CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028899	Stenotrophomonas maltophilia strain AB550 chromosome, complete genome	8 crisprs	cas3,PD-DExK,DEDDh,csa3,WYL,RT,Cas9_archaeal,DinG	0	0	8	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP028899_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028899_1

242391-242481

Orphan

Consensus_repeat	Method
GGTGGGTGCCAACCTTGGTTGGCACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028899_1

>merge|CP028899|1|242391-242481|CRISPRCasFinder
GGTGGGTGCCAACCTTGGTTGGCACATCTTTCCAGAAGTTTCTGCAGCCGCCTTGATCTGTCTTTGGTAGGTGCCAACCTTGGTTGGCACA

>CP028899|1|1|242391-242481|CRISPRCasFinder
GGTGGGTGCCAACCTTGGTTGGCACA	TCTTTCCAGAAGTTTCTGCAGCCGCCTTGATCTGTCTTT
GGTAGGTGCCAACCTTGGTTGGCACA

Protein	Signature genes	Signature genes Name	Protein_function
CP028899.1\|AWB76631.1\|238814_239216_-\|cytochrome-C	unknown	unknown	gnl\|CDD\|226005
CP028899.1\|AWB76636.1\|244023_246873_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
CP028899.1\|AWB76634.1\|242581_243061_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
CP028899.1\|AWB76626.1\|226906_229096_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
CP028899.1\|AWB76642.1\|251857_252850_+\|3-beta-hydroxysteroid-dehydrogenase	unknown	unknown	gnl\|CDD\|187552
CP028899.1\|AWB76630.1\|235221_238821_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|274362
CP028899.1\|AWB76627.1\|229360_230485_-\|aminoglycoside-phosphotransferase	unknown	unknown	gnl\|CDD\|270702
CP028899.1\|AWB76628.1\|230606_231014_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|182532
CP028899.1\|AWB76629.1\|233362_234133_-\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB76641.1\|250202_251861_+\|peptide-synthase	unknown	unknown	gnl\|CDD\|236443
CP028899.1\|AWB76639.1\|248664_249555_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|179147
CP028899.1\|AWB80627.1\|231261_233250_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659
CP028899.1\|AWB76640.1\|249666_250098_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
CP028899.1\|AWB76632.1\|239281_240958_-\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
CP028899.1\|AWB76643.1\|252931_253087_+\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
CP028899.1\|AWB76638.1\|247507_248524_+\|3-oxoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|181732
CP028899.1\|AWB76637.1\|247086_247404_+\|DUF4156-domain-containing-protein	unknown	unknown	gnl\|CDD\|372679
CP028899.1\|AWB76633.1\|241215_242379_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173840
CP028899.1\|AWB80626.1\|226328_226898_-\|nicotinamide-riboside-transporter-PnuC	unknown	unknown	gnl\|CDD\|377432
CP028899.1\|AWB76635.1\|243130_243607_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP028899.1\|AWB76631.1\|238814_239216_-\|cytochrome-C	gnl\|CDD\|226005	COG3474, COG3474, Cytochrome c2 [Energy production and conversion].	5.39439e-34
CP028899.1\|AWB76634.1\|242581_243061_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.61543e-86
CP028899.1\|AWB76626.1\|226906_229096_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	2.06784e-102
CP028899.1\|AWB76642.1\|251857_252850_+\|3-beta-hydroxysteroid-dehydrogenase	gnl\|CDD\|187552	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs. Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.01037e-84
CP028899.1\|AWB76630.1\|235221_238821_+\|histidine-kinase	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	5.87277e-89
CP028899.1\|AWB76627.1\|229360_230485_-\|aminoglycoside-phosphotransferase	gnl\|CDD\|270702	cd05153, HomoserineK_II, Type II Homoserine Kinase. This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a Protein Kinase fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine. The Type II homoserine kinase subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	1.00336e-24
CP028899.1\|AWB76628.1\|230606_231014_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|182532	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB.	1.64827e-07
CP028899.1\|AWB76633.1\|241215_242379_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	0
CP028899.1\|AWB76641.1\|250202_251861_+\|peptide-synthase	gnl\|CDD\|236443	PRK09274, PRK09274, peptide synthase; Provisional.	0
CP028899.1\|AWB76639.1\|248664_249555_+\|alpha/beta-hydrolase	gnl\|CDD\|179147	PRK00870, PRK00870, haloalkane dehalogenase; Provisional.	1.03749e-43
CP028899.1\|AWB80627.1\|231261_233250_-\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	5.6945e-14
CP028899.1\|AWB76632.1\|239281_240958_-\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	4.1416e-95
CP028899.1\|AWB76643.1\|252931_253087_+\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	0.00162013
CP028899.1\|AWB76638.1\|247507_248524_+\|3-oxoacyl-ACP-synthase-III	gnl\|CDD\|181732	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed.	0
CP028899.1\|AWB76637.1\|247086_247404_+\|DUF4156-domain-containing-protein	gnl\|CDD\|372679	pfam13698, DUF4156, Domain of unknown function (DUF4156). The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.	1.5656e-09
CP028899.1\|AWB76636.1\|244023_246873_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.9218e-74
CP028899.1\|AWB80626.1\|226328_226898_-\|nicotinamide-riboside-transporter-PnuC	gnl\|CDD\|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	1.94483e-47
CP028899.1\|AWB76640.1\|249666_250098_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	2.14508e-15

>CP028899.1|AWB76633.1|241215_242379_+|acyl-CoA-dehydrogenase
MALHPYDLFDVRSLLNEEERAVQESVARFTNERVLPIIGDAFDQARFPSELVPEIASLGLLGATLPAEYGGGDLGAVSYGLICQELERGDSGLRSFVSVQSSLCMYPIYAYGSEEQRQQWLPAMARGELIGCFGLTEAHGGSDPASMKTRAVRDGSDWRISGSKMWITSGPVADLAIVWAQTEDGIQGFVLEKGMAGFTTQEIKHKMSLRASLTGALFFDDVRVPDSHRLPNVKGLKGPLGCLTQARYGISWGPIGAAVACLDEALGYSKERVLFGRPLAATQSAQIKLAEMARRITTAQLLALQLGRLKEAGQLQPQQVSLAKWNNCRMAIDIARECRDLLGGAGITTEHVAIRHALNLESVITYEGTETVHQLVIGRELTGINAF
>CP028899.1|AWB76632.1|239281_240958_-|electron-transfer-flavoprotein-ubiquinone-oxidoreductase
MSAEANALPPREVMEFDVVIVGAGPAGLATAIRLRQRAIEAGRELSVCVLEKGSEPGAHVLSGAVMDPRALTELFPDWAERGAPLKQKVTRDEFLFLSETGARSTPNALLPECFHNEGNYIISLGEVTRWLAQQAEALEVAIFPGFAAAEVLYGDNGEVIGVATGDMGIEKDGSIGPAFERGMALQAKYTIFAEGARGHLGRQLIARYTLDEGKDPQAYGIGIKELWQIDPSRHEPGLVVHAAGWPLDSDTYGGAFLYHADGGKVAIGYVVGLDYRNPWLSPFEEFQRFKTHPSIRKHLEGGTRIGYGARAITAGGLLSLPKTVFPGGALVGCEAGYLNASRIKGSHAAIKTGMLCADAAFDALAADRQHDELSSYPKAFEASWLFTELQQAKNFKQWFKKGQTVATLMTGVEQWLLPKLGVRNPPWTLHRTQPDHACLEPAAKHTRIAYPKPDGVLTFDRLSSVFLSSTNHDENQPSHLTLKDPSIPVKVNLAEYAGPEARYCPAGVYEFVGEADNARLQINAQNCVHCKTCDIKDPTQNIVWVTPQGGGGPNYSGM
>CP028899.1|AWB76631.1|238814_239216_-|cytochrome-C
MRACRLLTAVAVALLATACQRPPAVPATPEQARQQAMQRAFELCAGCHTVQPGGIHRFGPNLHGVIGRRAGSLPDYGYSDGMRRADITWTAQTLDTFLQSPTHLVPGTRMYNAFPSAERRALVIAYLQQQSAQ
>CP028899.1|AWB76630.1|235221_238821_+|histidine-kinase
MRRWAVRGLLLLLAVLALPVAQAQPAPGLLPLSPLQREYLVAHPTIVVGQYDSGWPPFESLRDGQQVGLGPDYLSHLARQLGMKVEARRYPDWTSVLDAACRGEIDVVMNVGLSADRTRCMVYTAAYSEAPLALVGRPDDLRASDMPDLEGLRVVIEQDFLTGPQVRARFPRARQLVVNDTLSALQMVRDDKADVYIGNAFVATELIASRRLQGVALLRPSDLPPERLHFGIPNSKQPLAEALDLALAATSQAQRDALAQRWLPPPHWSASAQLALSQAEKRVLEQPLKIGFAPNAAPLSFTGEDGRPSGLASEYLQRLMQAGANLQVEDSHDWYEVREKARRGELQAVMGIPVDSRYLGPDWVFSQPFISVPNVIVVRSDGESLLGLADLQGKRVLLSDPERVRGYVLQQAPQARIIAARSAEQSLQRLLAGDADAYIGNLAVVDHLLRSRFPGRLQVAAPAGFNDQLVLAVDRRHAALATTFDRLLLQMTPRKREALRNAWLGVEYRNGVDWNKVLRWGVPVLLVLLTALLVHGVGHWRLRREVAGRRQLEQRLAEVTDNLPAVVYQARRDADGALSFPFIAGDLPALFGITRQQAEQDARVLLERIEEEDRAHILHSIEQAARQFAPLILEFRLRSDGEGVRWVRSQAHPYAAEEGAVIWSGYWVDVSEARMQADALAAAKADAEQAAEAKSRFLATMSHEIRTPMSGVLGMLEVLAHSPLDSEQQRILGVIEDSAQMLRQILDDILDYSRLEAGALRLEPVPQPLRPLLESVCRLLSAQASARGLALHVQIDPELAPAHEVDGVRLRQIVFNLLSNAIKFTAQGEVRLQLEVLGPTSEDGVQPLCLSVTDTGIGIAPEQLQHLFAPFTQAGAYIQRDHGGTGLGLSICQRLVQMMQGELTLHSTLGEGTRAEVRVSLVEAGSEDAAALLAEQDQTALLPAALRQARVLVIEDHPTNQAMMAWRLQQLGVPHVLLGDGQQALDRLSSESFDLVITDCRMPVLDGFGFTRLLREREGRTGQPRLTVLALTASVLDDDARRCREAGMDEVLAKPLSLATLRAALLRWLPQAQGQSFEVPMPEVAADDGEALPDLATLQQRFGSRVVAEQLRDSLLQASEGDLAAVQRAVQAGDRQAAALHLHRQAGGLGAIGATALAQQANALVERLQDAAEADTAPLFATVTTFVARLQQQLQRLAH
>CP028899.1|AWB76629.1|233362_234133_-|hypothetical-protein
MQNPSPDAAVTPPDAPTVMYFIYQVDGDGATSYEVQNGSVATFWFGHRFTLDGTTYYTGFSWDTREHYGKPGEQQPAGPDDRANLAEATFVLASGDAKKPWKFRGQEWTIGALGAYDKADDVDTRRKPIEHRTADGRLLLAVPTSSFDRGISSSGYALLLFNPKRSEDDLDSKVWRYVGSVRTGEDNSAACDDGNVMPCTDSDGELAFVADGNGLPQLTVTFKGTTIEAPGKTRALGAGDTVHYRFDSKAQQYIAP
>CP028899.1|AWB80627.1|231261_233250_-|peptidoglycan-binding-protein
MAQHDYSKKEVLDIVEQVARQKGIPVDDFMRFAHIETGGTFNERAHNTSTGAKGLFQFVPGSARQYHLTGHEFDPTRNTEAAAQMYQDNLGSMARRNERTGHPYLSGGDTPTGLDLYLAHQQGSAGYGSVQTAIATGTFGVVRNGHGEEINMRRNVLNQIGSDAKALTGHTLAEMRGMNDGDLARTFSSYYIHKYAAISIPEKHITPQTVAPGQAQAPATPAQTAAVGAAAATLAATATAPAAPKPGIELHAAYDAGVKYDDVKYAINIPGHALYVPGKTGKNVDQGYIDCSGWVGTLQNRTMDEINQKAGHAVFSKADRIDLGNLGSGGIVHKAVEQSGVLLERDAILKPGALKEGMVIGLDTARTRHEHWNGIDHIVMVVRDPNTDKLLISQSTGSKGVHTMPVEDYLKQVKDHPHWKLFASDPLSKARDLLESRTQSHEQTQGKPAAEHKAAAAPHAELYKPGAHSEGVRKVQEQLGHLGYAGADGKPLAEDGRFGRNTEAAVRQLQKDNGLVADGIVGAKTLDAIKEARERPLLNDERHPRHPMYLQATEGLERMPAGTFKDRHALESAAAALTREAHAAGLQRIDAVVPSPNGERLFAVQGTVGDPAASRVAVETRTASEQSMALSSGAVQGAPNVLHQQQDAQQEQTRQAQKAMGV
>CP028899.1|AWB76628.1|230606_231014_-|glycine-zipper-2TM-domain-containing-protein
MLSTSTLSFRGLAMALALVAGVAVVSDASAMSRKDKRTLVGAVVGGVAGNLLSNGDPAATVGGAVAGGAIGNLTTSDRRDRRYYDNRRYDDRYDRRYDRGYYRSGYYDRGDDRRWQRERYYDNRYYHDRGRHRGW
>CP028899.1|AWB76627.1|229360_230485_-|aminoglycoside-phosphotransferase
MTSSSHRVQGLNNDEVAADWPPISAADIAWLSTRYPQLGGHSQPRWHSPRPLSAAAIVDDTRGAVFIKRHHHSVRSAACLEEEHHFIAHLAAAGVPVVQVLPATDGHTAVEHGEWTFELHDVGVGDDLYRDAVSWSLLTDVAQAREAGRTLAQLHRAAASYHAPQRSTHLLVARDDLIRADDPIAAIKAGLDERPGLARYLARIPWEAQLQRDVLPWHAGLAERLRAEPRLWAHNDWHVSNLLWRNGEVSTVLDFGLASPTSALFDLATAIERNAVAWLELERGMEAVRIDIALALLDGYREVLPLSAARVHLLADLLPMVHFDFALSEVEYFEGVTRSTANADVAWQPFMLGHPAWFHSAPGRALLQALHAVA
>CP028899.1|AWB76626.1|226906_229096_-|TonB-dependent-siderophore-receptor
MNRCLRPTLLSLALCAALPLHASEAEATTDAAATGAERSPTELAAVRVEAGKPKADTSRVNAFGGGSWKDTPASVNVLERDYLERRQVRSLSELASNDASLGDAYAPVGYYQNIAIRGFALDAATGYRFNGLSIAGEQRLALENVQSVEILKGEAGLAAGVMAPGGIINYIGKRPAEVRTATLGTDSEGSRYVAVDVGHWITPRFGLRLNAAWDSSNSYVAHADGRRNFYSLAADWLIGERGKLEVDANYQTSSQRSVSGYQLLGARELPRGVDREHLLGYQPWQRPVDIASTNITALHTYDFNDAWQSRVSVGHSRSVIDDNVAFAYGCYYAVQCADGSVPGNYFAPNGDYDVYDYRSPDDTRRNQQARAELRGRFETGSVGHQLTVGADYFRRTVERRPSVNEYVGTSNIHDPQVPVFEPSPKMPGPSARRLDSRQTAFFALDRMSFGDDWQWLAGGRFVRLDERAYDKRGVPQRHSRLSRFLPQTAVVWKATDQLNAYASYVRGISLGQEAPFWTSNADTFLPSVQSRQLEAGVKYVPVEALTLGAAVFRISQPYQYARPDSSDVGYTFVEEGTQTHTGLELTANGQLTDALQIVASASVLQARARDTGTPAYEGHQLVNVPKVRASVHVAYALPFVQGLDVTGGWRYAGANVARADGGVRAPDYSVFDAGLRFQHRLHERAVTWNLSVDNVFNRFYWRDTGSSGGDYYLFPGAPRQARLSVTFAL
>CP028899.1|AWB80626.1|226328_226898_-|nicotinamide-riboside-transporter-PnuC
MLEWTAALCSILGVWLMARRRLAAWPVGLLSVALYGLVFAEAKLYSDTLLQVAFGGFLVYGWLNWRQHAADEGSIRIVPLARDTLLRDLAFGLCGGVALGAAMHTFTDAALPWLDAMLTALSLVGQWWQARRHVACWWVWIAVDVVYVGAYLFKSLHVTAALYVFFLGLAVFGLRAWSAAAREPQVATR
>CP028899.1|AWB76634.1|242581_243061_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MNAAPPFHVILFQPEIPPNTGNVIRLCANTGAQLHLVEPLGFALEDKQLKRAGLDYHEYSRLQVHPDLDTALARIAPKRLFALSTRASVRYDSVAFEDGDAFLFGPESRGLPQDVLDALPDGRRLRLPMQPDNRSLNLSNTVAVVMYEAWRQHGFAGGA
>CP028899.1|AWB76635.1|243130_243607_-|hypothetical-protein
MNAKTIAIAIALIAGTAVVSSVQASESIKTLATVQVRPAADQLAQQAWEQASGIPTLATVEVRPSADQLAERSGYVAAPVAAAMPITTLASVEVRPSLEQRVALAAELEAQRYAATLAAAATSVANQVIVNLPALQVRPSAADLQALATETAQVLLRP
>CP028899.1|AWB76636.1|244023_246873_+|insulinase-family-protein
MSLALRPRAALLAVALSTALGTLAPTSALAARPTAPAKVDIPYEQFTLPNGLRVIVHTDRKAPIVAVNVWYHVGSKDEPAGRTGFAHLFEHLMFQGSENHDGEFFEPFKQVGATGQNGTTNTDRTNYFENVPTTALDMALWMESDRMGHLVGAIDQAALDEQRGVVQNEKRQGENQPYGQAWDQINKALYPVGHPYHHGVIGSMNDLNAASLDDVKTWFRTWYGPNNAVLVLAGDIDLATAKEKVARYFGSIPAGPTMAQPAVNVAKRSADTRETMTDKVPQARIYRAWNVPQVGTADIDQLQLFSEVLGGAKSSRLSQRLQHQDKLVDSIGSGLSTSQLGSNFVIVATVKQGQDPAKVEKIIDEELDRLIKQGPTAAELERAKTGARAGFIRGIERIGGFGGKADALAECAVFTGDPGCFRTSLANIEKASAADLSRLGAQWLDKGSHTLVIAPGERVALKEEPSQTPKPFTVPAVDPKYSTLPEQVDRKAGVPQTREFPQLKFPALQRATLKNGTQVILAERHEIPVVQFSYQFPGGFSADQGRKPGTANFTMSLMTEGAGKLGSLAFADAADALGASLDASAGLDSMSVDLSALKENLAPSLALYRDLLREPRFEQGEIDRVKATWIAGIQQEKVNPGAVAMRVLPPLLYGKGHPYAIPFTGSGDEAAINGLTREDLVDFHHDWLRPQNGTLIVVGDTTLAEIVPLLDKQLGDWKATGEAPQVKAATDVALPKGPRVFLIDQPGAVQANLFAGQVVAPSSAASSTRFDIANGVIGGDFTSRLNMNLREDKHWSYGARSSATSSVGQRPWMASAPVQIDKTGPALAEMRKEIAAFADGSKPATAAEVNRIRNIQTLSLPGAYETASAVAATIGSIVQFKRPDDYVLRRKAEIEAMTPAQVQQAAAEIKPQALTWVVVGDLKQTEAAVRALNLGEVTVIDAEGNPVKK
>CP028899.1|AWB76637.1|247086_247404_+|DUF4156-domain-containing-protein
MRVLLLSSLLLTVTACTWVPIEPAGKATRVLPAGPVPAGCIAKGEVVVTVKSKVGFYNRNPLRVQEELETLARNEAPSAGANAVQAAAAPADGSQRFAAFQCPPR
>CP028899.1|AWB76638.1|247507_248524_+|3-oxoacyl-ACP-synthase-III
MLFKNVSIAGLAHVDAPHTLTTKEINERLQPTLDRLGIRTDVLGDIAGIHARRLWDNGVLASDAATMAGRKALEDAGIDATQVGLLVNTSVSRDYLEPSTASIVSGNLGVSDECMTFDVANACLAFINGMDIAARMIERGDIDYALVVDGETANLVYEKTLERMTAPDVTADDFRNELAALTTGSGAAAMVMARSELVPDAPRYKGGVTRSATEWNQLCLGNLDRMVTDTRLLLIEGIKLAQKTFTAAKIALGWAVEELDQFVIHQVSQPHTAAFIKNFGIDPKKVMTIFGEHGNIGPASVPIVLSKLKQLGKLKKGDRIALLGIGSGLNCSMAEVVW
>CP028899.1|AWB76639.1|248664_249555_+|alpha/beta-hydrolase
MRDLPGYPAHPQRFEVRPGLSMNYLDEGPRDGEVVVMVHGNPSWSYYWRTLVAGLSDTYRCIVPDHIGMGLSDKPDDSRYEYTLQSRVDDLDALLKHLGITGPVTLAVHDWGGMIGFGWALSHHDQVKRLVVLNTAAFPMPAAKTMPWQIALGRHWKIGEWIIRSFNAFSSGASWLGVERKMPADVRRAYVSPYNSWANRISTIRFMQDIPLSPADKAWSLLERAGKALPSFADRPAFLGWGLRDFVFDHHFLKGFQAALPQAQVHAFEDAGHYVLEDKHEVLVPEIRAFLDANPI
>CP028899.1|AWB76640.1|249666_250098_-|YkgJ-family-cysteine-cluster-protein
MQHPCMTCGACCTQYRVAFHWMESDEVTPGGVPHQLTEVLDPHRLCMRGTHSKPVRCVALDAQIGVYSRCTIHPNRPSVCREVDASWEYGKASPQCDKARIAYGLDPLTLADWRWRDDADNDDDHPDDNGNSPSSPPQAPVAA
>CP028899.1|AWB76641.1|250202_251861_+|peptide-synthase
MNRPCNIAARLPELARERPDQIAIRCPGRRGAGNGMAAYDVTLDYRQLDARSDAMAAGLAGYGIGRGARTVVMVRPSPEFFLLMFALFKLGAVPVLVDPGIDKRALKQCLDEAQPQAFIGIPLAHVARLALRWAPSATRLVTVGRRLGWGGTSLAALERAGAKGGAMLADTDGEDMAAILFTSGSTGVPKGVVYRHRHFVGQIQLLGSAFGMEAGGVDLPTFPPFALFDPALGLTSVIPDMDPTRPAQADPARLHDAIQRFGVTQLFGSPALMRVLARHGRPLPTVTRVTSAGAPVPPDVVATIRSLLPADAQFWTPYGATECLPVAVVEGRELERTRAATEAGAGTCVGSVVAPNEVRIIAIDDAPLADWSQARVLATGEVGEITVAGPTATDSYFNRPQATAAAKIRETLADGSARIVHRMGDVGYFDAQGRLWFCGRKTHRVETAQGPLYTEQVEPVFNTVPGVARTALVGVGPAGAQVPVLCVELQRGQSDSPALQEALRAHAAARTPEAGLRHFLMHPAFPVDIRHNAKIGREKLAVWASAELEKRA
>CP028899.1|AWB76642.1|251857_252850_+|3-beta-hydroxysteroid-dehydrogenase
MKILVTGGGGFLGQALCRGLVERGHQVLAFNRSHYPELQAMGVGQIRGDLADAQAVLHAVAGVDAVFHNGAKAGAWGSYDSYHQANVVGTDNVIAACRAHGINRLVYTSTPSVTHRATHPVEGLGADEVPYGEDFQAPYAATKAIAEQRVLAANDVSLATVALRPRLIWGPGDQQLVPRLAERARQGRLRLVGDGNNKVDTTYIDNAALAHFLAFEALAPGAACAGKAYFISNGEPLPMRELVNQLLAAVGAPTVDKAISFKTAYRIGAVCERLWPLLRLRGEPPLTRFLAEQLCTPHWYSMEPARRDFGYVPQVSIEEGLRRLKASSAA
>CP028899.1|AWB76643.1|252931_253087_+|DUF1328-domain-containing-protein
MLHYAIIFFVIAIIAAVLGFSGIAGAATNIAWILFVVFLILAVISMFRKRG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028899_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028899_2

713662-713747

Orphan

Consensus_repeat	Method
GTGCCGGCCGCTGGCCGGCATCGTGCCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028899_2

>merge|CP028899|2|713662-713747|CRISPRCasFinder
GTGCCGGCCGCTGGCCGGCATCGTGCCCCGGGTGGCAGGTGAATCACCATCCGGTAGTGCCGGCCGCTGGCCGGCATCGCGCCCCG

>CP028899|2|2|713662-713747|CRISPRCasFinder
GTGCCGGCCGCTGGCCGGCATCGTGCCCCG	GGTGGCAGGTGAATCACCATCCGGTA
GTGCCGGCCGCTGGCCGGCATCGCGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
CP028899.1\|AWB77016.1\|699564_700293_+\|molecular-chaperone	unknown	unknown	gnl\|CDD\|225663
CP028899.1\|AWB77022.1\|709776_712611_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372547
CP028899.1\|AWB77031.1\|720803_721889_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|182729
CP028899.1\|AWB77019.1\|704244_705420_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
CP028899.1\|AWB77014.1\|698115_698481_-\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB77018.1\|702940_703978_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
CP028899.1\|AWB77025.1\|715157_716822_-\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
CP028899.1\|AWB77021.1\|707632_709780_+\|glycosyl-transferase-family-protein	unknown	unknown	gnl\|CDD\|237974
CP028899.1\|AWB77032.1\|721924_722353_-\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB77027.1\|717734_718988_+\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
CP028899.1\|AWB77017.1\|700385_702950_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
CP028899.1\|AWB77023.1\|712604_713570_-\|DUF4434-domain-containing-protein	unknown	unknown	gnl\|CDD\|373094
CP028899.1\|AWB77024.1\|713748_715065_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
CP028899.1\|AWB77028.1\|719112_719532_+\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB77030.1\|720161_720683_+\|transcriptional-regulator-NrdR	unknown	unknown	gnl\|CDD\|234774
CP028899.1\|AWB77026.1\|717076_717547_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378715
CP028899.1\|AWB77033.1\|722448_723333_-\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB77015.1\|698939_699479_+\|ferrous-iron-transporter-B	unknown	unknown	gnl\|CDD\|226069
CP028899.1\|AWB77029.1\|719559_720009_+\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB77020.1\|705424_707626_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377001

Protein	Function_ID	Function_description	E-value
CP028899.1\|AWB77016.1\|699564_700293_+\|molecular-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	1.38631e-82
CP028899.1\|AWB77022.1\|709776_712611_+\|hypothetical-protein	gnl\|CDD\|372547	pfam13283, NfrA_C, Bacteriophage N adsorption protein A C-term. The function of this domain is unknown but it is found at the C-terminus of bacteriophage N4 adsorption protein A, in association with an N-terminal region of TPR repeats.	8.08812e-24
CP028899.1\|AWB77031.1\|720803_721889_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|182729	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD.	2.14567e-135
CP028899.1\|AWB77019.1\|704244_705420_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	1.21777e-151
CP028899.1\|AWB77015.1\|698939_699479_+\|ferrous-iron-transporter-B	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	7.56133e-23
CP028899.1\|AWB77018.1\|702940_703978_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.60125e-20
CP028899.1\|AWB77025.1\|715157_716822_-\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
CP028899.1\|AWB77021.1\|707632_709780_+\|glycosyl-transferase-family-protein	gnl\|CDD\|237974	PRK15489, nfrB, glycosyl transferase family protein.	0
CP028899.1\|AWB77027.1\|717734_718988_+\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
CP028899.1\|AWB77017.1\|700385_702950_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
CP028899.1\|AWB77023.1\|712604_713570_-\|DUF4434-domain-containing-protein	gnl\|CDD\|373094	pfam14488, DUF4434, Domain of unknown function (DUF4434).	1.45473e-22
CP028899.1\|AWB77024.1\|713748_715065_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	1.94734e-168
CP028899.1\|AWB77030.1\|720161_720683_+\|transcriptional-regulator-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	3.42163e-86
CP028899.1\|AWB77026.1\|717076_717547_+\|hypothetical-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	6.75147e-11
CP028899.1\|AWB77020.1\|705424_707626_+\|hypothetical-protein	gnl\|CDD\|377001	pfam03170, BcsB, Bacterial cellulose synthase subunit. This family includes bacterial proteins involved in cellulose synthesis. Cellulose synthesis has been identified in several bacteria. In Agrobacterium tumefaciens, for instance, cellulose has a pathogenic role: it allows the bacteria to bind tightly to their host plant cells. While several enzymatic steps are involved in cellulose synthesis, potentially the only step unique to this pathway is that catalyzed by cellulose synthase. This enzyme is a multi subunit complex. This family encodes a subunit that is thought to bind the positive effector cyclic di-GMP. This subunit is found in several different bacterial cellulose synthase enzymes. The first recognized sequence for this subunit is BcsB. In the AcsII cellulose synthase, this subunit and the subunit corresponding to BcsA are found in the same protein. Indeed, this alignment only includes the C-terminal half of the AcsAII synthase, which corresponds to BcsB.	0.00424683

>CP028899.1|AWB77023.1|712604_713570_-|DUF4434-domain-containing-protein
MRRRLLRAAVLAPLAATLATLPGCSLPVQVDGTFLQPWRSHLQWGPADWQRSLKLAHALGCRQLVLQWTGIVGGSDGDWSLPDSNLQQLFTAASENDIRIRVGLPFQQRWWQAIGADDATLQAFLADSLAHARSWLAQAPWAQQPAFGGWYLPYELEQFHWADPARQQWLAQWLHGLAQAASARGGDCAISCYFSRLQTDGDLVALWQAVLARAALRPMVQDGVGVAGAGNVQQLQPLLGHFRAQGIGFDAIVELFRELPGSPADGSAFKGETADAARIQRQLAWAHDSGAQHVLVYALEPWLTQDTPQAAALRRRWGLPQ
>CP028899.1|AWB77022.1|709776_712611_+|hypothetical-protein
MKTTLLSSVIAVALATAAAPVLAQADAALPLSGAAYRVAEQAFAAYERGDYPAAYRQSTEAIRLRPDVVRLRLLQIYALQKLGRGAEAQQQARRALDAGLKDPALPALAAATAARSTPPDARSGRAPSPPRVAGSGADRARQQAYALATDAYAAYDAGRMGEAASKAEQAFRQQPTQGAWAMLWVAALEAQQQPEQADAAIATALQLGAPNVEALRARRVALDRQRALVQAQQAYRSLSTQGDAAAVAQARAAVELAPEVATYRLLLITAQLQQGQLADAERSADQALQADGQDLNARVMRGYLRQRQGNSLLANEDFDAALAMPGSTTQQRNVRLLAVDAALAAGDRARAAALLAPLRAALPADASDARAQQLLQQGIEQRAKAVRSSRERPRMSAQTYPAPFQHCQSGDSGNRCELMPADLQGDGGAAQRAYAAYARRDYAEAIGEARQAVQLAPEDASLQGLLTTTLAAGNRSQQDEARQRLDAALAQRPDDAEALMQRGYLNQNAHEPARALADFRAAEATGRAPKGVVLDQAYASAANGDHPQAVTLLRTAIDRADAGELPLDAHQRYNVRNAIANYSREWGVIASAGFRGARQAATNVGGAAISTPGDSVFSTLEAFWRPPAFNDQHGTLELYARLLNTLYDQGGTYESIRAVDPCTGESTPDARARAERLSRSRSTTGWPSTIASFGLRYAFGQTGLSAGIERRQFLGSATRTGDVYPASAAVQCSLQLARNPPLEASTLARYRLASGSGGWMSYLTYGYYHGTDLRTDVNQWWMVSGYAQGGYTWDDNSAHFTLDALDANGTPVRRVGDANGRLHREQWFAAGELRAGRSFRFGAGQTHWVVTPYVVVGADWLDQRSRVRDIRYPLFPAQSFALNDTQRSWSLGAGPGVGVRYWFREDHYNTPRSYLDLTVQYRFAIGGGDTQRAKGLFATAILSY
>CP028899.1|AWB77021.1|707632_709780_+|glycosyl-transferase-family-protein
MDGLFWNIQLANYYAALETTAAAVAVLILISSLDDLFIDVWYWVRESWRALTIKRRDAYRPLTQDDLLQRPQQPLAIMVPAWMEYDVIAQMVENMINVLDYREYVVFVGTYPNDQQTIDEVERMRRRYKRLRRVEVPHDGPTSKADCLNWLILAIFDYEKRHDIEFAGVILHDSEDVLHPMELRFYNYLLPRKDMIQLPVTSLDREWYELVAGVYMDEFAEWHAKDLVVRESVSGMVPSAGVGTCFSRRALLALSAQTDNQPFNTDSLTEDYDVGARLAAMGMQSIFARFPVQFRVRRPSWFGWGPVRERTQQMALCVREYFPDNFRASYRQKARWVLGIGLQSWESLGWRGSLATKYLLARDRKGIITSFVSIIAYLIFLQLLLFWLLKMSGVWTMQFPSVFQAGTWQMTVALLTTAALATRVVQRFYFVNRLYGWEHALMSIPRMVVGNMINFMATARAWKVFLAYLLFGKRMVWDKTMHDFPDAAQLVQTRKQLGELLTTWQAVEPERLQQALDQQHAGRQQPLGRILLTQGWLDDETLAEAIAFQGDLPRAVIDVDYLRACHFPVSADACVQWRMLPLPPRQQGTLRLAVASPLPEEALALLKQETRSEHIEQSIARESEINAGLRLIGGDRHWQLDNVPLLGDLLVEMRLIDHARFEIALDAYKPQRDGRIGDYLVKQGITTEDAVAQAMQEQRRRAAALQSPPPGALPA
>CP028899.1|AWB77020.1|705424_707626_+|hypothetical-protein
MTQTGRSSLFASAAAFVLSGVVGSAHAADSVAGQFTEWSSDSTVNRQMTLRELGFRQPLVLSGQESQREVYLPVPAGVATRDAQLQLDGRYVRGHAGRTSGLWSVDGDPIAARSITDAQGDASQLLAIDGEPRQSGFVRVGVGWWSIVSDYQCADQSAPANVLRLSPDSRFSYRFDGRAVDTVAKAWGALPPRVRLLVDGKALQAPAYDAAWRIGTALQAGGKQVQVVALPKVGDSVDLAGISIPASLQGVPAYAALATGERAHAIRDLAEVGALLSLRDSGPLAADVMIGSDALRAGVRAALDALAVQVGAAGADAGTAFAAWRGTDMGGLEKPAANTSVSVVAVAGRPTLVVDPAAAGKVAGLLAEQWRSYALGRSLQVSAAGTPRLDGDQVLLSRLGNIAGTMDVVTRADRSASFDLGALSADGRLPEQVVIDVSAAPNAAGQGAVATIYLNDYLLGGKLLSANGQPQRLVAKVPAYALSARNEIRVSFLRQPARPYCHDPATGYPVSILPSSHLTLAKRSLGSDFVGASSQLSRGNQVFVPGTWLQDAPASLGKVIAVTSAVGASPEASELKVVEAGAVVSPGAPWLAFGVAPSGVDMAGLKDGHLLIGGKPQPLLDVSGLDRAAVVQVGSSGGQLGVVYSDLGAQSPPFGAPFRLLRGDLAVLDGSDAVREFDRQDPYGTRIAQDGNPQSKWERHMVWLLLLVGVIVFALLAARVTQVRRRKSANTGH
>CP028899.1|AWB77019.1|704244_705420_+|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MKVLSVFGTRPEAIKMGPLVRALAHAADIESVVCITGQHRAMLDQVMALFEITADHDLDVMVPNQTLNGLCSRLFERLDALYTQVRPDYVLVHGDTTTAMTAALAAFHHRIPIGHVEAGLRTGDIHRPWPEEMNRRVIDVVGHQLYAPTPGSRANLAREHLGGQILVTGNTVIDALQQTVQRLDADPALRAQADEPFHMLDPGRRLLLVTGHRRESFGQGFEDICRALAELARRPDLQVLYPVHLNPNVQGPVNAHLGNLDNVHLVPPQDYLRFVRLMQRADVILTDSGGVQEEAPALAKPVLVMRDVTERPEAVEAGVVTLVGTTPSRIVDAVNAVLARPPQPARFDPDASPYGDGRASARIVAALRGAPLPEFSPGVRSSGAVHPIHAK
>CP028899.1|AWB77018.1|702940_703978_+|type-1-fimbrial-protein
MPMISSRGRQALAALAVLGGVLLAQQASAACRIQNSWFIAQDVTMDMGQIVILPSTPVGGVIKEISEPITQQNSVARCDSWTGGRSIGEYVNAAQKRPVAGFSNVYETDVAGVGIRLYRDSGAIQTYYPHSINFGGGSVVSLIGGQFRIQLIKTAAQTGSGVIAPNGRFTNYYFDGDGPGRPVLTSTFKGSGTTVVSPTCEVQAGSRNIAVDFGSVPNTTFTGVGSKAVDRDFEIRLNCQGSNVAAYQSKIGIRLDADQDSSNMPGVLKLSAASNSATRIGIQMVQRDGSTEREVRFGQTISVGTTAPGTSVMALPLRARYVQTQAGTVGAGVANGQATFTIQYE
>CP028899.1|AWB77017.1|700385_702950_+|fimbrial-biogenesis-outer-membrane-usher-protein
MSIHQAICLLVAGVACPGWALAAPANLGEQALMAQSGAANARAPESAQFNSSFLSGQAKQVDLASFTNGNPMVAGTYRVDVYVNGGWQGRRDLQFKADEQGRVDACLPLPMLEEMGVDSEAVLLQQDPTLPTDTTSCVPVQRRMANAYGIYDSGNLRYDLSIPQVFLRREARGYVNPSLWDRGINAGFVGYSFNAIDSDSRVEGGQRNRSAYLGLNAGLNLGGWQFRHDSNLTWSEGNGRHWQSIATYAQRGIPQVRGMLTIGEAYTTGELFDSIGYRGASLASDDRMLPDSLRGYAPVVRGIAETNARIEVRQNQQLIYSSTVSPGSFVIDDLYPTGYGGDLEVSVIEADGRRREFKVPFGSVPQMLREGVSRYSLTAGQVRNKLLADEPWLVQGTYQRGIGNQLTLYGGSALSEGYLSLLYGVGLSTRVGAFAADVTHARTSFDHYGSHTGASVRLSYSNMIGETGTNLTLAAYRYSTEGFYSLQDALYGRDSDKRGIDPTTRGRQRSQFQVTLNQPLGRRGGALYVTGSVRDFYDRSGTSKQYQVGYNNAWRSVNYGFSALRTEEGVLGRSDTQYLLSMSVPLGRGTHPVSFSADLGARDRGGYDNSRVGITGSAGVDNNFSYGVALSDSREGGTTAVGNAEYRSRYSALNATYSHSRDFRQASVGANGSVVVHPGGFTFTPQRGDTMVLVEAPGARDAIVSNAPGLRVDGRGYAVVPYVSPYRLNTVTLDPQGMAHDVELESTSQSIAPFAGAISYLRFDTRKGNALLIQVRNADGRSMPFGAQVKDEQGQPVGMVSQGGRLYVRSEKNQGQLQVEWGAGADQRCTIDYQVPAGADASKTGFIPLEAACR
>CP028899.1|AWB77016.1|699564_700293_+|molecular-chaperone
MKAIFPRALLLAAFTLPFCQSALAGVVVNGTRVIYPAQAREVTVQVDNVGDSPALVQAWIDSGDANQTADNSDAPFVLTPPIARVEPGRSQALRVIFSGAQLPTDRESVFWLNVLDVPPSPDNADSGDQNYLQVAFRSRLKLFYRPQGLKGVANDAPAALRWTRTGDRLRVENPSPFHVTLAEVHAVTGSSEKTVEDKGAMVAPKQSLEFTAPAGSDQVRFITINDYGGRVEHTVRLGSTGG
>CP028899.1|AWB77015.1|698939_699479_+|ferrous-iron-transporter-B
MHKMNLIAALMLAAAPLAANAADGTITFNGKVTDKTCTISTPGGKDFAVTLPTVSKNTLATAGAVAGRTPFAINLTKCSAGNVATYFEPGSTVDFNSGRLVNQASANAATNVQLQLLGSNNQFLPIKAAGAGLAQTNSQWVTVGTDGSADLNYYAEYYATAAATPGDVTSSVKYTIIYN
>CP028899.1|AWB77014.1|698115_698481_-|hypothetical-protein
MRNSILLCVALMSVSALAQASSGSIRFSGRIAEPGCTTNLSQGELSLAACPPSAKGSTVAVTALADGQAATLRDGKRQGQKLSVSASAMRAGDIAFSERYSVQASKQQPLQGAYLVVVDYL
>CP028899.1|AWB77024.1|713748_715065_-|NCS2-family-permease
MSLFERLFQLQQHGTTVRTELLAGVTTFLTMSYIVFVNPEILGTTGMDAGAVFVATCLAAALGSAVMALAANFPVGMAPGMGLNAFFAFTVVGAAGLPWQQALGAVFISGLVFLVLSLTGVRAWLVSGIPASLRSAIVAGIGLFLAIIALQKSGVIVGNEDTLVALGPLNTAPPLLALAGFLLIAVLEARRIRGAILIGILAVTGAGWALGDVQYQGLVSLPPSLAPTFLQLDLPGLLHHNGGAPIAVLLQVVLVFVLVEVFDATGTLYGVVGRAGLLKLPGAQKRFGRALLADSTAIVAGSLLGTSSTTAFAESASGVQVGGRTGLTALVVSALFLAALLFSPLAAMVPGYATAPALLFVAGLMLRELVDVDWSDLTESVPAALCALAMPFTYSIANGLAFGFIAYAALKAGTGRWREVHPAVWLVAVLFALRYALE
>CP028899.1|AWB77025.1|715157_716822_-|energy-dependent-translational-throttle-protein-EttA
MSSQYIYTMNRVSKVVPPKRQIIKDISLSFFPGAKIGLLGLNGAGKSTVLKIMAGVDTDFEGEARPQPGIKVGYLAQEPELDPNKTVRESVEEGVGEVLQAQAALEAVYAAYAEEGADFDALAKEQERLEAILAAGDAHTLENQLDVAADALRLPPWDAKIANLSGGEKRRVALCRLLLQKPDMLLLDEPTNHLDAESVEWLEQFLARYTGTVVAVTHDRYFLDNAAEWILELDRGRGIPWKGNYTEWLVQKDERLKQEENQEKARQKAIQKELEWSRQNAKGGRSKGKARLARLEELQSQDYQKRNETNEIFIPPGERLGNMVMEFKNVSKKFGDRLLIDNLSMLIPPGAIVGIIGPNGAGKSTLFKMITGQEKPDSGEIVIGPTVQLSYVDQSRDKLEGNHNVFQEIAGGLDILNINGIEIQSRAYIGRFNFKGQDQQKMVGSLSGGERGRLHMAKTLLQGGNVLLLDEPSNDLDIETLRALEDALLEFPGNTFVISHDRWFLDRIATHIIAFEGDSHVEFFQGNYREYEEDKKRRMGDDAAPKRLRFKALK
>CP028899.1|AWB77026.1|717076_717547_+|hypothetical-protein
MRINRVMVGAVASVLALGAVTPAFADNDHRRDHDRREWREDRREWRQDRRDWERDRREARRDWERDRRDWHRDHDRYYRPAPPRVVYRPAYGPGYGWKVGHRYRDYYRGPVYVVNDYPRYNLRRPPYGHQWIRDDRGNMLLVAIATGVIAQYVLSR
>CP028899.1|AWB77027.1|717734_718988_+|serine-hydroxymethyltransferase
MFPRDVRIESYDPELAKAIAAETQRQEDHVELIASENYTSPAVMEAQGSQLTNKYAEGYPGKRYYGGCEYVDIAEQLAIDRLKQLFDADYANVQPHSGSQANQAVYFALLQPGDTILGMSLAHGGHLTHGAKVNASGKLFNAVQYGVNDQGLIDYDEVERLALEHKPKMVVAGFSAYSQVIDWARFRAIADKVGAYLFVDMAHVAGLVAAGVYPSPLEHAHVVTSTTHKTLRGPRGGIIIAKGADEDLVKKLQSIVFPGIQGGPLMHVIAGKAVAFKEALKPGFKAYQQQVVKNAQAMANTLIARGYKIVSGGTQNHLMLVDMIGKDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAVTTRGYVEQDCVDLANWIADVLDAPNDDAVIARVRDAVSAQCRKYPVYG
>CP028899.1|AWB77028.1|719112_719532_+|hypothetical-protein
MDERHLKYLYTALAVLFGLPSLVMGGAAATMLLLMGLGQFGHGTLASVTVMPLWGLAGIAGCLAWLWLSAGFLLQGRAGLHVHRLWWWMLLAGGLAALPPLGLALWWGIAVHAEGIGLLLLGPSMLVPAAMLVWIKRRA
>CP028899.1|AWB77029.1|719559_720009_+|hypothetical-protein
MDERLHRRWMAIAGLLVGLPTVAAGGTGAVLGLMVVWDGKYLTGDEHTWLLLWSSAGIIGLLSWLWLSGLFLWRGVAGLRQSPVVAWVGLALGVLAALAVVAAALYFTFKHGEISTLAFLGFGPPLLVMAGHLAWLRWARAAPVPSAPG
>CP028899.1|AWB77030.1|720161_720683_+|transcriptional-regulator-NrdR
MHCPFCQHADTRVIDSRVSEDGATIRRRRECEACGERFSTLETVELKLPAIVKSDGTREAFDQRKVRAGFDRALQKRAVAEDKIEAAVRAVVHQLRISGEREVPSIKVGEFVMNELRKLDHVGYVRFASVYRSFEDVADFREEIEKLERDLPSSTEQLQLLGDVIALTKKKKG
>CP028899.1|AWB77031.1|720803_721889_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MTTSFSVLDHLHMANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALREAGGEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRNAGIDVAEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAREDVQHWRARAGAILTGGDTVLADDPMLTVRLADTEVMAPLRVVLDSRLRSLECSRVREGGAPTLYLHAAAVSAPDAADAEFASVPSAEGRLDLGAVLALLAERGINEVHTEAGATLAGALLRGGWVDELLLYQAPTLLGDNGRPLLAGLGIDAMDQQRRLRVVDQRQVGEDIRLLLRP
>CP028899.1|AWB77032.1|721924_722353_-|hypothetical-protein
MVNAVALFHQGNRMKHRMTSTALMLLALMVCWQAEASRFKATKIIIVQPSVAFESTQLSDRHLDAWMSNDDHCRDFLMYHDQCAVLVLPDEYDDGFTRRQLRFKARQLPGEALGAYCRDLHVLWKQQWKGQCPVGEEDDEAA
>CP028899.1|AWB77033.1|722448_723333_-|hypothetical-protein
MKTPLRTLLASALLAAPLLAGAAPATLTPEQAFDLYARVLLEDDAVATRALNDALKPAFEGQDAVTPNPGALAKALAEPWQVVLASTGAKADAAATEALYAKALRDSKCRASKSVIEDNEYVEDQKLARITFSCQVPDLGKVRPLFAASLAADASPAARRQFTDAYTQALQSGARVPVSGTFTLYPAKDNGYWYSGNFDDLVGTVTGALAPFEDWMQDAQAASAPKVTGVPGCDLLLQQHRACVAKIAPDQISGVDAMTEELKAKAKVKSAEDMTQECKALRPIAEMMWTDECA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028899_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028899_3

1163740-1163832

Orphan

Consensus_repeat	Method
TGCCAACCAAGGTTGGCAACTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028899_3

>merge|CP028899|3|1163740-1163832|CRISPRCasFinder
TGCCAACCAAGGTTGGCAACTACCAGAGCAGTCAGTGCCAACCAAGGTTGGCAACTACCAGGGCAGTCAATGCCAACCAAGGTTGGCAACTAC

>CP028899|3|3|1163740-1163832|CRISPRCasFinder
TGCCAACCAAGGTTGGCAACTAC	CAGAGCAGTCAGTGCCAACCAAGGTTGGCAACTACCAGGGCAGTCAA
TGCCAACCAAGGTTGGCAACTAC

Protein	Signature genes	Signature genes Name	Protein_function
CP028899.1\|AWB77413.1\|1158648_1159194_-\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|225374
CP028899.1\|AWB77414.1\|1159190_1160978_-\|DUF4153-domain-containing-protein	unknown	unknown	gnl\|CDD\|372672
CP028899.1\|AWB77427.1\|1171269_1171722_-\|PTS-fructose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|334031
CP028899.1\|AWB77418.1\|1163181_1163673_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224854
CP028899.1\|AWB77417.1\|1162138_1163089_+\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
CP028899.1\|AWB77423.1\|1168450_1168720_-\|HPr-family-phosphocarrier-protein	unknown	unknown	gnl\|CDD\|273389
CP028899.1\|AWB77426.1\|1170322_1171273_-\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
CP028899.1\|AWB80663.1\|1157880_1158588_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
CP028899.1\|AWB77424.1\|1168712_1169105_-\|PTS-fructose-IIA-subunit-family-protein	unknown	unknown	gnl\|CDD\|225446
CP028899.1\|AWB77419.1\|1163844_1164645_-\|phospholipase	unknown	unknown	gnl\|CDD\|226584
CP028899.1\|AWB77415.1\|1161069_1161636_+\|YqgE/AlgH-family-protein	unknown	unknown	gnl\|CDD\|234694
CP028899.1\|AWB77421.1\|1165088_1166450_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
CP028899.1\|AWB77411.1\|1157030_1157243_+\|DUF4287-domain-containing-protein	unknown	unknown	gnl\|CDD\|379478
CP028899.1\|AWB77422.1\|1166678_1168448_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
CP028899.1\|AWB77420.1\|1164716_1164983_-\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB77428.1\|1171743_1172061_-\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|238308
CP028899.1\|AWB77410.1\|1155835_1156732_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
CP028899.1\|AWB77416.1\|1161628_1162123_+\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
CP028899.1\|AWB77425.1\|1169410_1170295_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
CP028899.1\|AWB77412.1\|1157338_1157788_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181

Protein	Function_ID	Function_description	E-value
CP028899.1\|AWB77413.1\|1158648_1159194_-\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|225374	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair].	3.0125e-60
CP028899.1\|AWB77414.1\|1159190_1160978_-\|DUF4153-domain-containing-protein	gnl\|CDD\|372672	pfam13687, DUF4153, Domain of unknown function (DUF4153). Members of this family are annotated as putative inner membrane proteins.	5.52777e-14
CP028899.1\|AWB77427.1\|1171269_1171722_-\|PTS-fructose-transporter-subunit-IIA	gnl\|CDD\|334031	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.	3.48647e-32
CP028899.1\|AWB77418.1\|1163181_1163673_-\|hypothetical-protein	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.7414e-06
CP028899.1\|AWB77417.1\|1162138_1163089_+\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.40488e-163
CP028899.1\|AWB77423.1\|1168450_1168720_-\|HPr-family-phosphocarrier-protein	gnl\|CDD\|273389	TIGR01003, Phosphocarrier_protein_HPr, Phosphotransferase System HPr (HPr) Family. The HPr family are bacterial proteins (or domains of proteins) which function in phosphoryl transfer system (PTS) systems. They include energy-coupling components which catalyze sugar uptake via a group translocation mechanism. The functions of most of these proteins are not known, but they presumably function in PTS-related regulatory capacities. All seed members are stand-alone HPr proteins, although the model also recognizes HPr domains of PTS fusion proteins. This family includes the related NPr protein. [Signal transduction, PTS].	1.72797e-31
CP028899.1\|AWB77426.1\|1170322_1171273_-\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.55323e-139
CP028899.1\|AWB80663.1\|1157880_1158588_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	2.69256e-40
CP028899.1\|AWB77424.1\|1168712_1169105_-\|PTS-fructose-IIA-subunit-family-protein	gnl\|CDD\|225446	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism].	1.78782e-26
CP028899.1\|AWB77419.1\|1163844_1164645_-\|phospholipase	gnl\|CDD\|226584	COG4099, COG4099, Predicted peptidase [General function prediction only].	1.50903e-31
CP028899.1\|AWB77415.1\|1161069_1161636_+\|YqgE/AlgH-family-protein	gnl\|CDD\|234694	PRK00228, PRK00228, YqgE/AlgH family protein.	1.1814e-85
CP028899.1\|AWB77421.1\|1165088_1166450_-\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	3.49716e-161
CP028899.1\|AWB77411.1\|1157030_1157243_+\|DUF4287-domain-containing-protein	gnl\|CDD\|379478	pfam14117, DUF4287, Domain of unknown function (DUF4287). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 70 and 180 amino acids in length.	1.42794e-23
CP028899.1\|AWB77422.1\|1166678_1168448_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
CP028899.1\|AWB77428.1\|1171743_1172061_-\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	3.16124e-30
CP028899.1\|AWB77410.1\|1155835_1156732_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.72965e-104
CP028899.1\|AWB77416.1\|1161628_1162123_+\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.84642e-51
CP028899.1\|AWB77425.1\|1169410_1170295_-\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.705e-147
CP028899.1\|AWB77412.1\|1157338_1157788_+\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.32339e-12

>CP028899.1|AWB77418.1|1163181_1163673_-|hypothetical-protein
MQNTRLLLGRRSSIGLSYILTTVVHDRAPLFTNAAAAALAVREFQRLDQEGFTRSIAYVVMPDHIHWLVELRAGTLETVMKRFKSRTAQQANRLLGRVGRFWQACYHDHAIRSDESLHRHAMCLMGNPIRAGLATRLGQYPHAWCEWELGASCDPLDNLGADG
>CP028899.1|AWB77417.1|1162138_1163089_+|aspartate-carbamoyltransferase-catalytic-subunit
MTAQQIDASGRLRHLLTLEGLPRGTLLQLLDRAGQIRDAAVGRVGNKRHVLAGSAVCTLFFEPSTRTRSSFQLAAQRLGADVLNFDASTSSTRKGETACDTLRNLEAMGVRGFVVRHPEDGAVAALAEAAGEGTALINAGDGRSAHPTQGLLDMLTLRQAKGPDFSKMKVVIVGDVKHSRVARTDLHALRTLGVGEIRVCGPQSLLPDDETLKGCVVGDDFDAMLEGVDALMMLRLQRERMEEGLVPSLEQYHAQYGLTRERLARAGKDAAVLHPGPINRGVEVTDDVADGPQSWVLRQVANGVAVRMAVLETLLG
>CP028899.1|AWB77416.1|1161628_1162123_+|Holliday-junction-resolvase-RuvX
MSEPATPVPAPAVPAIRRDGTVLGFDVGSRRIGVAIGSAFAAHARAVAVVDVHGNGPDWTAIERLLKEWKPDGLVVGDPLTLDGQDQPNRKRAQGFARQLRERFKLPVVMIDERSSSVEAARRFAVERAEGRKRRRDAAALDAVAAAVIIDRWLSSPDDATPIP
>CP028899.1|AWB77415.1|1161069_1161636_+|YqgE/AlgH-family-protein
MPVTPTSLADHLLVALPSLLDATFARSVALICQHDENGAMGVLVNQPSEYTLGEVLAQMDITTGDGDLQARMVLNGGPVHPERGFVIHDDARAWDSSLIVGDGLYLTTSRDILEAMARGEGPANAVVTLGCAGWGAGQLESELSENSWLTVPADAELVFQLPLEQRWQGAASRIGVDLFRLTDYSGHV
>CP028899.1|AWB77414.1|1159190_1160978_-|DUF4153-domain-containing-protein
MQSSSPLTLPARGAIVLIALLQGLMLYAAQELSDAWPFRDIGWRYCWYAWVLAIPSAVALSLVELGQRRLWLQAVLGSAVVLALAAWIGWNLTGETALESSALQFPLTLGIAVAVFVALPWWQFQLQHGHWRASYPELFERAWQNGLTLALAALFTGLTWLLLWLWAALFQLLEVTVFRDLFRQDAFIALATGSLAGFGVLIGRTQHRAIQITRQVLFAICRGLLPLLSFIAVLFVLSLPLTGLEPLWKTRSAASLLLVLSLLLVTFTNAVYQQGDDTAPYPVVLRRLVEASLLALPVYAALALYALGLRVVQYGWTVDRFWAVLVAVAVAGYAVGYALAVLRRQRRWLQMLEPVNRWMCWAVLALALLGNSPLLDPVRLTLSSQLARLRADPPAITSSDVNVLRFDLGHRGVRALRELQRDPAITADANAPQVIAAALARTSRWDDGQRLDKGPQDVVALQRALKLAKGSSSPPDDWWQALATRAIDGESCAQSERDCLIVHRDLDGDGTGEVLLCELYTIRGPDCVLYARGRDNHWRRAGSLFGTASGQAEAINQALRDGKLTLEPPRWPMLSIGGRPAVAIDPEPESSESSP
>CP028899.1|AWB77413.1|1158648_1159194_-|DNA-3-methyladenine-glycosylase-I
MSGYCLIAPGHPVHDYYHANEYGFPQRDERELFERLVLEINQAGLSWETILKKREGFRAAYDGFDVDRVAAYAEQDIERLLSDAGIIRNRLKVLAAIHNAQVIQQLRASHGSFAAWLDAHHPRSKADWVKLFKKTFRFTGGEITGEFLMSLGYLPGAHAEDCPVHARLLKLSPPWLQAAVR
>CP028899.1|AWB80663.1|1157880_1158588_+|YitT-family-protein
MSLPSHGPAPCDDADGHLVTAGPLTPPPDSAGTTADEKALRHSIAEDVQGMVLATMVASLGLAIFAKGGLMIGGMAGMAFLLHYAMGWNFGLVFVLVNLPFYWVALRRMGWEFTLKTFAAVTACGVLTDLLPRWIDFSHINPLYSAIVGGALSGLGILFFIRHRASLGGIGILAVYLQRTRGWSAGKVQMSYDACLMVAAFFVLSPSKVLYSAIGAVVLSLVLMFNHRPGRYMGV
>CP028899.1|AWB77412.1|1157338_1157788_+|N-acetyltransferase
MQVTLEAITPDNYEAVCDLDVSDAQQGFVASNTWSLVQAAFHPGYQTRAIQADGELVGFFMWVPETPQRMSIWRFMVDQHWQGRGIGRRALELALAQIRATPGLAEIEICYNPRNPVAGAFYGSFGFVETGMDDDGEDMLAVLPVAVPG
>CP028899.1|AWB77411.1|1157030_1157243_+|DUF4287-domain-containing-protein
MSTDTKPKGPASYFPSIEKTYGQPVAHWFGLLAGKKGLKHMELVSFLKSEHGLGHGHANALVAHHLAGKG
>CP028899.1|AWB77410.1|1155835_1156732_-|LysR-family-transcriptional-regulator
MPRENLNDLQAFVHVAREGSFTKAAAQLGVSQSALSHAMRGLEQRLGVRLLTRTTRSVSTTEAGARLLDTLGPRLAEIEDGLAALAEYRERPAGTIRINATGHAAEYIAWPRLAPLLQRYPDLKVELTTDYGLADIVAERYDIGIRLGERLARDMVAVPISPPLRMRVVGAPSYFRQHVVPQHPDDLAKHNCVTLRLPTHGGLMPWDFGQDGNELSVRVGGQWTFNTMGMTRAAALAGSGLAWLPEDQVQPMLDDGRLQSVLDDWCPHFDGYYAYYPSRRHVTVAMRTVLDALRGPLG
>CP028899.1|AWB77419.1|1163844_1164645_-|phospholipase
MVRSMSRWLPLLAFLMMSGCTSLPDSARGRFEGRAVKVDGETAYYQVFIPAGVQATAPTRLPVILFLHGSGERGGDGVKQTHAGLGPHLRRHAADFPALAVFPQVPGHQEWSGRNNRVALAALDATIAEFGADPSRQYLTGMSMGGYGSWNIALDDPGRFAAIVPVCGAVLAPRAVRPTLFVEQVAQETDPYAAIAQRLRGTPIWIFHGALDDVVPPDDDRRLHAAFRSAAARDVRYTEYPDGNHNAWDATYADPAMWAWLFAQKR
>CP028899.1|AWB77420.1|1164716_1164983_-|hypothetical-protein
MATTIENYFQPGWRDQQHTCPACEWKGSSRAMEMELDEDATEYACPVCENPLLVVLHPDIAQVQAAAADGNAEAQEQLDIIASFPRPE
>CP028899.1|AWB77421.1|1165088_1166450_-|magnesium-transporter
MAEAVRHDKTARQLRMLSDALDSGRLGPVRRLVNTLAPAEIGNLLESLPPGKREVVWGLVDPEDDGEVLVHVGEDVRESLLADMDPDEIIAAVEDLDIDDLADLVEDLPDTVIDEVLKSMDRENRERLEQVLSYPEDSAGRLMNPDVVTVRADVNVDVVLRYLRLRGELPDHTDHLFVVSRRHQYLGRVSLAALVTHEDTTPINRLIDDEQPAIDVGESDQEVARQFSDHDWISAPVVDDNNILIGRITIDDVVDIIRGQAEHQALGAAGLDEDEDLFSPVWRAMRRRLMWLSVNLCTAFLASSVVGHFEGTIDKLVALAVLMPIVAGLGGNAGTQVLALMVRGLALGQVGASNARTLLWKEVRVALLNGVMLGSVLGLIVLAWFHSPGLSAVIAIALTCNLLFAALAGVLVPLTLKRFGFDPALASGIFLTAVTDSMGFFTFLGLATLVLLH
>CP028899.1|AWB77422.1|1166678_1168448_-|phosphoenolpyruvate--protein-phosphotransferase
MPRARAGQLPSGQRPVQLLAGHGAARGTAMGRARVRLPHALEVAEQRVAAHQVEAELARLHRALDAARTEMHELRQRLHGALNQEVGEFLDLHALLLDDPELLYGLDELIRSGPYSAGYALRLQRDRLAKVFDGMDDAYLKSRMDDLDHVIGRIHAFLQPERPPVMKGLAGEILVCDNIAPSELAQLQAQGVVGIVTAAGSALSHSAILARSLHLPLIVNVPQLLSRVADGDVLIIDGADGSITVNPLADNLRDYRARLKEHAREQRELGRLRSKPSRTRDQVDIALLANAESLEDVTQAHALGAQGLGLYRTEFLFLQRNELPDEEEQFQTYRDAALGMSGRPVTIRTLDLGADKADRTGLTLSNEENPALGLRGVRLSLARPKVADTQLRAILRASAYGKLRVLVPMVSTREELLAVRRRMLKLSEQLRSEGHMVSEHVPLGAMIEVPAAALALESFIDLVDFLSIGTNDLVQYLLAADRNNEALGELYSPLHPAVLRLLQMVIETGARHRIPVAVCGEMAGDARMTPLLLALGLSEFSLHPGTLLEVRRAIREADLGALRARAPKLLAARDRRAIERWLALVADTP
>CP028899.1|AWB77423.1|1168450_1168720_-|HPr-family-phosphocarrier-protein
MLERELTVSNRLGLHARATAKLVQTLAPFRCNVTMAAKGREINAKSIMGVMLLAAGQGTPVTVRINGEDEAAAMEAVVGLFERRFDEDS
>CP028899.1|AWB77424.1|1168712_1169105_-|PTS-fructose-IIA-subunit-family-protein
MTCGILLVTHPGVGTALLDVATRLLRQLPLKTEAFEVPFDADMDALLPLASAALRRVDSGEGVLILTDLYGASPANLAGQLARLGTPVRRVSALSLPMLLRVMNYPEQGLDQLPATAAAGTRNGAIVDDA
>CP028899.1|AWB77425.1|1169410_1170295_-|RNase-adapter-RapZ
MSTATPSAPTLIIVSGLSGSGKSVALKTFEDQDYYCSDNLPIHLLPDFVRSLLANHDGSAPRRLAVGIDVRGQADLSQLGDWRQLAIDAGVEVKVLFFEASDETVLKRYADTRRRHPLSQLGLSLPEAIARERELTAPLRREADAVIDTSNLNVHQLRRRIITEFAMDHATGLSLLFESFAYKRGVPAEADFVFDARVLPNPHWDPDLRALSGREPGVRDYLEAQPDVQRYLAQLMDFLDTWLPKLGDGTRSYVTVAFGCTGGKHRSVFLAERMARHAREMGWQDVATYHREQD
>CP028899.1|AWB77426.1|1170322_1171273_-|HPr-kinase/phosphorylase
MNTSITARELFEQQRERLGLRWAAGKSGEKRELEAGNTVSRRPSLAGYLNAIYPNKVQILGTEELSWLDALEPRQRWETIEKIMQSHPLALVLTRNQACPEDLRAAADESGTPLWLSPKRGHELLNHLSYHLARTLAPRVILHGVFMEIYSIGVLITGEAGSGKSELALELLSRGHRLVADDAPEFTQIAPDVLDGTCPELLQDLLEVRGLGVLNVREMFGDTAVKKNKYLRLIVHLTKPMTEPTPHGYERLTGDSGTRHVLDLDVPLITLPVMPGRNLAVLTEAATRLHILRTKGIDPAAMFIARHSNLLERRTP
>CP028899.1|AWB77427.1|1171269_1171722_-|PTS-fructose-transporter-subunit-IIA
MPLTDLLAAVQTQLCTATDRDSVLQAAAGLLACRQANAEQIYLNLCQREALGSTAIGHGIAIPHGRAPTLDRPRGALLRLATPVDFGGDEPVDLVFAMAVPAHYTHQHLMLLSELAELFSAPDIRQALREAGDARALREALDMTPPASAA
>CP028899.1|AWB77428.1|1171743_1172061_-|ribosome-associated-translation-inhibitor-RaiA
MRIETFGKDVEVTPALQSYVEEKLARIGKHFDQHCEARVTLKLQKTEHHVDASLNIPGQTLHAEAGGRTMYAAIDLLADKLDRLVIKHKEKKQQHAPLPVGDNGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028899_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028899_4

1790482-1790575

Orphan

Consensus_repeat	Method
GTGCCAACCAAGGTTGGCACCTACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028899_4

>merge|CP028899|4|1790482-1790575|CRISPRCasFinder
GTGCCAACCAAGGTTGGCACCTACCGGAAGACGTGCCTTGGTAGAGGCCGACCTTGGTCGGCGCTTTTGTGCCAACCAAGGTTGGCACCTACCG

>CP028899|4|4|1790482-1790575|CRISPRCasFinder
GTGCCAACCAAGGTTGGCACCTACCG	GAAGACGTGCCTTGGTAGAGGCCGACCTTGGTCGGCGCTTTT
GTGCCAACCAAGGTTGGCACCTACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP028899.1\|AWB77971.1\|1790629_1790953_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|378771
CP028899.1\|AWB77980.1\|1799381_1800608_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP028899.1\|AWB77978.1\|1797102_1798617_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
CP028899.1\|AWB77969.1\|1789000_1789894_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
CP028899.1\|AWB77962.1\|1783196_1784123_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227099
CP028899.1\|AWB77972.1\|1791133_1792558_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340917
CP028899.1\|AWB77963.1\|1784119_1784929_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
CP028899.1\|AWB77964.1\|1785036_1785705_-\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|377734
CP028899.1\|AWB77977.1\|1796725_1797106_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
CP028899.1\|AWB77979.1\|1798815_1799385_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|226933
CP028899.1\|AWB77970.1\|1789926_1790442_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225854
CP028899.1\|AWB77976.1\|1795724_1796564_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
CP028899.1\|AWB77975.1\|1794912_1795728_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
CP028899.1\|AWB77966.1\|1786220_1787621_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224787
CP028899.1\|AWB77968.1\|1788276_1788837_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225337
CP028899.1\|AWB77973.1\|1793009_1794389_+\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|236939
CP028899.1\|AWB77965.1\|1785717_1786224_-\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB77967.1\|1787705_1788185_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|224146
CP028899.1\|AWB77961.1\|1781296_1782217_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
CP028899.1\|AWB77974.1\|1794392_1794878_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872

Protein	Function_ID	Function_description	E-value
CP028899.1\|AWB77971.1\|1790629_1790953_-\|ferredoxin-family-protein	gnl\|CDD\|378771	pfam11953, DUF3470, Domain of unknown function (DUF3470). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 50 amino acids in length. This domain is found associated with pfam00037. This domain has a single completely conserved residue N that may be functionally important.	7.04517e-20
CP028899.1\|AWB77980.1\|1799381_1800608_-\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.00653e-18
CP028899.1\|AWB77967.1\|1787705_1788185_-\|peroxiredoxin	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	7.79932e-70
CP028899.1\|AWB77969.1\|1789000_1789894_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	8.92392e-133
CP028899.1\|AWB77962.1\|1783196_1784123_-\|hypothetical-protein	gnl\|CDD\|227099	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only].	1.24563e-14
CP028899.1\|AWB77963.1\|1784119_1784929_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	7.63905e-131
CP028899.1\|AWB77964.1\|1785036_1785705_-\|DUF1275-domain-containing-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	3.99254e-35
CP028899.1\|AWB77977.1\|1796725_1797106_+\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	4.82894e-72
CP028899.1\|AWB77979.1\|1798815_1799385_-\|DNA-binding-response-regulator	gnl\|CDD\|226933	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].	1.70949e-76
CP028899.1\|AWB77970.1\|1789926_1790442_+\|hypothetical-protein	gnl\|CDD\|225854	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane].	0.00355292
CP028899.1\|AWB77976.1\|1795724_1796564_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	3.54381e-152
CP028899.1\|AWB77975.1\|1794912_1795728_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	1.14163e-145
CP028899.1\|AWB77966.1\|1786220_1787621_-\|PhoH-family-protein	gnl\|CDD\|224787	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].	0
CP028899.1\|AWB77978.1\|1797102_1798617_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
CP028899.1\|AWB77968.1\|1788276_1788837_-\|transcriptional-regulator	gnl\|CDD\|225337	COG2716, GcvR, Glycine cleavage system regulatory protein [Amino acid transport and metabolism].	3.86026e-74
CP028899.1\|AWB77973.1\|1793009_1794389_+\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	1.71425e-170
CP028899.1\|AWB77972.1\|1791133_1792558_+\|MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.72207e-155
CP028899.1\|AWB77961.1\|1781296_1782217_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.50661e-67
CP028899.1\|AWB77974.1\|1794392_1794878_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	3.03267e-64

>CP028899.1|AWB77970.1|1789926_1790442_+|hypothetical-protein
MRQSVSTVRVLSYALLAVAVAAGTTGCFKRGVKGDYALAPEMRPLEVPPDLNLPNATTDNKVPTLASATKPAAPVAAAPAVGNTGFTIAGGKDEAFAKVGTALEGVEGVTIASRAQLLGSYDVAYEGSNFLVRVVAVDAGAYISAVDPRGLPATAEAPVKLIAALKAKLAQ
>CP028899.1|AWB77969.1|1789000_1789894_+|4-hydroxy-tetrahydrodipicolinate-synthase
MSLSGLITALATPFRADGALDPDGWQRLLHLQLEGGVHGVVVAGSTGEAATLTDAEYDQLLASAVERIGGRIPVMAGTGLSGTAKTIEQTRRAAALGASHALVVTPPYVRPTQAGLIAHYRAVADQGGLPVVLYNVPGRTGCDMQPETVAELASHPNIVGIKEAVGDTGRVQALLALRSPKFAVLSGDDGTAARSIRAGIDGLISVGSNVLPGAYRRMCELAAAHDHEATESWDARLHPFHDFCGVEPNPIPVKALLRRIGIGHDLRLPLLPLSAAHHPAADHLAGDIAALEALSSH
>CP028899.1|AWB77968.1|1788276_1788837_-|transcriptional-regulator
MTDTTPRPAPSENHLLINAYTTHPESPLLSVTRRIADSGCNLVDARLATVGRDVSVTALATGSWDSVAKLEAMLTRLEREEGLKLVWYRTAAKQAQSNLLPYIVEVIAADKPGILFQLADFFDRQGITIENLQSTRYRAMQTGAEMFSAQVTIGVPANMHIAALRDDFLEFCDHLNLDAIMDPMKF
>CP028899.1|AWB77967.1|1787705_1788185_-|peroxiredoxin
MNNGDTLDSTTLSLPLALSGGDQATLGDYAGQWLVLYFYPKDSTPGCTTEGIDFNALLPKFKKAGAVVLGVSRDSVKSHDNFCARQGFGFPLVSDGDEALCSAFDVIKMKNMYGKQVRGIERSTFLISPDSRIVQSWRKVKVAGHADAVLAELKASQSK
>CP028899.1|AWB77966.1|1786220_1787621_-|PhoH-family-protein
MTRGKRIYVLDTNVLMHDPTALFKFEEHDIYLPMQVIEELDNGKKGTSEASRNARQVSRFLNELVQESGLDNLADGIPLQRPNGLQLRGKQSAGKLRFQTSHFDAGKSFGKVIPDNAILGAILALKEETPDLPVVFVSKDINLRIKAAIAGIVSEDYENDRALDDFSLLYTGATELPEDFWKRHGDDLRSWSDKGRTHYEIQAQDGEEWYPNQYVYLPGEDEVELRVSRVVGDGKVVLSLVDDFRHGSHAVWGISARNREQNFALNALMDPEIDFVTLLGTAGTGKTLLALAAGLAQTMDQQRYREIIMTRATVSVGEDIGFLPGTEEEKMTPWMGALTDNLEVLTHNQEGGTWGRQATNDLLASRIKIRSMNFMRGRTFLSRYLILDEAQNLTPKQMKTLITRAGPGTKIVCLGNVEQIDTPYLTETTSGLTYAVDRFKNWPHSAHITLRRGERSRLADYASEVL
>CP028899.1|AWB77965.1|1785717_1786224_-|hypothetical-protein
MNRRTRLLLPTAAITLAAVLGACTTTRGPASVPTAERTGQSWVVTRPIIAAQVLDTCSRPSPGREAGRVSGYWAPSRQQIDQLEANLSSLEVQVPKVLDFDRQYVGIESAGRRLIYINAFHLPDDSGINPAREAIRVCDGGAQFWGAVFDPASNTFSELQFNGGFGGP
>CP028899.1|AWB77964.1|1785036_1785705_-|DUF1275-domain-containing-protein
MGIRLPTWVWIGAVALSCVAGMVNVVGFLGFEHQAVSHMTGSTSQLGMALAQGDWRAVGHLWGLLIAFSLGAMLSGLLIQDSTLQLGRRYGVALALESALLLVSIPLFERHQIWGALAAAMACGLQNAMATTFSGAVVRTTHLSGMFTDLGIGLGHLLRGLPLQVRRLTLSGLIISGFLAGGILGAWLFVRWQYDALLAPALLTGLTGLGYVLYQQWARWRH
>CP028899.1|AWB77963.1|1784119_1784929_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MSPTTPVSALTIAGSDSGGGAGIQADLKAFAAHRVHGLSAIAALTAQNTRGVIAVHVPPIDFLRAQLDACFDDFDIHAVKLGMLANAEVINAVADALERHRPPHVVLDPVMVATSGARLLEDSALQAMRERLIPLATLITPNTPEAELLVGRKIGNGDDAERAASALLDLGAGAVLLKGGHLQEGNRVIDRYFDGVSSEEFIHARLPLDAHGTGCTLASAIAAQLCNGLSLANACEAGIDYVARGLQQGYAPGRSEVLVLDHFGAAPHA
>CP028899.1|AWB77962.1|1783196_1784123_-|hypothetical-protein
MSLTPDVLAVQCADGHRYEVIACVPAQPIARLLWLPALGVAARHYLPLAQALAAKGVAVYLHEWRGNGSSSLRPSRTQDWGYREVLEQDLPTSQAVLVAADDEAGALPWIIGGHSLGGQLACVHAGRNPQHFNRLWLAASGSPFWRGFPPPRGWLLPLVYRFLPWIAQRQGVLHGRRLGFGGTEARGLIADWARVGLNNHYAAAGMDEDLDAQMARVHGSAQAVLMEHDWLAPTGSMQTLLAKLPNVDAQLRVLSAQELGTRADHFAWLKVPDAVADRFFIQLDENFHKTVDGTRRHPHNSAPVAGRP
>CP028899.1|AWB77961.1|1781296_1782217_+|LysR-family-transcriptional-regulator
MLKLSLDALQILDAIDRRGSFAGAGKALHKVPSTISYTVAKLEEDLGVQLFDRVGPRAEPTEAGRALLDEGRHLLRAARELELRVRRVASGWETELTLAVDSVFPTWLLGPDIAAFREAEAPTRLRLIGEALSGTWEALLDRRADLLVGAPGEGPSGGGYVVEPLGTVEFVFAVAPDHPLAKVAGVLGREQLVEHCAIAVSDSARRLLPRTVGLLMGQEMLTVPDMASKLKLQCEGVGFGFLPEPCARAAVARGQLVIREVEEHKPEETFWLAWRTGEDGAALRWWRERLRRPELLSQWWQAMAKG
>CP028899.1|AWB77971.1|1790629_1790953_-|ferredoxin-family-protein
MPFVVTENCIKCKHTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPVNAIFPEDDVPAGQEGFVALNAELAKEWPVLTVRKDPPADAGEWDGKPDKLKLLER
>CP028899.1|AWB77972.1|1791133_1792558_+|MFS-transporter
MSQAPSRTASHGGENTAFIVLISCVATLGGFLFGFDSGVINGTVDGLRQAFNSSEAALGFEVASMLLGCAIGAFLAGWLGDRLGRRGVLIVSALMFLVSALGAGAAHASWLFIAARVLGGFAVGAASVMSPAYIAEVASARYRGRLATVQQMAIICGLFAAFLSNYLLARAAGASTEPLWLGHEAWRWMFWMQALPSALFLVLLLVIPESPRFLVLKGRQGQARAVLSRLYGEAAARAKQAEIEASLAQDQHKPRFGDLRSRATGRLRPILWVGIGLAMFQQLVGINVVFYYGAVLWQAVGFSESDALLINVLSGALSIGACLLTVLLIDRIGRKPLLWVGSVGMSVALVLMVVAFASGSLAGGRLQLSDGMGRLALVAANVYVVFFNMSWGPVMWVMLGEMFPNQIRGPALAVAGAAQWTSNFAITVTFPMLLAGIGLAGAYGIYAVAAILSIVFVVRYVRETKGKELEQMEG
>CP028899.1|AWB77973.1|1793009_1794389_+|polynucleotide-adenylyltransferase-PcnB
MGNPETSTGSANIISSATSPFSLRVIPRDQHTISRKDISPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAVRRDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLAAKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLFPESAKALKANRTGALRRMLVEGLANTDARVANDEPVSPAFLFALLLWPAFCRAQATLLKQGVAPEEAQRRAADRVTVQQLSTIALPRRFSLPMQEIWLLQSRFSSRQRKRVFRTLTHPRFRAAFDFLSLRQVASSEHAADVEFWREAQAQSGRELESSLDAMHSEDGDDESGAPRKRRRRRRRPGAAAGAAGE
>CP028899.1|AWB77974.1|1794392_1794878_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MTLAWIGLGANLGDAAATVGAAIAALDGLPGTRLRQASRLYATPAWGNEDQPPFVNAVASVETTLPADELLQAMLALEQRFGRTRDPTVHWGPRALDLDLLLYGAQALDQPGLKVPHPYLHERAFVLVPLAEIAPELTIPGHGRVQDAVMRVDACGIAPIG
>CP028899.1|AWB77975.1|1794912_1795728_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSTHADSKPWTVPALAEAKRNGQKLVMLTAYDAGFARTFDANGVDLILIGDSLGMVVQGHDSTLPVTVADMVYHTRAVARVLQRALLVADLPFGADATPERALDASLQLLQAGAEMVKIEGAGFKVDIIRYLVEREIPVCAHLGLTPQSVLRLGGFKIQGRGDAARQLVEDARAVAAAGASIMVLECVPTPVAAEVTAAVDVPTIGIGAGPQCDGQVLVLHDFLGLDSGHRRPKFVKDFLAEGGSVAGATRAFANAVRDGSFPDEQHAYAQ
>CP028899.1|AWB77976.1|1795724_1796564_+|pantoate--beta-alanine-ligase
MIQTFNELGALREQIAQWKREGLRVALVPTMGNLHGGHHSLVTLARQYADKVVASIFVNPTQFGPNEDFSRYPRTPEADVAGLEQVGCDAVWLPSVETMYPLGVDRTTRMHAPGVSEVLEGASRPGHFDGVCTVVARLFLQVQPDVAVFGRKDYQQLAVIRQMVAELSFPIQIVGAEIVRDEDGLAKSSRNQYLSDEQRPVATTIHRTLLGMREGYVAGQARDRIEADATAALQAAGFQVDYAVLRTPELAEPTFDGGGRVALIAARLGTTRLIDNLEF
>CP028899.1|AWB77977.1|1796725_1797106_+|aspartate-1-decarboxylase
MHLSLLKTKIHRATVTHSELNYEGSIAIDDNLLAATGIREFEQVHIWDVTNGARFSTYAIRAEAGSGVVSLNGGAARHVQVGDIIIIAAFASMTEQEADSFRPKLVYVDGNNQITHTNDTIPTQAA
>CP028899.1|AWB77978.1|1797102_1798617_+|glucose-6-phosphate-isomerase
MTTNNGFDSLHSHAQRLKGASIPSLLAAEPGRVQELALRVGPLYVNFARQKYDAAALQALLALAAERDVGGAITRLFRGEQVNLTEGRAALHTALRGDVVDAPVAAEAYATARGIRQRMGVLVRALEDSGVTDVVSVGIGGSDLGPRLVADALRPVSGARLRVHFVSNVDGAAMQRTLATLDPAKTAGILISKTFGTQETLLNGQILHDWLGGSERLYAVSANPDRAAKAFAIAADRVLPMWDWVGGRYSLWSAVGFPIALAIGFERFEQLLEGAAQMDAHALDAPLERNLPVLHGLTDIWNRNLLGHATHAVMTYDQRLALLPAYLQQLVMESLGKRVQRDGAPVTTDTVPVWWGGAGTDVQHSFFQALHQGTSVVPADFIGCVHNDDPYTINHQALLANLLAQTEALANGQSSDDPHRDYPGGRPSTLILLDALTPQALGALIAMYEHAVYVQSVIWNINAFDQFGVELGKQLASGLLPALQGEDVAVADPMTREILAQLKR
>CP028899.1|AWB77979.1|1798815_1799385_-|DNA-binding-response-regulator
MSLHHSTLGLLVDDDELYLRTLQRSLARKGLEAQTAQDAASALALARQHPPAFALIDLKLGSDSGLALIQPLRALRADMRILLVTGYASIATAVEAIKLGADDYLPKPATVPMILRALGEEDDGPADDGEMEVPDAMTPISRLQWEHIQQAMHETGGNVSAAARLLGMHRRSLQRKLAKRPSPERDPSR
>CP028899.1|AWB77980.1|1799381_1800608_-|sensor-histidine-kinase
MTGPDAPFLRTLCSLRWLAVGGQAATILVATWVLGLPLPQLPLWAGVAVLALFNIYTQLRPDAADTAPLTAFGHILVDVIILTWMVGWSGGMANPFSSLFLILIALAAFALPLRWALAVALACLLGYAASGIFGQPLPDGYFRAQDLNRWGVVANFLISAAVVLAFSTRLALALRERELELSALRERFARNEGIVALATHAASVAHELNTPLATMTLLADDVAERSEEPEVREDMETLRELLVQCRERVLALAAPASADAPGRSHSSAQQVLEQWRLVRPTIDLHRNDDAPLRLPLDPGVGHLLMVLLNNAADAGEKAGRPRVDLDLRIEGDDLIGEVRDYGHGFDARAAVLPGKLFGSSKSEGMGVGLALSHATIERLDGEMWMRPAQGAGSRVGFRLPLAPREDTP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028899_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028899_5

1822066-1822168

Orphan

Consensus_repeat	Method
GGTGGGTGCCAACCTTGGTTGGCAC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP028899_5

>merge|CP028899|5|1822066-1822168|CRISPRCasFinder
GGTGGGTGCCAACCTTGGTTGGCACTCTCCACCCGCGCCGGTAGCTGCCAACCTTGGTTGGCACGCTCGATCCGCCCCGGTAGGTGCCAACCTTGGTTGGCAC

>CP028899|5|5|1822066-1822168|CRISPRCasFinder
GGTGGGTGCCAACCTTGGTTGGCAC	TCTCCACCCGCGCCGGTAGCTGCCAACCTTGGTTGGCACGCTCGATCCGCCCC
GGTAGGTGCCAACCTTGGTTGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP028899.1\|AWB77998.1\|1816540_1817782_+\|lipoprotein-releasing-system-transmembrane-subunit-LolC	unknown	unknown	gnl\|CDD\|274034
CP028899.1\|AWB77996.1\|1815868_1816117_+\|succinate-dehydrogenase-assembly-factor-2-family-protein	unknown	unknown	gnl\|CDD\|225489
CP028899.1\|AWB78007.1\|1825841_1826333_+\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB78004.1\|1822250_1824140_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
CP028899.1\|AWB80689.1\|1829984_1830344_+\|transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
CP028899.1\|AWB77994.1\|1813127_1814918_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236375
CP028899.1\|AWB78000.1\|1818595_1819045_+\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB78003.1\|1820600_1821923_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
CP028899.1\|AWB78008.1\|1826465_1826747_+\|ferredoxin	unknown	unknown	gnl\|CDD\|224066
CP028899.1\|AWB78009.1\|1826743_1828474_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
CP028899.1\|AWB78010.1\|1828594_1829482_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293839
CP028899.1\|AWB78006.1\|1825271_1825781_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
CP028899.1\|AWB78001.1\|1819118_1819388_-\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
CP028899.1\|AWB78005.1\|1824666_1825245_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
CP028899.1\|AWB77995.1\|1814984_1815770_+\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
CP028899.1\|AWB77999.1\|1817774_1818488_+\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|131266
CP028899.1\|AWB77997.1\|1816067_1816517_+\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB78011.1\|1829567_1829861_-\|starvation-inducible-protein	unknown	unknown	gnl\|CDD\|183165
CP028899.1\|AWB78012.1\|1830324_1830804_+\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|176905
CP028899.1\|AWB78002.1\|1819393_1820518_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115

Protein	Function_ID	Function_description	E-value
CP028899.1\|AWB77998.1\|1816540_1817782_+\|lipoprotein-releasing-system-transmembrane-subunit-LolC	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	1.81992e-156
CP028899.1\|AWB77996.1\|1815868_1816117_+\|succinate-dehydrogenase-assembly-factor-2-family-protein	gnl\|CDD\|225489	COG2938, COG2938, Uncharacterized conserved protein [Function unknown].	4.27169e-25
CP028899.1\|AWB78004.1\|1822250_1824140_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
CP028899.1\|AWB80689.1\|1829984_1830344_+\|transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	6.35279e-14
CP028899.1\|AWB77994.1\|1813127_1814918_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236375	PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
CP028899.1\|AWB78012.1\|1830324_1830804_+\|polyketide-cyclase	gnl\|CDD\|176905	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	3.66352e-84
CP028899.1\|AWB78003.1\|1820600_1821923_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	8.54308e-173
CP028899.1\|AWB78008.1\|1826465_1826747_+\|ferredoxin	gnl\|CDD\|224066	COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion].	9.80646e-07
CP028899.1\|AWB78009.1\|1826743_1828474_+\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
CP028899.1\|AWB78010.1\|1828594_1829482_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293839	cd16281, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.33586e-132
CP028899.1\|AWB78006.1\|1825271_1825781_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	7.42066e-97
CP028899.1\|AWB78001.1\|1819118_1819388_-\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	2.2368e-53
CP028899.1\|AWB78005.1\|1824666_1825245_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	7.32305e-65
CP028899.1\|AWB77995.1\|1814984_1815770_+\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	4.69825e-173
CP028899.1\|AWB77999.1\|1817774_1818488_+\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	gnl\|CDD\|131266	TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking].	8.13008e-124
CP028899.1\|AWB78011.1\|1829567_1829861_-\|starvation-inducible-protein	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	2.06081e-15
CP028899.1\|AWB78002.1\|1819393_1820518_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.13091e-136

>CP028899.1|AWB78003.1|1820600_1821923_-|signal-recognition-particle-docking-protein-FtsY
MLSFFRRKKPQDAPAAEAPKTQHYSAEELAAAFPSAAPIEDKEPAPVAVPAAPAPVEPPPAAVVPVAVEPTPVVPAPVVPAPSAPQPAARIDVAPVAAPAIEPAPAPLPESTPALAPVSDDLPAAASVDAVPAPAGKPGWRERLRNSVIARSFGGLFSRNPKLDDDLLDELETALITADVGVGATTDLVEGLRKRMKSREFADANALLAALRAELIAILQPVAKPLVIDRNAKPFVVLTVGVNGVGKTTTIGKLAKRFKDDGHSLMLAAGDTFRAAAVAQLQAWGERNGVAVVAQGQNADAASVAFDALQAGKARGTSVLIADTAGRLHTQSGLMNELGKIRRVLGKIDPTAPHEVLMVIDGTTGQNALSQLRQFNAAVNVTGLVVTKLDGTAKGGVVFALAREFGIPIRFAGIGERPEDLRVFDPEAFVDALLPEALGA
>CP028899.1|AWB78002.1|1819393_1820518_-|A/G-specific-adenine-glycosylase
MPRQPHASAETAERDGFVARLLHWFDGHGRHDLPWQHPRSPYRVWLSEIMLQQTQVATVIPYFQRFLQHFPTLPDLAAASNDAVMAQWAGLGYYARARNLHAAAKRCVELHDGDLPRDFDALHALPGIGRSTAGAILSQAWNDPFAILDGNVKRVLSRYHGIDGFPGLPAIEKQLWSIAEAHVAQVPAGRMADYTQAQMDLGATVCSRAKPACVICPLQYACVARREGRTAELPTPKPSRTLPEREAVALLLRDAQQRVLLQKRPDTGIWAQLWTLPQAEAGSELQDWFDAHVDGTLEDAEELPVLQHTFSHYKLHLQVLSRQVHGLRVEEPTLRWVATDELPALGLPAPIRKLLDGATIKAPKRTPKKPRNHE
>CP028899.1|AWB78001.1|1819118_1819388_-|oxidative-damage-protection-protein
MSRTVFCQYEQRDAEGLDFVPYPGELGQRIFSNIGKQAWAAWLAHQTMLINENRLSPRTPEHRAFLEGELVKFLFEKDAEKPAGFTPET
>CP028899.1|AWB78000.1|1818595_1819045_+|hypothetical-protein
MKTPILIAGLCLALAACATTGRLSSTEKLDLYRAHAGAPQNDMQFFGSLNGWTELGDSALAVWTRPSEAYLLELSGPCPDLSYATAIGLTSSMGRVSSRFDKVLVRDPTGGPRMPCFINSIRKLDVKALRASEQELRQAQVQEREENTK
>CP028899.1|AWB77999.1|1817774_1818488_+|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD
MNKVFNRGDEVIRAEALGKTYAEGRMQTPVFDGLDLTVTAGETVAIIGASGAGKSTLLHLLGGLDVPTAGEVYVTGQRMSALSDTARGLLRNQALGFVYQFHHLLPEFTALENVMMPVLLAGTAVAEASSRATTLLEAVGLGHRLDHKPGELSGGERQRAAVARALVNHPACVLGDEPTGNLDDRTAGTVFELMLELNRARHTSLVLVTHDRSLARRLDRVLELREGRLHALAHADV
>CP028899.1|AWB77998.1|1816540_1817782_+|lipoprotein-releasing-system-transmembrane-subunit-LolC
MFKPIPVAIGLRYLRAKRRNGFISFISMASILGIALGVTVLITTLAVMSGFQKEIRSRLLQMTAHTTISRDGEPMPDWMRVVDVARKDPRVAGAAPYIEIQSMISGPRVQGAIIQGIDPALEPKVSVIDKKVTKGSYASLTPGSFNLLLGKELAIWLGVDVGDQVLVTFAEVQGTPAGAVPRMKRFTVSGIFEAGYNEVDRGVGFANMQDLERVLRSDGATGVRLKLHDMDRSLEVGVDLAQSLGGAYRVSDWTQQNANLYHSLRMEKVVMGILLSLIIAMGAFNLVSSQVMLVTDKQADIAILRTLGLTPGGVMQVFMVQGSLIGIFGTLAGLIGGITLTLNLERILGAIESVFNVKLLPEDVYYITGLPTDMQTGDVVAITVVALLMSFLATLYPAWRAARTQPAEALRYE
>CP028899.1|AWB77997.1|1816067_1816517_+|hypothetical-protein
MRTRSPSCRRSSPSSLEWRPSRLQVAAQLAVLLAAPWLLRASDLPSRLLMPAVVLAWCVGLAELAWCQRRPRVQVLLPPLPEPIRVAGQDVEAPRLVVRGPWLLLRWHQDQRRQRLLFWPDVLDSGQRRELRLAVAARAVSRQPRTMAP
>CP028899.1|AWB77996.1|1815868_1816117_+|succinate-dehydrogenase-assembly-factor-2-family-protein
MEEDVLLKKLRWRCRRGMRELDQLFGRYLDHEWSTAPTEEREVFLFLLDCEDDKLWRWFMGYEACPHAHAIPLMQKILALKP
>CP028899.1|AWB77995.1|1814984_1815770_+|succinate-dehydrogenase-iron-sulfur-subunit
MAEFSLPKNSKITKGKHFPVKNGGKNVRTFKIYRWSPDDDSNPRTDTYEVDLDACGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGTNTLACTRAISDCGKKEVPIYPLPHMNVVKDLVPDLTHFYAQYASIKPWIRTQTPAPPDRERLQSPEDRKKLDGLYECILCACCSTSCPSYWWNGERYLGPAILLQAYRWIIDSRDEDTGARLDDLEDPFKLYRCHTIMNCARTCPKGLNPALAIAEIKKLMMERRA
>CP028899.1|AWB77994.1|1813127_1814918_+|succinate-dehydrogenase-flavoprotein-subunit
MSAYKITEHKYDMVVVGAGGAGLRATFGLAAKGLQTVCLTKVFPTRSHTVAAQGGISAALGNMGEDDWRYHFFDTIKGSDWLGDQDAIEYMCREAIPAIIELEHYGVPFSRTAEGKIYQRPFGGMTTKYGEGPAAQRTCAAADRTGHAMLHTLYQQSLKHDARFMIEYFALDLIFDEEGACRGVLALDMSDGTLHLFRAQGVVLATGGYGRAYFSATSAHTCTGDGGGLAMRAGIAMQDMEFVQFHPTGIYGAGCLITEGVRGEGGILRNSSGERFMERYAPHYKDLASRDVVSRSMTIEIREGRGVGEHKDHILLDLTHLGPGVIDEKLPGIAESARIFAGVDVHKQPIPVIPTVHYNMGGIPTNYHGEVVQKVGDNDNAVVPGLYAIGEAACVSVHGANRLGSNSLLDLVVFGRAVANRCAETIKPGAAHKPLPADACDKALGLLDKLRHANGDTPTSVIRDRMQRTMQADAAVFRTSQTLKEGCEKMDKIFDSFQDVKVSDRSLVWNSDLIETYELNNLLLNAVATINSAEQRKESRGAHAHEDFPDRDDVNWQKHTLVSVDEKGKCSFDYRPVHMYTLTDDVSVVPPKPRVY
>CP028899.1|AWB78004.1|1822250_1824140_-|molecular-chaperone-HtpG
MTETTQTETLGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRFEALTQPALLEGDSELRVRVSFDPAAHTITIEDNGIGMSRAEAIAHLGTIAKSGTGDFLRQLSGDQKKDSQLIGQFGVGFYSAFIVADEVEVTSRRAGLAAGEGVRWTSRGEGDFNVATVDKAERGTRIVLHLKDGEHDFADGWRLRSILKKYSDHIGLPIQMPKEGEEGATVEWETVNRASALWTRPRTEIGDAEYTEFYKHVAHDHSDPLAWSHNKVEGKLEYTSLLYVPGRAPFDLYHRDAPKGLKLYVQRVFVMDQAEQFLPLYLRFIKGVVDSNDLSLNVSREILQSGPVIDSMKAALTKRSLDMLDKLAADKPEQYATFWKEFGQVLKEGPAEDYNNREKVAGLLRFASTRGDGDAQTVSLADYLGRMTEGQDKIYYLTGESYSQVRNSPHLEVFRKKGVEVLLLTDRIDEWLMGYLTDFDGKGFVDIARGDLDLGALETEADKQEQEAAAKDKQGLVERLKTVLGDDVAEVRVSHRLTDSPAVLAIGEQDLGLQMRQILEASGQKVPDSKPVLEINPGHPLIAKLDAEADGARFDDLGRVLFDQAALAAGDSLKDPGAYVTRLNKLLLELSA
>CP028899.1|AWB78005.1|1824666_1825245_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MSGRGGNDGQVRIIGGRWRNTRLPVPTLPGLRPSSDRVRETLFNWLMPKLGGARVLDLFAGSGALGLEAVSRGAAHATLVERDAQLGRNLTAAVARLQASDQITVVQADALRWLQGAQAQQADLVFIDPPFADGLWQDVLAQLPRHLAADAWLYLESPAGHVPVLPPDWLLHREGGTREVRFALYRRATATL
>CP028899.1|AWB78006.1|1825271_1825781_+|pantetheine-phosphate-adenylyltransferase
MTVANRRIAVYPGTFDPITNGHIDLVSRAAPLFEKVVVGVAQSPSKGPALPLEQRVQLARGALAHHGNVEVIGFDTLLAHFVRSVQGGVLLRGLRAVSDFEYEFQMASMNRHLIPEVETLFLTPAEQHSFISSSLVREIARLGGDVSGFVPAAVLEALRKVREAKSAQS
>CP028899.1|AWB78007.1|1825841_1826333_+|hypothetical-protein
MNTTMRAMLIASLALAFTACKKEEAAPVDEAKPALVAPAKDDDAGWKKYLQEVAIQNMGNITNSPFLYYLSPESDPDFQAKYERQTESATQAVARGVQPGNMLAFGSSASGKMADMIQAVFKDVSPDSMKGVRVVFIGQSADNARVQAAIQPTGAEYIFVEAK
>CP028899.1|AWB78008.1|1826465_1826747_+|ferredoxin
MSLKINELCVNCDVCEPACPNQAIAMGETIYVIDPARCTECVGHFDEPQCVVVCPVECIDPDPEIVETEDQLLAKLRQLQHDHPELYAEPPSE
>CP028899.1|AWB78009.1|1826743_1828474_+|gamma-glutamyltransferase
MKTLIVRPLLLLGLLLSPMAWADSPARADRPDGAAIASGHALATQAGIDILAQGGNAFDAAVAVSSTLAVVEPISSGLGGGGFFLLHDAATGKDVMLDARETAPAAATPQAFLDKQGNLDRDRSVNGAWSAGIPGLPAALVELSAKHGKLPLSASLQPAIRIAREGFPVYDRMAKGYASRREVMERYPGTREVYLRNGKPIASGDLFKQPELAQTLERLAAGGFDGFYKGQTGKLLLAGVKQAGGKWTAEELAGYRVKQREPIVFNYNGWKITTAPPPSSGGIALASMLQILEGWDIRKMDPAHRTHLVVESMRRAYRDRTFFLGDPDFVQIPQKVLTSKDYAQGLRATIHPEKATPSDLLSGNPTPLEDDETTHFSIIDRDGNRVGATQTVNLLYGSGLIPKGTGVLLNNEMDDFALKPGTPNAFGVMGYEANAPKAGKRMLSSMTPTFMENADKVVVLGTPGGSRIITMVLLGILGYDDGLDAQQVAALPRYHHQWLPDLIEAEDDAFDAATVKQLQAMGHKIDLPGDVAAGGRGSSHVWGNLQTVEWDRKANKLFGGSDPRNPVGSAQVVPAR
>CP028899.1|AWB78010.1|1828594_1829482_+|MBL-fold-metallo-hydrolase
MKLWSIRGNSQRLDGGAMFGNAPRALWEKWAAPDELNRIELACRALLASPLEGKTVLFETGIGAFFDPRMRERYGVQESQHVLIDSLREAGFEHEDIDVVVLSHLHFDHAGGLLAAWSEGREPELLFPNATYVVGAQHWQRAVQPHPRDRASFIPELPGLLQASGRLEVVDGEYSKALGRSVRFSYSDGHTPGLMLAEIVGHAHAGESAHGGVVFCADLIPGRSWVHVPITMGYDRNAELLIDEKRQFLEDKLARNVRLFFTHDPQVALAQLGRDDKGRFVTLHEQGELKARALG
>CP028899.1|AWB78011.1|1829567_1829861_-|starvation-inducible-protein
MKASFLLAAVLLVGLPLAANATTPQQQRMAECSAKTKGLKGDAYKTAQSSCLSGHAAETKAVNPQQERMRKCNADAGAKKLAGDARKTFMSSCLKSS
>CP028899.1|AWB80689.1|1829984_1830344_+|transcriptional-regulator
MGKYYPAIEDVFQALADPTRCAIVAALGQGPRTVSMLAEPFEMALPSLMKHLAVLERSGVVRSHKQGRTRTCELVPARLGQAEQWLAEQRAAWEARSDRMVDFVETLHRQEQAHGRSRR
>CP028899.1|AWB78012.1|1830324_1830804_+|polyketide-cyclase
MAVAAGNNPATDLVISRVLNAPRAALWRAWTDPELLRQWWCPKPWTTEVRAFDLRPGGAFHTFMQGPDGGSSDNPGSFLEIVPQQRLVFTSMLGAGWRPQSPWLGFTAVITMEDEEQGCRYTARVMHPDKALRDQHEQLGFFDGWNTAIDQLEAFAAGL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028899_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028899_6

3967488-3967588

Orphan

Consensus_repeat	Method
CAGTGCCAACCAAGGTTGGCACCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028899_6

>merge|CP028899|6|3967488-3967588|CRISPRCasFinder
CAGTGCCAACCAAGGTTGGCACCTACCAGGGCAAAGACCCGCTGCAGTAGATACACGCCATGCGTGGATGCATGCGTCAGTGCCAACCGAGGTTGGCACCT

>CP028899|6|6|3967488-3967588|CRISPRCasFinder
CAGTGCCAACCAAGGTTGGCACCT	ACCAGGGCAAAGACCCGCTGCAGTAGATACACGCCATGCGTGGATGCATGCGT
CAGTGCCAACCGAGGTTGGCACCT

Protein	Signature genes	Signature genes Name	Protein_function
CP028899.1\|AWB79819.1\|3965663_3966437_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|183716
CP028899.1\|AWB79816.1\|3962474_3963893_+\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
CP028899.1\|AWB79814.1\|3960037_3961624_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
CP028899.1\|AWB79823.1\|3972246_3972927_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
CP028899.1\|AWB79830.1\|3980344_3981460_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|340846
CP028899.1\|AWB79824.1\|3973063_3973711_+\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
CP028899.1\|AWB79818.1\|3964460_3965522_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
CP028899.1\|AWB79811.1\|3956881_3958618_+\|acetolactate-synthase-2-catalytic-subunit	unknown	unknown	gnl\|CDD\|181601
CP028899.1\|AWB79822.1\|3970996_3972127_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
CP028899.1\|AWB79826.1\|3975186_3976431_-\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|129987
CP028899.1\|AWB79829.1\|3979032_3980364_-\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|225844
CP028899.1\|AWB79815.1\|3961634_3962414_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
CP028899.1\|AWB79821.1\|3967830_3970992_-\|AcrB/AcrD/AcrF-family-protein	unknown	unknown	gnl\|CDD\|223911
CP028899.1\|AWB79827.1\|3976654_3977953_-\|3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589
CP028899.1\|AWB79820.1\|3966554_3967460_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
CP028899.1\|AWB79828.1\|3978013_3978931_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	unknown	unknown	gnl\|CDD\|181542
CP028899.1\|AWB79813.1\|3958949_3960041_+\|serine/threonine-dehydratase	unknown	unknown	gnl\|CDD\|236339
CP028899.1\|AWB79825.1\|3973727_3975086_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273829
CP028899.1\|AWB79817.1\|3963892_3964471_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
CP028899.1\|AWB79812.1\|3958601_3958853_+\|acetolactate-synthase	unknown	unknown	gnl\|CDD\|226486

Protein	Function_ID	Function_description	E-value
CP028899.1\|AWB79819.1\|3965663_3966437_-\|short-chain-dehydrogenase	gnl\|CDD\|183716	PRK12744, PRK12744, SDR family oxidoreductase.	4.77376e-173
CP028899.1\|AWB79816.1\|3962474_3963893_+\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
CP028899.1\|AWB79814.1\|3960037_3961624_+\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
CP028899.1\|AWB79823.1\|3972246_3972927_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	3.9854e-28
CP028899.1\|AWB79830.1\|3980344_3981460_-\|glycosyl-transferase	gnl\|CDD\|340846	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences. This family is most closely related to the GT4 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.	2.08959e-48
CP028899.1\|AWB79824.1\|3973063_3973711_+\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	8.69357e-65
CP028899.1\|AWB79818.1\|3964460_3965522_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
CP028899.1\|AWB79811.1\|3956881_3958618_+\|acetolactate-synthase-2-catalytic-subunit	gnl\|CDD\|181601	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed.	0
CP028899.1\|AWB79822.1\|3970996_3972127_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.15808e-61
CP028899.1\|AWB79826.1\|3975186_3976431_-\|amino-acid-transporter	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	4.03211e-09
CP028899.1\|AWB79829.1\|3979032_3980364_-\|O-antigen-ligase-family-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	1.55425e-18
CP028899.1\|AWB79815.1\|3961634_3962414_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.72489e-22
CP028899.1\|AWB79821.1\|3967830_3970992_-\|AcrB/AcrD/AcrF-family-protein	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP028899.1\|AWB79827.1\|3976654_3977953_-\|3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	0
CP028899.1\|AWB79820.1\|3966554_3967460_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.48762e-98
CP028899.1\|AWB79828.1\|3978013_3978931_+\|lipid-A-biosynthesis-lauroyl-acyltransferase	gnl\|CDD\|181542	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase.	0
CP028899.1\|AWB79813.1\|3958949_3960041_+\|serine/threonine-dehydratase	gnl\|CDD\|236339	PRK08813, PRK08813, threonine dehydratase; Provisional.	0
CP028899.1\|AWB79825.1\|3973727_3975086_+\|hypothetical-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	3.91423e-105
CP028899.1\|AWB79817.1\|3963892_3964471_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	1.12179e-93
CP028899.1\|AWB79812.1\|3958601_3958853_+\|acetolactate-synthase	gnl\|CDD\|226486	COG3978, COG3978, Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown].	2.29252e-22

>CP028899.1|AWB79820.1|3966554_3967460_+|LysR-family-transcriptional-regulator
MDRIDRFRIFTRVVECASFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVSTTHDGDVFHARCLRLIAEVEDAESLFRQDDAQPAGLLKIDVPSRIGRRIIAPALPDFFARYPQLEVDLGMTDRAVNLIEDGCDAVLRVGQLGDSSLVARTLGQLDFVNVAAPAYLREHGVPQHPADLPQHRAVNYASPTTARVEPWEWQDGGQLRTLPMPGWVRVNSAEASIACCVAGLGLLQIPRYDVQAELQSGALVEVMPQYAAQPLPVTLLQPHRQHRALRVQVFVEWLLPVLRIGLQLQ
>CP028899.1|AWB79819.1|3965663_3966437_-|short-chain-dehydrogenase
MTEHSLKGKTVLIAGGAKNLGGLIARDFARQGASAVVIHYNSAATQADAEATVAAVQAAGSRAVALQGDLTSAAAMERLFADAVAAVGRPDIAINTVGKVLKKPLLEISEAEYDEMSAVNAKAAFFFLKEAGRQVNDGGRICTLVTSLLGAFTPFYSSYAGTKAPVEHFTRAASKEFGERGISVTAIGPGPMDTSFFYPAESADAQAYHKTAAALSAFTRTGLTDIADIVPWIRFLVTDGWWMTGQTILVNGGYTTK
>CP028899.1|AWB79818.1|3964460_3965522_+|3-isopropylmalate-dehydrogenase
MHAEIVVLPGDGIGPEVAAAAVAVLKAVAERFNHSFTFSEHDIGGIAIDRHGEPLPASTLAACQAASAVLLGAVGGPKWSDPNAKVRPEQGLLAIRKALGLYANLRPVRTHEAALHASPIKAELLQGVDFVVVRELTGGIYFGDKTRDADSASDLCRYTVAEIERVLRSAFRLARQRRGRVTSVDKANVLETSRLWRDVAARIGREEFPEVALEHQLVDSMAMHLLAKPREYDVIVTENMFGDILTDEASMLAGSLGLLPSASLGEPGAVGIYEPIHGSAPDIAGKGIANPYATIFSAAMLLRHSLGLEDEAAAVEGAVHAVLDDGVFTADLAAKGQAVSTAAATDAVLAKLN
>CP028899.1|AWB79817.1|3963892_3964471_+|3-isopropylmalate-dehydratase-small-subunit
MAGFRTLTSASVVLRQTNIDTDQIIPARFLSTTERAGLGRNAFNDWRWQADGSPVADFAFNQPHNAGRSILLAGRNFGCGSSREHAPWALTDLGLRAIVSSEIADIFRGNSLKNGLLPIVLDEADVQALMQRPDDELTIDVAARELRTPDGRVYSFPLDGFSQTCLLEGVDQLGYLLGRVPEIERYESEHAR
>CP028899.1|AWB79816.1|3962474_3963893_+|3-isopropylmalate-dehydratase-large-subunit
MTSAPRTLYDKLWDAHVVVPESDSAPAVLYIDLHLIHEVTSPQAFTELRERGLSPRRPDRTKATMDHSTPTLPAAADGTLPYASAASEAQVATLARNCAEHGIELFDMASDNRGIVHVIAPEQGFTQPGMTIVCGDSHTSTHGAFGSLAFGIGTSEVGHVLATQCLLQRKAKTLAITVDGPLAPGVGAKDVVLHIIGVIGVNGGTGHVIEFRGSTIEAMDMEQRMTLCNMSIEAGARAGMVAPDQVTFDFVANTPRGPKGADFEAAVARWQQLRSDDGAHFDSEVHIDAADIRPTLTWGTHPGTAIAVDAPIPAANDAAAQKGLDYMHFQAGKALAGTPVDVVFVGSCTNGRLSDMREVAQVLRGRRVADRVRMLVVPGSEIVKREAEAEGIHEIVRAAGAEWREPGCSMCIAMNGDLVAPGQLAVSTSNRNFEGRQGPGSRTLLASPMSAAWAAVNGHVADTRELFAQEVA
>CP028899.1|AWB79815.1|3961634_3962414_+|class-I-SAM-dependent-methyltransferase
MSAFDTPTPASAAGQQWNAQDYAIDAGFVPLLGGAVSRLLDPRAGERILDLGCGDGVLSTELALSGARIHGVDASPELVIAARARGVDAQLMDGHALSFDSEFDAVFSNAALHWMTTPDRVLEGVRRALRPGGRFVAEFGGHGNVATIVAAVQAARVAHGHGASTFRWYFPTADAYADRLRQHGFQVQLIECTPRPTALPTGVAGWLRVFAAPLLDDLPAEARATVREAATALLAELPRDASGQPLADYVRLRVLARRR
>CP028899.1|AWB79814.1|3960037_3961624_+|2-isopropylmalate-synthase
MTTIERITTPRIRIFDTTLRDGEQSPGCSMSPPQKLVMARALDELGVDIIETGFPASSQSDREAMALIGRELRRPSLSLAVLSRCLQADIETSARALEAAANPRLHVFLSTSPLHREHKLRMTREQVLESVRKHVSLARSYIDDVEFSAEDATRTELDYLIEVSRVAIAAGATTINLPDTVGFTTPEEIRAMFQQVIAGVADVPNAANVIFSAHCHNDLGLAVANSLAAIEGGARQVECTINGIGERAGNCSLEEIAMVLKVRQAFYEQDSSINTQRIVGTSQLLQRLVGMPVQRNKAIVGANAFAHESGIHQHGMLRHRGTYEIMRPEDVGWEDSQMVLGRHSGRAAVEARLRALGFWLDEDELKLVFEQFKGLCEQQRVVTDADLQTLMQGGSSAQGYRLASMTISDVGSRANALVELSDPDGNRVAETAQGDGPVDALFGALSAATGVQLMLDSYHVHSVGIGADARGEANLSVRHDGVEYDGTGTSKDIIEASALAWLDVANRLLRQRQAAVHSSTDVPASATA
>CP028899.1|AWB79813.1|3958949_3960041_+|serine/threonine-dehydratase
MPAADASQESDVGDVSVADVLAAQARLRRFLPPTPLHHAERFGTWLKLENLQRTGSYKVRGALNALLAGRERGDTRPVICASAGNHAQGVAWAAYRLDVPAITVMPHGAPATKIAGVAHWGATVRQHGTSYDEAYAFAVELAQRHGYRFLSAFDDADVIAGQGTVGIELAAHAPDVVIVPIGGGGLASGVALALKSQGVRVIGAQVEGVDSMARAIRGDVREIAPVASLADGVRVKIPGFLTRRLCTSLLDDVVIVREAELRETLVRLALEEHIIAEGAGALALAAGRRVAGRRKCAVVSGGNIDAGVLAGLLTDIRPRPPRKPRRRRSETPRSPTTASALASPASSPSPLQAVAPAVEEISL
>CP028899.1|AWB79812.1|3958601_3958853_+|acetolactate-synthase
MQYRLDLVLHPAEGALLRVIGMAERRGFAPRAISGAPVAADDGRWHLQLVVDGQRPAETLCRQIEKIYDCVSVQVTAVEGASV
>CP028899.1|AWB79811.1|3956881_3958618_+|acetolactate-synthase-2-catalytic-subunit
MNSSTHRSAPPNGARWLTQALEAEGIRTLFGYPGGTIMPFYDALVDSSLKHILVRHEQGAALAANGFARASGQVGVCVATSGPGASNLVTGIADAMLDSVPMVCITGQVATPLLGTDAFQELDVFGLTMPIVKHSWLVRSVDDLPRVVADAFRVAREGRPGPVLIDLPKDVQLADASHLPAHVPSSVEPPPAPAEAAIAEAIAALAAAEKPVVYAGGGIALGDAVQDLRDFVEASAIPTVMTLRGLGALPASHPQSLGMLGMHGTRAANMAVQESDLLLVLGARFDDRATGKLAEFAPFARVVHIDADAYEISKLRSADVAVPGNVGHAIRALRAAFPSPKAHQDAWRRRCAQHRDRFSARYDAPGQHIYAPALLKRLSELAPADAVIACDVGQHQMWVAQHCRFNHPRNHLTSGALGTMGFGLPAAMGAQFACPERTVVLVSGDGSFMMNVQELATIARCRLPVKIVLLDNSSLGMVRQWQELFFAERYSEIDLSDNPDFVALAQVFGIAATRIDNRDDVEGGLAALLAEPGPALLHVAIDARANVWPLVPPNTANSTMLESNPAHARQETPNAIPA
>CP028899.1|AWB79821.1|3967830_3970992_-|AcrB/AcrD/AcrF-family-protein
MRRFNLSEWALSNRPLVLFAMLAFALIGAWSYKHLGQSEDPPFTFKAMVVRTLWPGATAEQVSRQVTEPIEKALMNTGEYEFIRSYSRPGESQVIFMARDSLRSRQIPDLWYQVRKRVGDIRATLPREIVGPFFNDEFGDTYGNIYALTGKGFDYAVMRDYADRIQLELQRVPDVGKIDLVGLQDEKVWIELSNTRLATLGVSMQQVQQALADQNAITGTSFFETATDRVQLRVTGQFNDIDAIRQFPIRAGDRTVHLGDIAEVKRGFADPASPKMRFMGEEAIGLAVAMKDGGDILKLGANLDAEFERLQKTLPAGMQLRKVSDQPQSVEESVGEFVQVLTEAVVIVLLVSFFSLGLRTGLVVGVTIPLVLAMTFFVMHYFDIGLHKISLGALVLALGLLVDDAIIAVEMMATKMEQGFDRLRAASFAWESTAFPMLTGTLITAAGFLPIATAASSTGEYTRSLFQVVTIALVVSWIAAVLFIPYLGDKMLPDLFNPQPPKPGSLSARWLAKRQQWADRYPALANLIAPPQHGHDHDPYQRPFYRSFRRFLDACLRRRWWVIAATVALFVFSLMMFRFVPQQFFPDSTRPELMVDIELAEGASLRSTQAQAEKLEKLLSSREGIANYVSYVGTGSPRFYLPLDQQLPATNFAQFVVLAKDIQSRESTRDWLLHEVIPKFPDVQMRVTRLENGPPVGYPVQMRISGEHIEKVQAIARQVEAKVRENPHVMNVNLDWSEPSKVVRLVIDQERARALGVSSAQVSQFLASSLAGQSVSVYREGNRQIEMLLRGPADERNQLELLSSLSMPTANGGSITLSQVATMEYGFEDGIIWHRNRLPTVTVRADISDGMQALDVVHQIVPTLDGIRAELPSGYLLETGGTVEDSARGQNSIKAGMPLFLVVVATLLMLQLRSFSRAAMVLVTAPLGIIGATLFLLLFRAPFGFVALLGTIALAGMIMRNSVILIDQIQQDIDAGHDRWHSIIDATVRRFRPIVLTALAAVLAMIPLSRSAFYGSMAISIMGGLIVGTVLTLVFLPALYAAWFRVKPDESGA
>CP028899.1|AWB79822.1|3970996_3972127_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKIVRWMGGMVWMAALAACSGQEQAPQAAVPVLVVHPGEQAGQAPAAFPGTVRARQESPLSFRVGGNLVKRHVDAGQRVKKGDVLAELDVADFALQARASQAQLAAAEADLVRARDDLKRYQVLADQQLVSRSQLDQQSAAFKAAQGQANAARANLDVLRNQADYAQLRAPSDGVIASREAEAGQVVSAGQTIFNLAADGGREVLIDLPEATIRDYAVGQPVEVELWNRPGQRLPGTIREIAAAADPQARTYATRVSLPADALADVELGQSARVYSSAGRHGTLQLPLGALQRGANGAASVWVVDPANSTLKAASVTTGAYGSESVPVLSGVNAGDWVVAAGGHLLRAGQPVIAVDRQNRPVLKPATPAAAAKAKE
>CP028899.1|AWB79823.1|3972246_3972927_+|TetR/AcrR-family-transcriptional-regulator
MSSHTSRKPSAKPAAKAAGPGRPKDLGKRAAILEAAKTLFIEQGYTGVSMDTIAAQAGVSKLTVYSRFGDKETLFSEAVQSKCIEMLPDALFVADADGPLRDQLIGIGLAFFELITSDAAISIQRMMMAPETDERLRELFWKAGPERTCEALADFLRARAERGELEITDCSLAGEQFLTLVKGEVHMHMMCGMPLSPVECDPLAHVTASIDFFLRAYAPRGAGTAE
>CP028899.1|AWB79824.1|3973063_3973711_+|protein-L-isoaspartate-O-methyltransferase
MTIDYAHARELMVEQQIRPWDVLDIKVLDVLARLPREAFVADAHRALAYADVELPIGHGQKMMKPVIEGRTLQALDLQPGDEVLEIGTGSGFLSACIGALARDVLSLEIDPELAAAARARLDASGLGTNVRVEVADALSWQTERRFDVICVTGAVDVVPSQFASWLRPGGRLFVIHGRSPAMEALLVKADGSSESLFETDIDYLRGAAPAPQFHL
>CP028899.1|AWB79825.1|3973727_3975086_+|hypothetical-protein
MIRRSLAVALATALLPLSAHAADLLQVYEMARNGDPQLSAAESTRLYDKEGAVQARAALLPQINGQAQLNRTRSEPNADANSGSFTNKRRTYTIDGSQTLFNWTQINNLRSQRELSKAADFTLDSANDSLIVRTSAAYFNVLVAIESLNAAQTNEAAAKKQFDFADKRLEVGLAPITDVHEARAQYDQARANTIVAQNTLADNYQALTELTGQPVTNLRGLPADFRPEVPANRGNIDELVQQATTQNPALKAQELKVSAAEAGVQAARGGHYPTLSLGGSWGKSATWGDSTGSGSLSPDARTNSIGLTLSVPIFSGGATQSGVRQALAQRDIAQDGYEQQKRALDRNTRNAYQTLVQGISEVEARRLAVVSAQSAYDASQVGLEVGTRTVLDVIQNQRILFSAQLDYAQARYTFLQNRLLLSQSLGALDVAELQDVNRLLTQDAGNPATTTH
>CP028899.1|AWB79826.1|3975186_3976431_-|amino-acid-transporter
MDGDRGGDGTGGAGLGTDHLAVVALTLLVGGSVIALVGQHTAAQAGPAIVLSLLLAALGASLVLCCLQDLVLRLPAGEGLHGLLAASWGPRVAGVLGMALLLELVATTAGVAQSMALHLHAVLAAEGLQPCDWLPEQVTAAVGLLMLGALALLPPRRVVLVACALLTVKIGAGVLLLALAARHVHYAHWIPWLPPATAPYRFGLGGVLAAAVPLLGVFASVGLALGFPALRRQGAMWQPAVLALVSLLAMLLLIVLAALQAGLVEFSALASTRPLSVALQMHPQLEWMLPLLPLAGATGLAALQLVLLMLALRLATSLWPGVGDAVGRSRGVIVAAVGLPAVMLVLWLPLGTLPALPGPATLLVMAALCLAVLRRRNDMRQGATGRELVLPMLAPLAAALCVLAALERLRAWPG
>CP028899.1|AWB79827.1|3976654_3977953_-|3-deoxy-D-manno-octulosonic-acid-transferase
MRKDPVEWILRGLYSVVLYILLPITVYHLVWRGFRVREYFRRWDERYASYPQPTGQPRVWLHAVSVGEVNAAAPLVNALRQQRPDIRWVITTITPTGSERVRALWGDALDHVYLPYDVPGSVNRFLGHFQPSLALILETELWPNMLFGCRDRGIPVYILNARLSARSLRGYRLLAALIRRALRTVTCVAAQSQDDAERFVQLGADPGQVQALGNLKFDIATPDVQGFVEQFHARVPAARPVWIAASTHDGEEQAVIDLHRRLRQRHPELLLLWAPRHPERFPKVEALAREQGWSVATRRVDQWPHAATDVFVIDTLGELMPFYACAQVAFVGGSLQAIGGHNLLEPAAMGTAAVTGPHLHNFAEISRRMREAGALLIGEDAQAVGDLLQHLLDDAQAREDMARAGCTLVSNGRGALQRTLALVAPHLPPPRE
>CP028899.1|AWB79828.1|3978013_3978931_+|lipid-A-biosynthesis-lauroyl-acyltransferase
MSDASTAVRPSLRDPRNWPMFAAMFGAFAIARLPWMLQRALGRGVGWITWRLLGSRRRAAEVNLQLCFPEKDEAWRQRLVRDSFDALGVGVFECIRAWWGSIDRIRPQVRIEGLEHLRQMEAEGRGVLLVSGHFMTLEMCGRLLCDYVDLSGMYRKHKNPVYEWAVKFGRLRYAKAMFANEDIRATVRHLKKGGFLWYAPDQDMRGKDTVFVPFFGHTASTITATHQLARMTGCAVIPYFHRREGGKYVLKIGAPLENFPSEDVEADTTRVNQAIEEMVREAPDQYLWIHRRFKRQPGGRSDFYK
>CP028899.1|AWB79829.1|3979032_3980364_-|O-antigen-ligase-family-protein
MPISPADPAAIVRDDRAGRWAPWWVLAYVAMWPLPGIAETVLGLGALYAAARMVMRRLQRRPHLLSTAAWALTSILFLGYWLPQAFSAIDAIDPAASWTKAAAGLRYLPFMWLVAIAVASPERRRLTFGGLTLITGAWTLDALVQALAGTSPWFWSLEHLKLAVSGHALCPADEAALADRLSGALGPCNLKFGQVLASLSPFLLLPMARRFGSAGWLLAAAALGGVLLLAGSRASWITFVLVLGYSGLRQFGWKRLLLLALVAALGTAALTAGVPQLRERVARTAQAWNEDGQGVDEALSGRARIWTAAVCMIEEHPVNGVGGRGFRDAYPACVSDEGPAVWGNQPALHAHQIVLEILAETGVLGLLLWLAAVAQAWRAWRYAPPAARDRARPAMLALAVTVFPLNTHLAFYSAFWGGLTVLLAALFAGSLLARESDESPPMQ
>CP028899.1|AWB79830.1|3980344_3981460_-|glycosyl-transferase
MRRLTVVQLLPALHSGGVERSTLEIAAALVAAGHRALVVSAGGRLVQPLLDSGAEHLTLDIGRKSLLTLRHLPTLRRLFAEVGADVVHARSRLPAWLGLYAIRAMPAAQRPHWVTTVHGLNSPSRYSAVMTSGERVICVSNTVRAFVQRHYPTVPEEKLQVIPRGVDVGQFPRAARADRRPRLALAADYPWLAQVDGPLLLLPGRGTRLKGHAHALRLLADVRAAGVPAQLWLLGTEEPGREAYVADLRRQAAALGVAEAVQISTPTARIALAYAASDLVLQLSDKPEAFGRTVVEALSVGRPVLGWDHGGVGELLQQLQPSGAVPLGDARALGERALALLAQPPSLPTRIPFTLQAMQRDTLRLYADLAG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028899_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028899_7

4553048-4553149

Orphan

Consensus_repeat	Method
GTGTGCCAACCAAGGTTGGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028899_7

>merge|CP028899|7|4553048-4553149|CRISPRCasFinder
GTGTGCCAACCAAGGTTGGCACCCACCGGGACGAATGGGGCCTGGTAGAGGCCGACCTTGGTCGGCGCTTGCCGATTGTGTGTGCCAACCAAGGTTGGCAGC

>CP028899|7|7|4553048-4553149|CRISPRCasFinder
GTGTGCCAACCAAGGTTGGCACC	CACCGGGACGAATGGGGCCTGGTAGAGGCCGACCTTGGTCGGCGCTTGCCGATTGT
GTGTGCCAACCAAGGTTGGCAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP028899.1\|AWB80337.1\|4560290_4560971_-\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
CP028899.1\|AWB80334.1\|4556936_4557377_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226695
CP028899.1\|AWB80329.1\|4550417_4552736_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP028899.1\|AWB80328.1\|4549849_4550239_-\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB80335.1\|4557686_4559453_+\|serine-protease	unknown	unknown	gnl\|CDD\|173789
CP028899.1\|AWB80326.1\|4547790_4549296_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223679
CP028899.1\|AWB80327.1\|4549321_4549756_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240041
CP028899.1\|AWB80322.1\|4545424_4545955_+\|cold-shock-protein	unknown	unknown	unknown
CP028899.1\|AWB80338.1\|4560982_4561315_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894
CP028899.1\|AWB80325.1\|4547225_4547567_-\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB80331.1\|4554155_4554812_+\|exopolysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|368723
CP028899.1\|AWB80323.1\|4546007_4546607_-\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB80324.1\|4546649_4547036_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379733
CP028899.1\|AWB80332.1\|4554877_4555585_-\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB80330.1\|4553172_4554006_-\|sugar-phosphatase	unknown	unknown	gnl\|CDD\|182509
CP028899.1\|AWB80339.1\|4561316_4561952_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|131889
CP028899.1\|AWB80333.1\|4555633_4556944_-\|sorbosone-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|225044
CP028899.1\|AWB80336.1\|4559452_4560031_+\|DNA-breaking-rejoining-protein	unknown	unknown	unknown
CP028899.1\|AWB80321.1\|4545022_4545379_+\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB80810.1\|4543776_4544388_-\|DUF998-domain-containing-protein	unknown	unknown	gnl\|CDD\|377627

Protein	Function_ID	Function_description	E-value
CP028899.1\|AWB80337.1\|4560290_4560971_-\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	1.29578e-50
CP028899.1\|AWB80334.1\|4556936_4557377_-\|hypothetical-protein	gnl\|CDD\|226695	COG4244, COG4244, Predicted membrane protein [Function unknown].	1.41181e-11
CP028899.1\|AWB80329.1\|4550417_4552736_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	6.79053e-21
CP028899.1\|AWB80335.1\|4557686_4559453_+\|serine-protease	gnl\|CDD\|173789	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.	2.29991e-105
CP028899.1\|AWB80339.1\|4561316_4561952_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|131889	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	8.86527e-101
CP028899.1\|AWB80327.1\|4549321_4549756_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240041	cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	3.53469e-22
CP028899.1\|AWB80338.1\|4560982_4561315_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	2.63023e-34
CP028899.1\|AWB80331.1\|4554155_4554812_+\|exopolysaccharide-biosynthesis-protein	gnl\|CDD\|368723	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD. Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion.	3.24514e-42
CP028899.1\|AWB80324.1\|4546649_4547036_-\|hypothetical-protein	gnl\|CDD\|379733	pfam15588, Imm10, Immunity protein 10. A predicted immunity protein with a mostly all-beta fold and a conserved arginine residue. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbor of the toxin gene, usually containing a Pput_2613 deaminase domain. The protein is also found in heterogeneous poly-immunity loci.	3.47627e-18
CP028899.1\|AWB80330.1\|4553172_4554006_-\|sugar-phosphatase	gnl\|CDD\|182509	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional.	3.52246e-178
CP028899.1\|AWB80333.1\|4555633_4556944_-\|sorbosone-dehydrogenase-family-protein	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	5.21853e-95
CP028899.1\|AWB80326.1\|4547790_4549296_+\|ATP-binding-protein	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
CP028899.1\|AWB80810.1\|4543776_4544388_-\|DUF998-domain-containing-protein	gnl\|CDD\|377627	pfam06197, DUF998, Protein of unknown function (DUF998). Family of conserved archaeal proteins.	3.34883e-06

>CP028899.1|AWB80329.1|4550417_4552736_-|TonB-dependent-receptor
MNTPPTTRLALAIIAATTAPAYAADTHDAALDTPTTLNALQVIATPRGAAVAPTQVVGPNRYIINAEDLDAMVTGNNGLAMLKQVPGASYTATDGLGLDISATSLFVRGFRMNEMGITFEGVPLNDNGFLSLTGTSVVNVGVPDGIGAITVSPGGAPVSVFSSSVNGGSLEYRLRDLQDTPSLRVKQGVGSNSTLVTTVSGQSGQLGEHGPKVLVDLQRVSADKYQGEGTQNFLRGDLKLQQDVAWGDVTVFLSDSKAKVWGYNNISFDMISKLGWKADIFYPDYAWAYYVASPENADKSCGAYTCGELSGLIPYDTGQSTRDRVSSINHRFQISPALSGNVQLYNANSHTQATLTDPNVPSPNGAPFSEQVQTPRLNRLGGMLNLQFETGAHTFTAGFWQEKSKAAAKTEWYQQPLLGEGPPLKATGPFDVYGPAFKTDNASSWVTRSRQFYLQDDIVLNDTLKLGVGFKAVDFRTRGGGLGDAKDRPVNGTLRAKSNFLPHVSLFWSPTESTDAFIDLANTMNGYRVAQRGNIGYTASAWTITDQEEFDRVAGTLRPEKNWNLTVGASHRFDRLTITGDVFYNDIHNRLLSAAIGTQFAQINTVRLMPKMHVIGADLGITADLSDHLQFYQGVAVARSYYDSDFVVGDTVYPIKGNAQPGYPQISLVSDLSAHFGDWRFGATSTSYLRQPFTYENDIRVPTFWQVNTYAAYRFGADSAVPGLELRLDVSNLFNRHNIGTATIAGSSFSGDYQTLQRSAPRQLMFSTSMAF
>CP028899.1|AWB80328.1|4549849_4550239_-|hypothetical-protein
MLLGHPVGMAQHNPRTPLFGIRGPGRPRQALSVAPAIDLQGEYQFWQVYERVVRPLPGGGLRRAWLVCQKVYRDRLRFPHDTREAALARVLFGSNSTPERAAELQDLFGLVSRRMASVAVRRQAPIPGK
>CP028899.1|AWB80327.1|4549321_4549756_-|NUDIX-domain-containing-protein
MEIRRSARLVIVAEDAVLLFRYHDEHHAPFWATPGGELLPGEGYADAARRELREETGLDLPIGVRLEKRDAIYAVARSTPARWLEEYFLVRSPNQPDIQRDGWTEEENATIRAWKWWRVEEMREQPASLFKPEWLPDLFERVPA
>CP028899.1|AWB80326.1|4547790_4549296_+|ATP-binding-protein
MSLALVHSRARAGVDAPLVRVEVHLSGGLPATQIVGLAETSVRESRERVRAALLCARFDFPQRRITLNLAPADLPKEGGRYDLAIALGILAASGQVDPQSLLQYEFLGELGLTGELRPVAGALPAAIAAADAGRILVVPPGNAAEAALAEHADVRVARTLLECCAGLGNPRLLPPVERVDTTPLPLPDLADVRGQAHARRALEVAAAGGHHLLLIGSPGCGKTLLASRLPSLLPDTEEAEALQLAAIASVSGEGLDPRRWRQRPFRAPHHSASAAALVGGGNPPCPGEISLAHHGVLFLDELPEWNRSALETLREPLESGHIRIARAARSVQYPARFQLVAAMNPCPCGWAGDRSNRCLCSDERINRYRARVSGPLLDRIDLHISVARMDAVELRESTPLGEPSAAVRARVEAAHAKQQVRGGLNAHLPPAALRACTRLSEADQDMLEQAIERLQLSARAMHRILRVARTIADLAGCETIQTAHLAEAIGYRQLDRGKAST
>CP028899.1|AWB80325.1|4547225_4547567_-|hypothetical-protein
MQCIRVLMALSLAMGLPGCRDEVESSTYPIGQTGETCTAYKGFERQPPEVVVAELAKRGLDSSRLVHRTVCGPITSWDILPAGASIDRIPPPDAYVSVHLLEDGSVSVSTDRP
>CP028899.1|AWB80324.1|4546649_4547036_-|hypothetical-protein
MYRFKAEVVFIEEDDYCIVVGLADSSTNPSRYVVLQNAKAYDDQDEELGMAHAHIEVGGGLEPCYGGLVHISLRRMELELSLSESAQRKLGITGGIAVTLKTLDNGSKLEAALRKICVAESIPFDLKW
>CP028899.1|AWB80323.1|4546007_4546607_-|hypothetical-protein
MSRDHSFRWMDEVVMNTRRLILIALGMLPAAAGFPAGSPRVDFVSEAFRDGSFIPHVYSERDVLRRYGDGEMVADAAGLIRRRYLDPTTRLEVLMTSNPDVAPEFRTIDEIRVSSISAGQPAAGRTESLRGVKLKGVAMGDPASKAASAAGAYGQRDTEQATLGSFKVERTCGFSEGGSSICFYVRDGKVVAMALGFGP
>CP028899.1|AWB80322.1|4545424_4545955_+|cold-shock-protein
MKMHGLAAAMVCIAVIGAMWVEWPEPAGDQVWAYQKLQPADYRLLHSDALGFVTAKAHEGFELHTRHAGATSFEIRCKGVLVMEVENAPSRVLIRMPADARWRAPDIERLRISFERWLDLHQSQGRLLVESAGPSWVETRFGRFNGLVLDEQRCLLGAPGRRQPDPTNYFSAEVPS
>CP028899.1|AWB80321.1|4545022_4545379_+|hypothetical-protein
MTTPHSPPPRPIQQAPSAAPALAPNSLIAILHAIGAGAAADGQPWPERHPLRSRQMQLSDADCALTGQRIVQEILLAAERTRQNGEPEQYVGDRVMEGLVMADLALTAFIHERMRPKE
>CP028899.1|AWB80810.1|4543776_4544388_-|DUF998-domain-containing-protein
MTVRVTPNRLLLSAGLIPLPWFLFWTSVAAVFAPGFNPLAQHASELLQAPTLASICGRIAAIGSGVGFVAFSIGVWRESGRRLAVGAICWLVFGISMLTNGLWPMGHPMHGFYTIGIANIIAPAMSHIELSAWSANRRAYAVTAVVSIGGIVYLWLNVVGADPEGFRGLTQRVFSSINSLWPFLVALYLVRRGSSALRTKPAP
>CP028899.1|AWB80330.1|4553172_4554006_-|sugar-phosphatase
MDMGRRQSTIELVAIDMDGTLLDPSHQLTPRARKAIAQARALGVHIVLTSGRPVPGLAPYLHELGITGNDDYCIACNGGLVQRIGTRETVVEYPLSFDDFLFCEQVARDLGVHFQALDSQRMYTPNQDISYYTVADSHLSRMPLSYRRVEDMDPSMSFIKLMMIDEPEVLDAAIARLPSAMTERFAVLKSAPFFLEVFDHRAGKGPSLQKLAEHLGIDRANVMAIGDQENDLTMLQYAGTSVAMGNAIDAVKAVARFETSSNADEGVARAIERFVLQ
>CP028899.1|AWB80331.1|4554155_4554812_+|exopolysaccharide-biosynthesis-protein
MTYRAPETNDSAPLAQQIEQMIDELPGDQVSVGTLLSALGDEGLLLVVILLSAIFIIPVSIPGLSTVFGASILLIGLSRVRDRPLWVPQKLAGRGIATDKLKANLGRALKWVHRMERLSRPMRLAVMVRSKKMMRLNNLMLVFATLLLMAPAGPIPFSNTLPALALMSFAIGFIQRDGAAVAAGYGFVVATVVYFGVLLGGVGFAAESVFNGVRGNSI
>CP028899.1|AWB80332.1|4554877_4555585_-|hypothetical-protein
MLPVDREHRMKLNHETSNVAAFSRNLERELENLGHSAYIAPTDHQDVRLGADVLASDGRNFSLIEFKDEKRDAASEARKPRRKTLCRRLDGWSDIHASCHLIGWRSRQGSSIEFPVRSYGTYVCTPAIIQLPQADITFSSTISIQCETVQEFAQAMVSQKVGVDFQHFRDYVRWLLSLDDDTDDKGENDDANDVELLMCCVVDGKLYTKEFANLAELKLWIDNAPGPSPRRTFVM
>CP028899.1|AWB80333.1|4555633_4556944_-|sorbosone-dehydrogenase-family-protein
MAKHILPTVAALALAVTLSACAGKAEYHPADQSGPQPPLPKPANFLMPPMQVPKGVGWADGQTPTVAEGLKIERIAANLQHPRRLLTLPNGDVLVVEGNGPGEEPVTTPKQWIAGKVKARSGKAGKGGNRVTLLRRSPGTNTWTQHVYIEGLHSPFGIQLIGDTLYVANIGNIMQYHYVPGETRMSDKGREFTDLPSTINHHWTKELLASRDGSKLYVGVGSNSNITENGLAVEYRRAVVLEVDVATRGSRIFASGIRNPTGLDWEPSTGQLWAVANERDEIGADLVPDYLTSVKEDGFYGWPYSYYGQHVDERVQPQRPDLVAKAIVPDYAIGSHVAPLGLLFYTGQALPAQYHGGAFIGEHGSWDRSPLSGYEVVYVPFKDGKPTGRPQTVVSGFTSKDEKTLMGAPVGMAMDAEGALLVADDVGDVVWRVSAR
>CP028899.1|AWB80334.1|4556936_4557377_-|hypothetical-protein
MVNPLAQAHRGLGTTLFSLLNPIPFGFFVGALIFDAIYLNSAEVMWGKAAAWLITFGLLIAIVPRLINLFAVWRRNGTATRIDRIDFFLNLVAVVLAIWNAFVHSRDAYAVAVPGTILSALTVALIALGLILLSLQPPVLQGGRHG
>CP028899.1|AWB80335.1|4557686_4559453_+|serine-protease
MKRHTQRSAPPRSARLALATALVLGSLAATAQAQQADPLAGIQWHLLNTGQTVPADTLPVAGNDLNVDGLFRNGIRGQGVTIAIVDDGLQIAHPDLAANVAAVAGKNFTNGSNNPTPTNPDVDNHGTMVGGIAGAVGANNLGVRGVAPAATLKGFNPISRSALGNQQSNIEYAWWDGAESADVQVFNNSWGAGPGNPNLPLAYSENTIRSYEQALSGTRGGRGGIYVKSAGNNFNNASISQTQDVCTTDTKNRNTGCVPAGRDPRNNLFNVITVGAVRADGVRSSYSSTGSALWVSAFGGEYGLQAQYAPGLVARAYDPAIVTTDVTGCAQGSNKNTNRQNTLDSNLSAIDSTCNYTAKMNGTSASAPMVSGVAALVLEANPNLSYRDVKYILATTATRNHPNQPAVTLADGRTLVPGWTVNAAGRAYSNWYGFGVVNAARAVQVAENFQSLGALVDSGWRNTTRTVAIGNTSAAAARLTFQLANGARNIESVQLGFRVNHRNTRQLQFVLVSPSGTRSVVQPAFTAIGSGTGGAQSNFTSWDLLSSNAFLDENATGTWTLEVTDMGQAATAASRGNLEFFKIRVLGH
>CP028899.1|AWB80336.1|4559452_4560031_+|DNA-breaking-rejoining-protein
MMKTTILLSTLAFAAMTFPAWAQSSGQTPPARTLSTVDAQELKASATGRSFDVGGTRFQLSPSATVKQASGGQFTITPQAAATTSSRTKRSLDGAAAAPADAGAGKFAAAVSRDGAPVVATSRVKVFFTDAASAQRAATATGGTVVKVSKASGQAIVEYPSVNAALDASTKLLSTAGIRATEPDVVQWEETK
>CP028899.1|AWB80337.1|4560290_4560971_-|SCO-family-protein
MKGIAFPHRGLRLAAGLLLGLLAGCSAQSRMDFYAKDIACEELGQQWSMPDSHGTVRGPKDLQGQVTYLFFGFTSCPDVCPTTMVELSQVKHLMGKDADQLQVVFVSVDPARDTPEVARTYVEAFDPKAIALVGNDAQLAAMASDFKAFYEKEPGQVPDTYTMSHIAGGYVFDRQGRLRLFAPYGMPVEKLFSDVQRLLLEPGHPAAGNDALASCHLKHSGTLAAR
>CP028899.1|AWB80338.1|4560982_4561315_-|cytochrome-o-ubiquinol-oxidase-subunit-IV
MAHVETSRAGNAHGSTKSYLIGFVLCALLTVVPFALVMNPVLSRPLTLFLLVGFAVAQILVQLVYFLHMDRKSEGGWNLASFVFTLVILFIVVALSVWIIWSMHYHMMIN
>CP028899.1|AWB80339.1|4561316_4561952_-|cytochrome-o-ubiquinol-oxidase-subunit-III
MNLLTRPELASDTQAHEDHHEHDHGHEQGGMKVFGMWVYLMSDLVLFGSLFASYAVLSTAYAGGPTGKDLFSLPFVMAETFLLLVSSITYGQAVLAMHRHDTSAVLRWLGVTFVLGASFIGMEIYEFSHLIHEGAGPSTSAYLSAFFALVATHGLHVASGLIWMAVVMHQVYRRGLTPTNITRVSCLSLFWHFLDLVWICVFTFVYLIGAF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP028899_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028899_8

4568922-4569049

Orphan

Consensus_repeat	Method
GGCACCCACCCGACCGGTAGTGCCGGCCGCTGGCCGGCGGAAGATTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028899_8

>merge|CP028899|8|4568922-4569049|CRISPRCasFinder
GGCACCCACCCGACCGGTAGTGCCGGCCGCTGGCCGGCGGAAGATTCCTCAGCACGGTTGGAATGTGCCAACCAACAGTTGGCACCCACCCGACCGGTAGCGCCGGCCGCTGGCCGGCGGAAGATTCC

>CP028899|8|8|4568922-4569049|CRISPRCasFinder
GGCACCCACCCGACCGGTAGTGCCGGCCGCTGGCCGGCGGAAGATTCC	TCAGCACGGTTGGAATGTGCCAACCAACAGTT
GGCACCCACCCGACCGGTAGCGCCGGCCGCTGGCCGGCGGAAGATTCC

Protein	Signature genes	Signature genes Name	Protein_function
CP028899.1\|AWB80336.1\|4559452_4560031_+\|DNA-breaking-rejoining-protein	unknown	unknown	unknown
CP028899.1\|AWB80338.1\|4560982_4561315_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894
CP028899.1\|AWB80352.1\|4577658_4579497_-\|peptidase	unknown	unknown	gnl\|CDD\|224086
CP028899.1\|AWB80353.1\|4579570_4580083_-\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB80343.1\|4566767_4567367_+\|thiol-disulfide-isomerase	unknown	unknown	unknown
CP028899.1\|AWB80339.1\|4561316_4561952_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|131889
CP028899.1\|AWB80354.1\|4580165_4580792_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368573
CP028899.1\|AWB80341.1\|4563930_4564836_-\|ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|182518
CP028899.1\|AWB80337.1\|4560290_4560971_-\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
CP028899.1\|AWB80350.1\|4575582_4576254_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319898
CP028899.1\|AWB80344.1\|4567376_4568891_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
CP028899.1\|AWB80347.1\|4573020_4573422_-\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB80348.1\|4573607_4574435_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
CP028899.1\|AWB80345.1\|4569099_4570401_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|223594
CP028899.1\|AWB80346.1\|4570400_4572803_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
CP028899.1\|AWB80351.1\|4576255_4577656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377378
CP028899.1\|AWB80811.1\|4566507_4566768_+\|hypothetical-protein	unknown	unknown	unknown
CP028899.1\|AWB80342.1\|4565018_4566434_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
CP028899.1\|AWB80340.1\|4561948_4563925_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131890
CP028899.1\|AWB80349.1\|4574448_4575528_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226651

Protein	Function_ID	Function_description	E-value
CP028899.1\|AWB80338.1\|4560982_4561315_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	2.63023e-34
CP028899.1\|AWB80341.1\|4563930_4564836_-\|ubiquinol-oxidase-subunit-II	gnl\|CDD\|182518	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional.	7.52397e-148
CP028899.1\|AWB80337.1\|4560290_4560971_-\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	1.29578e-50
CP028899.1\|AWB80339.1\|4561316_4561952_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|131889	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	8.86527e-101
CP028899.1\|AWB80354.1\|4580165_4580792_+\|hypothetical-protein	gnl\|CDD\|368573	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family. Amidase_YiiX is a family of permuted papain-like amidases. It has amidase specificity for the amide bond between a lipid and an amino acid (or peptide). From the structure, a tetramer, each monomer is made up of a layered alpha-beta fold with a central, 6-stranded, antiparallel beta-sheet that is protected by helices on either side. The catalytic Cys154 in UniProtKB:Q74NK7, Structure 3kw0, is located on the N-terminus of helix alphaF. The two additional helices located above Cys154 contribute to the formation of the active site, where the lysine ligand is bound.	2.66234e-35
CP028899.1\|AWB80348.1\|4573607_4574435_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.21889e-27
CP028899.1\|AWB80346.1\|4570400_4572803_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	6.75626e-68
CP028899.1\|AWB80350.1\|4575582_4576254_+\|hypothetical-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	0.000202749
CP028899.1\|AWB80344.1\|4567376_4568891_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.20636e-94
CP028899.1\|AWB80352.1\|4577658_4579497_-\|peptidase	gnl\|CDD\|224086	COG1164, COG1164, Oligoendopeptidase F [Amino acid transport and metabolism].	2.27687e-27
CP028899.1\|AWB80345.1\|4569099_4570401_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	1.16174e-56
CP028899.1\|AWB80351.1\|4576255_4577656_-\|hypothetical-protein	gnl\|CDD\|377378	pfam04536, TPM_phosphatase, TPM domain. This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 and MOLO-1. In Arabidopsis, this domain is called the thylakoid acid phosphatase -TAP - domain and has a Rossmann-like fold. In plants, the family resides in the thylakoid lumen attached to the outer membrane of the chloroplast/plastid. It is active in the photosystem II.	2.41221e-46
CP028899.1\|AWB80349.1\|4574448_4575528_+\|hypothetical-protein	gnl\|CDD\|226651	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only].	3.85436e-28
CP028899.1\|AWB80340.1\|4561948_4563925_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	gnl\|CDD\|131890	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	0
CP028899.1\|AWB80342.1\|4565018_4566434_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	9.09147e-107

>CP028899.1|AWB80344.1|4567376_4568891_+|PLP-dependent-aminotransferase-family-protein
MTPLTLAAVAATSNNGGHLSEPTDGYGQAPAVGSNDTPRHAPYMPRPDVAAREWVQDVLAHNGPIYLRIVNSLERTVRRGGLAPGQRLPSQRALAQQLGVDLTTVTRAFDEARKRGLIEARGPQGSFIAPPKAGFDQVVDLSMNVPPVPDADALAETLRRGAAAVLARSNAPNLMTYHLGGGNPTDRHAAARWLQPMLGAVEDASLLLTEGAQVALAAILVSQGRDDDAILCDALVYPGLLQAAAALGRRLLPVDSDEHGMCPDALARLARESGARLVYLNPTCQNPTALTLPLQRREALARVLEREGLLAIEDDPYWHLAEDAPTPLAALAPRHVFFVATLSKVISPGLRTAFVQCPSAAHAESMTAALRATRLMGHPLVSALASQLLLDGSAQSLLAQVRSEAHERMRMARYLLAPSLLLRAEGLHAWCRVPAPWTDATLVRTAQLQGLAIAPSSAFCPPGVQHQNGVRLSLGLAADRRQLESALRRIDRLLLSDALPAIER
>CP028899.1|AWB80343.1|4566767_4567367_+|thiol-disulfide-isomerase
MGAAAPRRRWLLPTMIALACLFMAGVAAALWQYFGYSAQSTFTEQAIVFDDSQLRLPSDLAGDTGRIRVVHFWDPACAVCNRETGAHLSYLISMYRRAGIDFYAIRRPGTQGELPEPLRNKVINLPTIDGIEHIPASPAVAIWDRQGHLAYAGPYSIGMVCNSANSFVEPLLDRLVRGETVRPKGLLAVGCYCPWQAKR
>CP028899.1|AWB80811.1|4566507_4566768_+|hypothetical-protein
MRAERLKFHLVMAGCGGFVVLMLAALAWVCLQPQTVDVQAAERHAIEQCVQRSEDPSRSEIQRRAQADSCREMRKQYVHKFGGDAS
>CP028899.1|AWB80342.1|4565018_4566434_+|PLP-dependent-aminotransferase-family-protein
MTPPAAGRRLKHPNRTWVRPFREGAGPLYLQIAQQVREAVDDGVLRPGDRLPPQRDLAQQVGVDLTTVTRAFAELRQAGLLDAQGAGGTFIALSAGNRSTSVDLSMNIPPLLGSAPFAQGMEAGFQHVGQQLGQGELMSYHVGAGTREDRAAAVQWLSPVLGTVGADQVVICPGAQTALCALILARTQPGELIAAEQLTYPGLLAATRVLQRGVVPVAMDAEGMLPEALEEACQLRRPRLLYLVPTIQNPTTATMSAQRRQALLAVAKRHDLTVIEDDPYWLLAGDAAPPLAAHRDAGCPVYYISTLSKCLAPGLRTAYLVVPGGEPMEPVLDALRAIALMPTQSMVAVASQWIRSGQAQDMVQRFQQELRERQAIAAQYLPSRARAHPAGLHVWLPLPPRLDQYRLIQAAQEQGLGIASSDAFSVEEPPPGNAIRLSLGGAVDQDALAGALAKLNEILSEAPGARHNAIV
>CP028899.1|AWB80341.1|4563930_4564836_-|ubiquinol-oxidase-subunit-II
MNICWNRIRLALVALACVGLSGCDWVLLDSKGMVGLAQRDLILICIGLMLIVVIPAIVLTFVFAWRFRAGNTKAKYTPDWSHSTKVEIVVWGVPLLIIAGLAVIVWKSTHELDPYKPLDVAGEPLHVDVIATDWKWVFVYPDLGIATVNQLNFPANRPLAFNITSNSTMNTFFIPQLGGQIYAMAGMRTQLHLIANEPGQFRGMSGNYSGHGFSNMKFIATASSNEEFERWVAEVRSAPQALDFNQFKALAAPSKNAPVQHFSSVEPLLFKKVIDQFIGVGENTAAASPAGAAGGAQVSQE
>CP028899.1|AWB80340.1|4561948_4563925_-|cytochrome-o-ubiquinol-oxidase-subunit-I
MLGKLTWEAVPLHEPIVVVTLAAMVLGGLALLGAVTYFKLWGVLWRDWFTTVDHKKIGIMYVVVALVMLVRGFADALMMRAQLAAAGPGSDGFLPPEHYDQIFTAHGVIMIFFVATPFVVGLMNIIVPLQIGARDMAFPFLNAFSFWIFVVGAALMMISLGVGEFAMTGWVAYPPLSGIEFSPGVGVDYYIWALQASGIGTLLTGVNLFITILRMRAPGMTLMKMPVFTWTVLVTSVIIIAAFPILTVALGALTLDRYLDFNFYTNTLGGNPMMYVNLVWAWGHPEVYILVLPAFGIFSEVTATFARKKLFGYKSMVGATLAIGILSFIVWLHHFFTMGSGASVNAFFGIMTMIIAIPTGVKIFTWLFTMYGGRVEFSVPMLWTIAFLVTFTIGGMTGVLLAIPGADFLLHNSLFLVAHFHNTIIGGALFGYLAGFAYWFPKVFGFTLNERLGKWSFACWVIGFYLAFMPLYMLGFMGMTRRMNQYDNPAWTPYLIAAFIGALFVFAGIILMLVQIYVSVRDRKRNLDLTGDPWNARTLEWATPSPPPFYNFAVVPKADELDAFHEAKKRGLPPPPKTYAPIHMPKNTGVPLILNIWILVLCFALVWHIWWMAAASFIAMIVTLIVRSYDEDVDYYVSSEEVARTEAANLAKLKEVRA
>CP028899.1|AWB80339.1|4561316_4561952_-|cytochrome-o-ubiquinol-oxidase-subunit-III
MNLLTRPELASDTQAHEDHHEHDHGHEQGGMKVFGMWVYLMSDLVLFGSLFASYAVLSTAYAGGPTGKDLFSLPFVMAETFLLLVSSITYGQAVLAMHRHDTSAVLRWLGVTFVLGASFIGMEIYEFSHLIHEGAGPSTSAYLSAFFALVATHGLHVASGLIWMAVVMHQVYRRGLTPTNITRVSCLSLFWHFLDLVWICVFTFVYLIGAF
>CP028899.1|AWB80338.1|4560982_4561315_-|cytochrome-o-ubiquinol-oxidase-subunit-IV
MAHVETSRAGNAHGSTKSYLIGFVLCALLTVVPFALVMNPVLSRPLTLFLLVGFAVAQILVQLVYFLHMDRKSEGGWNLASFVFTLVILFIVVALSVWIIWSMHYHMMIN
>CP028899.1|AWB80337.1|4560290_4560971_-|SCO-family-protein
MKGIAFPHRGLRLAAGLLLGLLAGCSAQSRMDFYAKDIACEELGQQWSMPDSHGTVRGPKDLQGQVTYLFFGFTSCPDVCPTTMVELSQVKHLMGKDADQLQVVFVSVDPARDTPEVARTYVEAFDPKAIALVGNDAQLAAMASDFKAFYEKEPGQVPDTYTMSHIAGGYVFDRQGRLRLFAPYGMPVEKLFSDVQRLLLEPGHPAAGNDALASCHLKHSGTLAAR
>CP028899.1|AWB80336.1|4559452_4560031_+|DNA-breaking-rejoining-protein
MMKTTILLSTLAFAAMTFPAWAQSSGQTPPARTLSTVDAQELKASATGRSFDVGGTRFQLSPSATVKQASGGQFTITPQAAATTSSRTKRSLDGAAAAPADAGAGKFAAAVSRDGAPVVATSRVKVFFTDAASAQRAATATGGTVVKVSKASGQAIVEYPSVNAALDASTKLLSTAGIRATEPDVVQWEETK
>CP028899.1|AWB80345.1|4569099_4570401_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MDRNRRVLLRAGALLPAAAALSSLPAMAAAGYAAPMQIPATTVAPDALARDEGYWAAVASHFDITDEVNHLENGYWGAMGRETLASYQRHTAEVNRGNAWYGRHEFPAQYMAVQRQVAELLGVGADEIALTRGATEAMLALIGGYNRLRPGDQVLYADIDYDSMIGAMRWLQQRRGVQVERIALPVVPDHAQILQAYEAAFARLPRLKLVLLTQVSHRHGLVLPVAEIAERARAGGIDVIVDAAHGFGQIDYAVPQLKADFVGINLHKWIGAPVGVGAMYVRRGRVADLDPYMGETDDGRVGSRVHTGTVNFAAYLALPEAIALHQRIGADNKQARLRYLRERWTLPARQMAHIEVLSSPDPALASALASFRLRGRTSVADNIALQKRLLDEHRVFTTHRDGLDSGACVRVTPSVFTRPQQMDALVKALSALA
>CP028899.1|AWB80346.1|4570400_4572803_-|TonB-dependent-receptor
MHRSKLSRSILLALSMASAGGAIATEADAVDAAGGSRAAPTQLDAMLVTGTRASNRTQFETLAPVDVFSKEDIRSVESTDLKDVLAQLVPSFVVQRLPMADGQVFVRPATLRGLSPDQTLVLVNGRRFHRSALLGNRGAQAADLAQIPTSAIKRIEVLRDGASAQYGSDAIAGVINIILEDGPGSEITAGYSQYAQGDGASRDFSARTGWSLGDYGSLVLFAESSTSDATSRTRQRPDAIAFQAAHPELEVPNPVQRWGQPELESRRVGFNVKANASDTLELYAFGLYSHSDGVSDFNWRNPDTTTGAYRTTAIFPGWNLRSLYPVGFSPQYGNVQNDLQLVGGLRGEITPKLRWDVSASYGRNAIDYRLKNSINASLGPASPTDFDLGRLTQTEKNANADFNYEWDVAALSKPINVAFGGEFRQETYQVRAGDPASYAVGPGAAAGLEANSNGAPGFSASQAGQWSQRSKAAYVDMEVPLGERWSIGAASRYEDFSSFGSTLDGKLSARFAITPDVALRGTVSTGFRAPTPAQLNTTSTTQGLDTRTLQIFTSGRLSPNDPLAQLLGARPLKPEESRTASLGLTWRTDLGLSGSVDVYQIKLTDRFSQSASFAIPAGTPNPLGYTSVNYFTNDFDTTTTGVDVVGNYLRDLGAGRMTLTLAYNYNRTRVDNGSTSVATNETQRVLFEDRLPEHKGSLTGSWDIGAWSLMARMRYYGAWTDSSGNAVGDIYQRFGAMSFLDLAVGYRINEHHSLRVGADNVFDRYPDEATFQASRGLVYSRNAPYDTDGANLYAQYRLSF
>CP028899.1|AWB80347.1|4573020_4573422_-|hypothetical-protein
MIEMIEMLLALWVLPSLLTLALMLLMLFGAPRWRGNPWVYRVGFALLGGFLTPTLLGAGHGGLPCATIGGLVMILTQLQWIGDLQVDFMGIGIRNRGIWIMSTPALVVFAAMMFVPLRTARPARFGFGDDANG
>CP028899.1|AWB80348.1|4573607_4574435_+|AraC-family-transcriptional-regulator
MSAAGKALWYIETHADQPLALADIAAAAGLSPFHLSRLFQARTGTSVVRYLRGRRLSAAAQRLANGAGDILQVALGAGYTTHAAFTRAFSEQFGQTPERVREQGTDGLTLVQAIRLDEAPSACIEAPRLLDTSAFQLAGVGMRHTRDSSGAIPGQWAQLNREWPTPAPVSFGVCCNSDDDGGFDYIAALPASTVPSVPAHWRRVDIPARRYLVAWHGGHISAIRSTWFWLLDHYLPASNLSLADAPDLERYDARFDEHSGNGGVEIWLPVEERPH
>CP028899.1|AWB80349.1|4574448_4575528_+|hypothetical-protein
MRMTAAVLGGMLLAFASVGAARESGVAGERHGTTTLASAAVRDAGHRDALRYTAWYPAQAGSRENALTIGPPDAPLFDAGRSAKDAPVAGDRLPTLLLSHGNGGSARMMGWLGTALARAGYLVIAVDHPGNNGVDTMTLPGSLLTWLRADDLRAALAAVQADPVLGPHVDPERLGVAGFSAGGYTALLAAGARPDLQRLRDFCTAHPDDGVCRPQQEAATHTMEARVAAAASPELSPWMSHANDARAIPGVRAVFLLAPAIVQAFAPEQLSSLKQPVSIVLGQADTVAPPQTNGEAARAVIAGAALQVLPGVGHYDFLAACTPAGQQRLQDLCSTSVPKAQTHAQAAEAAIRFFNHSLR
>CP028899.1|AWB80350.1|4575582_4576254_+|hypothetical-protein
MRLLHLTLPVSDVASVATYFHDVLQQRVVGNHVHVGWSTLELQPAAGRPVGGVHLAFNVPDNRFSEAMTWLRERTPLQRNPAGLDYFALESSWQSQSVYFTGPDGLILELIGRRRLPASACEGVFHGSELTCLSEVGLPSRDVEAVRELSNQRFGLQPISPASPQFAPMGDDEGLLIVVAADRRWFPEQKDLPNAQGLLLQVGDVAGPGVVEDVVLGWRVQAA
>CP028899.1|AWB80351.1|4576255_4577656_-|hypothetical-protein
MLRRTTCTRATAWLLMLLCLLPMVVMAGAAVPALDDPVVDAANALSADTRDILRTQAFKLQARTGAQLQVLVVDHAGDEGIEAYAQRVFDQWQLGREGVDDGVLLLVAVQDRRVRIQTGYGLEGAIPDAYAARIIDKAIVPRFRDGDLDQGLLDGTKVVVALIDGEDLPAWEAPAMRNVLPADWRSADSVVALTLLAGFLAGLWRSPPSAPAARMPDDLARRHRERQRGAPREVTTPQARPKRLPAWGRPLLVTAVVAAGLLSAAMWAPRQALAAVCIVLALCVPVASLLGWCWRRSRGVRVVLLGMLGVSSGFLVVMLLRGQLPPSLALHTLLDLAAGIVAMLLFFLVQACRARWHKDRSSFGVRFAVLLLLTAGYVLFALLAIDRADPVARLAATIGWSAGTVVLYFAWIFTMLPGEKARGSRRSSVGHRSASSTPSSSSSASSSSSWSGGGGRSGGGGASGSW
>CP028899.1|AWB80352.1|4577658_4579497_-|peptidase
MQARRMCTITATMTVMLAMAPFTGVQAQSLPADDSAYFASAAAEQAARGELGKRVEALQQASALAPAQRFHQAEALQAQCLRHHSYLHLQAARNARDHRPTQALDQMMGLCSRIAHTGRAALREAPADAAWAAPYAFLRARALKDAAAPASTALDEAVEALADPALDSFARLRGQILRSAEYPQIERDGRHWDTGHDKQALAQQQDRALREAGWKGYWQGLHSRREPMASVLLGLVQVNDAAARLQGDGSAPARGYQRMGLDASAVDATLQAIERHARDRRAYQDMLLRHAARSGIDAPQLWDTTLPDAGYMPPVLTLAQLRDNAADAMQHLGPAYVSELRALLDPANRRMDLATERGDRSQDAFSVSAPGVPAMLFVGVRRGDLESDVEIAHEAGHAMHGEWMQRGHASPLQRNGSQWLTEAFAIYNELRFRDQLYQQAEDPRAKAYYLKSLLDDMVLQLFTSSEEAQLEQSIYEGVADNTLGTADDLDALTGRVLARFGQDPERYPQLRNGWIGKRLMYDDPNYLVNYLYAGLLAVQLFVQDQRDPAGFRERYLAVLGEGFDRAPTEQVAQLLGHAPDWPALVDADMQVFNQAAAQLQALHARIEAGQGT
>CP028899.1|AWB80353.1|4579570_4580083_-|hypothetical-protein
MRRNRSAAVLMLACGVALVACTPEPQVTPTEVAPAHPAPSSTAAAVQPAPVPASGECPYSQFDAFLKHFGNEIALQEKATADPLLDSYIDAEAEPEPRKVESRLALADVEWPVMPDPAALAGQGREMQVSTLADGQRQVQIRTPDSSDQQTYTFAQSPCWTLVKREDESI
>CP028899.1|AWB80354.1|4580165_4580792_+|hypothetical-protein
MRRLLLMIGLLLPALWPALAMAVDVHEGDLLFVTAGRSGLSAAIDDATGKQGAPSFDHVALVAVAPNGWEVLHADEKGSRRQSLVEFRQDARAKQRQIVVYRLRAPQQAAIKDAVATARMMLGKPYNTSYVLNEDSYYCSDFIERAFRAHHVFALQPMNFRNPQTGQIAQHWVDLYRGMGMEVPQDQPGTNPNDMSAAPVLQRIGVLE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

262384 : 337509

Siphoviridae_environmental_samples(18.18%)

head,tRNA,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB76654.1\|262384_262816_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
AWB76655.1\|262820_263423_+	acyltransferase	NA	NA	NA	NA
AWB76656.1\|263533_265690_+	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
AWB76657.1\|265836_266283_-	3-dehydroquinate dehydratase	NA	NA	NA	NA
AWB76658.1\|266286_266688_-	hypothetical protein	NA	NA	NA	NA
AWB76659.1\|266963_267590_+	signal peptidase I	NA	NA	NA	NA
AWB76660.1\|267713_268970_+	MFS transporter	NA	NA	NA	NA
AWB76661.1\|269088_269997_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.6e-07	25.7
AWB76662.1\|270344_271313_-	LysR family transcriptional regulator	NA	NA	NA	NA
AWB76663.1\|271422_273045_+	malate synthase A	NA	NA	NA	NA
AWB76664.1\|273109_274411_+	isocitrate lyase	NA	NA	NA	NA
AWB76665.1\|274843_275884_+	GGDEF domain-containing protein	G3MA91	Bacillus_virus	1.2e-09	31.6
AWB76666.1\|275897_278390_+	putative peptide modification system cyclase	NA	NA	NA	NA
AWB76667.1\|278397_278691_-	putative modified peptide	NA	NA	NA	NA
AWB76668.1\|278829_279996_+	putative peptide maturation dehydrogenase	NA	NA	NA	NA
AWB80628.1\|280015_281998_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA
AWB76669.1\|282039_283650_-	methylcrotonoyl-CoA carboxylase	A0A1B2ITV7	Pike_perch_iridovirus	1.5e-19	65.3
AWB76670.1\|283660_284824_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
AWB76671.1\|284983_285601_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AWB76672.1\|285809_286328_+	cytochrome c5 family protein	NA	NA	NA	NA
AWB76673.1\|286536_287979_+	endonuclease	NA	NA	NA	NA
AWB76674.1\|288101_288959_-	hypothetical protein	NA	NA	NA	NA
AWB76675.1\|289002_289674_+	alpha/beta hydrolase	NA	NA	NA	NA
AWB76676.1\|289670_290771_+	cell division protein ZapE	NA	NA	NA	NA
AWB76677.1\|290871_291708_-	DUF2884 domain-containing protein	NA	NA	NA	NA
AWB76678.1\|292262_294665_+	ribonucleoside-diphosphate reductase subunit alpha	M4QQR4	Ostreococcus_lucimarinus_virus	4.4e-177	43.8
AWB76679.1\|294809_295829_+	ribonucleoside-diphosphate reductase	R4ZDG8	Choristoneura_biennis_entomopoxvirus	7.6e-46	34.6
AWB76680.1\|295961_296597_-	LysE family translocator	NA	NA	NA	NA
AWB76681.1\|296749_297151_+	acyl-CoA thioesterase	NA	NA	NA	NA
AWB76682.1\|297207_298014_+	NAD-dependent protein deacetylase	S5M4R0	Bacillus_phage	1.6e-14	23.3
AWB76683.1\|298155_299256_+	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
AWB80629.1\|299259_300171_-	LysR family transcriptional regulator	NA	NA	NA	NA
AWB80630.1\|300285_301137_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	9.9e-15	40.2
AWB76684.1\|301270_301897_-	bifunctional nicotinamidase/pyrazinamidase	NA	NA	NA	NA
AWB80631.1\|301952_302624_-	hypothetical protein	NA	NA	NA	NA
AWB76685.1\|303163_304573_-	nicotinate phosphoribosyltransferase	A0A218M332	Acidovorax_phage	2.6e-129	51.7
AWB76686.1\|304637_305693_-	NUDIX domain-containing protein	A0A1B0V161	Roseobacter_phage	2.7e-78	45.0
AWB76687.1\|305880_307773_+	RpoH suppressor	NA	NA	NA	NA
AWB76688.1\|307907_309275_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
AWB76689.1\|309390_310896_+	methylmalonate-semialdehyde dehydrogenase (CoA acylating)	NA	NA	NA	NA
AWB76690.1\|310910_312062_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
AWB76691.1\|312058_312856_+	enoyl-CoA hydratase	NA	NA	NA	NA
AWB76692.1\|312852_314028_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
AWB76693.1\|314024_314915_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA
AWB76694.1\|315217_315643_-	organic hydroperoxide resistance protein	NA	NA	NA	NA
AWB76695.1\|315754_316711_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
AWB76696.1\|317089_317602_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
AWB76697.1\|317598_317949_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AWB76698.1\|317972_318329_+	DUF3168 domain-containing protein	NA	NA	NA	NA
AWB76699.1\|318404_319064_+\|tail	phage tail protein	C4ML12	Xanthomonas_virus	9.8e-63	56.5
AWB76700.1\|319063_319372_+	hypothetical protein	NA	NA	NA	NA
AWB80632.1\|319380_319680_+	hypothetical protein	A0A0S2SY90	Pseudomonas_phage	7.0e-08	40.0
AWB76701.1\|319744_322384_+\|tail	phage tail tape measure protein	A0A2R3UAA7	Siphoviridae_environmental_samples	1.9e-32	26.4
AWB76702.1\|322380_322710_+\|tail	phage tail protein	C7BGC9	Burkholderia_phage	9.3e-22	54.5
AWB76703.1\|322712_323885_+	hypothetical protein	A0A0H4IPB2	Stenotrophomonas_phage	6.1e-31	32.1
AWB76704.1\|324002_325154_+	hypothetical protein	Q2PGC1	Xanthomonas_oryzae_phage	1.7e-30	37.8
AWB76705.1\|325186_326341_+	hypothetical protein	A0A0H4IPB2	Stenotrophomonas_phage	1.2e-36	35.0
AWB76706.1\|326440_327577_+	hypothetical protein	A0A0H4IPB2	Stenotrophomonas_phage	1.7e-75	50.2
AWB76707.1\|327728_328424_+\|tail	phage minor tail protein L	A0A2R3UA90	Siphoviridae_environmental_samples	7.4e-93	67.1
AWB76708.1\|328487_329228_+	peptidase P60	A0A2R3UAR4	Siphoviridae_environmental_samples	5.8e-80	58.0
AWB76709.1\|329220_329814_+\|tail	tail assembly protein	W0LI27	Edwardsiella_phage	9.5e-49	53.0
AWB76710.1\|329810_333299_+	DUF1983 domain-containing protein	A0A2R3UA88	Siphoviridae_environmental_samples	0.0e+00	58.1
AWB76711.1\|333298_333577_+	hypothetical protein	NA	NA	NA	NA
AWB76712.1\|333578_334256_+	hypothetical protein	NA	NA	NA	NA
AWB76713.1\|334484_335078_+	DUF1311 domain-containing protein	NA	NA	NA	NA
AWB76714.1\|335103_337509_+	peptidoglycan-binding protein	S5VZH2	Pseudomonas_phage	5.8e-28	38.7

DBSCAN-SWA_2

637453 : 645865

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB76968.1\|637453_638509_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.9e-80	46.5
AWB76969.1\|638523_639411_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.1e-96	58.2
AWB76970.1\|639407_639965_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-45	50.6
AWB76971.1\|639961_640855_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	1.4e-27	36.4
AWB76972.1\|640958_642362_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.0e-48	29.0
AWB76973.1\|642373_643720_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	5.0e-29	26.3
AWB76974.1\|643860_644595_+	CoA transferase subunit A	NA	NA	NA	NA
AWB76975.1\|644596_645229_+	CoA transferase subunit B	NA	NA	NA	NA
AWB76976.1\|645277_645865_+	alpha-ketoglutarate-dependent dioxygenase AlkB	A0A2K9L0M4	Tupanvirus	4.7e-24	33.7

DBSCAN-SWA_3

988187 : 1010219

Rhizobium_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB77259.1\|988187_990680_+	T3/T7 RNA polymerase	L7TQW5	Rhizobium_phage	8.1e-158	38.4
AWB77260.1\|990788_991412_+	hypothetical protein	A0A0H4IN52	Pseudoalteromonas_phage	7.6e-49	48.6
AWB77261.1\|991522_991768_+	hypothetical protein	NA	NA	NA	NA
AWB77262.1\|992068_992452_+	hypothetical protein	NA	NA	NA	NA
AWB77263.1\|992451_993171_+	hypothetical protein	A0A2R2ZGF7	Ralstonia_phage	1.8e-33	40.2
AWB77264.1\|993183_993666_+	RusA family crossover junction endodeoxyribonuclease	S6B1L9	Thermus_phage	6.0e-09	34.8
AWB77265.1\|993662_994118_+	lysozyme	A0A0S2MVL1	Pseudomonas_phage	1.9e-44	58.0
AWB77266.1\|994129_995794_+	DNA primase	L7TLT7	Rhizobium_phage	5.6e-123	47.9
AWB77267.1\|995808_996399_+	hypothetical protein	A0A142EZY0	Stenotrophomonas_phage	7.1e-20	35.1
AWB77268.1\|996444_997101_+	hypothetical protein	NA	NA	NA	NA
AWB77269.1\|997117_999037_+	DNA polymerase	A0A076YNV1	Mesorhizobium_phage	4.2e-146	45.2
AWB77270.1\|999023_999392_+	hypothetical protein	A0A1W6DX99	Sphingobium_phage	6.6e-08	34.9
AWB77271.1\|999396_999822_+	hypothetical protein	NA	NA	NA	NA
AWB77272.1\|999818_1000169_+	hypothetical protein	NA	NA	NA	NA
AWB77273.1\|1000172_1000538_+	hypothetical protein	NA	NA	NA	NA
AWB77274.1\|1000682_1001267_+	hypothetical protein	NA	NA	NA	NA
AWB80658.1\|1001424_1001712_+	hypothetical protein	NA	NA	NA	NA
AWB77275.1\|1001708_1001969_+	hypothetical protein	NA	NA	NA	NA
AWB77276.1\|1001863_1002736_+	exonuclease	A0A1B1IVY4	uncultured_Mediterranean_phage	3.5e-39	36.5
AWB77277.1\|1003097_1003316_+	hypothetical protein	NA	NA	NA	NA
AWB77278.1\|1003315_1003612_+	hypothetical protein	NA	NA	NA	NA
AWB77279.1\|1003612_1005202_+	hypothetical protein	A0A2R2ZGG8	Ralstonia_phage	7.1e-91	44.6
AWB77280.1\|1005198_1005954_+	hypothetical protein	L7TQY4	Rhizobium_phage	1.8e-20	33.9
AWB77281.1\|1006002_1006263_+	hypothetical protein	NA	NA	NA	NA
AWB77282.1\|1006372_1007380_+	hypothetical protein	M1Q5E3	Synechococcus_phage	2.0e-30	31.2
AWB77283.1\|1007442_1008033_+	hypothetical protein	A0A2R2ZGD2	Ralstonia_phage	3.9e-26	39.3
AWB77284.1\|1008035_1010219_+	hypothetical protein	A0A2D0Z1P0	Vibrio_phage	1.6e-85	28.4

DBSCAN-SWA_4

2303041 : 2317452

Stenotrophomonas_phage(92.86%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB78405.1\|2303041_2304712_-	hypothetical protein	S0F314	Stenotrophomonas_phage	3.2e-41	75.4
AWB78406.1\|2304841_2305126_+	hypothetical protein	S0F3S0	Stenotrophomonas_phage	1.8e-13	64.7
AWB78407.1\|2305937_2306237_+	hypothetical protein	NA	NA	NA	NA
AWB78408.1\|2306240_2306444_+	hypothetical protein	S0F2M5	Stenotrophomonas_phage	1.7e-29	97.0
AWB78409.1\|2306452_2306686_+	methyltransferase	A0A1W6DXZ2	Xanthomonas_phage	2.5e-21	80.5
AWB78410.1\|2308210_2308522_+	DUF2523 domain-containing protein	S0F3R9	Stenotrophomonas_phage	1.0e-46	91.2
AWB78411.1\|2308523_2309726_+	hypothetical protein	S0F3F8	Stenotrophomonas_phage	4.0e-195	83.8
AWB78412.1\|2309722_2310349_+	conjugal transfer protein	S0F2N7	Stenotrophomonas_phage	7.3e-84	80.2
AWB78413.1\|2310902_2311241_-	hypothetical protein	S0F2N2	Stenotrophomonas_phage	1.7e-50	91.1
AWB78414.1\|2311443_2311797_+	hypothetical protein	Q4LAU5	Stenotrophomonas_phage	3.8e-37	65.1
AWB80703.1\|2311833_2312064_-	hypothetical protein	NA	NA	NA	NA
AWB78415.1\|2312283_2313576_-	Zona occludens toxin	S0F2C3	Stenotrophomonas_phage	1.6e-237	94.0
AWB78416.1\|2313580_2313979_-	hypothetical protein	S0F3B3	Stenotrophomonas_phage	3.8e-62	96.2
AWB78417.1\|2315593_2315728_-\|capsid	capsid protein	NA	NA	NA	NA
AWB78418.1\|2315775_2316033_-	hypothetical protein	S0F2C2	Stenotrophomonas_phage	7.7e-40	97.6
AWB78419.1\|2316036_2316339_-	single-stranded DNA-binding protein	B1NI78	Stenotrophomonas_phage	1.6e-44	92.8
AWB78420.1\|2316345_2317452_-	replication protein	S0F3I3	Stenotrophomonas_phage	9.0e-210	96.2

DBSCAN-SWA_5

3659369 : 3681258

Xanthomonas_citri_phage(50.0%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB79554.1\|3659369_3663167_-	hypothetical protein	K4NZ44	Pseudomonas_phage	8.8e-148	30.0
AWB79555.1\|3666000_3668241_-	hypothetical protein	K7ZJS6	Xanthomonas_citri_phage	1.2e-147	45.2
AWB79556.1\|3668242_3668788_-	hypothetical protein	K7ZMJ9	Xanthomonas_citri_phage	8.8e-25	62.1
AWB80767.1\|3668823_3669168_-	hypothetical protein	I6Q9W6	Yersinia_phage	1.1e-09	37.4
AWB79557.1\|3669295_3669778_-	hypothetical protein	K7ZPX6	Xanthomonas_citri_phage	3.1e-42	55.3
AWB79558.1\|3669777_3671421_-	hypothetical protein	K7ZLE6	Xanthomonas_citri_phage	1.0e-185	57.1
AWB79559.1\|3671420_3672593_-	hypothetical protein	K7ZRM6	Xanthomonas_citri_phage	2.6e-138	57.0
AWB79560.1\|3672595_3673237_-	hypothetical protein	K7ZJS5	Xanthomonas_citri_phage	1.6e-46	46.3
AWB79561.1\|3673605_3674046_-	hypothetical protein	K4NYY6	Pseudomonas_phage	1.2e-29	51.0
AWB79562.1\|3674088_3675093_-	hypothetical protein	W6MW28	Pseudomonas_phage	1.4e-89	51.1
AWB79563.1\|3675162_3675861_-	hypothetical protein	NA	NA	NA	NA
AWB79564.1\|3675850_3676210_-	hypothetical protein	NA	NA	NA	NA
AWB79565.1\|3676206_3677922_-	hypothetical protein	K7ZJS4	Xanthomonas_citri_phage	2.8e-178	55.6
AWB79566.1\|3677921_3678185_-	hypothetical protein	NA	NA	NA	NA
AWB79567.1\|3678189_3678393_-	hypothetical protein	NA	NA	NA	NA
AWB79568.1\|3678403_3679903_-\|terminase	terminase	G9L6B8	Escherichia_phage	4.6e-140	53.0
AWB79569.1\|3679874_3680330_-\|terminase	terminase small subunit protein	L7TIB4	Pseudomonas_virus	5.6e-25	48.1
AWB79570.1\|3680329_3680797_-	hypothetical protein	NA	NA	NA	NA
AWB79571.1\|3680793_3681258_-	lysozyme	A0A1W6JNW4	Morganella_phage	4.1e-23	42.1

DBSCAN-SWA_6

3692673 : 3702630

Xylella_phage(20.0%)

integrase

attL 3697877:3697892|attR 3707024:3707039

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB80769.1\|3692673_3693528_+	cell envelope biogenesis protein TolA	G5DA88	Enterobacteria_phage	2.9e-14	54.2
AWB80770.1\|3693545_3694502_+	phage recombination protein Bet	U6C6J0	Ralstonia_phage	5.1e-52	53.3
AWB79592.1\|3694498_3695278_+	recombinase	A0A0M3ULE0	Salmonella_phage	2.9e-05	23.6
AWB79593.1\|3695277_3695493_+	DNA-binding protein	NA	NA	NA	NA
AWB79594.1\|3695489_3695711_+	hypothetical protein	NA	NA	NA	NA
AWB79595.1\|3695707_3696160_+	hypothetical protein	A0A0K1LLW1	Caulobacter_phage	1.5e-17	35.7
AWB79596.1\|3696156_3696447_+	hypothetical protein	NA	NA	NA	NA
AWB79597.1\|3696443_3696716_+	hypothetical protein	NA	NA	NA	NA
AWB79598.1\|3696712_3697459_+	hypothetical protein	B7SYG2	Stenotrophomonas_phage	5.1e-07	28.6
AWB79599.1\|3697618_3697828_+	hypothetical protein	NA	NA	NA	NA
3697877:3697892	attL	NA	NA	NA	NA
AWB79600.1\|3697965_3698517_+	adenine methyltransferase	A0A166Y0E3	Gordonia_phage	1.8e-49	61.5
AWB79601.1\|3698528_3698741_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	2.5e-12	61.5
AWB79602.1\|3698740_3699769_+\|integrase	integrase	C8CLF4	Xylella_phage	2.5e-113	61.7
AWB79603.1\|3700085_3701042_+	hypothetical protein	NA	NA	NA	NA
AWB79604.1\|3701184_3701850_-	7-cyano-7-deazaguanine synthase QueC	A0A2I7S903	Vibrio_phage	1.2e-23	36.4
AWB79605.1\|3701928_3702630_-	radical SAM protein	J9PV61	Bacillus_phage	3.1e-38	42.9
3707024:3707039	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4247401 : 4257408

Xanthomonas_virus(50.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB80048.1\|4247401_4248652_-	hypothetical protein	A0A0H4IPB2	Stenotrophomonas_phage	1.8e-49	42.8
AWB80049.1\|4248721_4253440_-	carbohydrate-binding protein	C4ML20	Xanthomonas_virus	0.0e+00	51.3
AWB80050.1\|4253430_4253823_-	hypothetical protein	Q52PK9	Xanthomonas_phage	4.1e-24	43.5
AWB80051.1\|4253822_4254284_-	DUF1833 domain-containing protein	Q52PL0	Xanthomonas_phage	9.4e-36	43.8
AWB80052.1\|4254280_4254556_-	hypothetical protein	C4ML17	Xanthomonas_virus	7.8e-14	44.0
AWB80053.1\|4254636_4257408_-\|tail	phage tail tape measure protein	C4ML16	Xanthomonas_virus	1.4e-78	30.9

DBSCAN-SWA_8

4262205 : 4276218

Pseudomonas_phage(18.18%)

portal,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWB80794.1\|4262205_4263510_-	S49 family peptidase	Q75QM8	Wolbachia_phage	4.0e-39	38.9
AWB80061.1\|4263556_4265038_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	6.2e-105	47.8
AWB80062.1\|4265030_4265246_-	hypothetical protein	NA	NA	NA	NA
AWB80063.1\|4265247_4267308_-\|terminase	terminase	A5LH27	Enterobacteria_phage	3.1e-147	42.0
AWB80064.1\|4267309_4267813_-	DUF1441 domain-containing protein	A0A219Y9N2	Aeromonas_phage	1.2e-23	38.7
AWB80065.1\|4268005_4268293_-	hypothetical protein	NA	NA	NA	NA
AWB80066.1\|4268294_4268777_-	hypothetical protein	NA	NA	NA	NA
AWB80067.1\|4268773_4269229_-	hypothetical protein	K7ZPX3	Xanthomonas_citri_phage	1.1e-12	39.5
AWB80068.1\|4269225_4269714_-	lysozyme	D5LH07	Escherichia_phage	3.6e-70	81.9
AWB80069.1\|4269784_4270549_-	DNA adenine methylase	B7SYF3	Stenotrophomonas_phage	2.7e-80	59.9
AWB80070.1\|4271000_4271216_+	hypothetical protein	NA	NA	NA	NA
AWB80071.1\|4271239_4272022_-	hypothetical protein	NA	NA	NA	NA
AWB80072.1\|4272170_4273919_-	ATP-dependent helicase	A0A0U1UNQ7	Pseudomonas_phage	8.8e-268	77.6
AWB80795.1\|4273918_4274293_-	hypothetical protein	A0A0U1UNQ6	Pseudomonas_phage	2.2e-35	58.5
AWB80073.1\|4274349_4274895_-	hypothetical protein	NA	NA	NA	NA
AWB80074.1\|4275133_4275928_-	DNA-binding protein	A0A1W6JP13	Morganella_phage	5.4e-23	48.1
AWB80796.1\|4275924_4276218_-	hypothetical protein	H2DE79	Erwinia_phage	9.2e-29	61.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028899

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection