CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP034574	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77D, complete sequence	0 crisprs	NA	0
CP016713	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77A, complete sequence	0 crisprs	NA	0
CP034573	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77C, complete sequence	0 crisprs	NA	0
CP016714	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77B, complete sequence	0 crisprs	RT,csa3	1
CP015906	Lactococcus lactis subsp. lactis strain UC77 chromosome, complete genome	2 crisprs	cas3,DEDDh,csa3,DinG	15
CP034575	Lactococcus lactis subsp. lactis strain UC77 plasmid pUC77E, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP015906_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP015906_1

1469901-1470079

Orphan

Consensus_repeat	Method
GATAAAATGCTCATGTTAATCGCATTACTGACAGAAAGTTCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP015906_1

>merge|CP015906|1|1469901-1470079|CRISPRCasFinder
GATAAAATGCTCATGTTAATCGCATTACTGACAGAAAGTTCAGATTGCTGAACCTTCTTTTATTCATCGATAAAATGCTCATGTTAATCGCATTGCTGACAGAAAGTTCAGCTTGCTGAACCTTCTTTTATTCATCGATAAAATGCTCATGTTAATCGCATTGCTGACAGAAAGTTCAG

>CP015906|1|1|1469901-1470079|CRISPRCasFinder
GATAAAATGCTCATGTTAATCGCATTACTGACAGAAAGTTCAG	ATTGCTGAACCTTCTTTTATTCATCGATAAAATGCTCATGTTAATCGCATTGCTGACAGAAAGTTCAGCTTGCTGAACCTTCTTTTATTCATC
GATAAAATGCTCATGTTAATCGCATTGCTGACAGAAAGTTCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP015906.1\|ARE08598.1\|1462019_1463045_+\|glycerol-3-phosphate-dehydrogenase-(NAD(P)+)	unknown	unknown	gnl\|CDD\|234629
CP015906.1\|ARE08610.1\|1473486_1474626_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369254
CP015906.1\|ARE08603.1\|1465981_1466698_+\|16S-rRNA-methyltransferase-GidB	unknown	unknown	gnl\|CDD\|223434
CP015906.1\|ARE08602.1\|1465025_1465985_+\|Geranylgeranyl-pyrophosphate-synthase	unknown	unknown	gnl\|CDD\|223220
CP015906.1\|ARE08612.1\|1475437_1475995_-\|ribosomal-large-subunit-pseudouridine-synthase-E	unknown	unknown	gnl\|CDD\|211334
CP015906.1\|ARE08609.1\|1472115_1473327_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226711
CP015906.1\|ARE08600.1\|1464100_1464508_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227646
CP015906.1\|ARE08605.1\|1467180_1467894_-\|orotidine-5-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
CP015906.1\|ARE08616.1\|1478731_1479736_-\|cell-surface-protein	unknown	unknown	gnl\|CDD\|368712
CP015906.1\|ARE08614.1\|1477553_1478366_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372694
CP015906.1\|ARE08608.1\|1470374_1471739_-\|Multidrug-resistance-protein-B-MF-superfamily	unknown	unknown	gnl\|CDD\|341046
CP015906.1\|ARE08611.1\|1474622_1475408_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224429
CP015906.1\|ARE08604.1\|1466927_1467179_-\|hypothetical-protein	unknown	unknown	unknown
CP015906.1\|ARE08615.1\|1478340_1478685_-\|hypothetical-protein	unknown	unknown	unknown
CP015906.1\|ARE08601.1\|1464504_1465035_+\|membrane-protein	unknown	unknown	gnl\|CDD\|227110
CP015906.1\|ARE08606.1\|1468043_1469009_-\|dihydroorotate-dehydrogenase-1B	unknown	unknown	gnl\|CDD\|235982
CP015906.1\|ARE08613.1\|1476312_1477476_-\|cell-surface-protein	unknown	unknown	gnl\|CDD\|371730
CP015906.1\|ARE08617.1\|1479747_1480872_-\|hypothetical-protein	unknown	unknown	unknown
CP015906.1\|ARE08599.1\|1463088_1464030_+\|UDP--glucose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|224131
CP015906.1\|ARE08607.1\|1469051_1469840_-\|Dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814

Protein	Function_ID	Function_description	E-value
CP015906.1\|ARE08598.1\|1462019_1463045_+\|glycerol-3-phosphate-dehydrogenase-(NAD(P)+)	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	1.94654e-180
CP015906.1\|ARE08610.1\|1473486_1474626_+\|hypothetical-protein	gnl\|CDD\|369254	pfam07191, zinc-ribbons_6, zinc-ribbons. This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family have 8 highly conserved cysteine residues, which form two zinc ribbon domains.	0.000852226
CP015906.1\|ARE08603.1\|1465981_1466698_+\|16S-rRNA-methyltransferase-GidB	gnl\|CDD\|223434	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane].	2.20408e-85
CP015906.1\|ARE08602.1\|1465025_1465985_+\|Geranylgeranyl-pyrophosphate-synthase	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	9.30264e-84
CP015906.1\|ARE08612.1\|1475437_1475995_-\|ribosomal-large-subunit-pseudouridine-synthase-E	gnl\|CDD\|211334	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.	1.86593e-99
CP015906.1\|ARE08609.1\|1472115_1473327_+\|hypothetical-protein	gnl\|CDD\|226711	COG4260, COG4260, Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism].	4.46487e-169
CP015906.1\|ARE08600.1\|1464100_1464508_+\|hypothetical-protein	gnl\|CDD\|227646	COG5341, COG5341, Uncharacterized protein conserved in bacteria [Function unknown].	1.24753e-52
CP015906.1\|ARE08605.1\|1467180_1467894_-\|orotidine-5-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	3.7665e-134
CP015906.1\|ARE08616.1\|1478731_1479736_-\|cell-surface-protein	gnl\|CDD\|368712	pfam06030, DUF916, Bacterial protein of unknown function (DUF916). This family consists of several hypothetical bacterial proteins of unknown function.	7.0595e-28
CP015906.1\|ARE08614.1\|1477553_1478366_-\|hypothetical-protein	gnl\|CDD\|372694	pfam13731, WxL, WxL domain surface cell wall-binding. The WxL motif appears in two or three copies in these bacterial proteins and confers a cell surface localization function. It seems likely that this region is the cell wall-binding domain of gram-positive bacteria, and may interact with the peptidoglycan.	1.15853e-29
CP015906.1\|ARE08608.1\|1470374_1471739_-\|Multidrug-resistance-protein-B-MF-superfamily	gnl\|CDD\|341046	cd17503, MFS_LmrB_MDR_like, Bacillus subtilis lincomycin resistance protein (LmrB) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including Bacillus subtilis lincomycin resistance protein LmrB, and several proteins from Escherichia coli such as the putative MDR transporters EmrB, MdtD, and YieQ. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.37667e-66
CP015906.1\|ARE08611.1\|1474622_1475408_+\|hypothetical-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.58524e-71
CP015906.1\|ARE08601.1\|1464504_1465035_+\|membrane-protein	gnl\|CDD\|227110	COG4769, COG4769, Predicted membrane protein [Function unknown].	1.74231e-64
CP015906.1\|ARE08606.1\|1468043_1469009_-\|dihydroorotate-dehydrogenase-1B	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	0
CP015906.1\|ARE08613.1\|1476312_1477476_-\|cell-surface-protein	gnl\|CDD\|371730	pfam11797, DUF3324, Protein of unknown function C-terminal (DUF3324). This family consists of several hypothetical bacterial proteins of unknown function.	6.66783e-46
CP015906.1\|ARE08599.1\|1463088_1464030_+\|UDP--glucose-1-phosphate-uridylyltransferase	gnl\|CDD\|224131	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane].	1.35337e-172
CP015906.1\|ARE08607.1\|1469051_1469840_-\|Dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	1.45438e-109

>CP015906.1|ARE08607.1|1469051_1469840_-|Dihydroorotate-dehydrogenase-electron-transfer-subunit
MPKLQEMMTIVSQREVASNIFEMVLKGELVEEMDLPGQFLHLAVPNASMLLRRPISISSWDKVAKTCTILYRIGDETSGTYEISKLQSGAKIDVMGPLGNGFPVDEVVSTDKILIVGGGIGVPPLYELAKQLEEKNCQMTILLGFASEKVKILEKEFAELKNVSLKIATDDGSYGTKGHVGMLMEEIDFEVDALYTCGAPAMLKAVAKKYEQLERLYISMESRMACGIGACYACVEHDKEDENHALKVCEDGPVFLGKQLLL
>CP015906.1|ARE08606.1|1468043_1469009_-|dihydroorotate-dehydrogenase-1B
MIVTKKLGEKMTENNRLSVKLPGLDLKNPIIPASGCFGFGEEYAKYYDLNKLGSIMVKATTLHPRFGNPTPRVAETASGMLNAIGLQNPGLEVIMAEKLPWLNENFPDLPIIANVAGSEEDDYVAVCAKIGDAPNVKVIELNISCPNVKHGGQAFGTDPDVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRKPVLANITGGLSGPAIKPVALKLIHQVAQVVDIPIIGMGGVESAQDVLEMYMAGASAVAVGTANFADPFVCPKIIEKLPEVMDQYGIDSLENLIQEVKNSKK
>CP015906.1|ARE08605.1|1467180_1467894_-|orotidine-5-phosphate-decarboxylase
MQENRPVIALDFPEFSDVKDFLEKFDPSEQLYIKLGMELFYTAGPQVVYYVKSLGHSVFLDLKLHDIPNTVESSMHVLARLGVDMVNVHAAGGVEMMVAAKRGLEAGTPVGRQRPKLIAVTQLTSTSEEIMQNDQKIMTSLEESVINYAQKTAQAGLDGVVCSAHEVEKIKAATSKEFICLTPGIRPEGASKGDQKRVMTPKEARTIGSDYIVVGRPITQAKDPVASYHAIKAEWNR
>CP015906.1|ARE08604.1|1466927_1467179_-|hypothetical-protein
MKKLLHFLVVLLGIFVAFILARLFIEIYTIVGDVYLQVDNKTITLYKVLAEIDYLSVGITFAMVFAYMAPIRLNCCRRRKIMV
>CP015906.1|ARE08603.1|1465981_1466698_+|16S-rRNA-methyltransferase-GidB
MTPDEFLSALTEFDIQLSDKQIKQFERYFELLVEWNEKINLTAITEKNEVYLKHFYDSIAPILYGLITDQPVSILDIGAGAGFPSLPMKIIFPELKVTIIDSLNKRINFLSLLTEELGLENVTLLHGRAEDFGQDANYRGTFDFVTARAVARLSVLTEFTIPFLKKNGILLSLKAAQFEEELNDAKKAIATLGGKFIKEVAYELPNGDERHIALIEKKKETPKKYPRKAGTPAKNPIK
>CP015906.1|ARE08602.1|1465025_1465985_+|Geranylgeranyl-pyrophosphate-synthase
MDLKNNFWKDYPELEKELVQVQQLMKSHVTIKNSDVKSAIFDIFDAGGKMLRPAYLLLFSGFTDLSESERLALAASVEMMHTATLVHDDVIDHADTRRGVATLSAKYGPEIAVYAGDYLFIAVFRLMSEHSLELSNLTKNIGSIERLLGGELGQLNHHFNLQQTLDDYIENISGKTGELFALSASVAPLISKNNTLTKRAYKIGMNIGISFQIMDDYLDYASTAQTLGKPVLEDIKQGIYSAPVLFALQENNALVSELIKNEKFDEVYDFIKTSDALEKTKALAKSYTLSALNLIDKLPKGKNRELIAEITRKLLERTL
>CP015906.1|ARE08601.1|1464504_1465035_+|membrane-protein
MNIKEYVYVSLLTAAAVVMGIIESSLPPFFAFAPGAKVGLANLVMIIAVFTLRWRQVWVMQILRLLITALFTGFSVFLYSFAGGILSLLAMYLMKQFGPKLVSMIGISTVGGFFHNFGQLAMASLLAKTTSVMLYLPWLAFFGILAGFAIGIAGNQLITRVKPIQELFIKESKQWT
>CP015906.1|ARE08600.1|1464100_1464508_+|hypothetical-protein
MNFFKNTVNFFKSIKTKPLDFVIIFLLFIASFSTLFFFATGSKGAQAELRISGKVIKTFNLNKNQTWTYRDKDGDYNKIQVKNGEIAVVEANCKDQIDVQRGYISKTGETIVCLPHNLVIEVMSGQKDEQVDYKV
>CP015906.1|ARE08599.1|1463088_1464030_+|UDP--glucose-1-phosphate-uridylyltransferase
MKQNIIPTKARKVRKAVIPAAGLGTRFLPATKAIAKEMLPIVDKPTIQFIVEEALKSGIEDILIVTGKAKRPIEDHFDSNIELEQNLLEKGKTELLKLVEETTDINLHFIRQSHPKGLGHAVLQAKAFVGNEPFVVMLGDDLMNITGNETPLTKDLINDYEKTHASTIAVMKVPHDDVDKYGVIDPNGEVSKGLYNVERFVEKPNVDEAPSDLAIIGRYLLTPEIFDVLETQVPGAGNEIQLTDAIERLNKTQRVFAHEFTGKRYDVGDKLGFVETTIEYGLEHPQIGANLKNYIIEKAKELSKDDSKNITKK
>CP015906.1|ARE08598.1|1462019_1463045_+|glycerol-3-phosphate-dehydrogenase-(NAD(P)+)
MNPQKIAVLGPGSWGTALSQVLNDNGHEVRIWGNNPEQMAEINEKHTNTRYFKDVVLDEKIKAFDRLDLALEDVDAILFVVPTKVTRLVAKQVAEVLKHKVHILHASKGLEQGTHERISTILEEEIPAQLRGEIVVVSGPSHAEETIVRDITLISAASKDHDEAKYAQAIFSNDYFRLYTNTDVIGVETAGALKNIIAVGAGALHGLGFGDNAKAAIITRGLAEITRLGVAMGAEPLTYSGLSGVGDLIVTGTSIHSRNWRAGDALGRGEKLADIEKNMGMVIEGVSTTKAAFELAQQLGIDMPITETIYKVLYENLDAKTGILDIMRRETRAENEFINNK
>CP015906.1|ARE08608.1|1470374_1471739_-|Multidrug-resistance-protein-B-MF-superfamily
MNKNNHFHLLGAVIATGILSFSGVLIETAMNVTFPTLINEFGLSTSKIQWVTTIYLLVIAITIPLSSYFNERFSARKLFLVANLIFLVGVLTNCFSPNFAMLLFGRLLQGVGTGIGLPLMFHLILTKAPLHKRGMMMGIGTLTTSIAPAIGPTYGGIISNSLDWRYIYIFLLPLVVISLVLGLACLPREGEKTPKKLALRPVISLSIMFFAFISALSAEHLMTFALLFIVGLVGAFLFVQFNRKESLIDLGILKNHRFVALIFSLLVYQALLLGLSFVLPSFIQVSAGFSSSVAGLFMFSGALIGAVLAPISGKVLDQIGARKPITTGLILAALGLALIFVFLPTKSLALLLGAHIVLMLGLGISYSNLMTCSLSTLATDQLSDGNALVNTLQQFIGAVATAVVATTLSIFQGLNGFKVGTSHGTSIILALFFILIIVSLIVSFPNLKKIRANH
>CP015906.1|ARE08609.1|1472115_1473327_+|hypothetical-protein
MGIIKAATGSLGGALADQWLEVIEPNEMSDQTVFTKGIKVRKDAKRGSNRKGTEDVITDGSIVHVYENMMMILVDGGKIIDYTAEPGYYTVKNDTAPSLFNGDLRDSIQESFFRFKFGGTTPQKQEVYYVNLQEIKGIKFGTATPLQYFDNFYNAELFLRTHGTYSIKITDPLAFYANVIPKNADHVEIQEINDQYLAEFLTALNTSINQYSAQGERVSFLTSKSMELSKYMASVLDEDWKQLRGMEIVSVAVASISYTDDSQKLINMRNQGAMLGDPSIREGFVQGAVARGLEAAGSNTGGATNAFMGMNMGGQNLAGFSQTNQAQMQAQAENKADTWTCPECNTKNTGKFCSNCGQAKPSATPVMPELNMACNECGAVVNLANGVPKFCPECGKPFVAKAL
>CP015906.1|ARE08610.1|1473486_1474626_+|hypothetical-protein
MSESQVLTHKCPNCGGPLLFEPKNQKFHCEYCGSTFTEQEVSDFEAKQEAAKVTDSPISSVSNAETTDEKEKITDSDQKRADENTDEEIGLFLCPSCGAEIVTDATTASTWCYYCHNPVVLTERLSGKFLPEKILPFQIERKAAEEQFLDWVGKKKFVPKAFFDKKQIQNLSGVYFPYWAVDAELSGGISAQATNLRVWIVGDTEYTEHSQYEIQRGGETKFKDLIKNALKKNLSDKMVGAVQPFDMTAAIPFKNQYLSGFLTEKRDIEFPDMKENVEREFRQYADGLMESTIIGYTSVSNLQSNQQIKNIDEDYVLLPIWLVTYKEAGNDRLFYYAMNGQTGKVAGLLPIDKKKLWTVAIGIFILVLLLGIIVGYLLS
>CP015906.1|ARE08611.1|1474622_1475408_+|hypothetical-protein
MRKKLVFLSLFFLSFFFLLLAPKTAAATFSSGLEDNLQLLGGNVTLLEQEAQKLANETKAGVYVVTTDSSTPASQMAKTYLADKVGAKNNGVVLVINMNLRKVYIWATGNLKYYLPSSRIEKTLDIVQPELTDNNYYQAVSGFFDQVSKYYQAGIPTSRKYSINSETGAVTFHRSFQPLSILIALIISLIAAGGFVWAIYRRYQMKDAHAVWRYDYGRNGNLELHQREDILVNTFITTRIIPRPSSDNNNFSDGSGGGRSF
>CP015906.1|ARE08612.1|1475437_1475995_-|ribosomal-large-subunit-pseudouridine-synthase-E
MNFCKKIMIILFNKPYDVLTKFTDGEGRKTLKDYIKIPNVYAAGRLDKDSEGLLLLTDDGKLNHLLTDPKSKSYKTYLVQVEGEFSPEAAQKLQKGLLLKDGKTLPAKVKLIDEPDWLWERTPPIRERKAIPTSWVEISIKEGKNRQIRRMTAAVGFPTLRLIRWSIGQYSLGNLKSGEYKIIQK
>CP015906.1|ARE08613.1|1476312_1477476_-|cell-surface-protein
MKKLQLFLSAIFLTLSFGLAQTGYARTDDYTVKPIIPENQSNKDLGYFDILLGADKEQTLQVELSNNTEQEIKIDVTLSSAVTNMTGLVVYEPTEIVADSSLKYNLKDYVNTPKVVTLPPLTRQKLDLKVKMPNEAFDGQIAGGITFSKEGQNDKEEDSEGITVKNTYSYTIALLMRQNDNEVSPDLKLKTVSPSQINGRNVINVNLQNPTMTYINTMNVKATISGISNTDIKYTYSNSMMQMAPNTSFDLPIPTSNQSAATRVSEPLKPGKYRLQLVVNARTDNQGKYEAQVDNKTARYKYQWTFDQEFTISDNQAQKLNDSDPTVKKEKDWTWRLFVIGILLLVLFLIILLWKRRKKSQKEEEEKQALREKIEAQEKIIDDLNKK
>CP015906.1|ARE08614.1|1477553_1478366_-|hypothetical-protein
MKKTILSLSGVAVITATLLSTSVLEVSAASVGSTTSGANVAFQPKKTPTNPVSPGDGKTPISPTTPGVPNTSNPVASDDGLTLDYVPAINFGTHYVDASTAHTWSAWAANDGSGKAIPQFLQVTDNRGTATGPTGWSVSLTQTAQFKGTKAGDLVNAVMTFNNDKTNTVVSTSMNKASSTVNTATNALVPGTAVNIFQADAGTGTGTNLLSFGAGDGSTLVTDPETLDSATNTTGKVDPNITLNVPAGSAKVDTYTTTLNWNLYSAPGNA
>CP015906.1|ARE08615.1|1478340_1478685_-|hypothetical-protein
MKIKYILWVICALLLLNTSVILAQEIGGTNTTGKVGFLEKEPIEKPPVTSSSQATGQSQILTNQNLPIVGTNQNDSLMPFVVGLVTIGVGSLMIKKTKRIRIKENFNEKNNTQP
>CP015906.1|ARE08616.1|1478731_1479736_-|cell-surface-protein
MKKVYKLIFLSILSILLIVQSKVAYSESPTSDFSVEAILEGHQKDKSITYWWLQVEKTQSINLKLKISNGNEENNFEITSNQAVNNNNFTLDYSLSAEEVSQYLHHKNSNFNFYQDIYFDETQEAGKLKITLAPNEVREITINLKIPKEGIKGQLIGGINVTKVPKESDRQEGILNVYSNVVALVMEDKDYSESHKQNLEFALEKSNEKEQVIKIKNSNSFLLSNMNIKAVIKDQKGEVVSEFSNPKTAVVPNASVSIKLNNQKELVKGAKYYLTVDSSNQTFKRNLIVSDSGNLKILEKKKEEIQPLNKKSVGLSLILMVVISSGGIYAYFKK
>CP015906.1|ARE08617.1|1479747_1480872_-|hypothetical-protein
MYYDDGSLLTVGALNWNINGSFVINGTVNTSSTYAGGWFMALNTLNSWNLNVGQNATLKVTTGGVISLDAFLTGAVKWNFAQGSSVLFNNLNPNQNVVSLAPGLGSSITMTDPKVVTFNTAGGSVFSTTVLTFPITISGSGLRTHSSSTGYTFDSTYDLITPNKGTITPTSSDIWYRMNTGTLTTFNPTLQVTNLSPNSYGSDASSIAAGKYISWYQPLGFQLNATLSSMNRTFNVSLDPTLTQGTPVDGSWSSLINGASTETLVVGDDRAQNPNIHVLVKMTQNNFPNGLQYYWVDPTTKTTSQLILNSALQIASITSDSTLPSWIKMTGAGSWYTLTFPTDSGLNIKANNSLLTQTNTNAGTFQYTVANGPS

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Crispr_ID: CP015906_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP015906_2

1927806-1927900

Orphan

Consensus_repeat	Method
TTTATTACTGACAGACTTGTCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP015906_2

>merge|CP015906|2|1927806-1927900|CRISPRCasFinder
TTTATTACTGACAGACTTGTCAGCTTTGCTGACAAATCCTTCATCCATTGATAAAAAGCTCAATTCAATCGCTTTTTACTGACAGACTTGTCAGC

>CP015906|2|2|1927806-1927900|CRISPRCasFinder
TTTATTACTGACAGACTTGTCAGC	TTTGCTGACAAATCCTTCATCCATTGATAAAAAGCTCAATTCAATCG
CTTTTTACTGACAGACTTGTCAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP015906.1\|ARE09050.1\|1922857_1924006_+\|Acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|273881
CP015906.1\|ARE09051.1\|1923990_1924353_+\|hypothetical-protein	unknown	unknown	unknown
CP015906.1\|ARE09059.1\|1930293_1931550_-\|SUF-system-FeS-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
CP015906.1\|ARE09046.1\|1918921_1919578_-\|transcriptional-activator-TenA	unknown	unknown	gnl\|CDD\|381699
CP015906.1\|ARE09061.1\|1932632_1933964_-\|UDP-N-acetylmuramyl-pentapeptide-phosphotransferase/UDP-N-acetylglucosamine-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
CP015906.1\|ARE09057.1\|1928592_1929084_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223659
CP015906.1\|ARE09047.1\|1919935_1920907_-\|biotin--[acetyl-CoA-carboxylase]-ligase-and-biotin-operon-repressor	unknown	unknown	gnl\|CDD\|237010
CP015906.1\|ARE09048.1\|1920912_1921482_-\|Biotin-transporter-component	unknown	unknown	gnl\|CDD\|224187
CP015906.1\|ARE09062.1\|1933966_1934668_-\|Negative-regulator-of-genetic-competence-sporulation-and-motility	unknown	unknown	gnl\|CDD\|227199
CP015906.1\|ARE09064.1\|1935531_1936218_-\|Polar-amino-acid-ABC-transporter-permease-protein	unknown	unknown	gnl\|CDD\|223836
CP015906.1\|ARE09054.1\|1925386_1926232_+\|Dioxygenase	unknown	unknown	gnl\|CDD\|132195
CP015906.1\|ARE09063.1\|1934797_1935532_-\|amino-acid-ABC-transporter-ATP-binding-protein-PAAT-family	unknown	unknown	gnl\|CDD\|224051
CP015906.1\|ARE09049.1\|1921626_1922868_+\|Acyl-CoA-synthetase-(AMP-forming)/AMP-acid-ligase-II	unknown	unknown	gnl\|CDD\|341288
CP015906.1\|ARE09056.1\|1928018_1928477_-\|NifU-like-protein-for-Fe-S-cluster-formation	unknown	unknown	gnl\|CDD\|273918
CP015906.1\|ARE09052.1\|1924327_1924621_+\|hypothetical-protein	unknown	unknown	unknown
CP015906.1\|ARE09053.1\|1924617_1925364_+\|3-oxoacyl-acyl-carrier-protein-reductase	unknown	unknown	gnl\|CDD\|187594
CP015906.1\|ARE09058.1\|1929076_1930294_-\|SUF-system-cysteine-desulfurase-SufS-subfamily	unknown	unknown	gnl\|CDD\|131034
CP015906.1\|ARE09065.1\|1936365_1937274_-\|Diacylglycerol-kinase-family-protein	unknown	unknown	gnl\|CDD\|224513
CP015906.1\|ARE09060.1\|1931687_1932458_-\|Iron-regulated-ABC-transporter-ATPase-subunit-SufC	unknown	unknown	gnl\|CDD\|223473
CP015906.1\|ARE09055.1\|1926372_1927785_-\|Cysteine-desulfurase-activator-complex-subunit-SufB	unknown	unknown	gnl\|CDD\|131035

Protein	Function_ID	Function_description	E-value
CP015906.1\|ARE09050.1\|1922857_1924006_+\|Acetyl-CoA-acetyltransferase	gnl\|CDD\|273881	TIGR01930, 3-ketoacyl-CoA_thiolase, acetyl-CoA acetyltransferases. This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatty acid oxidation. [Fatty acid and phospholipid metabolism, Other].	4.30804e-158
CP015906.1\|ARE09062.1\|1933966_1934668_-\|Negative-regulator-of-genetic-competence-sporulation-and-motility	gnl\|CDD\|227199	COG4862, MecA, Negative regulator of genetic competence, sporulation and motility [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Cell motility and secretion].	3.81196e-86
CP015906.1\|ARE09059.1\|1930293_1931550_-\|SUF-system-FeS-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	9.30838e-131
CP015906.1\|ARE09046.1\|1918921_1919578_-\|transcriptional-activator-TenA	gnl\|CDD\|381699	cd19364, TenA_C_BsTenA-like, TenA_C proteins similar to Bacillus subtilis TenA. This family of TenA proteins belongs to the TenA_C class as it has a conserved active site Cys residue; the double Glu residues identified in the active site of TenA_E from the archaeon Pyrococcus furiosus is conserved in this family. TenA_C proteins (EC 3.5.99.2) catalyze the hydrolysis of the thiamin breakdown product 4-amino-5-amino-methyl-2-methylpyrimidine (amino-HMP) to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) in a thiamin salvage pathway. This family includes Bacillus subtilis TenA which has been shown to be a thiaminase II, catalyzing the hydrolysis of thiamine into HMP and 5-(2-hydroxyethyl)-4-methylthiazole (THZ), within thiamine metabolism. It has also been suggested that TenA proteins act as transcriptional regulators based on changes in gene-expression patterns when TenA is overexpressed in Bacillus subtilis, however this effect may be indirect.	9.62218e-119
CP015906.1\|ARE09057.1\|1928592_1929084_-\|hypothetical-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.83114e-22
CP015906.1\|ARE09047.1\|1919935_1920907_-\|biotin--[acetyl-CoA-carboxylase]-ligase-and-biotin-operon-repressor	gnl\|CDD\|237010	PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA.	8.8094e-70
CP015906.1\|ARE09048.1\|1920912_1921482_-\|Biotin-transporter-component	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	5.72661e-47
CP015906.1\|ARE09064.1\|1935531_1936218_-\|Polar-amino-acid-ABC-transporter-permease-protein	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.09368e-76
CP015906.1\|ARE09054.1\|1925386_1926232_+\|Dioxygenase	gnl\|CDD\|132195	TIGR03151, enACPred_II, putative enoyl-[acyl-carrier-protein] reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.	3.58449e-84
CP015906.1\|ARE09063.1\|1934797_1935532_-\|amino-acid-ABC-transporter-ATP-binding-protein-PAAT-family	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.02808e-157
CP015906.1\|ARE09049.1\|1921626_1922868_+\|Acyl-CoA-synthetase-(AMP-forming)/AMP-acid-ligase-II	gnl\|CDD\|341288	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA. This family of acyl-CoA ligases includes Bacillus subtilis YhfT, as well as long-chain fatty acid-CoA ligase VraA, all of which are as yet to be characterized. These proteins belong to the adenylate-forming enzymes which catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain	4.41422e-68
CP015906.1\|ARE09056.1\|1928018_1928477_-\|NifU-like-protein-for-Fe-S-cluster-formation	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	9.34852e-67
CP015906.1\|ARE09061.1\|1932632_1933964_-\|UDP-N-acetylmuramyl-pentapeptide-phosphotransferase/UDP-N-acetylglucosamine-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	4.68381e-85
CP015906.1\|ARE09053.1\|1924617_1925364_+\|3-oxoacyl-acyl-carrier-protein-reductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	4.80083e-73
CP015906.1\|ARE09058.1\|1929076_1930294_-\|SUF-system-cysteine-desulfurase-SufS-subfamily	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
CP015906.1\|ARE09065.1\|1936365_1937274_-\|Diacylglycerol-kinase-family-protein	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	2.39571e-70
CP015906.1\|ARE09060.1\|1931687_1932458_-\|Iron-regulated-ABC-transporter-ATPase-subunit-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	2.57723e-148
CP015906.1\|ARE09055.1\|1926372_1927785_-\|Cysteine-desulfurase-activator-complex-subunit-SufB	gnl\|CDD\|131035	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0

>CP015906.1|ARE09055.1|1926372_1927785_-|Cysteine-desulfurase-activator-complex-subunit-SufB
MTENSTQEVVKDLEEYKFGFHDNAELEFTTGLGLTEEVIREISETKNEPEWMLEFRLKSFEAFKKLDMPKWGPDLSGIDFNDIVYYQKPSAKAARSWEDVPQEIKDTFEKIGIPEAERSYLAGASAQYESEVVYHNMKDEFEKLGIIFTDTDSGLRDYPEIFKKYFSKLVPPTDNKLAALNSAVWSGGSFVYVPKGVKCEIPIQAYFRINNEKSGQFERTLIIVEEGASIQYVEGCTAPTYSASSLHAAVVEIFVEEGGYMRYSTIQNWSDNVYNLVTKRAAAEKNATVEWIDGNLGSKVSMKYPAVHLNGPGARGTMLSIAFAGANQNQDTGAKMIHNAPNTSSSIISKSIAKNGGAVNYRGQVTFGKNSKKSASHIECDTILMDDLSKSDTVPFNEIHNSQVALEHEAKVSKISEEQLYYLMSRGLTEKEATDMIVMGFIEPFTKELPMEYAVELNRLISYSMEGSIG
>CP015906.1|ARE09054.1|1925386_1926232_+|Dioxygenase
MTWYHELGIKYPLFQGGMAWASNAELVAAVSNNGALGIIGSGGRTANELRRMIRKTKTLTSQPFGVNLMLLDKNIKQLLEVICEEKISVVTTGAGSPKEIIDTIIANNIKLFPVVPNKEIALKMLNLPISGIIVEGNEAGGHVGSQNLASLLKEIAPICPLPLIAAGGIYDHHTASLANILGANGVQVGTAFLLAKECQISPIYQELICKGEENGTSLISDKNGHLTRLLNISSEYPLNKSLKAAVEKGDLINGAFMAGSSSAYLEKIEPVENIIQRIMKK
>CP015906.1|ARE09053.1|1924617_1925364_+|3-oxoacyl-acyl-carrier-protein-reductase
MNKRTILITGATRGIGWAIAQKAAQANHKVILTGRDPLSLKSRAEELKKKFPKTEIQAIPLDVSNRSSVANAAKLIKDIDILINNAGITADSTFKKMSPEIWDEVISVNLTGVFNSTHALLDKINQGGQIITLTSKSALFGNFGQANYAASKAGIIAFTKTLAKELQKSMIRVNSVSPAAVTDMTLPVLKSLKETYGQNIPDEWKMGSSSDVANFIINDLIESEMTGKIFSINGSEIGYWQEPTFHKL
>CP015906.1|ARE09052.1|1924327_1924621_+|hypothetical-protein
MKLYKKINKADLIDYLQSVKDTNSLHYGKNPIIPGNFLLFILEEMYQEFYSMPLSYLKANFCSPAYLNERFCFIFNQNAFQITDRNQTLILKGEWKQ
>CP015906.1|ARE09051.1|1923990_1924353_+|hypothetical-protein
MVSKMILIAQKSLPRHFKLEGQKNFLSLLPQLWQELEGIPYSLKNGENWLLSEEIIRYPSSNYSFDKLKLYLLSEHITRHSKKYIINLSLEITSNTKLLAQINLSLLSEDSWNEIIQKNQ
>CP015906.1|ARE09050.1|1922857_1924006_+|Acetyl-CoA-acetyltransferase
MSFKNPVGIIAANRLPIGKINGFYKKISPETLYQNLIKQQFNKNLLLKKADIDYIILGNVTNQGGNLARRCALKAGFSSQVPAFTIDQQCGSGLTAMISSANYIISGEASVICTGGVESTSQANIVLDSESYQPINRFKMAPEPYEDFDMGTIADMTALKYNIPRSVQDLYALNSHKKATQAIEGKLLENEVFPYQDEGFTISSDQTVRPKSSMEALSKLTPAFTTNGTATAGNSCPINDGASSIILSSTNNPFDFQGYYLGQTTIALSPSDFLLGPIKATEKLLQKFNLKLNDIEAIELNEAFASQAILFQNYFKLDDIKLNAYGGSLAFGHPYGATGGILISRLLNRLNQVQKPCLGIATLCVAGGMGISVLIGNQWYQK
>CP015906.1|ARE09049.1|1921626_1922868_+|Acyl-CoA-synthetase-(AMP-forming)/AMP-acid-ligase-II
MEKNKFNFSKLAALFTDYPALKIGEISYSYQQINDLIQRKLTDYSHSSKTVITLINDSPLNFIIDFLAIIESGNYPLVVDKSFKKKSFKFGLIPEDTLFLASTSGTTGPPKIYYRNWESWKMGFEVCDDLFHLSNSQALATTSPLTTSLGLHTLMCALYLGKTFLTITNPSQFINITENYSLFTVPTYLLNNLNELFALTSPEIIFLGGGTLSPEAINKVRKKLPQTQMIEFYGSSETSFISWQAVNEGKKTSSVGKLFPHVELTLGPKYRLTVKSPYLFSGYLNQPYPQSWTTDDLGTLKNNHLYLFGRRSDIIEHGANKIFPEEIERMAKDLCEDCIAFGVFDERYSQKIALLLLKPIEKEKLIKILAQRLPKYKLPQIYLETPTLNFTKNQKISRKELEKEYFRGVYHEL
>CP015906.1|ARE09048.1|1920912_1921482_-|Biotin-transporter-component
MTKNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPIILQNMGIMMAGGLLGPKYGTISVGAFLTLALIGLPVLTGGNGGAASFLGPSGGYRMAWLFTPFLIGFFLKKLQITASKNWIGELIIVLVFGVIFVDLVGAIWLSIQSNIPLITSLISNLVFIPGDCIKAILTVLIVRRLRKEGGFEMYFRK
>CP015906.1|ARE09047.1|1919935_1920907_-|biotin--[acetyl-CoA-carboxylase]-ligase-and-biotin-operon-repressor
MRTTKQFVLLKLLQQKGNWVSGDELAEELKLSRESIWKAINTLKRKGNQIESRKNLGYKYVGNESLDEDTINFYSGMKFEDKIFVFDEVTSTQELAKQYLSSHEVKQPFIFVANNQTEGHGRRGRNFYSPSDTGLYFSLILPNPSHDILKIGLLTTSTAVAVVKVLEQFYKDKNFQLKWVNDIYLGTYKVGGIITEAALDLESSSAGNFIMGIGLNLSTKDFPADLSEKAQGINPEFKIDRNQLLAEMAKEVINNFANYRQPDLIDEYRKRSLLFGKNVTLKLGTKAVNGKVEGISDDGSLILKAKSGELQTFKSGEVVKVDW
>CP015906.1|ARE09046.1|1918921_1919578_-|transcriptional-activator-TenA
MLFTELAREKSSIFWERSFEHPFIQGLVSGELAPEVFRYYLLQDRYYLEHFSKLYFLIAKKSASEEIQAHLRLNAEELKNGEIFVREGFFKELEIGEQEILETPVAPTAYHYVSHMYRQLIDGSVNSAIAGMLPCAWLYHEIGLRLIEVGSPNPLYQKWIETYASEEATVQIAKECDIINRLYQESDEQEQEQMLEAFLISSKMEADFWEMALVLEKW
>CP015906.1|ARE09056.1|1928018_1928477_-|NifU-like-protein-for-Fe-S-cluster-formation
MALSKLDNLYRAVILDHSSNPRHAGELQTGCMVDLNNPTCGDVIRLTVEFENDVISNIAFSGHGCTISTASASMMTVAVLGKTKEEAKELATIFSAMVTGETDERQEKLGDAQFLAGVSKFPARVKCSTLAWNALKKAIDVGEAQETVIHGE
>CP015906.1|ARE09057.1|1928592_1929084_-|hypothetical-protein
MINMLNWVASLPLWLATTFLFVVVFFRAQCTFWLGKLSYHGILKTKWGKKLEKNSETSAGILAIQKMGWPIIPLSFLTVGFQTAVQFGAGLTNWSWYKYTLAAIPGYLAWGFIYASGGLSLFRSLVQGSIGLLILFIIIILAVVIAANLVLRYIRKNGIKTDD
>CP015906.1|ARE09058.1|1929076_1930294_-|SUF-system-cysteine-desulfurase-SufS-subfamily
MLEGIKKDFPVLNQIVNDEPLVYLDNAATTQKPLKVLAAIKDYYENDNANVHRGVHTLAERATEKYEAAREKVRQFINAKSTKEVLFTRGTTTSINWVAQFAGQILKTGDEIVISIMEHHSNIVPWQEVAKKTGAILKFVYLKDGQLDMDDLRKKITNQTKFVSIAHVSNVLGTINPVEEITKIAHEHGAYMAVDGAQSTPHMAIDLQKMDVDFFAFSGHKMMGPTGIGVLYGKEELLNQFEPVEFGGEMIDFVYESHSTWTELPWKFEAGTPNIAGAIALGAAIDYIQELGIDQIHQHEIELIDYLMPKLQEIEGLKIYGPKDNVKRGGLIAFNIEGLHPHDVATALDMEGVAVRAGHHCAQPLLNYLETPATARASFYLYNTKADCDKLVEALKKTKEFFNLD
>CP015906.1|ARE09059.1|1930293_1931550_-|SUF-system-FeS-cluster-assembly-protein-SufD
MNQEILNFSQMHAEPAWLSDLRQKAALEFENLELPNIERVKINRWGLDHLSISENEEIGSVPTFTEIPNHPLLVQVGSQTVMEQMTPNLAEQGVIFTDFNSALTEIPELLEENFGSVVPFNESRLTAANTVTFNSGLVLYVPDGVEVLEPIESILMQEGSSEVPFNKRILIIVGKNAKVDYLERLETSDEQSSKAKANIVVEVIAKAGAQVKFAAIDRLGENVTASVVRRGLIGDNATVDWSVGVMNDGNVVADFDSDLKGNGSHSQIKVVGISTGHQTQGIDTRVTNFGLNSVGHILQNGVILDKGTLTFNAIGHIIKGAKNADAQQSSHVLMLSDKGRGDANPILLIDENEVTAGHAASVGQVDEEDLFYLQSRGLDEETAKRLVIRGFLGSVVSEIPVKSVQAEFIETIERKLGM
>CP015906.1|ARE09060.1|1931687_1932458_-|Iron-regulated-ABC-transporter-ATPase-subunit-SufC
MATLEIKNLHVAIEDKEILKGVNLVINTNEIHAIMGPNGTGKSTLSAAIMGNPNYSVTQGEVLFDGQNVLEMSVDERARLGLFLAMQYPSEIPGITNAEFLRAAMNAKRAEDDKVSVMEFIKKLDKNMEVLSMKEEMAERYLNEGFSGGEKKRNEILQLLMLEPTFAILDEIDSGLDIDALKVVAKGVNSMRGEKFGALIITHYQRLLDYITPDVVHIMMDGRVVKTGGAELAKRLETEGYVNIAEELGLEYKEEV
>CP015906.1|ARE09061.1|1932632_1933964_-|UDP-N-acetylmuramyl-pentapeptide-phosphotransferase/UDP-N-acetylglucosamine-1-phosphate-transferase
MVDTLKEIPFALKFLIVIIITFGISVILTPIMTFVSKAIGAVDKPNERRVNKKPMPSAGGLVIFIAFAIATLFILPHIVHNQPPIHSQPPVHGASHQPIQLVSYFSYIWPFIVGAGIVVLTGLIDDIKEISPKMKLLGLTVAASFIWFFTNARFDNLKIPFGGPLLIFPAWLSFIFTVFWILAITNAINLIDGLDGLASGVSIISLTTMGIVSYFFLPSPNVFLPITIFIMVAAIMGFFPYNYHPAIIYLGDTGALFLGFIISVASLQGLKNATAVAVLTPLLILGVPITDTIMAMVRRKLNRQSIATADKRHLHHRLMALGFTHRGAVLVIYGIASIFAFISILLQFSSRIGGILLVIACLFGLEIFIELVGILGENRQPVLKALKFVGNSSYRDKVLHSDEDADIDENEEDIGNHSMIDEEIDEPTQEFPIQNYRRSRNKK
>CP015906.1|ARE09062.1|1933966_1934668_-|Negative-regulator-of-genetic-competence-sporulation-and-motility
MKYEDINENTIKITLSFDDLTDYDIKLSDFFGNQEVIEQFFYELVDELGLENRFGNVGMLTFQIQPFPQGVHMIVHEEAMLGEGGEIPDDPEEFEELMTGFYNKLNEIGADMARERGITDFKPGLGLPGTKKDEAEQEPDFIYYSIRYEDIMSVLTGIKNVKFADEESEFYRYDGNFYLVVLDNQKEKGKMHVESTRSRMMEYGEATKMSREFLQEYGECLIATRALDVLRKI
>CP015906.1|ARE09063.1|1934797_1935532_-|amino-acid-ABC-transporter-ATP-binding-protein-PAAT-family
MNEYLIEIKNLHKYFGKNEVLKGLDIQIKKGEVVVMIGPSGSGKSTFLRTMNLLEKPTDGQVYFEGVNIADKSVDVFKHREKMGMVFQQFNLFPNMTVLENLCLAPVKTGKMTKEEAKKTAEDLLQRVGLSDKAEAYPQALSGGQQQRVAIARALAMNPDVMLFDEPTSALDPEMVGEVLAVMQELAKEGMTMVVVTHEMGFAKTVADRVLFMADGTIVEQGKPAQVFDSPKEKRTQDFLAKVL
>CP015906.1|ARE09064.1|1935531_1936218_-|Polar-amino-acid-ABC-transporter-permease-protein
MNFDFLPKYLPYFNDGMIVTILISAFVVLIGTLLGIVTALAKISKIAPLRWLANIYIEIFRGTPMLVQIMLGFGLMGSLSLPTFQVGILQQDLGRLIPGIIVISLNSGAYMAEIVRAGIEAVPLGQKEAAYSLGIRPRQAMATVILPQALRNILPAVGNEFVTIIKDSSLLYTIGVMEVFNGAQTVANLTYQTISPMLFVALYYFVVTFVVSRLLVLFEKKLGKGYAK
>CP015906.1|ARE09065.1|1936365_1937274_-|Diacylglycerol-kinase-family-protein
MTYYLLANPNSGAGKGARTLETLIPYLEKNNYEYRLFKTKAAGEEGALVRQILDLKNPDDHLVIIGGDGTISLVINELPEEEAFSYIPSGSGNDFARSLKLKLDPIESFEAARRGINHEIFIMNYQSKGLSGYALNNIGIGLDATIVKSANEGKLKQVLNKLKLGSFSYILTALHVLITKKPFPALIEVENQEISLENAFLMTFTKHPYFGGGVKISPEATNENADIHLVEYNKHHLLRTFSLIPSVLRGMHLKHPLFLHRVSPQFSVELAESQPVQIDGEIHELVAADRLSISTERRMIIY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

35339 : 49551

Lactococcus_phage(100.0%)

integrase,terminase

attL 34731:34758|attR 49660:49687

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
34731:34758	attL	NA	NA	NA	NA
ARE07149.1\|35339_35663_-	phage regulator	Q9AZI1	Lactococcus_phage	3.8e-52	100.0
ARE07150.1\|35687_36098_-	prophage protein	Q9AZI2	Lactococcus_phage	8.0e-71	100.0
ARE07151.1\|36094_36538_-\|terminase	Phage terminase small subunit	Q9AZI3	Lactococcus_phage	7.3e-62	100.0
ARE07152.1\|36670_37252_-	prophage protein	Q9AZI4	Lactococcus_phage	2.0e-99	100.0
ARE07153.1\|37487_39116_-	Phage DNA polymerase (ATPase domain)	Q9AZI5	Lactococcus_phage	0.0e+00	100.0
ARE07154.1\|39126_39921_-	prophage protein	Q9AZI6	Lactococcus_phage	5.4e-156	100.0
ARE07155.1\|39924_40254_-	prophage protein	Q9AZI7	Lactococcus_phage	5.2e-57	100.0
ARE07156.1\|40240_40435_-	prophage protein	Q9AZI8	Lactococcus_phage	2.3e-28	100.0
ARE07157.1\|40682_40922_-	prophage protein	Q9AZJ0	Lactococcus_phage	1.6e-39	100.0
ARE07158.1\|40964_41246_-	prophage protein	Q9AZJ1	Lactococcus_phage	8.5e-48	100.0
ARE07159.1\|41242_41494_-	Transcriptional regulator xre family	Q9AZJ2	Lactococcus_phage	1.7e-39	100.0
ARE07160.1\|41490_42012_-	prophage protein	Q9AZJ3	Lactococcus_phage	1.5e-93	100.0
ARE07161.1\|42015_42210_-	prophage protein	Q9AZJ4	Lactococcus_phage	7.9e-29	100.0
ARE07162.1\|42285_43026_-	Phage related anti-repressor protein	Q9AZJ5	Lactococcus_phage	4.1e-134	100.0
ARE07163.1\|43054_43252_-	prophage protein	Q9AZJ6	Lactococcus_phage	1.3e-26	100.0
ARE07164.1\|43512_43899_+	Transcriptional regulator xre family	Q9AZJ7	Lactococcus_phage	7.3e-66	100.0
ARE07165.1\|43908_44463_+	prophage protein	Q9AZJ8	Lactococcus_phage	8.1e-111	100.0
ARE07166.1\|44573_44804_+	prophage protein	Q9AZK0	Lactococcus_phage	3.7e-17	100.0
ARE07167.1\|44876_45071_+	prophage protein	Q9AZK1	Lactococcus_phage	6.0e-29	100.0
ARE07168.1\|45222_45465_+	prophage protein	Q9AZK2	Lactococcus_phage	4.6e-34	100.0
ARE07169.1\|45612_45825_+	prophage protein	Q9AZK3	Lactococcus_phage	3.1e-34	100.0
ARE07170.1\|46291_46618_+	prophage protein	NA	NA	NA	NA
ARE07171.1\|47525_47690_+	prophage protein	Q9AZK6	Lactococcus_phage	7.9e-22	100.0
ARE07172.1\|47811_48117_+	prophage protein	Q9AZK7	Lactococcus_phage	8.3e-49	100.0
ARE07173.1\|48366_49551_+\|integrase	Phage integrase	Q9AZK8	Lactococcus_phage	1.9e-226	100.0
49660:49687	attR	NA	NA	NA	NA

DBSCAN-SWA_2

136175 : 177897

Shigella_phage(20.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE07267.1\|136175_136721_+\|protease	metal-dependent membrane protease	NA	NA	NA	NA
ARE07268.1\|136773_137454_+\|protease	metal-dependent membrane protease	NA	NA	NA	NA
ARE07269.1\|137622_137913_+	Transposase	NA	NA	NA	NA
ARE07270.1\|137930_138770_+	Transposase	U5P429	Shigella_phage	1.6e-46	41.0
ARE07271.1\|138826_139384_+	Transposase	NA	NA	NA	NA
ARE07272.1\|139380_140199_+	Transposase	A0A1B1P773	Bacillus_phage	4.7e-54	43.7
ARE07273.1\|140256_141096_-	Transposase	U5P429	Shigella_phage	1.6e-46	41.0
ARE07274.1\|141113_141404_-	Transposase	NA	NA	NA	NA
ARE07275.1\|141708_141975_+	hypothetical protein	NA	NA	NA	NA
ARE07276.1\|141974_142406_+	RNase H-like ribonuclease	NA	NA	NA	NA
ARE07277.1\|142558_142882_+	hypothetical protein	NA	NA	NA	NA
ARE07278.1\|142912_143464_-	hypothetical protein	NA	NA	NA	NA
ARE07279.1\|143558_144344_-	carbonyl reductase	NA	NA	NA	NA
ARE07280.1\|144363_144609_-	hypothetical protein	NA	NA	NA	NA
ARE07281.1\|144618_145404_-	Short-chain dehydrogenase (D-alanine transfer protein)	NA	NA	NA	NA
ARE07282.1\|145515_146061_+	transcriptional regulator TetR family	NA	NA	NA	NA
ARE07283.1\|146142_148089_-	1,4-Alpha-glucan branching enzyme	NA	NA	NA	NA
ARE07284.1\|148215_148569_-	hypothetical protein	NA	NA	NA	NA
ARE07285.1\|149007_154959_+	membrane protein	NA	NA	NA	NA
ARE07286.1\|155734_156775_+	hypothetical protein	NA	NA	NA	NA
ARE07287.1\|156829_157720_-\|transposase	transposase for insertion sequence element IS982B	NA	NA	NA	NA
ARE07288.1\|157873_159454_-	ABC transporter permease protein	NA	NA	NA	NA
ARE07289.1\|159434_160199_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.5e-27	28.4
ARE07290.1\|160321_161221_-	permease of the drug/metabolite transporter (DMT) superfamily	NA	NA	NA	NA
ARE07291.1\|161371_162262_+	Transposase	NA	NA	NA	NA
ARE07292.1\|162266_162596_-	Zn peptidase	NA	NA	NA	NA
ARE07293.1\|162621_163002_-	single-strand binding protein	NA	NA	NA	NA
ARE07294.1\|163015_163381_-	hypothetical protein	NA	NA	NA	NA
ARE07295.1\|163451_163718_-	repressor	NA	NA	NA	NA
ARE07296.1\|163731_164529_-	plasmid partition protein	E2ELL2	Clostridium_phage	1.8e-18	38.3
ARE07297.1\|164632_164917_-	invertase/resolvase/recombinase	A0A1J1J8Z4	Escherichia_phage	2.2e-11	44.6
ARE07298.1\|165062_166049_+	UDP-glucose 4-epimerase	A0A2K9L5H6	Tupanvirus	3.4e-51	36.0
ARE07299.1\|166195_166492_-	invertase/resolvase/recombinase	A0A0A8WIK3	Clostridium_phage	1.3e-11	42.7
ARE07300.1\|166698_167049_-	hypothetical protein	A0A182BQ76	Lactococcus_phage	1.8e-10	72.3
ARE07301.1\|167038_168505_-	DNA polymerase IV	Q6DMX4	Streptococcus_phage	7.7e-124	51.5
ARE07302.1\|168700_169813_-	hypothetical protein	NA	NA	NA	NA
ARE07303.1\|170066_171386_+\|transposase	IS4 transposase	NA	NA	NA	NA
ARE07304.1\|171680_173000_+\|transposase	IS4 transposase	NA	NA	NA	NA
ARE07305.1\|173250_174864_+	ATPase, AAA type	NA	NA	NA	NA
ARE07306.1\|174866_176216_+	hypothetical protein	NA	NA	NA	NA
ARE07307.1\|176577_177897_+\|transposase	IS4 transposase	NA	NA	NA	NA

DBSCAN-SWA_3

294326 : 302433

Catovirus(28.57%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE07431.1\|294326_295163_+\|holin	Lipopolysacchare cholinephosphotransferase LicD1	A0A1V0SAS8	Catovirus	1.3e-06	31.6
ARE07432.1\|295152_296154_+	Glycosyltransferase	A0A1V0SAH6	Catovirus	5.0e-10	33.7
ARE07433.1\|296155_297016_+	Glycosyltransferase	NA	NA	NA	NA
ARE07434.1\|297067_297907_-	Transposase	A0A1P8CWQ3	Bacillus_phage	9.3e-50	41.4
ARE07435.1\|297918_298179_-	Transposase	A0A1P8CWP5	Bacillus_phage	8.4e-10	37.6
ARE07436.1\|298290_299493_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	3.9e-33	37.6
ARE07437.1\|299503_299932_+	glycerol-3-phosphate cytidylyltransferase	A0A221SAS8	Streptomyces_phage	4.2e-14	39.3
ARE07438.1\|300057_300570_-	hypothetical protein	NA	NA	NA	NA
ARE07439.1\|300951_302433_+	inosine-5-monophosphate dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.1e-97	41.3

DBSCAN-SWA_4

475059 : 487190

Streptococcus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE07608.1\|475059_475377_+	Thiol-disulfide isomerase and thioredoxin	A0A0K2FIM3	Achromobacter_phage	4.5e-05	30.4
ARE07609.1\|475462_476083_+	EMAP domain	NA	NA	NA	NA
ARE07610.1\|476251_477592_+	NADH oxidase H2O-forming	NA	NA	NA	NA
ARE07611.1\|477681_478071_+	single-stranded DNA-binding protein	A0A0K0MWE1	Streptococcus_phage	1.4e-24	45.0
ARE07612.1\|478190_478475_+	Co-chaperonin GroES (HSP10)	A0A221S386	uncultured_virus	3.1e-13	44.1
ARE07613.1\|478562_480191_+	Chaperonin GroEL (HSP60 family)	A0A219YK78	uncultured_virus	4.9e-156	56.8
ARE07614.1\|480236_481049_-	Metal-dependent hydrolase of the beta-lactamase superfamily I	A0A0C5AJ83	Bacteriophage	3.1e-34	38.1
ARE07615.1\|481219_482662_-	PAS/PAC sensor signal transduction histidine kinase	W8CYF6	Bacillus_phage	1.4e-32	33.0
ARE07616.1\|482654_483356_-	DNA-binding response regulator OmpR family (Rec-wHTH domains)	W8CYM9	Bacillus_phage	1.2e-42	39.7
ARE07617.1\|483533_484169_+	thymidylate kinase	M1PSC7	Streptococcus_phage	5.4e-74	65.0
ARE07618.1\|484301_485162_+	DNA polymerase III delta prime subunit	M1NSC1	Streptococcus_phage	5.0e-67	45.2
ARE07619.1\|485213_485996_+	Phosphorelay inhibitor	NA	NA	NA	NA
ARE07620.1\|485988_486315_+	Regulator of replication initiation timing	NA	NA	NA	NA
ARE07621.1\|486314_487190_+	methyltransferase	M1PLC5	Streptococcus_phage	8.7e-99	65.4

DBSCAN-SWA_5

526902 : 562911

Lactococcus_phage(100.0%)

protease,capsid,transposase,holin,integrase,head,tail

attL 526810:526840|attR 563731:563761

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
526810:526840	attL	NA	NA	NA	NA
ARE07656.1\|526902_528036_-\|integrase	Phage integrase	Q9AZR0	Lactococcus_phage	2.8e-214	100.0
ARE07657.1\|528158_528737_-	prophage protein	Q9AZQ9	Lactococcus_phage	9.8e-99	100.0
ARE07658.1\|528820_529633_-	Transcriptional regulator xre family	Q9AZQ8	Lactococcus_phage	1.9e-153	100.0
ARE07659.1\|529885_530056_+	prophage protein	Q9AZQ7	Lactococcus_phage	1.0e-24	100.0
ARE07660.1\|530087_530321_+	prophage protein	Q9AZQ6	Lactococcus_phage	5.0e-38	100.0
ARE07661.1\|530429_530579_+	prophage protein	Q9AZQ5	Lactococcus_phage	9.1e-17	100.0
ARE07662.1\|530564_530735_-	prophage protein	NA	NA	NA	NA
ARE07663.1\|530838_531081_+	prophage protein	Q77JL3	Lactococcus_phage	5.2e-38	100.0
ARE07664.1\|531092_531848_+	prophage protein	Q9AZQ4	Lactococcus_phage	1.1e-139	100.0
ARE07665.1\|531860_532190_+	prophage protein	Q9AZQ3	Lactococcus_phage	8.1e-58	100.0
ARE07666.1\|532190_532361_+	prophage protein	A0A1P8BME6	Lactococcus_phage	8.7e-24	100.0
ARE07667.1\|532404_532578_+	prophage protein	Q9AZQ1	Lactococcus_phage	8.0e-25	100.0
ARE07668.1\|532676_533483_+	prophage protein, recombinase	Q9AZQ0	Lactococcus_phage	6.2e-144	100.0
ARE07669.1\|533482_534259_+	prophage protein	Q9AZP9	Lactococcus_phage	2.6e-147	100.0
ARE07670.1\|534594_535263_+	prophage protein	Q9AZP8	Lactococcus_phage	1.1e-109	100.0
ARE07671.1\|535272_536157_+\|transposase	transposase helper protein for IS712H	Q9AZP7	Lactococcus_phage	1.6e-164	100.0
ARE07672.1\|536153_536318_+	prophage protein	Q9AZP6	Lactococcus_phage	2.5e-23	100.0
ARE07673.1\|536307_536718_+	prophage protein	Q9AZP5	Lactococcus_phage	2.2e-76	100.0
ARE07674.1\|536825_536990_+	prophage protein	Q9AZP4	Lactococcus_phage	4.9e-24	100.0
ARE07675.1\|536964_537327_+	prophage protein	Q9AZP3	Lactococcus_phage	1.5e-60	100.0
ARE07676.1\|537520_537727_+	prophage protein	Q9MC26	Lactococcus_phage	2.6e-30	100.0
ARE07677.1\|537719_537992_+	prophage protein	Q9AYV0	Lactococcus_phage	5.3e-47	100.0
ARE07678.1\|537994_538543_+	prophage protein	Q9AYU5	Lactococcus_phage	1.4e-102	100.0
ARE07679.1\|538539_538959_+	deoxyuridine 5-triphosphate nucleotidohydrolase	Q9AZP1	Lactococcus_phage	3.0e-73	100.0
ARE07680.1\|538958_539249_+	prophage protein	Q9AZP0	Lactococcus_phage	2.5e-47	100.0
ARE07681.1\|539245_539410_+	prophage protein	Q9AZN9	Lactococcus_phage	4.9e-24	100.0
ARE07682.1\|539458_539602_+	prophage protein	Q9AZN8	Lactococcus_phage	2.1e-18	100.0
ARE07683.1\|539962_540148_+	prophage protein	Q9AZN6	Lactococcus_phage	1.6e-26	100.0
ARE07684.1\|540200_540410_-	prophage protein	NA	NA	NA	NA
ARE07685.1\|540622_540916_+	prophage protein	Q9AZN4	Lactococcus_phage	9.7e-47	100.0
ARE07686.1\|541027_541273_+	prophage protein	Q9AZN3	Lactococcus_phage	4.5e-37	100.0
ARE07687.1\|541317_541707_+	prophage protein	Q9AZN2	Lactococcus_phage	5.8e-63	100.0
ARE07688.1\|541708_542107_+	prophage protein	Q9AZN1	Lactococcus_phage	2.4e-64	100.0
ARE07689.1\|542432_542855_+	prophage protein	Q9AZM9	Lactococcus_phage	8.5e-52	100.0
ARE07690.1\|543092_543596_+	prophage protein	Q9AZM8	Lactococcus_phage	3.1e-93	100.0
ARE07691.1\|543712_544165_+	prophage protein, terS	Q9AZM7	Lactococcus_phage	1.3e-82	100.0
ARE07692.1\|544164_545979_+	prophage protein, terL	Q9AZM6	Lactococcus_phage	0.0e+00	100.0
ARE07693.1\|545987_546152_+	prophage protein	Q9AZM5	Lactococcus_phage	1.9e-20	100.0
ARE07694.1\|546148_547228_+	prophage protein	Q9AZM4	Lactococcus_phage	2.4e-199	100.0
ARE07695.1\|547227_547815_+\|head,protease	prophage protein, prohead protease	Q9AZM3	Lactococcus_phage	4.4e-107	100.0
ARE07696.1\|547804_549118_+\|capsid	prophage protein, capsid protein	Q9AZM2	Lactococcus_phage	2.0e-200	100.0
ARE07697.1\|549128_549434_+	prophage protein	Q9AZM1	Lactococcus_phage	4.4e-50	100.0
ARE07698.1\|549420_549756_+\|head,tail	head-tail joining protein	Q9AZM0	Lactococcus_phage	5.9e-56	100.0
ARE07699.1\|549755_550238_+\|tail	prophage protein, tail component	Q9AZL9	Lactococcus_phage	2.5e-84	100.0
ARE07700.1\|550234_550618_+	prophage protein	Q9AZL8	Lactococcus_phage	2.9e-59	95.1
ARE07701.1\|550630_551236_+	prophage protein, small major structural protein	Q9AZL7	Lactococcus_phage	4.9e-109	100.0
ARE07702.1\|551295_551640_+	prophage protein	Q9AZL6	Lactococcus_phage	1.2e-27	100.0
ARE07703.1\|551845_555649_+	prophage protein, TMP	Q9AZL5	Lactococcus_phage	0.0e+00	100.0
ARE07704.1\|555651_557187_+	prophage protein, DIT	Q9AZL3	Lactococcus_phage	4.8e-294	100.0
ARE07705.1\|557186_561512_+	prophage protein, TAL	Q9AZL2	Lactococcus_phage	0.0e+00	100.0
ARE07706.1\|561531_561858_+	prophage protein	Q9AZL1	Lactococcus_phage	3.9e-52	100.0
ARE07707.1\|561844_562132_+\|holin	prophage protein, holin	Q9AZL0	Lactococcus_phage	5.6e-47	100.0
ARE07708.1\|562131_562911_+	prophage protein, lysin	Q9AZK9	Lactococcus_phage	2.1e-128	100.0
563731:563761	attR	NA	NA	NA	NA

DBSCAN-SWA_6

582004 : 600152

Lactococcus_phage(89.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE07726.1\|582004_582280_+	bacterial nucleoid protein Hbs	A7KV42	Bacillus_phage	1.6e-22	67.4
ARE07727.1\|582389_583538_-	Phage Integrase	Q9AZF9	Lactococcus_phage	1.4e-210	100.0
ARE07728.1\|583661_584153_-	prophage protein	Q9AZF8	Lactococcus_phage	3.7e-83	100.0
ARE07729.1\|584206_584503_-	prophage protein	Q9AZF7	Lactococcus_phage	3.3e-50	100.0
ARE07730.1\|584549_585137_-	prophage protein	Q9AZF6	Lactococcus_phage	3.6e-109	100.0
ARE07731.1\|585148_585517_-	Transcriptional regulator xre family	Q9AZF5	Lactococcus_phage	1.8e-66	100.0
ARE07732.1\|585810_586002_+	prophage protein	Q9AZF4	Lactococcus_phage	3.3e-27	98.4
ARE07733.1\|586017_586278_+	prophage protein	Q9AZF3	Lactococcus_phage	8.6e-47	100.0
ARE07734.1\|586436_586631_+	prophage protein	Q9AZF2	Lactococcus_phage	1.0e-28	100.0
ARE07735.1\|586635_587061_+	prophage protein	Q9AZF1	Lactococcus_phage	2.6e-77	100.0
ARE07736.1\|587095_587335_+	prophage protein	Q9AZF0	Lactococcus_phage	3.0e-38	98.7
ARE07737.1\|587331_587586_+	prophage protein	Q9AZE9	Lactococcus_phage	3.7e-42	100.0
ARE07738.1\|587582_587777_+	prophage protein	Q9AZE8	Lactococcus_phage	2.3e-28	100.0
ARE07739.1\|587763_588090_+	prophage protein	Q9AZE7	Lactococcus_phage	1.1e-54	100.0
ARE07740.1\|588097_588676_+	prophage protein	Q9AZE6	Lactococcus_phage	1.2e-91	100.0
ARE07741.1\|588668_590111_+	prophage protein	Q9AZE5	Lactococcus_phage	1.6e-278	100.0
ARE07742.1\|590262_590847_+	prophage protein	Q9AZE4	Lactococcus_phage	2.9e-106	100.0
ARE07743.1\|591023_591209_+	prophage protein	Q9AZE3	Lactococcus_phage	7.0e-27	100.0
ARE07744.1\|591235_591844_+	prophage protein	Q9AZE2	Lactococcus_phage	1.2e-102	100.0
ARE07745.1\|591852_592443_+	prophage protein	Q9AZE1	Lactococcus_phage	2.6e-107	99.5
ARE07746.1\|592658_592988_+	prophage protein	Q9AZE0	Lactococcus_phage	9.3e-54	100.0
ARE07747.1\|593088_593409_+	prophage protein	Q9AZD9	Lactococcus_phage	3.8e-52	100.0
ARE07748.1\|593732_594005_-	prophage protein	NA	NA	NA	NA
ARE07749.1\|594163_594343_+	prophage protein	Q9AZD7	Lactococcus_phage	1.2e-23	100.0
ARE07750.1\|594511_595000_+	prophage protein	Q9AZD6	Lactococcus_phage	5.0e-88	100.0
ARE07751.1\|594965_595532_+	prophage protein	Q9AZD5	Lactococcus_phage	4.6e-101	100.0
ARE07752.1\|596780_596981_+	cold shock-like protein cspE	Q9AZD3	Lactococcus_phage	6.7e-31	100.0
ARE07753.1\|597521_598019_-	Acetyltransferase GNAT family	NA	NA	NA	NA
ARE07754.1\|598165_598675_+	6-O-methylguanine-DNA methyltransferase	M1PFU9	Streptococcus_phage	4.3e-26	42.1
ARE07755.1\|598688_599249_+	methylphosphotriester-DNA alkyltransferase	NA	NA	NA	NA
ARE07756.1\|599342_600152_+	ABC-type multidrug transport system ATPase component	W6JKT0	Anomala_cuprea_entomopoxvirus	2.2e-19	36.7

DBSCAN-SWA_7

1082821 : 1096605

Enterococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE08207.1\|1082821_1083514_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	3.6e-31	34.4
ARE08208.1\|1083506_1084442_+	cell division protein ftsX-like protein	NA	NA	NA	NA
ARE08209.1\|1084543_1085521_-	ribonucleoside-diphosphate reductase class Ib beta subunit	A0A096XT60	Enterococcus_phage	2.4e-118	66.2
ARE08210.1\|1085870_1088039_-	ribonucleoside-diphosphate reductase class Ib alpha subunit	A8E2R1	Enterococcus_phage	3.0e-257	61.1
ARE08211.1\|1088174_1088597_-	Ribonucleotide reduction protein	A0A142F1R4	Bacillus_phage	2.3e-12	37.3
ARE08212.1\|1088598_1088817_-	ribonucleoside-diphosphate reductase class Ib glutaredoxin subunit	C3U2K9	Lactococcus_phage	7.6e-12	47.6
ARE08213.1\|1088990_1089632_-	acyl-phosphate glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
ARE08214.1\|1089906_1091841_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	5.4e-125	43.4
ARE08215.1\|1092576_1093410_+	DNA polymerase III epsilon subunit related 3-5 exonuclease	A0A0K2SUJ2	Clostridium_phage	3.1e-21	39.4
ARE08216.1\|1093406_1093856_+	Acetyltransferase GNAT family	NA	NA	NA	NA
ARE08217.1\|1094130_1096605_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	4.2e-98	32.2

DBSCAN-SWA_8

1105263 : 1113531

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE08226.1\|1105263_1106352_+	riboflavin biosynthesis protein RibD	A0A1V0SE20	Indivirus	2.9e-51	39.1
ARE08227.1\|1106351_1107002_+	Riboflavin synthase alpha chain	A0A2H4PQS5	Staphylococcus_phage	1.2e-41	43.6
ARE08228.1\|1107010_1108207_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.3e-110	51.0
ARE08229.1\|1108234_1108699_+	Riboflavin synthase beta chain	A0A2H4PQS3	Staphylococcus_phage	5.3e-39	53.0
ARE08230.1\|1108801_1109254_+	signal peptidase II Aspartic peptidase MEROPS family A08	NA	NA	NA	NA
ARE08231.1\|1109314_1110220_+	ribosomal large subunit pseudouridine synthase D	A0A2H4UV25	Bodo_saltans_virus	5.4e-11	28.2
ARE08232.1\|1110366_1110810_+	hypothetical protein	NA	NA	NA	NA
ARE08233.1\|1111000_1112572_+	hypothetical protein	NA	NA	NA	NA
ARE08234.1\|1112574_1113531_+	Glycosyltransferase	I1TED8	Salmonella_phage	3.1e-49	37.5

DBSCAN-SWA_9

1116861 : 1159657

Lactococcus_phage(96.67%)

terminase,capsid,transposase,holin,integrase

attL 1110873:1110889|attR 1157070:1157086

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1110873:1110889	attL	NA	NA	NA	NA
ARE08239.1\|1116861_1117752_-\|transposase	transposase for insertion sequence element IS982B	NA	NA	NA	NA
ARE08240.1\|1118058_1119876_+	glucosamine--fructose-6-phosphate aminotransferase	M1HVL7	Paramecium_bursaria_Chlorella_virus	6.0e-94	36.9
ARE08241.1\|1120006_1120687_+	DNA repair protein RadC	NA	NA	NA	NA
ARE08242.1\|1120885_1122010_-\|integrase	Phage integrase	Q9B016	Lactococcus_phage	1.0e-213	100.0
ARE08243.1\|1122132_1122678_-	prophage protein	Q9B015	Lactococcus_phage	2.6e-93	99.4
ARE08244.1\|1122734_1123172_-	prophage protein	Q9B014	Lactococcus_phage	1.1e-81	100.0
ARE08245.1\|1123168_1123711_-	cI-like repressor	Q9B013	Lactococcus_phage	3.1e-91	100.0
ARE08246.1\|1123879_1124098_+	prophage protein	O48504	Lactococcus_phage	2.9e-35	100.0
ARE08247.1\|1124134_1124878_+	Phage anti-repressor protein	Q9B012	Lactococcus_phage	2.1e-138	100.0
ARE08248.1\|1124890_1125226_+	prophage protein	Q38331	Lactococcus_phage	1.3e-58	100.0
ARE08249.1\|1125222_1125351_+	prophage protein	Q9B011	Lactococcus_phage	1.1e-15	100.0
ARE08250.1\|1125554_1125830_-	prophage protein	Q9AYU7	Lactococcus_phage	3.5e-46	98.9
ARE08251.1\|1125932_1126148_+	prophage protein	Q9XJE1	Lactococcus_phage	3.1e-34	100.0
ARE08252.1\|1126263_1126782_+	prophage protein	Q9XJE3	Lactococcus_phage	6.3e-89	100.0
ARE08253.1\|1126790_1127414_+	prophage topoisomerase	Q9B009	Lactococcus_phage	1.9e-116	100.0
ARE08254.1\|1127413_1127866_+	single-strand binding protein	Q9B008	Lactococcus_phage	4.6e-80	100.0
ARE08255.1\|1127990_1128773_+	prophage protein	A5GYR3	Lactococcus_phage	3.7e-125	100.0
ARE08256.1\|1128772_1129498_+	prophage protein	Q9XJE7	Lactococcus_phage	1.8e-134	100.0
ARE08257.1\|1129494_1129884_+	Holliday junction resolvase	R9QLL1	Lactococcus_phage	3.2e-69	100.0
ARE08258.1\|1129886_1130081_+	prophage protein	Q9B005	Lactococcus_phage	6.7e-28	100.0
ARE08259.1\|1130424_1130691_+	prophage protein	Q9B003	Lactococcus_phage	6.3e-45	100.0
ARE08260.1\|1130712_1130892_+	prophage protein	Q9AYU3	Lactococcus_phage	9.2e-24	100.0
ARE08261.1\|1130881_1131451_+	prophage protein	Q9B002	Lactococcus_phage	2.8e-90	100.0
ARE08262.1\|1131644_1131851_+	prophage protein	Q9MC26	Lactococcus_phage	2.6e-30	100.0
ARE08263.1\|1131843_1132116_+	prophage protein	Q9AYV0	Lactococcus_phage	5.3e-47	100.0
ARE08264.1\|1132118_1132667_+	prophage protein	Q9AYU5	Lactococcus_phage	1.4e-102	100.0
ARE08265.1\|1132663_1133083_+	deoxyuridine 5-triphosphate nucleotidohydrolase	Q9B001	Lactococcus_phage	5.1e-73	100.0
ARE08266.1\|1133085_1133583_+	prophage protein	Q9B000	Lactococcus_phage	2.2e-91	100.0
ARE08267.1\|1133575_1133920_+	prophage protein	Q9AZZ9	Lactococcus_phage	1.7e-58	100.0
ARE08268.1\|1133941_1134106_+	prophage protein	Q9AZZ8	Lactococcus_phage	4.9e-24	100.0
ARE08269.1\|1134152_1134338_+	prophage protein	Q9AZZ7	Lactococcus_phage	2.4e-27	100.0
ARE08270.1\|1134379_1134553_+	prophage protein	Q9AZZ6	Lactococcus_phage	1.9e-29	100.0
ARE08271.1\|1134553_1134853_+	prophage protein	Q9AZZ5	Lactococcus_phage	4.8e-49	100.0
ARE08272.1\|1134849_1135032_+	prophage protein	Q9AZZ4	Lactococcus_phage	4.3e-29	100.0
ARE08273.1\|1135028_1135166_+	prophage protein	Q9AZZ3	Lactococcus_phage	1.2e-15	100.0
ARE08274.1\|1135395_1135689_+	prophage protein	Q9AZZ2	Lactococcus_phage	4.4e-47	100.0
ARE08275.1\|1135766_1136168_+	prophage protein	Q9AZZ1	Lactococcus_phage	5.6e-69	100.0
ARE08276.1\|1136431_1136731_+	prophage protein	Q9AZZ0	Lactococcus_phage	9.6e-58	100.0
ARE08277.1\|1136822_1137191_+\|terminase	prophage terminase terS	Q9AZY9	Lactococcus_phage	1.8e-61	100.0
ARE08278.1\|1137183_1138953_+\|terminase	prophage terminase terL	Q9AZY8	Lactococcus_phage	0.0e+00	99.8
ARE08279.1\|1138930_1140172_+	prophage protein	Q9AZY7	Lactococcus_phage	2.4e-235	100.0
ARE08280.1\|1140186_1140783_+	prophage protein	Q9AZY6	Lactococcus_phage	5.5e-105	100.0
ARE08281.1\|1140754_1141948_+\|capsid	prophage protein, capsid protein	Q9AZY5	Lactococcus_phage	3.6e-172	100.0
ARE08282.1\|1142002_1142860_+	prophage protein	Q9AZY4	Lactococcus_phage	1.1e-167	100.0
ARE08283.1\|1142852_1143134_+	prophage protein	Q9AZY3	Lactococcus_phage	6.7e-45	100.0
ARE08284.1\|1143120_1143438_+	prophage protein	Q9AZY2	Lactococcus_phage	4.6e-50	99.0
ARE08285.1\|1143427_1143799_+	prophage protein	Q9AZY1	Lactococcus_phage	2.5e-63	100.0
ARE08286.1\|1143795_1144113_+	prophage protein	Q9AZY0	Lactococcus_phage	7.5e-53	100.0
ARE08287.1\|1144130_1144739_+	prophage protein	Q9AZX9	Lactococcus_phage	3.3e-105	100.0
ARE08288.1\|1144748_1145108_+	prophage protein	Q9AZX8	Lactococcus_phage	2.7e-62	100.0
ARE08289.1\|1145324_1147586_+	phage TMP	Q9AZX7	Lactococcus_phage	0.0e+00	100.0
ARE08290.1\|1147586_1148336_+	phage DIT	Q9AZX6	Lactococcus_phage	1.5e-144	99.6
ARE08291.1\|1148332_1151017_+	phage TAL	Q9AZX5	Lactococcus_phage	0.0e+00	99.9
ARE08292.1\|1151029_1152631_+	prophage protein	Q9AZX4	Lactococcus_phage	0.0e+00	100.0
ARE08293.1\|1152623_1153454_+	prophage protein	Q9AZX3	Lactococcus_phage	3.1e-154	100.0
ARE08294.1\|1153512_1153920_+	prophage protein	Q9AZX2	Lactococcus_phage	2.3e-70	100.0
ARE08295.1\|1153906_1154245_+	prophage protein	Q9AZX1	Lactococcus_phage	1.3e-55	100.0
ARE08296.1\|1154246_1154474_+	prophage protein	Q9AZX0	Lactococcus_phage	1.6e-33	100.0
ARE08297.1\|1154499_1154724_+	prophage protein	Q9AZW9	Lactococcus_phage	1.0e-32	100.0
ARE08298.1\|1154736_1155024_+\|holin	phage holin	Q9AZW8	Lactococcus_phage	9.5e-47	100.0
ARE08299.1\|1155023_1155803_+	phage lysin	Q9AZW7	Lactococcus_phage	5.5e-129	100.0
ARE08300.1\|1156304_1156955_-	AT-rich DNA-binding protein	NA	NA	NA	NA
ARE08301.1\|1157179_1157572_+	Arsenate reductase related protein glutaredoxin family	NA	NA	NA	NA
1157070:1157086	attR	NA	NA	NA	NA
ARE08302.1\|1157749_1159657_+	ATPase component of ABC transporter	A0A2K9L3Z8	Tupanvirus	1.6e-49	28.9

DBSCAN-SWA_10

1602507 : 1612808

Synechococcus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE08720.1\|1602507_1604064_-	IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.3e-70	45.6
ARE08721.1\|1604239_1604782_-	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	1.8e-09	29.9
ARE08722.1\|1604918_1605956_-	Saccharopine dehydrogenase related protein	NA	NA	NA	NA
ARE08723.1\|1606086_1606617_+	Transcriptional regulator TetR family	NA	NA	NA	NA
ARE08724.1\|1606667_1608257_-	Multidrug resistance ABC transporter ATP-binding and permease protein	W8CYL7	Bacillus_phage	3.0e-09	22.2
ARE08725.1\|1608423_1608972_-	formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.8e-18	31.1
ARE08726.1\|1608999_1610016_-	Phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FGG1	Synechococcus_phage	6.4e-61	40.4
ARE08727.1\|1610204_1612808_-\|protease	ATP-dependent Clp protease chaperonin ATPase ClpB	K4FB40	Cronobacter_phage	9.4e-125	32.8

DBSCAN-SWA_11

1688200 : 1727896

Lactococcus_phage(90.38%)

terminase,capsid,portal,holin,integrase

attL 1695620:1695635|attR 1727968:1727983

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE08809.1\|1688200_1688380_-	hypothetical protein	Q9AZG2	Lactococcus_phage	2.3e-22	94.9
ARE08810.1\|1688681_1689932_-	prophage lysin	B5SP49	Lactococcus_phage	9.9e-189	91.4
ARE08811.1\|1689928_1690153_-\|holin	prophage holin	A0A059NT58	Lactococcus_phage	2.7e-28	86.5
ARE08812.1\|1690139_1690445_-	prophage protein	A0A1P8BKN8	Lactococcus_phage	8.9e-51	96.0
ARE08813.1\|1690572_1691766_-	prophage protein	NA	NA	NA	NA
ARE08814.1\|1691805_1692624_-	prophage protein	A0A1L2JXK8	Streptococcus_phage	2.0e-137	88.6
ARE08815.1\|1692636_1695390_-	prophage TAL	A0A1P8BMA1	Lactococcus_phage	0.0e+00	96.4
ARE08816.1\|1695389_1696151_-	prophage DIT	Q9AYV7	Lactococcus_phage	8.8e-140	98.0
1695620:1695635	attL	NA	NA	NA	NA
ARE08817.1\|1696164_1698978_-	prophage TMP	Q9G097	Lactococcus_phage	3.0e-286	95.9
ARE08818.1\|1698992_1699313_-	prophage protein	Q9AZ59	Lactococcus_phage	5.8e-53	100.0
ARE08819.1\|1699351_1699687_-	prophage protein	Q77RZ7	Lactococcus_phage	4.2e-54	99.1
ARE08820.1\|1699802_1700300_-	prophage protein	A0A1P8BKV6	Lactococcus_phage	2.4e-85	97.0
ARE08821.1\|1700310_1700700_-	prophage protein	A0A1P8BKT6	Lactococcus_phage	5.6e-66	99.2
ARE08822.1\|1700696_1701035_-	prophage protein	Q77K21	Lactococcus_phage	7.3e-54	97.3
ARE08823.1\|1701031_1701343_-	prophage protein	A0A1P8BLP2	Lactococcus_phage	1.5e-53	95.1
ARE08824.1\|1701339_1701672_-	prophage protein	A0A1P8BMC5	Lactococcus_phage	9.3e-54	99.1
ARE08825.1\|1701693_1701894_-	surface protein (Ig-like domains)	A0A1P8BLK6	Lactococcus_phage	1.3e-21	90.3
ARE08826.1\|1701959_1702823_-\|capsid	capsid protein	A0A1P8BKP7	Lactococcus_phage	4.2e-154	97.9
ARE08827.1\|1702841_1703471_-	prophage protein	Q9AYW7	Lactococcus_phage	1.9e-63	82.7
ARE08828.1\|1703655_1704003_+	prophage protein	NA	NA	NA	NA
ARE08829.1\|1703962_1704094_-	prophage protein	NA	NA	NA	NA
ARE08830.1\|1704100_1705141_-	Phage Mu protein F like protein	A0A1P8BM04	Lactococcus_phage	4.8e-189	97.7
ARE08831.1\|1705144_1706521_-\|portal	Phage portal protein SPP1 Gp6-like protein	Q9AZ65	Lactococcus_phage	8.8e-239	93.0
ARE08832.1\|1706541_1707924_-	prophage protein	Q8LTR4	Lactococcus_phage	3.4e-267	98.5
ARE08833.1\|1707916_1708327_-\|terminase	Phage terminase small subunit	Q9AZ67	Lactococcus_phage	1.6e-66	98.5
ARE08834.1\|1708397_1708496_-	prophage protein	NA	NA	NA	NA
ARE08835.1\|1708498_1709092_-	prophage protein	D2IYV7	Enterococcus_phage	4.9e-13	27.6
ARE08836.1\|1709275_1709698_-	prophage protein	Q9AYX5	Lactococcus_phage	5.5e-75	100.0
ARE08837.1\|1709778_1709991_-	prophage protein	Q9AZN3	Lactococcus_phage	4.7e-27	92.9
ARE08838.1\|1710105_1710348_-	prophage protein	Q8LTL7	Lactococcus_phage	1.4e-27	71.2
ARE08839.1\|1710611_1710773_-	prophage protein	NA	NA	NA	NA
ARE08840.1\|1710772_1710937_-	prophage protein	Q94M83	Lactococcus_phage	9.4e-07	48.4
ARE08841.1\|1710933_1711077_-	prophage protein	A0A1P8BMD9	Lactococcus_phage	4.6e-18	97.9
ARE08842.1\|1711123_1711804_-	prophage protein	A5GYP2	Lactococcus_phage	1.7e-126	97.3
ARE08843.1\|1711800_1712040_-	prophage protein	A0A1W6JL86	Lactococcus_phage	7.5e-13	49.3
ARE08844.1\|1712029_1712605_-	prophage protein	Q9AZV1	Lactococcus_phage	4.0e-60	93.2
ARE08845.1\|1712659_1712935_-	prophage protein	A0A1P8BLI3	Lactococcus_phage	5.5e-44	92.0
ARE08846.1\|1712937_1713357_-	deoxyuridine 5-triphosphate nucleotidohydrolase	A0A1P8BMQ4	Lactococcus_phage	4.3e-72	97.1
ARE08847.1\|1713353_1713593_-	prophage protein	NA	NA	NA	NA
ARE08848.1\|1713589_1713910_-	prophage protein	V9VEU7	Lactococcus_phage	6.9e-46	83.7
ARE08849.1\|1713906_1714599_-	prophage protein	Q9AZU5	Lactococcus_phage	1.2e-42	49.8
ARE08850.1\|1714614_1714863_-	prophage protein	A0A1P8BLV4	Lactococcus_phage	2.2e-15	59.8
ARE08851.1\|1714871_1715078_-	prophage protein	Q9MC28	Lactococcus_phage	4.8e-32	100.0
ARE08852.1\|1715410_1715575_-	prophage protein	A0A1P8BKY2	Lactococcus_phage	5.5e-23	98.1
ARE08853.1\|1715583_1716474_-	primosomal protein DnaI	Q38098	Lactococcus_phage	1.0e-163	99.7
ARE08854.1\|1716483_1717290_-	replication protein	A0A1P8BL25	Lactococcus_phage	4.4e-57	98.1
ARE08855.1\|1717517_1718294_-	prophage protein	Q9AZP9	Lactococcus_phage	6.0e-144	97.7
ARE08856.1\|1718293_1719100_-	prophage protein	Q9AZQ0	Lactococcus_phage	4.3e-137	94.8
ARE08857.1\|1719199_1719454_-	prophage protein	A0A1B1IMF7	Lactococcus_phage	7.4e-35	93.8
ARE08858.1\|1719444_1719714_-	prophage protein	A0A059NT46	Lactococcus_phage	5.1e-34	96.1
ARE08859.1\|1719793_1720132_-	prophage protein	A0A1B1IMQ1	Lactococcus_phage	2.6e-59	100.0
ARE08860.1\|1720145_1720883_-	AntA/AntB antirepressor	A0A1P8BKE3	Lactococcus_phage	2.5e-139	99.2
ARE08861.1\|1720894_1721137_-	prophage protein	Q77JL3	Lactococcus_phage	2.0e-37	97.5
ARE08862.1\|1721290_1721761_+	prophage protein	NA	NA	NA	NA
ARE08863.1\|1721820_1721991_-	prophage protein	NA	NA	NA	NA
ARE08864.1\|1722245_1723058_+	Transcriptional regulator xre family	Q9AZQ8	Lactococcus_phage	2.0e-150	97.8
ARE08865.1\|1723107_1724247_+\|integrase	Phage integrase	A0A1B1IMP1	Lactococcus_phage	9.2e-210	97.9
ARE08866.1\|1724351_1725425_-	carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.5e-60	35.3
ARE08867.1\|1725487_1726420_-	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	3.7e-23	30.5
ARE08868.1\|1726603_1727896_-	Uracil permease	Q9KX94	Enterobacteria_phage	1.6e-61	35.9
1727968:1727983	attR	NA	NA	NA	NA

DBSCAN-SWA_12

1851364 : 1861223

Prochlorococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE08982.1\|1851364_1852126_-	phosphate transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-17	30.0
ARE08983.1\|1852291_1853101_-	phosphate ABC transporter ATP-binding protein PhoT family	W8CYL7	Bacillus_phage	7.0e-10	26.5
ARE08984.1\|1853134_1854028_-	phosphate ABC transporter membrane protein 2 PhoT family	NA	NA	NA	NA
ARE08985.1\|1854027_1854951_-	phosphate transport system permease protein pstD	NA	NA	NA	NA
ARE08986.1\|1855071_1855896_-	phosphate ABC transporter substrate-binding protein PhoT family	E3SNT9	Prochlorococcus_phage	1.8e-05	29.4
ARE08987.1\|1856269_1857166_-	phosphate transport substrate binding protein pstF	E3SM63	Prochlorococcus_phage	7.2e-08	32.4
ARE08988.1\|1857443_1857911_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	2.7e-43	56.6
ARE08989.1\|1857942_1858500_-	Lysophospholipase L1 related esterase	NA	NA	NA	NA
ARE08990.1\|1858604_1861223_-\|tRNA	alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	7.1e-64	33.7

DBSCAN-SWA_13

2038065 : 2124368

Lactococcus_phage(86.21%)

terminase,protease,tRNA,transposase,holin,integrase,head,tail

attL 2058145:2058204|attR 2121706:2122772

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE09159.1\|2038065_2039340_-\|tRNA	tRNA and rRNA cytosine-C5-methylase	NA	NA	NA	NA
ARE09160.1\|2039538_2040045_-	hypothetical protein	NA	NA	NA	NA
ARE09161.1\|2040065_2040254_-	hypothetical protein	NA	NA	NA	NA
ARE09162.1\|2040264_2040825_-	hypothetical protein	NA	NA	NA	NA
ARE09163.1\|2040852_2041095_-	membrane protein	NA	NA	NA	NA
ARE09164.1\|2041269_2042229_-\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
ARE09165.1\|2042225_2042690_-	Hypothetical protein	NA	NA	NA	NA
ARE09166.1\|2042655_2043177_-	NUDIX family hydrolase	NA	NA	NA	NA
ARE09167.1\|2043189_2043564_-	hypothetical protein	NA	NA	NA	NA
ARE09168.1\|2043622_2045962_-	primosome assembly protein PriA	NA	NA	NA	NA
ARE09169.1\|2046100_2046454_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
ARE09170.1\|2046633_2047251_-	guanylate kinase	NA	NA	NA	NA
ARE09171.1\|2047398_2048994_-	2,3-cyclic-nucleotide 2-phosphodiesterase	NA	NA	NA	NA
ARE09172.1\|2049224_2049938_-	6-phosphogluconolactonase	NA	NA	NA	NA
ARE09173.1\|2050213_2051413_-	S-adenosylmethionine synthetase	A0A2H4PQS6	Staphylococcus_phage	3.0e-142	66.5
ARE09174.1\|2051738_2052932_-	cyclopropane-fatty-acyl-phospholipid synthase	NA	NA	NA	NA
ARE09175.1\|2053184_2053937_+	acetyl-CoA carboxylase ligase / biotin operon repressor bifunctional protein	NA	NA	NA	NA
ARE09176.1\|2054043_2054508_-	stress-responsive transcriptional regulator	NA	NA	NA	NA
ARE09177.1\|2054536_2054740_-	hypothetical protein	NA	NA	NA	NA
ARE09178.1\|2054801_2055917_-	hypothetical protein	NA	NA	NA	NA
ARE09179.1\|2056130_2057630_-	Surface antigen	A0A0A7RUS8	Clostridium_phage	1.9e-16	33.2
2058145:2058204	attL	NA	NA	NA	NA
ARE09180.1\|2058163_2059111_-\|transposase	transposase of IS983N	H7BVY4	unidentified_phage	3.4e-32	33.0
ARE09181.1\|2059638_2060535_-	fructose-bisphosphate aldolase	NA	NA	NA	NA
ARE09182.1\|2066334_2066973_-	hypothetical protein	NA	NA	NA	NA
ARE09183.1\|2067071_2067851_-	Phage lysin	Q9AZW7	Lactococcus_phage	1.9e-126	98.1
ARE09184.1\|2067850_2068138_-\|holin	Phage holin	Q9AZL0	Lactococcus_phage	1.6e-46	98.9
ARE09185.1\|2068163_2069726_-	prophage protein	Q9AZR3	Lactococcus_phage	1.9e-237	94.0
ARE09186.1\|2069737_2069962_-	prophage protein	A0A1B1IN04	Lactococcus_phage	2.3e-32	97.3
ARE09187.1\|2069981_2072006_-	prophage protein	Q9AZR5	Lactococcus_phage	3.7e-209	54.8
ARE09188.1\|2071983_2072157_-	prophage protein	A0A1W6JLD0	Lactococcus_phage	2.6e-23	93.0
ARE09189.1\|2072156_2073278_-	prophage protein	A0A1B1IN38	Lactococcus_phage	7.5e-180	87.7
ARE09190.1\|2073293_2075081_-	prophage TAL	Q9AZR8	Lactococcus_phage	0.0e+00	93.9
ARE09191.1\|2075080_2076616_-	prophage DIT	Q9AZR9	Lactococcus_phage	7.1e-290	98.2
ARE09192.1\|2076618_2081748_-	prophage TMP	Q8LTK2	Lactococcus_phage	0.0e+00	89.3
ARE09193.1\|2081972_2082389_-\|tail	phage tail protein	Q8LTK3	Lactococcus_phage	4.6e-66	99.3
ARE09194.1\|2082533_2083127_-\|tail	prophage, major tail protein	Q9AZS2	Lactococcus_phage	3.8e-106	100.0
ARE09195.1\|2083157_2083553_-\|tail	prophage, tail component	Q8LTK5	Lactococcus_phage	2.6e-66	98.5
ARE09196.1\|2083549_2084056_-\|tail	prophage, tail component	Q9AZS4	Lactococcus_phage	1.5e-87	96.4
ARE09197.1\|2084057_2084408_-\|head,tail	prophage, head-tail joining protein	Q8LTK7	Lactococcus_phage	7.3e-57	99.1
ARE09198.1\|2084382_2084706_-	prophage protein	Q9AZS6	Lactococcus_phage	6.3e-55	100.0
ARE09199.1\|2084721_2085948_-\|head	prophage, major head protein precursor	Q9AZS7	Lactococcus_phage	4.6e-223	99.8
ARE09200.1\|2085959_2086664_-\|protease	ATP-dependent Clp protease proteolytic subunit	Q9AZS8	Lactococcus_phage	4.2e-120	100.0
ARE09201.1\|2086709_2087882_-	prophage protein	Q77P35	Lactococcus_phage	4.4e-223	99.7
ARE09202.1\|2087884_2088091_-\|head,tail	prophage, head-tail joining protein	Q9AZT0	Lactococcus_phage	8.4e-29	100.0
ARE09203.1\|2088062_2090033_-\|terminase	prophage terminase large subunit	Q9AZT1	Lactococcus_phage	0.0e+00	99.7
ARE09204.1\|2090022_2090496_-\|terminase	prophage terminase small subunit	Q9AZT2	Lactococcus_phage	5.9e-86	100.0
ARE09205.1\|2090624_2091140_-	prophage protein	Q9AZT3	Lactococcus_phage	2.3e-99	100.0
ARE09206.1\|2091141_2091363_-	prophage protein	Q9AZT4	Lactococcus_phage	9.9e-36	100.0
ARE09207.1\|2091626_2092028_-	prophage protein	Q9AZZ1	Lactococcus_phage	1.2e-68	99.2
ARE09208.1\|2092107_2092269_-	prophage protein	NA	NA	NA	NA
ARE09209.1\|2092393_2092735_-	prophage protein	M1NRW0	Streptococcus_phage	1.3e-26	54.1
ARE09210.1\|2092743_2092926_-	prophage protein	A0A1P8BKU8	Lactococcus_phage	9.7e-29	93.3
ARE09211.1\|2092922_2093162_-	DNA-binding helix-turn-helix protein	A0A1W6JL28	Lactococcus_phage	2.9e-25	71.8
ARE09212.1\|2093180_2093507_-	prophage protein	NA	NA	NA	NA
ARE09213.1\|2093572_2094265_-	prophage protein	A0A1P8BKX7	Lactococcus_phage	2.4e-128	97.4
ARE09214.1\|2094251_2094614_-	prophage protein	Q9MBV6	Lactococcus_phage	3.6e-67	98.3
ARE09215.1\|2094606_2094801_-	prophage protein	Q9MBW9	Lactococcus_phage	2.4e-33	100.0
ARE09216.1\|2094790_2095042_-	prophage protein	A0A1P8BL80	Lactococcus_phage	2.8e-26	53.5
ARE09217.1\|2095038_2095392_-	prophage protein	A0A1P8BKA8	Lactococcus_phage	8.7e-34	63.2
ARE09218.1\|2095396_2095816_-	deoxyuridine 5-triphosphate nucleotidohydrolase	Q9AZP1	Lactococcus_phage	7.4e-72	97.8
ARE09219.1\|2095812_2096475_-	prophage protein	Q9AYU5	Lactococcus_phage	1.6e-76	82.5
ARE09220.1\|2096498_2096831_-	prophage protein	Q9G0E0	Lactococcus_phage	1.5e-11	91.2
ARE09221.1\|2096839_2097046_-	prophage protein	Q9MC28	Lactococcus_phage	4.8e-32	100.0
ARE09222.1\|2097153_2097564_-	prophage protein	A5GZ50	Lactococcus_phage	1.1e-75	98.5
ARE09223.1\|2097576_2097819_-	prophage protein	A5GZ49	Lactococcus_phage	7.8e-42	100.0
ARE09224.1\|2097811_2098744_-	prophage protein	A5GZ47	Lactococcus_phage	4.8e-132	89.7
ARE09225.1\|2099007_2099934_-	Phage protein	A0A1P8BKY8	Lactococcus_phage	2.8e-156	97.4
ARE09226.1\|2099930_2100764_-	Phage protein	A0A1P8BKZ1	Lactococcus_phage	2.3e-125	94.9
ARE09227.1\|2100865_2101108_-	prophage protein	A0A1B1IMF7	Lactococcus_phage	1.6e-34	92.5
ARE09228.1\|2101120_2101243_-	prophage protein	A0A1B1ILZ0	Lactococcus_phage	5.9e-14	100.0
ARE09229.1\|2101239_2101422_-	prophage protein	A5GZ68	Lactococcus_phage	2.4e-27	100.0
ARE09230.1\|2101437_2102127_-	Phage anti-repressor protein	A5GZ67	Lactococcus_phage	2.8e-121	98.3
ARE09231.1\|2102185_2102419_-	phage repressor	A5GZ66	Lactococcus_phage	5.0e-38	100.0
ARE09232.1\|2102595_2103003_+	Transcriptional regulator xre family	A5GZ65	Lactococcus_phage	5.1e-70	100.0
ARE09233.1\|2103013_2103598_+	prophage protein	A5GZ64	Lactococcus_phage	8.6e-111	98.5
ARE09234.1\|2103653_2104193_+	prophage protein	A5GZ63	Lactococcus_phage	5.7e-93	100.0
ARE09235.1\|2104318_2105776_+\|integrase	Phage integrase	A0A1B1IM01	Lactococcus_phage	2.0e-273	99.2
ARE09236.1\|2105926_2106946_-	Competence protein ComGB	NA	NA	NA	NA
ARE09237.1\|2106893_2107820_-	Competence protein ComGA	NA	NA	NA	NA
ARE09238.1\|2107951_2112928_-	DNA polymerase III catalytic subunit PolC type	A0A0K2SUJ2	Clostridium_phage	3.2e-20	37.8
ARE09239.1\|2113040_2113577_-	hypothetical protein	NA	NA	NA	NA
ARE09240.1\|2113582_2114914_-	NAD(FAD)-dependent dehydrogenase	NA	NA	NA	NA
ARE09241.1\|2114929_2116780_-\|tRNA	prolyl-tRNA synthetase	NA	NA	NA	NA
ARE09242.1\|2116849_2118136_-\|protease	site-2 protease Metallo peptidase MEROPS family M50B	NA	NA	NA	NA
ARE09243.1\|2118154_2118958_-	CDP-diglyceride synthetase	NA	NA	NA	NA
ARE09244.1\|2118957_2119692_-	Undecaprenyl pyrophosphate synthetase	R9W0U9	Flavobacterium_phage	5.9e-16	37.0
ARE09245.1\|2120063_2120396_-	protein translocase subunit yajC	NA	NA	NA	NA
ARE09246.1\|2121206_2121686_-	hypothetical protein	NA	NA	NA	NA
ARE09247.1\|2121724_2122672_-\|transposase	transposase of IS983N	H7BVY4	unidentified_phage	3.4e-32	33.0
ARE09248.1\|2123141_2124368_+\|protease	Trypsin-like serine protease typically periplasmic with PDZ domain	A0A1B1IRD3	uncultured_Mediterranean_phage	4.9e-07	26.3
2121706:2122772	attR	NA	NA	NA	NA

DBSCAN-SWA_14

2167709 : 2181920

Lactococcus_phage(90.48%)

transposase,integrase

attL 2167531:2167551|attR 2182021:2182041

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2167531:2167551	attL	NA	NA	NA	NA
ARE09284.1\|2167709_2168657_+\|transposase	transposase of IS983N	H7BVY4	unidentified_phage	3.4e-32	33.0
ARE09285.1\|2169968_2170889_-	prophage protein	Q9AZG0	Lactococcus_phage	1.6e-172	99.7
ARE09286.1\|2170900_2171197_-	prophage protein	Q9AZG1	Lactococcus_phage	1.6e-49	100.0
ARE09287.1\|2171385_2171565_-	DNA-binding helix-turn-helix protein	Q9AZG2	Lactococcus_phage	9.2e-24	100.0
ARE09288.1\|2171756_2171987_-	prophage protein	Q9AZG3	Lactococcus_phage	1.5e-39	100.0
ARE09289.1\|2172129_2172636_-	Acetyltransferase	Q9AZG4	Lactococcus_phage	4.2e-90	100.0
ARE09290.1\|2172794_2172965_-	prophage protein	Q9AZG5	Lactococcus_phage	8.2e-06	100.0
ARE09291.1\|2173234_2174182_+\|transposase	transposase of IS983N	H7BVY4	unidentified_phage	3.4e-32	33.0
ARE09292.1\|2174269_2174632_-	prophage protein	Q9AZG6	Lactococcus_phage	3.4e-57	100.0
ARE09293.1\|2174648_2175221_-	prophage protein	Q9AZG7	Lactococcus_phage	2.1e-98	100.0
ARE09294.1\|2175382_2175589_-	prophage protein	Q9AZG9	Lactococcus_phage	1.6e-32	100.0
ARE09295.1\|2175607_2175790_-	prophage protein	Q9AZH0	Lactococcus_phage	1.4e-27	100.0
ARE09296.1\|2176158_2177856_-	prophage protein	Q9AZH2	Lactococcus_phage	7.2e-251	100.0
ARE09297.1\|2177866_2178136_-	prophage protein	Q9AZH3	Lactococcus_phage	1.3e-40	100.0
ARE09298.1\|2178132_2178285_-	prophage protein	Q9AZH4	Lactococcus_phage	1.4e-20	100.0
ARE09299.1\|2178372_2178537_-	prophage protein	Q9AZH5	Lactococcus_phage	2.1e-22	100.0
ARE09300.1\|2178538_2178709_-	prophage protein	Q9AZH6	Lactococcus_phage	4.6e-25	100.0
ARE09301.1\|2178788_2178914_-	prophage protein	Q9AZH7	Lactococcus_phage	2.1e-14	100.0
ARE09302.1\|2178947_2179463_-	prophage protein	Q9AZH8	Lactococcus_phage	4.2e-93	100.0
ARE09303.1\|2179577_2179784_-	prophage transcriptional regulator	NA	NA	NA	NA
ARE09304.1\|2179932_2180640_+	prophage protein	Q9AZH9	Lactococcus_phage	1.8e-123	100.0
ARE09305.1\|2180720_2181920_+\|integrase	Phage integrase	Q9AZI0	Lactococcus_phage	1.4e-224	100.0
2182021:2182041	attR	NA	NA	NA	NA

DBSCAN-SWA_15

2340565 : 2376368

Lactococcus_phage(85.11%)

terminase,bacteriocin,protease,capsid,transposase,holin,integrase,head,tail

attL 2358169:2358183|attR 2379050:2379064

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE09479.1\|2340565_2340796_-\|holin	phage holin	NA	NA	NA	NA
ARE09480.1\|2340788_2344826_-	hypothetical protein	A5GYS8	Lactococcus_phage	1.2e-246	42.4
ARE09481.1\|2344825_2346361_-	phage DIT	Q9AZL3	Lactococcus_phage	1.5e-101	43.3
ARE09482.1\|2346360_2350458_-	phage TMP	Q9AZL4	Lactococcus_phage	7.0e-199	89.2
ARE09483.1\|2350663_2351014_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
ARE09484.1\|2351073_2351679_-\|tail	tail protein	Q9AZL7	Lactococcus_phage	1.3e-106	97.5
ARE09485.1\|2351680_2352076_-	prophage protein	Q9AZL8	Lactococcus_phage	1.4e-67	100.0
ARE09486.1\|2352072_2352555_-	prophage protein	Q9AZL9	Lactococcus_phage	5.7e-84	99.4
ARE09487.1\|2352554_2352890_-\|head,tail	head-tail joining protein	Q9AZM0	Lactococcus_phage	5.9e-56	100.0
ARE09488.1\|2352876_2353182_-	prophage protein	Q9AZM1	Lactococcus_phage	4.4e-50	100.0
ARE09489.1\|2353192_2354506_-\|capsid	capsid protein	Q9AZM2	Lactococcus_phage	1.1e-187	90.8
ARE09490.1\|2354495_2355083_-\|head,protease	prohead protease	Q9AZM3	Lactococcus_phage	2.4e-105	98.5
ARE09491.1\|2355082_2356162_-	prophage protein	Q9AZM4	Lactococcus_phage	1.2e-198	99.7
ARE09492.1\|2356158_2356323_-	prophage protein	Q9AZM5	Lactococcus_phage	5.7e-20	96.3
ARE09493.1\|2356331_2358146_-\|terminase	terminase terL	Q9AZM6	Lactococcus_phage	0.0e+00	99.8
ARE09494.1\|2358145_2358538_-\|terminase	terminase terS	Q9AZM7	Lactococcus_phage	6.8e-19	38.9
2358169:2358183	attL	NA	NA	NA	NA
ARE09495.1\|2358734_2359238_-	prophage protein	Q9AZM8	Lactococcus_phage	1.2e-92	99.4
ARE09496.1\|2359521_2359944_-	prophage protein	Q9AZ68	Lactococcus_phage	5.0e-52	100.0
ARE09497.1\|2360024_2360237_-	prophage protein	Q9AZN3	Lactococcus_phage	1.1e-28	97.1
ARE09498.1\|2360208_2360529_-	prophage protein	Q9AZZ2	Lactococcus_phage	5.5e-43	91.7
ARE09499.1\|2360820_2361183_-\|transposase	transposase helper protein for IS712H	A0A059NT77	Lactococcus_phage	5.6e-60	100.0
ARE09500.1\|2361548_2362337_+	peptide transporter	Q7M293	Enterobacteria_phage	5.2e-10	27.3
ARE09501.1\|2362471_2362945_+\|transposase	transposase for insertion sequence element IS712H	A0A059NT83	Lactococcus_phage	5.8e-41	100.0
ARE09502.1\|2362953_2363109_-	prophage protein	Q94M83	Lactococcus_phage	3.7e-05	45.8
ARE09503.1\|2363114_2363258_-	prophage protein	A0A1P8BMD9	Lactococcus_phage	4.6e-18	97.9
ARE09504.1\|2363304_2363985_-	prophage protein	A0A1P8BK99	Lactococcus_phage	1.0e-126	97.3
ARE09505.1\|2363971_2364220_-	prophage protein	A0A1W6JL86	Lactococcus_phage	3.9e-12	48.0
ARE09506.1\|2364209_2364470_-	prophage protein	Q77MW5	Lactococcus_phage	4.2e-17	91.3
ARE09507.1\|2364466_2364790_-	prophage protein	A0A0D3MSP5	Lactococcus_phage	3.6e-42	73.4
ARE09508.1\|2364786_2365320_-	prophage protein	A0A1B1IMR1	Lactococcus_phage	1.8e-38	50.8
ARE09509.1\|2365312_2365465_-	Phage protein	A5GYU1	Lactococcus_phage	2.8e-21	96.0
ARE09510.1\|2365457_2365664_-	prophage protein	Q9MC26	Lactococcus_phage	3.4e-30	98.5
ARE09511.1\|2365660_2365867_-	prophage protein	NA	NA	NA	NA
ARE09512.1\|2365875_2366082_-	prophage protein	Q9MC28	Lactococcus_phage	4.8e-32	100.0
ARE09513.1\|2366455_2367748_-	prophage protein	X2KU14	Streptococcus_phage	1.7e-127	51.4
ARE09514.1\|2367772_2368564_-	prophage protein	A0A1S5SCM4	Streptococcus_phage	1.6e-91	63.8
ARE09515.1\|2368581_2369100_-	prophage protein	B3GVY6	Streptococcus_phage	3.3e-53	58.7
ARE09516.1\|2369111_2369831_-	prophage protein	B3GVY5	Streptococcus_phage	5.1e-81	62.3
ARE09517.1\|2369842_2371024_-	prophage protein	A0A126GGP4	Streptococcus_phage	9.1e-160	68.2
ARE09518.1\|2371007_2371463_-	phage protein	A0A1S5SAX0	Streptococcus_phage	3.9e-50	63.8
ARE09519.1\|2371443_2371797_-	prophage protein	NA	NA	NA	NA
ARE09520.1\|2371807_2372326_-	prophage protein	Q9XJE3	Lactococcus_phage	6.3e-89	100.0
ARE09521.1\|2372394_2372565_-	prophage protein	A0A1P8BMC4	Lactococcus_phage	3.5e-25	100.0
ARE09522.1\|2372564_2372735_-	prophage protein	Q9T1Y5	Lactococcus_phage	6.7e-24	100.0
ARE09523.1\|2372731_2372962_-	prophage protein	A0A1P8BME4	Lactococcus_phage	5.9e-39	98.7
ARE09524.1\|2372974_2373193_-	prophage protein	A0A1P8BMT4	Lactococcus_phage	1.7e-32	100.0
ARE09525.1\|2373489_2373834_+	Transcriptional regulator xre family	A0A1P8BMR9	Lactococcus_phage	5.3e-60	100.0
ARE09526.1\|2373846_2374410_+	prophage protein	A0A1P8BMG8	Lactococcus_phage	1.5e-104	100.0
ARE09527.1\|2374421_2374622_+	prophage protein	A0A1P8BMQ1	Lactococcus_phage	6.9e-28	93.9
ARE09528.1\|2374680_2375172_+	prophage protein	A0A1B1IMF9	Lactococcus_phage	1.3e-48	98.2
ARE09529.1\|2375195_2376368_+\|integrase	Phage integrase	Q9T1Z2	Lactococcus_phage	1.9e-194	96.6
2379050:2379064	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP016714

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

39784 : 45263

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ARE07098.1\|39784_40534_-	Nicotinamide mononucleotide transporter	A0A2K9VCL6	Lactobacillus_phage	3.6e-53	45.6
ARE07099.1\|40966_41647_+	Transposase	A0A1X9I6C6	Streptococcus_phage	6.5e-110	83.6
ARE07100.1\|41751_42120_-	transcriptional regulator ArsR family	E4ZFI8	Streptococcus_phage	2.4e-10	33.0
ARE07101.1\|42101_42374_-	putative permease cadmium resistance protein	NA	NA	NA	NA
ARE07102.1\|42524_42722_-	hypothetical protein	NA	NA	NA	NA
ARE07103.1\|43363_44323_-	hypothetical protein	W5R8L2	Staphylococcus_phage	7.9e-37	36.4
ARE07104.1\|44538_44961_+	cupin	Q2I8C5	Bacillus_phage	3.1e-38	61.0
ARE07105.1\|45056_45263_-	Transposase	A0A1X9I6C6	Streptococcus_phage	2.3e-26	83.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP015906

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP016714

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection