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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP022056 Staphylococcus saprophyticus strain FDAARGOS_336 chromosome, complete genome 0 crisprs csa3,RT,WYL,DEDDh,cas3,DinG 0 0 204 0
CP022057 Staphylococcus saprophyticus strain FDAARGOS_336 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
CP022055 Staphylococcus saprophyticus strain FDAARGOS_336 plasmid unnamed1, complete sequence 0 crisprs csa3 0 0 1 0

Results visualization

1. CP022056
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 14363 9 Catovirus(14.29%) NA NA
DBSCAN-SWA_2 17678 : 25228 9 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_3 32940 : 33810 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_4 40904 : 50187 9 Indivirus(25.0%) NA NA
DBSCAN-SWA_5 60960 : 62834 2 uncultured_virus(50.0%) NA NA
DBSCAN-SWA_6 75266 : 76298 1 Acanthamoeba_polyphaga_mimivirus(100.0%) NA NA
DBSCAN-SWA_7 82576 : 90599 6 Klosneuvirus(25.0%) NA NA
DBSCAN-SWA_8 98061 : 98784 1 Cedratvirus(100.0%) NA NA
DBSCAN-SWA_9 124992 : 128682 4 Cafeteria_roenbergensis_virus(50.0%) NA NA
DBSCAN-SWA_10 142596 : 143253 1 Elephant_endotheliotropic_herpesvirus(100.0%) NA NA
DBSCAN-SWA_11 148404 : 149817 1 Burkholderia_virus(100.0%) NA NA
DBSCAN-SWA_12 161397 : 162060 1 Enterococcus_phage(100.0%) NA NA
DBSCAN-SWA_13 184490 : 185273 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_14 189590 : 190388 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_15 212056 : 215337 3 Catovirus(50.0%) NA NA
DBSCAN-SWA_16 218727 : 219918 1 Emiliania_huxleyi_virus(100.0%) NA NA
DBSCAN-SWA_17 223083 : 234069 6 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_18 238134 : 242993 8 Bacillus_virus(50.0%) tRNA NA
DBSCAN-SWA_19 248674 : 251137 1 Enterobacteria_phage(100.0%) protease NA
DBSCAN-SWA_20 256179 : 257559 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_21 269556 : 279814 9 Catovirus(20.0%) tRNA NA
DBSCAN-SWA_22 289000 : 293713 5 Hokovirus(50.0%) NA NA
DBSCAN-SWA_23 297671 : 300794 2 Klosneuvirus(50.0%) tRNA NA
DBSCAN-SWA_24 304463 : 305081 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_25 313612 : 315915 2 Streptococcus_virus(50.0%) NA NA
DBSCAN-SWA_26 330059 : 334795 5 Ostreococcus_tauri_virus(33.33%) NA NA
DBSCAN-SWA_27 345992 : 348745 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_28 352771 : 352972 1 Lactococcus_phage(100.0%) NA NA
DBSCAN-SWA_29 361545 : 378036 21 uncultured_Caudovirales_phage(30.77%) terminase,integrase attL 359485:359500|attR 375005:375020
DBSCAN-SWA_30 386694 : 389619 3 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_31 398185 : 413493 21 uncultured_Caudovirales_phage(33.33%) protease NA
DBSCAN-SWA_32 423572 : 433539 9 Staphylococcus_phage(75.0%) NA NA
DBSCAN-SWA_33 437280 : 439092 2 Freshwater_phage(50.0%) NA NA
DBSCAN-SWA_34 449364 : 451931 2 Gordonia_phage(50.0%) NA NA
DBSCAN-SWA_35 467869 : 469396 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_36 475084 : 475918 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_37 483047 : 483887 1 Gordonia_phage(100.0%) NA NA
DBSCAN-SWA_38 494122 : 503172 5 Bacillus_virus(50.0%) tRNA NA
DBSCAN-SWA_39 509411 : 513692 3 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_40 517060 : 522943 5 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_41 532646 : 536047 4 Organic_Lake_phycodnavirus(50.0%) transposase NA
DBSCAN-SWA_42 541325 : 555449 11 Bacillus_phage(25.0%) NA NA
DBSCAN-SWA_43 561708 : 563722 3 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_44 569494 : 571504 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_45 588818 : 590192 1 Organic_Lake_phycodnavirus(100.0%) NA NA
DBSCAN-SWA_46 604513 : 605752 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_47 630762 : 637798 6 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_48 645092 : 651163 3 Herpes_simplex_virus(50.0%) NA NA
DBSCAN-SWA_49 656541 : 658262 2 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_50 673421 : 674150 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_51 689895 : 693356 3 Enterococcus_phage(33.33%) NA NA
DBSCAN-SWA_52 699550 : 700363 1 Ostreococcus_lucimarinus_virus(100.0%) NA NA
DBSCAN-SWA_53 715194 : 715545 1 Brochothrix_phage(100.0%) NA NA
DBSCAN-SWA_54 720837 : 729824 6 Enterococcus_phage(33.33%) NA NA
DBSCAN-SWA_55 736966 : 738280 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_56 742593 : 750604 6 Prochlorococcus_phage(33.33%) holin NA
DBSCAN-SWA_57 758208 : 762029 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_58 765922 : 772251 6 Anomala_cuprea_entomopoxvirus(25.0%) transposase NA
DBSCAN-SWA_59 779697 : 781185 2 Salisaeta_icosahedral_phage(50.0%) NA NA
DBSCAN-SWA_60 784850 : 786968 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_61 797625 : 798300 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_62 802886 : 804071 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_63 827029 : 827761 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_64 834378 : 836791 2 Pandoravirus(50.0%) NA NA
DBSCAN-SWA_65 851391 : 852081 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_66 861667 : 862450 1 Staphylococcus_phage(100.0%) protease NA
DBSCAN-SWA_67 866969 : 882780 14 Staphylococcus_phage(25.0%) NA NA
DBSCAN-SWA_68 905665 : 908315 3 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_69 913675 : 914107 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_70 918280 : 924024 3 Yellowstone_lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_71 938045 : 939383 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_72 943544 : 948223 4 Catovirus(50.0%) NA NA
DBSCAN-SWA_73 954668 : 955739 1 Moumouvirus(100.0%) NA NA
DBSCAN-SWA_74 971289 : 974827 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_75 1009122 : 1009827 1 Moumouvirus(100.0%) NA NA
DBSCAN-SWA_76 1015411 : 1016416 1 Pacmanvirus(100.0%) NA NA
DBSCAN-SWA_77 1026648 : 1027467 1 Hirudovirus(100.0%) NA NA
DBSCAN-SWA_78 1032169 : 1032820 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_79 1040864 : 1042049 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_80 1048490 : 1049231 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_81 1052341 : 1054117 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_82 1070653 : 1071022 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_83 1099318 : 1099894 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_84 1105520 : 1106300 1 Trichoplusia_ni_ascovirus(100.0%) NA NA
DBSCAN-SWA_85 1116587 : 1117619 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_86 1131080 : 1133630 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_87 1137351 : 1138575 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_88 1155185 : 1156085 1 Amsacta_moorei_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_89 1169861 : 1170743 1 Diadromus_pulchellus_ascovirus(100.0%) NA NA
DBSCAN-SWA_90 1174383 : 1174605 1 Macacine_betaherpesvirus(100.0%) NA NA
DBSCAN-SWA_91 1179385 : 1180030 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_92 1197570 : 1200566 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_93 1214034 : 1214781 1 Anomala_cuprea_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_94 1222283 : 1223285 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_95 1226444 : 1227050 1 Pithovirus(100.0%) NA NA
DBSCAN-SWA_96 1240868 : 1246965 4 Leptospira_phage(50.0%) NA NA
DBSCAN-SWA_97 1251401 : 1252736 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_98 1268396 : 1270066 2 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_99 1277256 : 1278831 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_100 1288697 : 1289660 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_101 1304616 : 1305522 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_102 1314931 : 1316737 1 Paramecium_bursaria_Chlorella_virus(100.0%) NA NA
DBSCAN-SWA_103 1330686 : 1334247 4 Clostridium_phage(50.0%) NA NA
DBSCAN-SWA_104 1343378 : 1344989 1 Only_Syngen_Nebraska_virus(100.0%) NA NA
DBSCAN-SWA_105 1352268 : 1360056 9 Bacillus_virus(25.0%) NA NA
DBSCAN-SWA_106 1370068 : 1370488 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_107 1375900 : 1376548 1 Tunisvirus(100.0%) NA NA
DBSCAN-SWA_108 1383948 : 1385469 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_109 1390107 : 1393442 5 Clostridium_botulinum_C_phage(50.0%) NA NA
DBSCAN-SWA_110 1406873 : 1411869 4 Micromonas_sp._RCC1109_virus(50.0%) NA NA
DBSCAN-SWA_111 1415684 : 1421330 4 Moraxella_phage(33.33%) tRNA NA
DBSCAN-SWA_112 1424857 : 1428100 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_113 1435411 : 1451907 23 Staphylococcus_phage(56.25%) terminase,protease,integrase attL 1437367:1437386|attR 1453677:1453696
DBSCAN-SWA_114 1460386 : 1461259 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_115 1466807 : 1467212 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_116 1471418 : 1473190 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_117 1477135 : 1488122 10 Bacillus_virus(40.0%) NA NA
DBSCAN-SWA_118 1494736 : 1499769 5 Streptococcus_phage(66.67%) NA NA
DBSCAN-SWA_119 1503497 : 1504145 1 Bacillus_phage(100.0%) transposase NA
DBSCAN-SWA_120 1508373 : 1509003 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_121 1523840 : 1525577 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_122 1542786 : 1543509 1 Planktothrix_phage(100.0%) NA NA
DBSCAN-SWA_123 1548797 : 1549625 1 Bodo_saltans_virus(100.0%) NA NA
DBSCAN-SWA_124 1567804 : 1568542 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_125 1576737 : 1612498 34 Staphylococcus_phage(96.15%) tRNA NA
DBSCAN-SWA_126 1622845 : 1628093 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_127 1636477 : 1638187 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_128 1642006 : 1644835 2 Serratia_phage(50.0%) tRNA,protease NA
DBSCAN-SWA_129 1648705 : 1652904 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_130 1657616 : 1662078 4 Faustovirus(50.0%) tRNA NA
DBSCAN-SWA_131 1674530 : 1677734 1 Streptomyces_phage(100.0%) NA NA
DBSCAN-SWA_132 1682412 : 1684173 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_133 1687421 : 1695221 5 Bacillus_phage(40.0%) NA NA
DBSCAN-SWA_134 1699264 : 1710594 10 Brevibacillus_phage(20.0%) tRNA,protease NA
DBSCAN-SWA_135 1720505 : 1723136 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_136 1734238 : 1770925 31 uncultured_Mediterranean_phage(17.65%) tRNA,protease NA
DBSCAN-SWA_137 1784025 : 1796384 10 Bacillus_phage(20.0%) NA NA
DBSCAN-SWA_138 1801552 : 1802500 1 Erwinia_phage(100.0%) NA NA
DBSCAN-SWA_139 1805678 : 1819586 13 Catovirus(28.57%) tRNA NA
DBSCAN-SWA_140 1825755 : 1826379 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_141 1831922 : 1834740 2 Prochlorococcus_phage(100.0%) NA NA
DBSCAN-SWA_142 1841895 : 1844348 3 Indivirus(100.0%) NA NA
DBSCAN-SWA_143 1849090 : 1850512 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_144 1857190 : 1858600 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_145 1862886 : 1864371 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_146 1869640 : 1879608 11 uncultured_Mediterranean_phage(28.57%) NA NA
DBSCAN-SWA_147 1888565 : 1892143 5 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_148 1900955 : 1908011 5 unidentified_phage(25.0%) tRNA NA
DBSCAN-SWA_149 1911615 : 1912242 1 Paenibacillus_phage(100.0%) NA NA
DBSCAN-SWA_150 1922483 : 1938708 21 Staphylococcus_phage(37.5%) NA NA
DBSCAN-SWA_151 1950775 : 1954799 6 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_152 1958398 : 1964672 7 Vibrio_phage(25.0%) NA NA
DBSCAN-SWA_153 1972231 : 1974883 2 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_154 1979388 : 1982788 3 Indivirus(50.0%) NA NA
DBSCAN-SWA_155 1992540 : 1994888 3 Acinetobacter_phage(100.0%) NA NA
DBSCAN-SWA_156 2002936 : 2004199 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_157 2008225 : 2009716 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_158 2020793 : 2025187 2 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_159 2030250 : 2031894 1 Vibrio_phage(100.0%) NA NA
DBSCAN-SWA_160 2035621 : 2036752 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_161 2041652 : 2047227 6 Phage_Wrath(25.0%) NA NA
DBSCAN-SWA_162 2057904 : 2062172 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_163 2067829 : 2068303 1 Canarypox_virus(100.0%) NA NA
DBSCAN-SWA_164 2074330 : 2081749 5 Acanthocystis_turfacea_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_165 2086900 : 2087527 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_166 2093813 : 2094863 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_167 2099346 : 2105105 4 Bacillus_virus(33.33%) NA NA
DBSCAN-SWA_168 2115555 : 2124573 6 Bodo_saltans_virus(50.0%) NA NA
DBSCAN-SWA_169 2129109 : 2129874 1 Flavobacterium_phage(100.0%) NA NA
DBSCAN-SWA_170 2134327 : 2145292 9 Erwinia_phage(20.0%) tRNA,protease NA
DBSCAN-SWA_171 2163459 : 2165633 3 Acanthamoeba_polyphaga_moumouvirus(33.33%) NA NA
DBSCAN-SWA_172 2179135 : 2181190 1 Acanthamoeba_polyphaga_moumouvirus(100.0%) NA NA
DBSCAN-SWA_173 2184339 : 2185272 1 Prochlorococcus_phage(100.0%) tRNA NA
DBSCAN-SWA_174 2189796 : 2196732 8 Methanothermobacter_phage(33.33%) NA NA
DBSCAN-SWA_175 2200688 : 2205303 4 Halovirus(33.33%) NA NA
DBSCAN-SWA_176 2209235 : 2211986 1 Klosneuvirus(100.0%) tRNA NA
DBSCAN-SWA_177 2235449 : 2245444 12 uncultured_Caudovirales_phage(42.86%) transposase,integrase attL 2240469:2240490|attR 2243873:2243894
DBSCAN-SWA_178 2252029 : 2256496 3 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_179 2261343 : 2262402 1 Orpheovirus(100.0%) tRNA NA
DBSCAN-SWA_180 2267081 : 2269987 5 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_181 2283921 : 2285769 1 Erysipelothrix_phage(100.0%) NA NA
DBSCAN-SWA_182 2294076 : 2302894 9 Mycoplasma_phage(25.0%) NA NA
DBSCAN-SWA_183 2313295 : 2314465 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_184 2317568 : 2332175 14 Prochlorococcus_phage(22.22%) NA NA
DBSCAN-SWA_185 2340935 : 2342594 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_186 2345685 : 2350077 1 Staphylococcus_virus(100.0%) NA NA
DBSCAN-SWA_187 2369093 : 2373980 3 Pithovirus(33.33%) NA NA
DBSCAN-SWA_188 2393738 : 2395547 1 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_189 2401315 : 2403332 2 Organic_Lake_phycodnavirus(50.0%) NA NA
DBSCAN-SWA_190 2410476 : 2415306 2 Cronobacter_phage(50.0%) NA NA
DBSCAN-SWA_191 2420986 : 2424646 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_192 2434917 : 2441577 6 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_193 2451775 : 2455301 3 Mycoplasma_phage(50.0%) NA NA
DBSCAN-SWA_194 2459490 : 2462165 2 Pseudomonas_phage(50.0%) NA NA
DBSCAN-SWA_195 2469172 : 2470021 1 Kurlavirus(100.0%) NA NA
DBSCAN-SWA_196 2475153 : 2478721 3 environmental_halophage(50.0%) NA NA
DBSCAN-SWA_197 2483536 : 2487140 6 Planktothrix_phage(50.0%) NA NA
DBSCAN-SWA_198 2505797 : 2507453 3 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_199 2511633 : 2517983 7 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_200 2527368 : 2534553 6 Streptococcus_phage(40.0%) NA NA
DBSCAN-SWA_201 2538644 : 2541482 1 uncultured_Mediterranean_phage(100.0%) NA NA
DBSCAN-SWA_202 2545073 : 2546027 1 Staphylococcus_phage(100.0%) NA NA
DBSCAN-SWA_203 2551872 : 2554905 3 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_204 2567382 : 2577894 9 uncultured_Caudovirales_phage(57.14%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP022055
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 5227 : 12471 9 Staphylococcus_phage(33.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage