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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP024120 Bacillus cytotoxicus strain CH_1 chromosome, complete genome 4 crisprs cas3,csa3,WYL,DinG,cas6,cas8b2,cas7,cas5,cas2,cas1,cas9,cas4,DEDDh,cas14j 0 2 8 0
CP024119 Bacillus cytotoxicus strain CH_1 plasmid pCh1_14, complete sequence 0 crisprs NA 0 0 0 0
CP024121 Bacillus cytotoxicus strain CH_1 plasmid pCh1_53, complete sequence 0 crisprs NA 0 0 1 0
CP024122 Bacillus cytotoxicus strain CH_1 plasmid pCh1_67, complete sequence 0 crisprs TnsE_C 0 0 4 0

Results visualization

1. CP024120
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024120_1 1577469-1577597 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024120_2 2037669-2037968 TypeII NA
4 spacers
cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024120_3 2156015-2156567 Unclear I-A
8 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP024120_4 2165898-2166650 Unclear I-A
11 spacers
cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP024120_2 2.1|2037705|30|CP024120|PILER-CR,CRISPRCasFinder,CRT 2037705-2037734 30 NZ_CP051687 Duganella sp. GN2-R2 plasmid unnamed2, complete sequence 5370-5399 7 0.767
CP024120_2 2.3|2037837|30|CP024120|PILER-CR,CRISPRCasFinder,CRT 2037837-2037866 30 NZ_CP016619 Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence 891211-891240 7 0.767

1. spacer 2.1|2037705|30|CP024120|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051687 (Duganella sp. GN2-R2 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ccacctt--tgaaacgcgtctggatcaacgag	CRISPR spacer
--gacttggcgaaacgcgtctggatccacgat	Protospacer
  . ***  .**************** **** 

2. spacer 2.3|2037837|30|CP024120|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016619 (Microvirga ossetica strain V5/3m plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

tagccaaatttcaatgtcatcggaaataat	CRISPR spacer
aagccaaatttccatgtcatcggtgaggtt	Protospacer
 *********** ********** .* . *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 269592 : 277570 6 uncultured_virus(33.33%) NA NA
DBSCAN-SWA_2 310546 : 318918 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 975696 : 1028150 64 Bacillus_phage(43.48%) capsid,portal,holin,tail,head,protease,terminase NA
DBSCAN-SWA_4 1098760 : 1164904 59 Escherichia_phage(18.18%) coat,integrase,bacteriocin attL 1138513:1138540|attR 1167526:1167553
DBSCAN-SWA_5 1978336 : 1986469 9 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_6 2278338 : 2344503 54 Bacillus_phage(42.86%) transposase,bacteriocin,holin NA
DBSCAN-SWA_7 2349031 : 2392738 56 Bacillus_phage(46.67%) integrase,capsid,tail,portal attL 2340078:2340137|attR 2392828:2393349
DBSCAN-SWA_8 3038814 : 3074141 46 Bacillus_phage(90.0%) portal,holin,tail,head,terminase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP024121
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 32758 : 39375 9 Bacillus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP024122
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 18609 18 Streptococcus_phage(100.0%) NA NA
DBSCAN-SWA_2 24142 : 27815 4 Lactobacillus_phage(50.0%) NA NA
DBSCAN-SWA_3 43682 : 44906 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_4 48244 : 65015 23 Bacillus_phage(30.0%) integrase attL 50095:50110|attR 66303:66318
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage