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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP024118 Bacillus cytotoxicus strain CH_2 plasmid pCh2_83, complete sequence 0 crisprs TnsE_C 0 0 1 0
CP024117 Bacillus cytotoxicus strain CH_2 plasmid pCh2_53, complete sequence 0 crisprs NA 0 0 1 0
CP024116 Bacillus cytotoxicus strain CH_2 chromosome, complete genome 4 crisprs cas3,csa3,DinG,cas2,cas1,cas9,cas14j,cas4,cas7,cas6,DEDDh,WYL 4 15 11 1

Results visualization

1. CP024118
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 35017 : 42271 8 Bacillus_phage(33.33%) integrase attL 31941:31956|attR 48149:48164
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP024117
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 22572 : 29189 9 Bacillus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP024116
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024116_1 1597627-1597755 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024116_2 2100236-2100929 TypeII NA
10 spacers
cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024116_3 2228617-2229103 Unclear I-A
7 spacers
cas2,cas4,cas7,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024116_4 2238772-2239387 Unclear I-A
9 spacers
cas6,cas7,cas4,cas2

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP024116_3 3.6|2228973|37|CP024116|CRISPRCasFinder,CRT 2228973-2229009 37 CP024116.1 811958-811994 0 1.0
CP024116_3 3.12|2228982|37|CP024116|PILER-CR 2228982-2229018 37 CP024116.1 811958-811994 0 1.0
CP024116_4 4.7|2239192|36|CP024116|CRISPRCasFinder,CRT 2239192-2239227 36 CP024116.1 3185056-3185091 0 1.0
CP024116_4 4.15|2239193|36|CP024116|PILER-CR 2239193-2239228 36 CP024116.1 3185056-3185091 0 1.0

1. spacer 3.6|2228973|37|CP024116|CRISPRCasFinder,CRT matches to position: 811958-811994, mismatch: 0, identity: 1.0

tcttttaaaagctgtagtatttgtttttcgtattcga	CRISPR spacer
tcttttaaaagctgtagtatttgtttttcgtattcga	Protospacer
*************************************

2. spacer 3.12|2228982|37|CP024116|PILER-CR matches to position: 811958-811994, mismatch: 0, identity: 1.0

tcttttaaaagctgtagtatttgtttttcgtattcga	CRISPR spacer
tcttttaaaagctgtagtatttgtttttcgtattcga	Protospacer
*************************************

3. spacer 4.7|2239192|36|CP024116|CRISPRCasFinder,CRT matches to position: 3185056-3185091, mismatch: 0, identity: 1.0

tgtagcgaaccgttttatttagaagaattaactcat	CRISPR spacer
tgtagcgaaccgttttatttagaagaattaactcat	Protospacer
************************************

4. spacer 4.15|2239193|36|CP024116|PILER-CR matches to position: 3185056-3185091, mismatch: 0, identity: 1.0

tgtagcgaaccgttttatttagaagaattaactcat	CRISPR spacer
tgtagcgaaccgttttatttagaagaattaactcat	Protospacer
************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 NZ_AP014870 Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK6 12518-12546 0 1.0
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 NZ_CP010096 Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMBLin15, complete sequence 5323-5351 0 1.0
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 NZ_CP004882 Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMBLin15, complete sequence 5325-5353 1 0.966
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 NZ_CP011355 Bacillus thuringiensis strain YC-10 plasmid pYC10, complete sequence 2221-2249 1 0.966
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 NC_006945 Bacillus phage GIL16c, complete genome 5316-5344 1 0.966
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 AY701338 Bacillus thuringiensis phage GIL16c, complete genome 5316-5344 1 0.966
CP024116_2 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100733-2100762 30 EU408779 Bacillus phage AP50, complete genome 2485-2514 2 0.933
CP024116_2 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100733-2100762 30 NZ_CP004882 Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMBLin15, complete sequence 2435-2464 2 0.933
CP024116_2 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100733-2100762 30 NZ_CP053974 Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed5, complete sequence 10677-10706 2 0.933
CP024116_2 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100733-2100762 30 NZ_CP009346 Bacillus thuringiensis HD1002 plasmid 5, complete sequence 12464-12493 2 0.933
CP024116_2 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100733-2100762 30 NZ_CP010096 Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMBLin15, complete sequence 2433-2462 2 0.933
CP024116_2 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100733-2100762 30 NZ_CP045027 Bacillus thuringiensis strain JW-1 plasmid p5, complete sequence 12462-12491 2 0.933
CP024116_2 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100733-2100762 30 NC_005258 Bacillus phage Bam35c, complete genome 2443-2472 2 0.933
CP024116_2 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100733-2100762 30 AY257527 Bacillus thuringiensis bacteriophage Bam35c, complete genome 2443-2472 2 0.933
CP024116_2 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100733-2100762 30 AJ536073 Bacillus phage pGIL01, complete genome 2441-2470 2 0.933
CP024116_2 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100733-2100762 30 CP013282 Bacillus phage pGIL02, complete sequence 12464-12493 2 0.933
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 NZ_CP053974 Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed5, complete sequence 7661-7689 2 0.931
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 NZ_CP009346 Bacillus thuringiensis HD1002 plasmid 5, complete sequence 9437-9465 2 0.931
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 NZ_CP045027 Bacillus thuringiensis strain JW-1 plasmid p5, complete sequence 9435-9463 2 0.931
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 CP013282 Bacillus phage pGIL02, complete sequence 9437-9465 2 0.931
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 NC_005258 Bacillus phage Bam35c, complete genome 5471-5499 2 0.931
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 KC152966 Bacillus phage Emet putative gene regulator and hypothetical proteins genes, complete cds 1009-1037 2 0.931
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 KC152967 Bacillus phage Sole hypothetical protein, putative gene regulators, and hypothetical protein genes, complete cds 1045-1073 2 0.931
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 AY257527 Bacillus thuringiensis bacteriophage Bam35c, complete genome 5471-5499 2 0.931
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 AJ536073 Bacillus phage pGIL01, complete genome 5469-5497 2 0.931
CP024116_2 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100338-2100367 30 NC_048762 Bacillus phage vB_BtS_B83, complete genome 26059-26088 3 0.9
CP024116_2 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100338-2100367 30 NZ_CP020004 Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed2, complete sequence 17949-17978 3 0.9
CP024116_2 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100733-2100762 30 NZ_CP034552 Bacillus cereus ATCC 14579 plasmid unnamed, complete sequence 2356-2385 3 0.9
CP024116_2 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100733-2100762 30 NC_004721 Bacillus cereus ATCC 14579 plasmid pBClin15, complete sequence 2418-2447 3 0.9
CP024116_2 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100469-2100498 30 GU071094 Synechococcus phage S-SM1, complete genome 54124-54153 4 0.867
CP024116_2 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100338-2100367 30 NZ_CP014285 Bacillus thuringiensis strain Bt185 plasmid pBT1850055, complete sequence 27260-27289 5 0.833
CP024116_2 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100338-2100367 30 NC_004821 Bacillus prophage phBC6A52, complete genome 37850-37879 5 0.833
CP024116_2 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100338-2100367 30 NC_049968 Bacillus phage DK2, complete genome 22476-22505 5 0.833
CP024116_2 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100338-2100367 30 KX190832 Bacillus phage vB_BtS_BMBtp13, complete genome 23253-23282 5 0.833
CP024116_2 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100338-2100367 30 MK284528 Bacillus phage DK3, complete genome 23164-23193 5 0.833
CP024116_2 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100338-2100367 30 NZ_CP032612 Bacillus thuringiensis strain QZL38 plasmid p.4, complete sequence 34550-34579 5 0.833
CP024116_2 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100338-2100367 30 NC_018502 Bacillus thuringiensis HD-771 plasmid p05, complete sequence 5059-5088 5 0.833
CP024116_4 4.2|2238866|37|CP024116|CRISPRCasFinder,CRT 2238866-2238902 37 NZ_CP007513 Bacillus bombysepticus plasmid pBb, complete genome 248075-248111 5 0.865
CP024116_4 4.10|2238867|37|CP024116|PILER-CR 2238867-2238903 37 NZ_CP007513 Bacillus bombysepticus plasmid pBb, complete genome 248075-248111 5 0.865
CP024116_2 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100338-2100367 30 GU233956 Bacillus phage 11143, partial sequence 20685-20714 6 0.8
CP024116_2 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100469-2100498 30 NC_011738 Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence 213020-213049 6 0.8
CP024116_2 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100469-2100498 30 NC_007051 Staphylococcus phage 2638A, complete genome 13284-13313 6 0.8
CP024116_2 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100469-2100498 30 AY954954 Bacteriophage 2638A, complete genome 13284-13313 6 0.8
CP024116_2 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100469-2100498 30 NZ_CP034567 Vibrio parahaemolyticus strain D3112 plasmid p1, complete sequence 45690-45719 6 0.8
CP024116_2 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100469-2100498 30 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 675072-675101 6 0.8
CP024116_2 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100799-2100827 29 NC_022088 Bacillus phage Troll, complete genome 4906-4934 6 0.793
CP024116_2 2.10|2100864|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100864-2100893 30 NZ_CP053575 Citrobacter sp. TSA-1 plasmid unnamed2, complete sequence 7553-7582 6 0.8
CP024116_2 2.10|2100864|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100864-2100893 30 MG945606 UNVERIFIED: Microviridae sp. isolate 4483-1602, complete genome 1967-1996 6 0.8
CP024116_2 2.1|2100272|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100272-2100301 30 MN856040 Bacteriophage sp. isolate 317, complete genome 2411-2440 8 0.733
CP024116_2 2.3|2100404|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100404-2100432 29 NZ_CP050068 Klebsiella aerogenes strain 035 plasmid p35, complete sequence 377728-377756 8 0.724
CP024116_2 2.3|2100404|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100404-2100432 29 NZ_CP020848 Klebsiella variicola strain KPN1481 plasmid pKPN1481-1, complete sequence 153139-153167 8 0.724
CP024116_2 2.3|2100404|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100404-2100432 29 NZ_CP043927 Klebsiella quasipneumoniae subsp. quasipneumoniae strain M17277 plasmid p17277A_477, complete sequence 113729-113757 8 0.724
CP024116_2 2.3|2100404|29|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100404-2100432 29 NZ_CP021699 Klebsiella pneumoniae strain AR_0158 plasmid tig00000727, complete sequence 347755-347783 8 0.724
CP024116_2 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100469-2100498 30 KX827371 Staphylococcus phage SpT99F3, complete genome 30241-30270 8 0.733
CP024116_2 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100469-2100498 30 MK075002 Staphylococcus phage phiSP38-1, complete genome 32276-32305 8 0.733
CP024116_2 2.5|2100535|30|CP024116|PILER-CR,CRISPRCasFinder,CRT 2100535-2100564 30 MN047793 Xanthomonas phage Xoo-sp13, complete genome 181943-181972 8 0.733
CP024116_4 4.8|2239257|37|CP024116|CRISPRCasFinder,CRT 2239257-2239293 37 NC_025146 Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111 92131-92167 8 0.784
CP024116_4 4.16|2239258|37|CP024116|PILER-CR 2239258-2239294 37 NC_025146 Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111 92131-92167 8 0.784
CP024116_4 4.7|2239192|36|CP024116|CRISPRCasFinder,CRT 2239192-2239227 36 NZ_CP020750 Bacillus mycoides strain Gnyt1 plasmid unnamed7, complete sequence 37822-37857 9 0.75
CP024116_4 4.15|2239193|36|CP024116|PILER-CR 2239193-2239228 36 NZ_CP020750 Bacillus mycoides strain Gnyt1 plasmid unnamed7, complete sequence 37822-37857 9 0.75
CP024116_3 3.1|2228646|37|CP024116|CRISPRCasFinder,CRT 2228646-2228682 37 LC168164 Tenacibaculum phage pT24 DNA, complete genome 180412-180448 11 0.703

1. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014870 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK6) position: , mismatch: 0, identity: 1.0

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcgtcttcctctacttttggtttcggtgg	Protospacer
*****************************

2. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010096 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMBLin15, complete sequence) position: , mismatch: 0, identity: 1.0

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcgtcttcctctacttttggtttcggtgg	Protospacer
*****************************

3. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004882 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMBLin15, complete sequence) position: , mismatch: 1, identity: 0.966

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcgtcttcctctacttttggcttcggtgg	Protospacer
********************.********

4. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011355 (Bacillus thuringiensis strain YC-10 plasmid pYC10, complete sequence) position: , mismatch: 1, identity: 0.966

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcgtcttcctctacttttggcttcggtgg	Protospacer
********************.********

5. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NC_006945 (Bacillus phage GIL16c, complete genome) position: , mismatch: 1, identity: 0.966

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcgtcttcctctacttttggcttcggtgg	Protospacer
********************.********

6. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to AY701338 (Bacillus thuringiensis phage GIL16c, complete genome) position: , mismatch: 1, identity: 0.966

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcgtcttcctctacttttggcttcggtgg	Protospacer
********************.********

7. spacer 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to EU408779 (Bacillus phage AP50, complete genome) position: , mismatch: 2, identity: 0.933

ggtagcaatctaaagctatcatgtagtata	CRISPR spacer
ggtagcaatctaaggctatcatgtagtatc	Protospacer
*************.*************** 

8. spacer 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004882 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMBLin15, complete sequence) position: , mismatch: 2, identity: 0.933

ggtagcaatctaaagctatcatgtagtata	CRISPR spacer
ggtagcaatcggaagctatcatgtagtata	Protospacer
********** .******************

9. spacer 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053974 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed5, complete sequence) position: , mismatch: 2, identity: 0.933

ggtagcaatctaaagctatcatgtagtata	CRISPR spacer
ggtagcaatcggaagctatcatgtagtata	Protospacer
********** .******************

10. spacer 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009346 (Bacillus thuringiensis HD1002 plasmid 5, complete sequence) position: , mismatch: 2, identity: 0.933

ggtagcaatctaaagctatcatgtagtata	CRISPR spacer
ggtagcaatcggaagctatcatgtagtata	Protospacer
********** .******************

11. spacer 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010096 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMBLin15, complete sequence) position: , mismatch: 2, identity: 0.933

ggtagcaatctaaagctatcatgtagtata	CRISPR spacer
ggtagcaatcggaagctatcatgtagtata	Protospacer
********** .******************

12. spacer 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045027 (Bacillus thuringiensis strain JW-1 plasmid p5, complete sequence) position: , mismatch: 2, identity: 0.933

ggtagcaatctaaagctatcatgtagtata	CRISPR spacer
ggtagcaatcggaagctatcatgtagtata	Protospacer
********** .******************

13. spacer 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NC_005258 (Bacillus phage Bam35c, complete genome) position: , mismatch: 2, identity: 0.933

ggtagcaatctaaagctatcatgtagtata	CRISPR spacer
ggtagcaatcggaagctatcatgtagtata	Protospacer
********** .******************

14. spacer 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to AY257527 (Bacillus thuringiensis bacteriophage Bam35c, complete genome) position: , mismatch: 2, identity: 0.933

ggtagcaatctaaagctatcatgtagtata	CRISPR spacer
ggtagcaatcggaagctatcatgtagtata	Protospacer
********** .******************

15. spacer 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to AJ536073 (Bacillus phage pGIL01, complete genome) position: , mismatch: 2, identity: 0.933

ggtagcaatctaaagctatcatgtagtata	CRISPR spacer
ggtagcaatcggaagctatcatgtagtata	Protospacer
********** .******************

16. spacer 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to CP013282 (Bacillus phage pGIL02, complete sequence) position: , mismatch: 2, identity: 0.933

ggtagcaatctaaagctatcatgtagtata	CRISPR spacer
ggtagcaatcggaagctatcatgtagtata	Protospacer
********** .******************

17. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053974 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed5, complete sequence) position: , mismatch: 2, identity: 0.931

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcctcttcctcgacttttggtttcggtgg	Protospacer
** ******** *****************

18. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009346 (Bacillus thuringiensis HD1002 plasmid 5, complete sequence) position: , mismatch: 2, identity: 0.931

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcctcttcctcgacttttggtttcggtgg	Protospacer
** ******** *****************

19. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045027 (Bacillus thuringiensis strain JW-1 plasmid p5, complete sequence) position: , mismatch: 2, identity: 0.931

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcctcttcctcgacttttggtttcggtgg	Protospacer
** ******** *****************

20. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to CP013282 (Bacillus phage pGIL02, complete sequence) position: , mismatch: 2, identity: 0.931

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcctcttcctcgacttttggtttcggtgg	Protospacer
** ******** *****************

21. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NC_005258 (Bacillus phage Bam35c, complete genome) position: , mismatch: 2, identity: 0.931

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcctcttcctcgacttttggtttcggtgg	Protospacer
** ******** *****************

22. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to KC152966 (Bacillus phage Emet putative gene regulator and hypothetical proteins genes, complete cds) position: , mismatch: 2, identity: 0.931

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcgtcttcctccactttcggtttcggtgg	Protospacer
***********.*****.***********

23. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to KC152967 (Bacillus phage Sole hypothetical protein, putative gene regulators, and hypothetical protein genes, complete cds) position: , mismatch: 2, identity: 0.931

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcctcttcctcgacttttggtttcggtgg	Protospacer
** ******** *****************

24. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to AY257527 (Bacillus thuringiensis bacteriophage Bam35c, complete genome) position: , mismatch: 2, identity: 0.931

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcctcttcctcgacttttggtttcggtgg	Protospacer
** ******** *****************

25. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to AJ536073 (Bacillus phage pGIL01, complete genome) position: , mismatch: 2, identity: 0.931

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
tcctcttcctcgacttttggtttcggtgg	Protospacer
** ******** *****************

26. spacer 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NC_048762 (Bacillus phage vB_BtS_B83, complete genome) position: , mismatch: 3, identity: 0.9

tgttttgggttgccgatgtagaagtaaaaa	CRISPR spacer
tattttgggtagctgatgtagaagtaaaaa	Protospacer
*.******** **.****************

27. spacer 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020004 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.9

tgttttgggttgccgatgtagaagtaaaaa	CRISPR spacer
tattttgggtagctgatgtagaagtaaaaa	Protospacer
*.******** **.****************

28. spacer 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034552 (Bacillus cereus ATCC 14579 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.9

ggtagcaatctaaagctatcatgtagtata	CRISPR spacer
ggtagcaatctaaggctgtcatgtagtatc	Protospacer
*************.***.*********** 

29. spacer 2.8|2100733|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NC_004721 (Bacillus cereus ATCC 14579 plasmid pBClin15, complete sequence) position: , mismatch: 3, identity: 0.9

ggtagcaatctaaagctatcatgtagtata	CRISPR spacer
ggtagcaatctaaggctgtcatgtagtatc	Protospacer
*************.***.*********** 

30. spacer 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to GU071094 (Synechococcus phage S-SM1, complete genome) position: , mismatch: 4, identity: 0.867

-agtgcaagcaatcaaaaaaggtgcaattga	CRISPR spacer
tagtgcta-caatcaaaaaaggtgctattgc	Protospacer
 ***** * **************** **** 

31. spacer 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014285 (Bacillus thuringiensis strain Bt185 plasmid pBT1850055, complete sequence) position: , mismatch: 5, identity: 0.833

tgttttgggttgccgatgtagaagtaaaaa	CRISPR spacer
cagtctgggttgctgatgtagaagtaaaaa	Protospacer
.. *.********.****************

32. spacer 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NC_004821 (Bacillus prophage phBC6A52, complete genome) position: , mismatch: 5, identity: 0.833

tgttttgggttgccgatgtagaagtaaaaa	CRISPR spacer
cagtctgggttgctgatgtagaagtaaaaa	Protospacer
.. *.********.****************

33. spacer 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NC_049968 (Bacillus phage DK2, complete genome) position: , mismatch: 5, identity: 0.833

tgttttgggttgccgatgtagaagtaaaaa	CRISPR spacer
cagtttgggttgctgatgttgaagtaaaaa	Protospacer
.. **********.***** **********

34. spacer 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to KX190832 (Bacillus phage vB_BtS_BMBtp13, complete genome) position: , mismatch: 5, identity: 0.833

tgttttgggttgccgatgtagaagtaaaaa	CRISPR spacer
cagtctgggttgctgatgtagaagtaaaaa	Protospacer
.. *.********.****************

35. spacer 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to MK284528 (Bacillus phage DK3, complete genome) position: , mismatch: 5, identity: 0.833

tgttttgggttgccgatgtagaagtaaaaa	CRISPR spacer
cagtttgggttgctgatgttgaagtaaaaa	Protospacer
.. **********.***** **********

36. spacer 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032612 (Bacillus thuringiensis strain QZL38 plasmid p.4, complete sequence) position: , mismatch: 5, identity: 0.833

tgttttgggttgccgatgtagaagtaaaaa	CRISPR spacer
cagtctgggttgctgatgtagaagtaaaaa	Protospacer
.. *.********.****************

37. spacer 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NC_018502 (Bacillus thuringiensis HD-771 plasmid p05, complete sequence) position: , mismatch: 5, identity: 0.833

tgttttgggttgccgatgtagaagtaaaaa	CRISPR spacer
cggtatgggttgctgatgtagaagtgaaaa	Protospacer
.* * ********.***********.****

38. spacer 4.2|2238866|37|CP024116|CRISPRCasFinder,CRT matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 5, identity: 0.865

tgggacaaacatgctactttcttgaacgctcagtcaa-	CRISPR spacer
tgggacaaacatgctacttttttaaa-gcccaatcaag	Protospacer
********************.**.** **.**.**** 

39. spacer 4.10|2238867|37|CP024116|PILER-CR matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 5, identity: 0.865

tgggacaaacatgctactttcttgaacgctcagtcaa-	CRISPR spacer
tgggacaaacatgctacttttttaaa-gcccaatcaag	Protospacer
********************.**.** **.**.**** 

40. spacer 2.2|2100338|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to GU233956 (Bacillus phage 11143, partial sequence) position: , mismatch: 6, identity: 0.8

tgttttgggttgccgatgtagaagtaaaaa	CRISPR spacer
cagtctgggtggctgatgtagaagtaaaaa	Protospacer
.. *.***** **.****************

41. spacer 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NC_011738 (Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence) position: , mismatch: 6, identity: 0.8

agtgcaagcaatcaaaaaaggtgcaattga	CRISPR spacer
ataacaagctatcaaaaaaggtgctattgt	Protospacer
*  .***** ************** **** 

42. spacer 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NC_007051 (Staphylococcus phage 2638A, complete genome) position: , mismatch: 6, identity: 0.8

agtgcaagcaatcaaaaaaggtgcaattga	CRISPR spacer
atttgcaaaaatcaaaaaaggtgcaattga	Protospacer
* *   *. *********************

43. spacer 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to AY954954 (Bacteriophage 2638A, complete genome) position: , mismatch: 6, identity: 0.8

agtgcaagcaatcaaaaaaggtgcaattga	CRISPR spacer
atttgcaaaaatcaaaaaaggtgcaattga	Protospacer
* *   *. *********************

44. spacer 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034567 (Vibrio parahaemolyticus strain D3112 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.8

agtgcaagcaatcaaaaaaggtgcaattga	CRISPR spacer
cgtgcaagcaatgaaacaaggtgcatatca	Protospacer
 *********** *** ********  * *

45. spacer 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.8

agtgcaagcaatcaaaaaaggtgcaattga	CRISPR spacer
agggcaagcaatcaaaaaagctgtagggga	Protospacer
** ***************** **.*.  **

46. spacer 2.9|2100799|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NC_022088 (Bacillus phage Troll, complete genome) position: , mismatch: 6, identity: 0.793

tcgtcttcctctacttttggtttcggtgg	CRISPR spacer
ttttgttcttctacttttggttccggtgt	Protospacer
*. * ***.*************.***** 

47. spacer 2.10|2100864|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053575 (Citrobacter sp. TSA-1 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

tttaatgatgttgataagttgccccgcata	CRISPR spacer
atgagtgatattgataagttgtcccgcaaa	Protospacer
 * *.****.***********.****** *

48. spacer 2.10|2100864|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to MG945606 (UNVERIFIED: Microviridae sp. isolate 4483-1602, complete genome) position: , mismatch: 6, identity: 0.8

tttaatgatgttgataagttgccccgcata	CRISPR spacer
tttgatgatgttgataatttgcctcagatt	Protospacer
***.************* *****.*. ** 

49. spacer 2.1|2100272|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to MN856040 (Bacteriophage sp. isolate 317, complete genome) position: , mismatch: 8, identity: 0.733

ttcgatgtttatccatccactcttcgacaa	CRISPR spacer
ctcgatgtttttccatccactcagcagctg	Protospacer
.********* ***********  *..* .

50. spacer 2.3|2100404|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050068 (Klebsiella aerogenes strain 035 plasmid p35, complete sequence) position: , mismatch: 8, identity: 0.724

tacaaaaagtgactgagggggcttataac	CRISPR spacer
ccgggaaagtgattgagggggcttatgaa	Protospacer
.  ..*******.*************.* 

51. spacer 2.3|2100404|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020848 (Klebsiella variicola strain KPN1481 plasmid pKPN1481-1, complete sequence) position: , mismatch: 8, identity: 0.724

tacaaaaagtgactgagggggcttataac	CRISPR spacer
ccgggaaagtgattgagggggcttatgaa	Protospacer
.  ..*******.*************.* 

52. spacer 2.3|2100404|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043927 (Klebsiella quasipneumoniae subsp. quasipneumoniae strain M17277 plasmid p17277A_477, complete sequence) position: , mismatch: 8, identity: 0.724

tacaaaaagtgactgagggggcttataac	CRISPR spacer
ccgggaaagtgattgagggggcttatgaa	Protospacer
.  ..*******.*************.* 

53. spacer 2.3|2100404|29|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021699 (Klebsiella pneumoniae strain AR_0158 plasmid tig00000727, complete sequence) position: , mismatch: 8, identity: 0.724

tacaaaaagtgactgagggggcttataac	CRISPR spacer
ccgggaaagtgattgagggggcttatgaa	Protospacer
.  ..*******.*************.* 

54. spacer 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to KX827371 (Staphylococcus phage SpT99F3, complete genome) position: , mismatch: 8, identity: 0.733

agtgcaagcaatcaaaaaaggtgcaattga	CRISPR spacer
tttcaacaaaattaaaaaaggtgcaattga	Protospacer
  *  * . ***.*****************

55. spacer 2.4|2100469|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to MK075002 (Staphylococcus phage phiSP38-1, complete genome) position: , mismatch: 8, identity: 0.733

agtgcaagcaatcaaaaaaggtgcaattga	CRISPR spacer
tttcaacaaaattaaaaaaggtgcaattga	Protospacer
  *  * . ***.*****************

56. spacer 2.5|2100535|30|CP024116|PILER-CR,CRISPRCasFinder,CRT matches to MN047793 (Xanthomonas phage Xoo-sp13, complete genome) position: , mismatch: 8, identity: 0.733

tgaaaatttcggtaatgtaaaggtgtttag	CRISPR spacer
cgaagatttcggtaatgtaaagacccgtac	Protospacer
.***.*****************.. . ** 

57. spacer 4.8|2239257|37|CP024116|CRISPRCasFinder,CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 8, identity: 0.784

tgaacc---atttttcaataatcaatattcctttcttaag	CRISPR spacer
---actttaatttttcaaaaattaatattcctttcttatt	Protospacer
   **.   ********* ***.***************  

58. spacer 4.16|2239258|37|CP024116|PILER-CR matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 8, identity: 0.784

tgaacc---atttttcaataatcaatattcctttcttaag	CRISPR spacer
---actttaatttttcaaaaattaatattcctttcttatt	Protospacer
   **.   ********* ***.***************  

59. spacer 4.7|2239192|36|CP024116|CRISPRCasFinder,CRT matches to NZ_CP020750 (Bacillus mycoides strain Gnyt1 plasmid unnamed7, complete sequence) position: , mismatch: 9, identity: 0.75

tgtagcgaaccgttttatttagaagaattaactcat	CRISPR spacer
tgcagtgaaccgttttatttagaagagcttgctgca	Protospacer
**.**.********************..* .**   

60. spacer 4.15|2239193|36|CP024116|PILER-CR matches to NZ_CP020750 (Bacillus mycoides strain Gnyt1 plasmid unnamed7, complete sequence) position: , mismatch: 9, identity: 0.75

tgtagcgaaccgttttatttagaagaattaactcat	CRISPR spacer
tgcagtgaaccgttttatttagaagagcttgctgca	Protospacer
**.**.********************..* .**   

61. spacer 3.1|2228646|37|CP024116|CRISPRCasFinder,CRT matches to LC168164 (Tenacibaculum phage pT24 DNA, complete genome) position: , mismatch: 11, identity: 0.703

----catcaaaatcaaaaacagttaaattagatgcagatga	CRISPR spacer
gtgttacagaaac----aacagttgaattagatgcagatgg	Protospacer
    .*. .***.    *******.***************.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 157126 : 210994 55 Bacillus_phage(26.67%) protease,integrase,transposase attL 156919:156967|attR 174087:174135
DBSCAN-SWA_2 287352 : 295330 6 uncultured_virus(33.33%) NA NA
DBSCAN-SWA_3 328310 : 336682 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 758224 : 796413 39 Thermus_phage(20.0%) coat,transposase NA
DBSCAN-SWA_5 1109704 : 1177156 60 Bacillus_phage(36.36%) coat,integrase,bacteriocin attL 1170590:1170607|attR 1178026:1178043
DBSCAN-SWA_6 2353062 : 2421038 56 Bacillus_phage(36.84%) integrase,tail,holin,bacteriocin,transposase attL 2348228:2348244|attR 2382038:2382054
DBSCAN-SWA_7 2429385 : 2442496 17 Bacillus_phage(41.67%) NA NA
DBSCAN-SWA_8 2448104 : 2458901 18 uncultured_Caudovirales_phage(37.5%) NA NA
DBSCAN-SWA_9 2620588 : 2636069 29 Bacillus_phage(72.73%) integrase attL 2632303:2632317|attR 2638827:2638841
DBSCAN-SWA_10 2818261 : 2892229 85 Bacillus_phage(77.78%) capsid,portal,integrase,tail,protease,tRNA,holin,terminase,head attL 2849804:2849821|attR 2898950:2898967
DBSCAN-SWA_11 3162416 : 3197830 47 Bacillus_phage(87.18%) portal,tail,holin,terminase,head NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
CP024116.1|AWC58043.1|3189145_3189340_-|hypothetical-protein 3189145_3189340_- 64 aa aa NA NA NA 3162416-3197830 yes