM0	Lactococcus_phage	5.9e-56	100.0
ARE01964.1\|1965986_1966292_-	prophage protein	Q9AZM1	Lactococcus_phage	4.4e-50	100.0
ARE01965.1\|1966302_1967616_-\|capsid	prophage capsid protein	Q9AZM2	Lactococcus_phage	1.9e-198	99.5
ARE01966.1\|1967605_1968193_-\|head,protease	prophage prohead protease	Q9AZM3	Lactococcus_phage	4.4e-107	100.0
ARE01967.1\|1968192_1969272_-	prophage protein	Q9AZM4	Lactococcus_phage	1.0e-197	99.2
ARE01968.1\|1969268_1969433_-	prophage protein	Q9AZM5	Lactococcus_phage	1.5e-12	70.4
ARE01969.1\|1969441_1971256_-\|terminase	prophage terminase TerL	Q9AZM6	Lactococcus_phage	0.0e+00	99.7
ARE01970.1\|1971255_1971651_-\|terminase	prophage terminase TerS	Q9AZM7	Lactococcus_phage	1.4e-19	39.3
ARE01971.1\|1971807_1972272_-	prophage protein	Q9AZM8	Lactococcus_phage	3.5e-83	98.1
ARE01972.1\|1972316_1972553_-	prophage protein	F0PII8	Enterococcus_phage	2.6e-18	85.2
ARE01973.1\|1972841_1973264_-	prophage protein	Q9AZM9	Lactococcus_phage	1.6e-50	99.3
ARE01974.1\|1973788_1973944_-	prophage protein	Q9AZT8	Lactococcus_phage	8.2e-21	94.1
ARE01975.1\|1973940_1974126_-	prophage protein	R9QMC5	Lactococcus_phage	4.1e-27	100.0
ARE01976.1\|1974133_1974337_-	prophage protein	NA	NA	NA	NA
ARE01977.1\|1974632_1974851_-	prophage protein	A0A059NT96	Lactococcus_phage	2.9e-35	100.0
ARE01978.1\|1974897_1975143_-	prophage protein	R9QPS1	Lactococcus_phage	1.4e-38	98.8
ARE01979.1\|1975164_1975314_-	prophage protein	A0A1W6JKT7	Lactococcus_phage	1.3e-07	58.8
ARE01980.1\|1975310_1975985_-	prophage protein	A0A1P8BKG5	Lactococcus_phage	4.4e-74	77.0
ARE01981.1\|1975977_1976184_-	prophage protein	A0A1P8BL00	Lactococcus_phage	2.4e-31	100.0
ARE01982.1\|1976197_1976722_-	prophage protein	A0A059NT70	Lactococcus_phage	5.5e-93	100.0
ARE01983.1\|1977062_1977257_-	prophage protein	Q9B005	Lactococcus_phage	1.6e-26	96.9
ARE01984.1\|1977259_1977649_-	prophage protein	R9QLL1	Lactococcus_phage	1.6e-68	99.2
ARE01985.1\|1977645_1978371_-	prophage protein	R9QNG0	Lactococcus_phage	1.5e-133	99.2
ARE01986.1\|1978370_1979159_-	prophage protein	A0A1P8BLH6	Lactococcus_phage	1.2e-115	95.4
ARE01987.1\|1979291_1979843_-	single-strand binding protein	Q0ILF2	Lactococcus_phage	4.8e-55	100.0
ARE01988.1\|1979856_1980348_-	prophage protein replication protein	Q0ILF3	Lactococcus_phage	3.2e-58	100.0
ARE01989.1\|1980356_1980746_-	prophage protein	Q0ILF4	Lactococcus_phage	6.0e-68	99.2
ARE01990.1\|1980747_1981080_-	prophage protein	NA	NA	NA	NA
ARE01991.1\|1981076_1981313_-	prophage transcriptional regulator	NA	NA	NA	NA
ARE01992.1\|1981412_1981649_-	prophage protein	Q9MC36	Lactococcus_phage	4.6e-39	97.4
ARE01993.1\|1981751_1982102_+	prophage protein	NA	NA	NA	NA
ARE01994.1\|1982037_1982217_-	prophage protein	NA	NA	NA	NA
ARE01995.1\|1982253_1982487_-	prophage protein	A0A059NT46	Lactococcus_phage	1.8e-35	100.0
ARE01996.1\|1982580_1982850_-	prophage protein	NA	NA	NA	NA
ARE01997.1\|1982863_1983613_-	prophage protein	A0A1B1IMQ3	Lactococcus_phage	6.7e-84	68.9
ARE01998.1\|1983624_1983855_-	prophage protein	Q77NT7	Lactococcus_phage	2.0e-34	98.7
ARE01999.1\|1983959_1984226_+	prophage protein	Q38335	Lactococcus_phage	7.0e-44	100.0
ARE02000.1\|1984219_1984414_-	prophage protein	NA	NA	NA	NA
ARE02001.1\|1984453_1984663_-	prophage protein	NA	NA	NA	NA
ARE02002.1\|1984816_1985194_+	prophage protein	NA	NA	NA	NA
ARE02003.1\|1985186_1985453_+	prophage protein	NA	NA	NA	NA
ARE02004.1\|1985455_1985587_-	prophage protein	NA	NA	NA	NA
ARE02005.1\|1985621_1985819_-	prophage protein	NA	NA	NA	NA
ARE02006.1\|1986048_1986585_+	Transcriptional regulator xre family	A0A1B1IMU5	Lactococcus_phage	2.8e-52	83.7

DBSCAN-SWA_12

2194505 : 2239058

Lactococcus_phage(96.15%)

transposase,integrase,terminase,capsid,portal,holin

attL 2192273:2192291|attR 2238984:2239002

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2192273:2192291	attL	NA	NA	NA	NA
ARE02218.1\|2194505_2195453_+\|transposase	transposase	H7BVY4	unidentified_phage	3.4e-32	33.0
ARE02219.1\|2195706_2196168_-	Competence protein ComGF	NA	NA	NA	NA
ARE02220.1\|2196193_2196490_-	Competence protein comGE	NA	NA	NA	NA
ARE02221.1\|2196461_2196860_-	comGD Competence protein	NA	NA	NA	NA
ARE02222.1\|2196852_2197122_-	Competence protein ComGC	NA	NA	NA	NA
ARE02223.1\|2197248_2198031_-	hypothetical protein	A5GZ21	Lactococcus_phage	4.1e-140	100.0
ARE02224.1\|2198182_2198962_-	phage lysin	A5GYT2	Lactococcus_phage	4.6e-128	100.0
ARE02225.1\|2198961_2199261_-\|holin	phage holin	A5GYT1	Lactococcus_phage	9.9e-47	100.0
ARE02226.1\|2199273_2199624_-	prophage BPP	A5GYT0	Lactococcus_phage	1.8e-55	100.0
ARE02227.1\|2199636_2199873_-	prophage BPP	A5GZ41	Lactococcus_phage	3.1e-35	100.0
ARE02228.1\|2199884_2204132_-	prophage TAL	A5GYS8	Lactococcus_phage	0.0e+00	98.1
ARE02229.1\|2204128_2205658_-	prophage DIT	A5GYM9	Lactococcus_phage	7.1e-298	100.0
ARE02230.1\|2205667_2208277_-	prophage TMP	A5GYM8	Lactococcus_phage	1.6e-172	100.0
ARE02231.1\|2208266_2208974_-	prophage protein	A5GYM7	Lactococcus_phage	3.7e-124	100.0
ARE02232.1\|2208989_2209397_-	prophage protein	A5GYM6	Lactococcus_phage	4.5e-66	100.0
ARE02233.1\|2209453_2209930_-	prophage protein	A5GYM5	Lactococcus_phage	3.0e-85	100.0
ARE02234.1\|2209940_2210375_-	prophage protein	A5GYM4	Lactococcus_phage	8.7e-76	100.0
ARE02235.1\|2210374_2210704_-	prophage protein	A5GYM3	Lactococcus_phage	4.4e-56	100.0
ARE02236.1\|2210700_2211045_-	prophage protein	A5GYM2	Lactococcus_phage	3.1e-60	100.0
ARE02237.1\|2211034_2211436_-	prophage protein	A5GYM1	Lactococcus_phage	6.8e-59	100.0
ARE02238.1\|2211509_2211746_-	prophage protein	A5GYM0	Lactococcus_phage	4.2e-32	100.0
ARE02239.1\|2211774_2212692_-\|capsid	prophage capsid protein	A5GYL9	Lactococcus_phage	3.0e-166	100.0
ARE02240.1\|2212706_2213756_-	prophage protein	A5GYL8	Lactococcus_phage	2.0e-166	100.0
ARE02241.1\|2213771_2214602_-	prophage protein	A5GYL7	Lactococcus_phage	2.6e-153	100.0
ARE02242.1\|2214594_2216124_-\|portal	prophage portal protein	A5GYL6	Lactococcus_phage	2.0e-292	100.0
ARE02243.1\|2216136_2217588_-\|terminase	prophage terminase TerL	A5GYP8	Lactococcus_phage	6.5e-285	100.0
ARE02244.1\|2217568_2218042_-\|terminase	prophage terminase TerS	A5GYP7	Lactococcus_phage	7.2e-84	100.0
ARE02245.1\|2218213_2218603_-	prophage protein	A5GYP6	Lactococcus_phage	6.4e-70	100.0
ARE02246.1\|2218679_2218988_-	prophage protein	A5GYP5	Lactococcus_phage	8.1e-44	100.0
ARE02247.1\|2219116_2219332_-	prophage protein	A5GYP4	Lactococcus_phage	1.3e-37	100.0
ARE02248.1\|2219328_2219547_-	prophage protein	A5GYP3	Lactococcus_phage	4.9e-35	100.0
ARE02249.1\|2219565_2220285_-	prophage protein	A5GYP2	Lactococcus_phage	1.7e-137	100.0
ARE02250.1\|2220311_2220671_-	prophage protein	A5GYP1	Lactococcus_phage	3.6e-59	100.0
ARE02251.1\|2220674_2221094_-	deoxyuridine 5-triphosphate nucleotidohydrolase	A5GYP0	Lactococcus_phage	2.3e-73	100.0
ARE02252.1\|2221090_2221456_-	prophage protein	A5GYN9	Lactococcus_phage	1.2e-62	100.0
ARE02253.1\|2221452_2221995_-	prophage protein	A5GYN8	Lactococcus_phage	1.0e-102	100.0
ARE02254.1\|2221987_2222170_-	prophage protein	A0A1P8BMI1	Lactococcus_phage	2.3e-30	100.0
ARE02255.1\|2222188_2222347_-	prophage protein	A5GYN6	Lactococcus_phage	4.5e-22	100.0
ARE02256.1\|2222538_2222745_-	prophage protein	Q9MC28	Lactococcus_phage	4.8e-32	100.0
ARE02257.1\|2222852_2223263_-	prophage protein	A5GZ50	Lactococcus_phage	1.3e-76	100.0
ARE02258.1\|2223275_2223548_-	prophage protein	A5GZ49	Lactococcus_phage	2.2e-48	100.0
ARE02259.1\|2223510_2223714_-	prophage protein	A5GZ48	Lactococcus_phage	2.1e-32	100.0
ARE02260.1\|2223710_2224637_-	prophage protein	A5GZ47	Lactococcus_phage	1.2e-151	100.0
ARE02261.1\|2224899_2225967_-	prophage protein	A5GZ46	Lactococcus_phage	9.0e-175	100.0
ARE02262.1\|2225968_2226706_-	prophage protein	A5GZ45	Lactococcus_phage	1.0e-137	100.0
ARE02263.1\|2226812_2226989_-	prophage protein	A5GZ44	Lactococcus_phage	2.2e-25	100.0
ARE02264.1\|2226985_2227234_-	prophage protein	A5GZ43	Lactococcus_phage	1.7e-36	100.0
ARE02265.1\|2227246_2227369_-	prophage protein	A0A1B1ILZ0	Lactococcus_phage	5.9e-14	100.0
ARE02266.1\|2227365_2227548_-	prophage protein	A5GZ68	Lactococcus_phage	2.4e-27	100.0
ARE02267.1\|2227563_2228253_-	Phage anti-repressor protein	A5GZ67	Lactococcus_phage	1.8e-123	100.0
ARE02268.1\|2228311_2228545_-	phage repressor	A5GZ66	Lactococcus_phage	5.0e-38	100.0
ARE02269.1\|2228721_2229132_+	Transcriptional regulator xre family	A5GZ65	Lactococcus_phage	4.7e-71	100.0
ARE02270.1\|2229142_2229727_+	prophage protein	A5GZ64	Lactococcus_phage	5.9e-112	100.0
ARE02271.1\|2229782_2230322_+	prophage protein	A5GZ63	Lactococcus_phage	5.7e-93	100.0
ARE02272.1\|2230447_2231905_+\|integrase	phage integrase	A5GZ62	Lactococcus_phage	6.6e-277	100.0
ARE02273.1\|2232055_2233075_-	Competence protein ComGB	NA	NA	NA	NA
ARE02274.1\|2233022_2233913_-	Competence protein ComGA	NA	NA	NA	NA
ARE02275.1\|2234081_2239058_-	DNA polymerase III catalytic subunit PolC type	A0A0K2SUJ2	Clostridium_phage	1.1e-20	35.6
2238984:2239002	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage