CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP022095	Mycobacterium avium subsp. paratuberculosis strain FDAARGOS_305 chromosome, complete genome	0 crisprs	cas3,DEDDh,DinG,csa3,cas4,WYL	0	0	1	0

1. CP022095

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	2101608 : 2108180	8	Bacillus_phage(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>CP022095|2101608:2108180|DBSCAN-SWA
CATGGCGCAGAAGGCATCCGGGCGGTATTACGCGGGAAAGCGGTGTTTGGTCACCGGCGCGGCCAGCGGCATCGGCCGCGCCACGGCACTGCGGCTCGCCGCCCACGGCGCCGAGCTCTATCTGACCGACCGGGACGGCGACGGCCTGCGGCTCACGGTCGAGGACGCCCGCGCCCTGGGCGCGTCGGTCCCCGAGCATCGCGCGCTGGACATCGCCGACTACGACCAGGTGGCCTCCTTCGCCGCCGACATTCATGCCGCCCACCCGCCGATGGACGTGGTGCTCAACATCGCCGGCGTGTCGGCCTGGGGCACCGTTGACCGGCTCACCCACGAACAGTGGCGCAAGATGATCGCCATCAACCTGATGGGTCCGATCCATGTCATCGAGACATTCGTCCCGCCCATGGTGGCCGCCGGGCGGGGCGGGCATCTGGCCAACGTGTCCTCGGCGGCCGGGCTGGTCGCGCTGCCCTGGCACGCCGCCTACAGCGCCAGCAAGTACGGGCTGCGGGGGCTGTCGGAGGTGCTGCGCTTCGACCTGGCCCGGCACCGCATCGGGGTGTCGGTGGTGGTGCCCGGCGCGGTGAACACCCCGCTGGTGAACACGGTGGAGATCGCCGGCGTGGACCGCGACGACCCCGACGTCGCCCGCTGGGTGCGGCGGTTCGCCGGCCATGCGGTGTCGCCGGAAAAGGCCGCCGACAAGATCCTGGCCGGGGTCGCCCGGAACCGGTACCTGATCTACACCTCGCCCGACATCCGGGCGCTGTACGCGTTCAAGAGGCTGGCGTGGTGGCCCTACAGCGTGGTGATGCGTCAGGTGAACGTGATCTTCACCCGCGCGCTGCGGCCCGCGCCGGCGACGCTAGTCCGGCATGACCAGCTCGAGACGCACCCCGAGCAACCGGACCGGCCGGTCGAGCTCGAATAGATCCAGCACGCGCAGCGCCGCGGCCACGATGACGTCGCGATCGGTGCTGGGCGCGTCGAGCTTGCGAATTTTGGTGCGGGTGTAGAAGGTGGCCGTGCGCACGGTCACCGCGACCCGGGTCACCACCCGGCCCGCCGTCAGCACCTCCGCCACCGCCTGATCGGCCAAATCCGTTACCGCCGTTTCCATTTCGGCGCGATCGGTGAGGTCCCGGGGAAACGTGACGACGTGGCTGCGCGAGCGCGGCACCCACGGTTGCGCGCTGACGTGGTCGTCGCCGCCACCCTTGGCGAGCAGCAGCAGCCACAACCCGGTGCGCGGCCCGAAGGTGGCCGTCAACAGTTCCGCGTCACTGTGGGCCAGTTGCCACACCGTCGTAATCTGAAGATCCGCAAGCTTTTTCGCGGTCTTGGGCCCCACACCCCACAGCGCGTCGACCGGACGGTCGGCCATCAGCGCCATCCAGTTCGCGTCGGTGAGCACGAAGACGCCGTCGGGTTTGGCAAAGCCGGTGGCGATCTTGGCGCGCTGCTTGTTGTCGCTGATGCCGACCGAACAGGTCAGCCCGGTTTCCGAGGAGATGACGCCGCGGATCTGTTCGGCGACCTCGATCGGGTCCGTCGCCGTCACCGCGAGGTAGGCCTCGTCCCAGCCCCACACCTCCACCGGATGCCCGAGGTCGCGCAGCAGCCCCATCACCTGGTCGGACGCGGCGTCGTAGGCGGCCGGGTCGGACGGCAGGAACGTCACCCCCGAGTCTGGGGGGCAGCGGCGGGCGGCGGCGCGCAGCGGCATGCCCGCGCGGACGCCGAATTCGCGTGCCTCGTAGGAGGCGCAGGTGACGACCTTGCGCGGTTCGTTCGGGTCGCCGTTGCCGCCGACGATGACGGGCAGGCCGGCCAGTTCGGGACGGCGCCGCAACTCGACCGACGCCAGGAACTGGTCGAGGTCGACGTGCAGCACCCAGCGGGGGCTCATCAGTTACCGCACAGCTTGCGCGCCAGGCTTTCCCACGCGTCGCCCAACGTCTGCAGGGTGTGGCCGTGGTCGCTGATCTGGTGGTGCACATAGTCGGCGTCGAGCAGCGCCAGCAGCGCGTCGGCCTGGGCGTCGAGGTCGCCGGTGGTGTGCGCCGCGGCCAGCAGCACCCGCACGTGGCGGCGCAGCACGGCGGACGGCGGGCCGTAGCGGGTCCGCGGGTCGCGGTTGGCCGCCGACAACAGTGCGTGGTGGGTGTGGGCGAAGCGCAACCGCTCCCGGCCGAAGGCCACCAGCCGATCCAGCGGCGGCGCATCGGGCCCCAGCGGCGGCGGACCGAACAGGAACGCCTGCTGGATGGCGCGTTCGTCCTCGTCCAGCAGCACCATCATCAGACCCGCCCGGCTGCCGAACCGGCGGAACAAGGTGCCCTTGCCGACGCCGGCGGCCGCGGCGACGTCGTCCATCGTGACGGCGTCGGCCCCGCGCTCGGCGACGAGGCGGCGAGCCGCATCCAGCAGGAGTGCGCGATTGCGGGCGGCGTCGCCGCGTTCCGGCGCGGGAACCCGCGGATCGCAGAACCGCAGTTGACCCCGCTGCTCGACACCGCTCACTCCTGCACTTTAACGCTGCCGGAATAAAACGGACCATAGTCCGGTTGGCCCGTGCGAGGATGGACACCAACAACCGAAGGGAACTGGCGAATCGTGGCAATCAAAATCTTGGCATTAGTGGGAAGCCTGCGCTCGGCGTCGATCAACCGCCAGATCGCGGAGCTGGCGAGCGCTGTCGCCGGCGAGGACGTCGTCGTCACCGTCTTCGAGGGGCTCGGCGAGCTGCCGTTCTACAACGAGGAGATCGACGACGCGATGACCAGCGACGCGCCGCCGCTGGCCCCGGTGGCCGCGCTGCGCGCCGCGGCGGCCGACGCCGACGCCGCGCTGGTGGTCACCCCCGAGTACAACGGCAGCATCCCGGCGGTCATCAAGAACGCGATCGACTGGTTGTCCCGCCCGTTCGGCGACGGCGCGCTGAAGGGCAAGCCGCTGGCCGTCATCGGGGGGTCTTTCGGCCAGTACGGGGGAGTGTGGGCGCACGACGAGACCCGCAAGTCCTTCGGGATCGCCGGGGCGCGGGTGGTCGAGTCGATCAAGCTGTCCGTGCCGTTCAAGACGCTGGCCGGCAAGGCGCCCGCCGAGCATGCCGAACTGTCGGCGAACGTGCGCGACGTGGTCGGCAAGCTGGCCGCCGAGGTCGGCTGATTGGCGGAAATCGACAACCCGGTCACCGGGCGACCAGCGCGGTTGTGAGACCGGCATGGCAGAAGCCGCCAGCTTCGGCTGGCGGCTTTGCTGGCTGTGGGTGGGCCCGGCGCGGTTCGCGGCGTGATCCGGGCCTTGTCGGTGCCCGCTGCTATACCGATGGGCAGAGACGGCGTCCCCCCGGCGTGTGATCTGCGACACGCCGGGGCGGGTGTCCGAATTTGTCCGACACAGGCCTTACGACCAGGGAATTTCAAAATTGTCATTCAGAACATCTTGTATCTCGACATCTAGTGAGCCACTAGGTGTAGTGTTTCGAGCACCGGCAGATCCCAGGACCACCGAGCCCCGCGGGCGCGGCGGAACCCCCGAAATCGGCGCCGAGTTGTCGAAGACAGGCCTTCGGCACCCGACCGCCGCAGGACGGGAATCCGGGGGCCTGCCGGATCGCTGAAGGTAGCAAACAAGCAGTCCAAAAGTAGTTGCCAGTCCGTTGGGTTCCCCCTCTTCCGCGAAGGAGCGGCATGCGATGACCATCACCGTGTACACCAAGCCGGCATGCGTGCAGTGCAGCGCCACCTACAAGGCGCTGGACAAGCACGGCATCGCCTACGAGAAGGTCGACATCACGCTCGACCCCGAGGCGCGTGACTACGTGATGGCGCTGGGATACCTGCAGGCTCCCGTCGTGGTGGCCGGAAGCGACCACTGGTCGGGTTTCCGGCCCGATCGGATCAAGGCGCTGGCCGGGGCGGAACTGAGCGCCTAGGCAACAGAGCGGCAAGACGTCAGGTAAGGAGGTTGCGCTGCCATGGACAGCACGGGACGCAACCTGGTCTATTTCTCCTCGGTCTCGGAGAACACCCACCGCTTCGTGCAGAAGCTGGGCATCCCGGCCATCCGGATACCGTTGCACGGGCGGATCGAGGTGGACCACCCGTACGTCCTGCTGCTGCCCACCTACGGCGGCGGGCGGGCCACTCCCGACCTCAACGCCGGGGGCTATGTCCCCAAACAGGTCATCGCCTTTTTGAACAATGAGCACAACCGTTCGTTGATCCGCGGCGTCATCGCCGCGGGCAACAACAACTTCGGCGCCGAATTCGCCTACGCGGGAAACGTGGTCTCGCGCAAGTGCGGCGTTCCGTACCTCTACCGCTTCGAACTGATGGGAACCCAGGACGACGTGGACGCCGTCCGAGCGGGCTTAGCTGAATTTTGGAAGGAACAGACGTGTCACCAACCGTCGCTGCAGAGCCTGTAACCGCCGGCGCTCATGGCTTGCCCGACGAAACGGACTACCATGCGCTGAACGCGATGCTGAACCTGTACGACGCGGACGGCAAGATCCAGTTCGACAAGGACGTCCTCGCCGCGCGCCAGTACTTTCTGCAGCACGTCAACCAGAACACCGTCTTCTTTCACAATCAGGACGAGAAACTCGACTACCTGATCCGCGAAAACTATTACGAGCGTGAGGTTCTCGACCAGTACTCGCGCAACTTCGTCAAGTCGTTGCTGGACCGCGCCTACGCCAAGAAGTTCCGCTTCCCGACCTTTCTCGGCGCCTTCAAGTACTACACCTCCTACACGCTGAAGACGTTCGACGGGAAGCGCTATCTGGAGCGCTTCGAGGACCGCGTGGTCATGGTGGCGCTCACGCTGGCGGCCGGCGACACCGGGCTGGCCGAGAAGCTGGTCGACGAGATCATCGAGGGCCGTTTCCAGCCGGCCACGCCGACGTTTTTGAACTCCGGCAAGAAGCAGCGCGGCGAGCCGGTGAGCTGCTTTCTGCTGCGCATCGAGGACAACATGGAGTCCATCGGGCGTTCGATCAACTCCGCGCTGCAGCTGTCCAAGCGCGGCGGCGGAGTCGCGTTGCTGCTGACCAACATTCGCGAGCACGGCGCGCCGATCAAGAACATCGAGAACCAGTCCTCGGGCGTCATCCCCATCATGAAGCTGCTGGAGGACTCGTTCTCCTACGCCAATCAGCTCGGGGCGCGCCAGGGGGCCGGCGCGGTGTACCTGCACGCCCATCACCCCGACATCTACCGCTTCCTGGACACCAAGCGGGAGAACGCCGACGAGAAGATCCGGATCAAGACGCTGAGCCTGGGCGTGGTGATCCCCGACATCACCTTCGAGCTGGCCAAGAAGAACGAGGACATGTACCTGTTCTCGCCGTACGACGTGGAACGCGTCTACGGGCTGCCGTTCGCCGACATCTCGGTGACCGAGAAGTACTACGAGATGGTCGACGACGCCCGCATCCGCAAGACCAAGATCAAGGCGCGGGAGTTCTTCCAGACGCTGGCCGAGCTGCAGTTCGAGTCGGGCTACCCGTACATCATGTTCGAGGACACGGTGAACCGGGCCAATCCCATCGACGGCAAGATCACCCACTCCAACCTGTGCTCGGAGATCCTGCAGGTCTCCACGCCGTCGTTGTTCAACGACGACCTGTCGTATGCCAAAGTGGGCAAGGACATTTCGTGCAACCTGGGTTCGCTGAACATCGCCAAGACGATGGACTCGCCCGACTTCGCCCAGACCATCGAGGTGGCCATCCGGGCGCTGACCGCCGTTAGCGACCAGACGCACATCACCTCGGTGCCCTCAATCGAGCAGGGCAACAACGATTCTCACGCGATCGGGCTCGGGCAGATGAACCTGCACGGGTACCTGGCCCGCGAGGGCATCTTCTACGGCTCCGAAGAGGGCATCGACTTCACCAACATCTACTTCTACACGGTGCTCTATCACGCGCTGCGCGCGTCGAACCGCATCGCGATCGAACGCGGCACGCACTTCAAGGGTTTCGAGCGCTCCAAGTACGCGTCGGGGGAGTTCTTCGACAAGTACACCGAGCAGGTGTGGGAGCCGGCGACCGAGAAGGTGCGCCAACTCTTCGCCGATGCCGGCATCCGCATCCCCACCCAGGACGACTGGAAGCGGCTGAAGGAGTCGGTGCAGGCGCACGGCATCTACAACCAGAACCTGCAGGCGGTGCCGCCGACCGGGTCGATCTCCTACATCAACCACTCGACGAGCTCGATCCACCCGATCGTGTCGAAGGTCGAGATCCGCAAGGAGGGCAAGATCGGGCGGGTCTACTACCCGGCGCCCTACATGACCAACGACAACCTGGAGTACTACCAGGACGCCTACGAGATCGGTTACGAGAAGATCATCGACACCTACGCCGCGGCCACCCAGCACGTCGACCAGGGGCTGAGCCTGACGCTGTTCTTCAAGGACACCGCCACCACCCGCGACGTCAACAAGGCGCAGATCTACGCCTGGCGCAAGGGCATCAAGACGCTCTACTACATCCGGTTGCGCCAGATGGCGCTGGAGGGAACCGAGGTCGAGGGCTGCGTGTCCTGCATGCTGTGA

Protein sequences of DBSCAN-SWA_1

>CP022095|2101608:2108180|2104226_2104781_+|AVJ54075.1|DBSCAN-SWA
MAIKILALVGSLRSASINRQIAELASAVAGEDVVVTVFEGLGELPFYNEEIDDAMTSDAPPLAPVAALRAAAADADAALVVTPEYNGSIPAVIKNAIDWLSRPFGDGALKGKPLAVIGGSFGQYGGVWAHDETRKSFGIAGARVVESIKLSVPFKTLAGKAPAEHAELSANVRDVVGKLAAEVG
>CP022095|2101608:2108180|2105592_2106045_+|ASE14154.1|DBSCAN-SWA
MDSTGRNLVYFSSVSENTHRFVQKLGIPAIRIPLHGRIEVDHPYVLLLPTYGGGRATPDLNAGGYVPKQVIAFLNNEHNRSLIRGVIAAGNNNFGAEFAYAGNVVSRKCGVPYLYRFELMGTQDDVDAVRAGLAEFWKEQTCHQPSLQSL
>CP022095|2101608:2108180|2105310_2105550_+|ASE14153.1|DBSCAN-SWA
MTITVYTKPACVQCSATYKALDKHGIAYEKVDITLDPEARDYVMALGYLQAPVVVAGSDHWSGFRPDRIKALAGAELSA
>CP022095|2101608:2108180|2102475_2103519_-|ASE14150.1|DBSCAN-SWA
MSPRWVLHVDLDQFLASVELRRRPELAGLPVIVGGNGDPNEPRKVVTCASYEAREFGVRAGMPLRAAARRCPPDSGVTFLPSDPAAYDAASDQVMGLLRDLGHPVEVWGWDEAYLAVTATDPIEVAEQIRGVISSETGLTCSVGISDNKQRAKIATGFAKPDGVFVLTDANWMALMADRPVDALWGVGPKTAKKLADLQITTVWQLAHSDAELLTATFGPRTGLWLLLLAKGGGDDHVSAQPWVPRSRSHVVTFPRDLTDRAEMETAVTDLADQAVAEVLTAGRVVTRVAVTVRTATFYTRTKIRKLDAPSTDRDVIVAAALRVLDLFELDRPVRLLGVRLELVMPD
>CP022095|2101608:2108180|2103518_2104133_-|ASE14151.1|DBSCAN-SWA
MSGVEQRGQLRFCDPRVPAPERGDAARNRALLLDAARRLVAERGADAVTMDDVAAAAGVGKGTLFRRFGSRAGLMMVLLDEDERAIQQAFLFGPPPLGPDAPPLDRLVAFGRERLRFAHTHHALLSAANRDPRTRYGPPSAVLRRHVRVLLAAAHTTGDLDAQADALLALLDADYVHHQISDHGHTLQTLGDAWESLARKLCGN
>CP022095|2101608:2108180|2104968_2105235_+|ASE14152.1|DBSCAN-SWA
MICDTPGRVSEFVRHRPYDQGISKLSFRTSCISTSSEPLGVVFRAPADPRTTEPRGRGGTPEIGAELSKTGLRHPTAAGRESGGLPDR
>CP022095|2101608:2108180|2106014_2108180_+|ASE14155.1|DBSCAN-SWA
MSPTVAAEPVTAGAHGLPDETDYHALNAMLNLYDADGKIQFDKDVLAARQYFLQHVNQNTVFFHNQDEKLDYLIRENYYEREVLDQYSRNFVKSLLDRAYAKKFRFPTFLGAFKYYTSYTLKTFDGKRYLERFEDRVVMVALTLAAGDTGLAEKLVDEIIEGRFQPATPTFLNSGKKQRGEPVSCFLLRIEDNMESIGRSINSALQLSKRGGGVALLLTNIREHGAPIKNIENQSSGVIPIMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIYRFLDTKRENADEKIRIKTLSLGVVIPDITFELAKKNEDMYLFSPYDVERVYGLPFADISVTEKYYEMVDDARIRKTKIKAREFFQTLAELQFESGYPYIMFEDTVNRANPIDGKITHSNLCSEILQVSTPSLFNDDLSYAKVGKDISCNLGSLNIAKTMDSPDFAQTIEVAIRALTAVSDQTHITSVPSIEQGNNDSHAIGLGQMNLHGYLAREGIFYGSEEGIDFTNIYFYTVLYHALRASNRIAIERGTHFKGFERSKYASGEFFDKYTEQVWEPATEKVRQLFADAGIRIPTQDDWKRLKESVQAHGIYNQNLQAVPPTGSISYINHSTSSIHPIVSKVEIRKEGKIGRVYYPAPYMTNDNLEYYQDAYEIGYEKIIDTYAAATQHVDQGLSLTLFFKDTATTRDVNKAQIYAWRKGIKTLYYIRLRQMALEGTEVEGCVSCML
>CP022095|2101608:2108180|2101608_2102541_+|ASE14149.1|DBSCAN-SWA
MAQKASGRYYAGKRCLVTGAASGIGRATALRLAAHGAELYLTDRDGDGLRLTVEDARALGASVPEHRALDIADYDQVASFAADIHAAHPPMDVVLNIAGVSAWGTVDRLTHEQWRKMIAINLMGPIHVIETFVPPMVAAGRGGHLANVSSAAGLVALPWHAAYSASKYGLRGLSEVLRFDLARHRIGVSVVVPGAVNTPLVNTVEIAGVDRDDPDVARWVRRFAGHAVSPEKAADKILAGVARNRYLIYTSPDIRALYAFKRLAWWPYSVVMRQVNVIFTRALRPAPATLVRHDQLETHPEQPDRPVELE

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ASE14149.1|2101608_2102541_+	short chain dehydrogenase	W8CYX9	Bacillus_phage	5.9e-05	35.9
ASE14150.1|2102475_2103519_-	DNA polymerase IV	F1C5A5	Cronobacter_phage	1.1e-18	27.9
ASE14151.1|2103518_2104133_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AVJ54075.1|2104226_2104781_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	5.4e-06	33.6
ASE14152.1|2104968_2105235_+	hypothetical protein	NA	NA	NA	NA
ASE14153.1|2105310_2105550_+	NrdH-redoxin	V5UN81	Mycobacterium_phage	2.0e-21	64.5
ASE14154.1|2105592_2106045_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	1.7e-13	37.7
ASE14155.1|2106014_2108180_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	5.7e-208	51.6