CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP027067	Klebsiella pneumoniae strain WCHKP8F4 plasmid pKPC2_095084, complete sequence	0 crisprs	RT	3
CP027065	Klebsiella pneumoniae strain WCHKP8F4 plasmid p1_095084, complete sequence	0 crisprs	NA	0
CP027066	Klebsiella pneumoniae strain WCHKP8F4 plasmid p2_095084, complete sequence	0 crisprs	NA	0
CP027068	Klebsiella pneumoniae strain WCHKP8F4 chromosome, complete genome	2 crisprs	csa3,RT,cas3,DEDDh,DinG,WYL	12

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1796 : 49847

Escherichia_phage(50.0%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ62918.1\|1796_2450_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AVJ62919.1\|2669_3134_+	mRNA interferase PemK	NA	NA	NA	NA
AVJ62920.1\|3130_3235_+	hypothetical protein	NA	NA	NA	NA
AVJ62921.1\|4444_5149_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ62922.1\|5659_6535_+	class A extended-spectrum beta-lactamase CTX-M-65	A0A1B0VBP7	Salmonella_phage	6.8e-152	98.9
AVJ62923.1\|6614_7538_+\|transposase	IS5/IS1182 family transposase	Q9MCT5	Escherichia_phage	2.2e-177	99.7
AVJ62924.1\|9288_9993_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ62925.1\|11103_11808_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ62926.1\|11873_12392_+	hypothetical protein	NA	NA	NA	NA
AVJ62927.1\|12396_12813_-	fosfomycin resistance glutathione transferase FosA3	Q2LI91	Bacillus_phage	2.0e-08	35.6
AVJ62928.1\|13198_13903_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ62929.1\|14580_14769_-	hypothetical protein	NA	NA	NA	NA
AVJ63055.1\|14860_15397_+	recombinase	Q1MVP4	Enterobacteria_phage	2.8e-84	100.0
AVJ62930.1\|15579_16440_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AVJ62931.1\|16609_17365_+	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1	NA	NA	NA	NA
AVJ62932.1\|17814_18519_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVJ62933.1\|18509_18650_+	hypothetical protein	NA	NA	NA	NA
AVJ63056.1\|20460_20742_+	hypothetical protein	NA	NA	NA	NA
AVJ63057.1\|20864_21215_-	protein stbB	NA	NA	NA	NA
AVJ62934.1\|21217_22180_-	plasmid segregation protein ParM	A0A222YXF2	Escherichia_phage	4.1e-94	53.9
AVJ63058.1\|22326_22620_+	hypothetical protein	NA	NA	NA	NA
AVJ62935.1\|22560_22740_-	hypothetical protein	NA	NA	NA	NA
AVJ62936.1\|22696_23380_+	DNA methylase	A0A2I7RE86	Vibrio_phage	5.6e-29	37.4
AVJ62937.1\|23380_23602_+	hypothetical protein	NA	NA	NA	NA
AVJ62938.1\|23615_24050_+	DUF1380 domain-containing protein	NA	NA	NA	NA
AVJ62939.1\|24749_25322_+	DUF1472 domain-containing protein	NA	NA	NA	NA
AVJ62940.1\|25294_25720_+	antirestriction protein	NA	NA	NA	NA
AVJ62941.1\|25766_26189_+	DUF1380 domain-containing protein	NA	NA	NA	NA
AVJ62942.1\|26185_26377_+	hypothetical protein	NA	NA	NA	NA
AVJ62943.1\|26690_28358_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.7e-164	53.3
AVJ62944.1\|29237_29495_-	hypothetical protein	NA	NA	NA	NA
AVJ62945.1\|29757_29988_+	hypothetical protein	NA	NA	NA	NA
AVJ62946.1\|30039_31401_+	DUF3560 domain-containing protein	NA	NA	NA	NA
AVJ62947.1\|31447_32011_+	class I SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	6.1e-21	37.3
AVJ62948.1\|32010_32259_+	hypothetical protein	NA	NA	NA	NA
AVJ63059.1\|32162_32378_+	transporter	NA	NA	NA	NA
AVJ62949.1\|32552_32789_-	hypothetical protein	NA	NA	NA	NA
AVJ62950.1\|32814_33381_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	8.5e-47	74.4
AVJ62951.1\|33438_33672_+	DUF905 domain-containing protein	NA	NA	NA	NA
AVJ62952.1\|35824_36259_+	protein PsiB	NA	NA	NA	NA
AVJ62953.1\|36255_36975_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
AVJ62954.1\|37635_37854_+	hypothetical protein	NA	NA	NA	NA
AVJ62955.1\|38028_38265_-	hypothetical protein	NA	NA	NA	NA
AVJ62956.1\|38378_39083_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ62957.1\|39073_39541_+	ATP-dependent endonuclease	NA	NA	NA	NA
AVJ62958.1\|39525_40548_+	DNA helicase UvrD	NA	NA	NA	NA
AVJ62959.1\|42081_43086_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
AVJ62960.1\|43164_43599_-	mercuric resistance operon regulatory protein	NA	NA	NA	NA
AVJ62961.1\|43670_44021_+	mercuric transporter	NA	NA	NA	NA
AVJ62962.1\|44034_44310_+	mercuric transporter periplasmic component	NA	NA	NA	NA
AVJ63060.1\|44345_44768_+	mercury transport protein MerC	NA	NA	NA	NA
AVJ62963.1\|44819_46514_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
AVJ62964.1\|46531_46894_+	transcriptional regulator	NA	NA	NA	NA
AVJ62965.1\|46890_47127_+	mercury resistance protein	NA	NA	NA	NA
AVJ62966.1\|47123_47831_+	EAL domain-containing protein	NA	NA	NA	NA
AVJ62967.1\|49142_49847_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

65580 : 76739

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ62985.1\|65580_66447_+	RepB family plasmid replication initiator protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
AVJ62986.1\|67556_68762_+	ParA family protein	A0A077SL49	Escherichia_phage	5.3e-163	69.3
AVJ62987.1\|68758_69736_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.8
AVJ62988.1\|69817_71089_-	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	7.5e-152	63.7
AVJ62989.1\|71088_71520_-	peptidase	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
AVJ62990.1\|71678_71930_+	hypothetical protein	NA	NA	NA	NA
AVJ62991.1\|71929_73414_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AVJ62992.1\|73662_74634_+	StbA family protein	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
AVJ62993.1\|74636_75308_+	Mediator of plasmid stability	NA	NA	NA	NA
AVJ62994.1\|75370_75601_+	hypothetical protein	NA	NA	NA	NA
AVJ62995.1\|76037_76739_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-26	36.2

DBSCAN-SWA_3

99448 : 111590

Escherichia_phage(71.43%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ63031.1\|99448_100153_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ63032.1\|100143_100335_+	hypothetical protein	NA	NA	NA	NA
AVJ63033.1\|100481_101432_+\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	6.6e-76	55.6
AVJ63034.1\|101428_102040_-	DUF2913 domain-containing protein	NA	NA	NA	NA
AVJ63066.1\|102036_102432_-	hypothetical protein	NA	NA	NA	NA
AVJ63035.1\|102945_103926_+\|transposase	IS5 family transposase ISKpn26	A0A077SK28	Escherichia_phage	1.0e-185	99.4
AVJ63067.1\|104577_105135_+	hypothetical protein	NA	NA	NA	NA
AVJ63036.1\|105603_106308_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ63037.1\|106440_107082_-	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	7.3e-55	45.9
AVJ63038.1\|107231_107732_-	hypothetical protein	NA	NA	NA	NA
AVJ63039.1\|107811_108516_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ63040.1\|108549_109041_-	hypothetical protein	NA	NA	NA	NA
AVJ63041.1\|109147_109885_+	resolvase	NA	NA	NA	NA
AVJ63042.1\|109881_110106_+	hypothetical protein	NA	NA	NA	NA
AVJ63043.1\|110227_110404_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
AVJ63044.1\|110585_111590_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP027068

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CRISPR-Cas detection and classification

Crispr_ID: CP027068_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027068_1

1790531-1790683

Orphan

Consensus_repeat	Method
CCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGAAGCGCCATCAGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027068_1

>merge|CP027068|1|1790531-1790683|CRISPRCasFinder
CCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGAAGCGCCATCAGGCAGTGTGGCGGCTACGCCTGACCCGGTCTGGATTATACGGTGGGTGTCATACCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGAAGCGCCATCAGGCA

>CP027068|1|1|1790531-1790683|CRISPRCasFinder
CCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGAAGCGCCATCAGGCA	GTGTGGCGGCTACGCCTGACCCGGTCTGGATTATACGGTGGGTGTCATA
CCCCGATTAGTTCGCCATCCCGTAGGCCTGATAAGCGAAGCGCCATCAGGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP027068.2\|AVJ64766.1\|1798687_1799125_+\|protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|182256
CP027068.2\|AVJ64770.1\|1804365_1806021_+\|hypothetical-protein	unknown	unknown	unknown
CP027068.2\|AVJ64753.1\|1779249_1780524_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|224220
CP027068.2\|AVJ64765.1\|1797549_1798686_+\|polysaccharide-export-protein-Wza	unknown	unknown	gnl\|CDD\|237903
CP027068.2\|AVJ64769.1\|1802875_1803787_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137
CP027068.2\|AVJ64762.1\|1790749_1792333_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
CP027068.2\|AVJ64754.1\|1780798_1781410_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
CP027068.2\|AVJ64767.1\|1799139_1801308_+\|tyrosine-protein-kinase	unknown	unknown	gnl\|CDD\|183173
CP027068.2\|AVJ64760.1\|1787950_1788532_+\|dCTP-deaminase	unknown	unknown	gnl\|CDD\|274062
CP027068.2\|AVJ68115.1\|1793098_1793989_+\|GalU-regulator-GalF	unknown	unknown	gnl\|CDD\|182252
CP027068.2\|AVJ64758.1\|1786255_1787104_+\|DNA-3-methyladenine-glycosylase-2	unknown	unknown	gnl\|CDD\|236671
CP027068.2\|AVJ64757.1\|1786134_1786233_+\|DNA-3-methyladenine-glycosidase	unknown	unknown	unknown
CP027068.2\|AVJ64764.1\|1795970_1797404_+\|capsule-assembly-Wzi-family-protein	unknown	unknown	gnl\|CDD\|379441
CP027068.2\|AVJ64763.1\|1794381_1795011_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|214471
CP027068.2\|AVJ64756.1\|1784765_1786118_-\|molecular-chaperone	unknown	unknown	gnl\|CDD\|236954
CP027068.2\|AVJ68114.1\|1782619_1784476_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP027068.2\|AVJ64761.1\|1788562_1790410_+\|outer-membrane-assembly-protein-AsmA	unknown	unknown	gnl\|CDD\|236772
CP027068.2\|AVJ64768.1\|1801410_1802838_+\|undecaprenyl-phosphate-galactose-phosphotransferase-WbaP	unknown	unknown	gnl\|CDD\|185126
CP027068.2\|AVJ64755.1\|1781903_1782605_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP027068.2\|AVJ64759.1\|1787218_1787860_+\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492

Protein	Function_ID	Function_description	E-value
CP027068.2\|AVJ64766.1\|1798687_1799125_+\|protein-tyrosine-phosphatase	gnl\|CDD\|182256	PRK10126, PRK10126, low molecular weight protein-tyrosine-phosphatase Wzb.	4.94869e-65
CP027068.2\|AVJ64753.1\|1779249_1780524_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|224220	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion].	2.89178e-108
CP027068.2\|AVJ64765.1\|1797549_1798686_+\|polysaccharide-export-protein-Wza	gnl\|CDD\|237903	PRK15078, PRK15078, polysaccharide export protein Wza; Provisional.	0
CP027068.2\|AVJ64769.1\|1802875_1803787_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	6.77537e-19
CP027068.2\|AVJ64762.1\|1790749_1792333_-\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.3049e-98
CP027068.2\|AVJ64754.1\|1780798_1781410_-\|transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	0.00180993
CP027068.2\|AVJ64767.1\|1799139_1801308_+\|tyrosine-protein-kinase	gnl\|CDD\|183173	PRK11519, PRK11519, tyrosine-protein kinase Wzc.	0
CP027068.2\|AVJ64760.1\|1787950_1788532_+\|dCTP-deaminase	gnl\|CDD\|274062	TIGR02274, Probable_deoxycytidine_triphosphate_deaminase, deoxycytidine triphosphate deaminase. Members of this family include the Escherichia coli monofunctional deoxycytidine triphosphate deaminase (dCTP deaminase) and a Methanocaldococcus jannaschii bifunctional dCTP deaminase (3.5.4.13)/dUTP diphosphatase (EC 3.6.1.23), which has the EC number 3.5.4.30 for the overall operation. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	1.60713e-93
CP027068.2\|AVJ68115.1\|1793098_1793989_+\|GalU-regulator-GalF	gnl\|CDD\|182252	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF.	0
CP027068.2\|AVJ64758.1\|1786255_1787104_+\|DNA-3-methyladenine-glycosylase-2	gnl\|CDD\|236671	PRK10308, PRK10308, 3-methyl-adenine DNA glycosylase II; Provisional.	2.88034e-180
CP027068.2\|AVJ68114.1\|1782619_1784476_-\|histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.24274e-41
CP027068.2\|AVJ64764.1\|1795970_1797404_+\|capsule-assembly-Wzi-family-protein	gnl\|CDD\|379441	pfam14052, Caps_assemb_Wzi, Capsule assembly protein Wzi. Many bacteria are covered in a layer of surface-associated polysaccharide called the capsule. These capsules can be divided into four groups depending upon the organisation of genes responsible for capsule assembly, the assembly pathway and regulation. This family plays a role in group 1 capsule biosynthesis. It is likely to be involved in the later stages of capsule assembly. It is likely to consist of a beta-barrel structure.	2.56124e-134
CP027068.2\|AVJ64763.1\|1794381_1795011_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|214471	smart00014, acidPPc, Acid phosphatase homologues.	2.11746e-15
CP027068.2\|AVJ64756.1\|1784765_1786118_-\|molecular-chaperone	gnl\|CDD\|236954	PRK11678, PRK11678, putative chaperone; Provisional.	0
CP027068.2\|AVJ64761.1\|1788562_1790410_+\|outer-membrane-assembly-protein-AsmA	gnl\|CDD\|236772	PRK10833, PRK10833, putative assembly protein; Provisional.	0
CP027068.2\|AVJ64768.1\|1801410_1802838_+\|undecaprenyl-phosphate-galactose-phosphotransferase-WbaP	gnl\|CDD\|185126	PRK15204, PRK15204, undecaprenyl-phosphate galactose phosphotransferase; Provisional.	0
CP027068.2\|AVJ64755.1\|1781903_1782605_-\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.98041e-36
CP027068.2\|AVJ64759.1\|1787218_1787860_+\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	1.7406e-147

>CP027068.2|AVJ64761.1|1788562_1790410_+|outer-membrane-assembly-protein-AsmA
MRRILTTLMILLAVIVAGLTSLVLLVNPNDFRAYMVHEVAERSGYQLDLDGPLRWHVWPQLSILSGRMTLTARGAEEPVIRADNMRLDVALLPLLSHQLQVKQVMLKGAVIQLTPKTEAVRDSSAPVVPHDNTLPLAQEDRGWSYDVRQLQVADSVLFFQHESGEQVTVRDIRLQMEQDENHRATVDFSGRVNRDQRDLALSFSATVQGGDYPHSLKADFTQLSWQLRGAELPPDGINGQGSLQASWQEDDKTLRFDNLNLMANRSTVTGSGSVVLGERPDWSLDLHATTLDLDSLLAQRSPATDSSASQQGQSQTRPLRPVIADSDEREDYQSLRGFNGRMALSADQLQWRGLNFTQVQSEISNQQGLLTVSKMQGNLDGGQLSLPGTLDARGDTPLATFQPALQNVEIGSLIKAFNYSLNLTGKLSLSGEFSGTRIDADDFRRHWQGQAQLQMADTRTEGLNFQQLVQQAVERSTNVRAQENYDNATRLDSVSSRLTLDNGLVTLNRLQGQSDVMAMTGEGQLDLQKENCDMRFNVRVLGGWKGEGKLIDRLKQTAIPLRIYGEWQSLSYSLQVDQILRKQLQDEAKQRLNDWVERNKGSKDGNDAKKLLDKL
>CP027068.2|AVJ64760.1|1787950_1788532_+|dCTP-deaminase
MRLCDRDIEAWLDEGRLAINPRPPVERINGATVDVRLGNKFRTFRGHTAPFIDLSGPKAEVSAALDRVMSEEIVLPEGEAFFLHPGELALAVTYESVTLPADLVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMPIGALSFEPLSGPAARPYNRREDAKYRDQQGAVASRIDKD
>CP027068.2|AVJ64759.1|1787218_1787860_+|uridine-kinase
MTDMSHQCVIVGIAGASASGKSLIASTLYRELREQVGDEHIGVIPEDSYYKDQSHLSMEERVKTNYDHPSSMDHSLLFQHLQMLKSGQPIELPVYSYVEHTRTPNTIHVEPKKVIILEGILLLTDARLRNELNFSIFVDTPLDICLMRRIKRDVNERGRSMDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE
>CP027068.2|AVJ64758.1|1786255_1787104_+|DNA-3-methyladenine-glycosylase-2
MVLLPWTPPYDWAWMVGFLQARAVAGVERFHDGGYSRSFGVEGHRGLIHLAPDEEAQGLRVSLSPGLQPVAEICYARIGQLFDLACDPRQVARTLGDLAQARPGLRLPGALDAFEQAVRAVLGQLVSVAMAARLTAKVAAGWGEPLAEAPGYVLFPTPEALSRADPQALKALGMPLRRAEALIHLARAALSGELPLTAPADIDAGLRQLQTLPGIGRWTANYFALRGWQAKDIFLPDDYLIKQRFPGMTPAAIARYARRWQPMRSYALLHIWYTDDWAPAAE
>CP027068.2|AVJ64757.1|1786134_1786233_+|DNA-3-methyladenine-glycosidase
MPVKKGGDFSGSSPCRQPEFKSKALMVKGDYH
>CP027068.2|AVJ64756.1|1784765_1786118_-|molecular-chaperone
MFIGFDYGTANCSVAVMRENTPQLLTLENGSALLPSMLCAPTREAVSEWLYRHHDVPTHSDENQALLRRAIAANRDEDIEVLRNSVQFGLASLQQYVEDPQEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKLQAESQLPEQIDQAVIGRPINFQGLGGDEANAQAQGILERAAHRAGFRDVVFQFEPVAAGLDFEATLSEEKRVLVVDIGGGTTDCSLLLMGPQWRERADRQQSLLGHSGCRIGGNDLDIALAFKCLMPLLGMGGETEKGTALPILPWWNAVAINDVPAQSDFYSTANGRLLNDLLRSARDADKVALLLKVWRQRLSYRLVRSAEESKIALSSAASVETALPFIQDDLATAIAQQGLEAALDQPLTRIMEQVRLALDSSQTTPDVIYLTGGSARSPLIKKALAAQLPGIPLAGGDDFGSVTAGLARWAQVVFR
>CP027068.2|AVJ68114.1|1782619_1784476_-|histidine-kinase
MLLVAPQAQAATRQVGIDIPVQWYADDSGQMTLDRFAALPADQLATTRQIPSFGYSRKTWWLRSELPGTWFAGEPRWMQLGPSFVDHLTIYYRPLGSDAPWAQRTFGDRDVARESDLHYRESVLILPPPPTAAGYEVVFRLQSTSTLILLASLSSPQEFVQRATADTAFWSFYFGLAAVASGVALWLALALRRRLLWGICLFSLNYPLVAALHGFPEWFFGHAALPFQDFMISSLSLFSYATALWLHSEIFDLKKNMPRLHQLLIAAVILNLVLQVSIPLGFYGFAMQIEGVVFIIITPVLLFTSWWLWRKKAIDRTTLLLGLLPPFYVVAAVLVQLSIHGIIPFHMAIYSLWQYALIVHIITVLIIAILRVRAENRQLEQKQRLARELQIEREASFHQRQFMGMVAHEFRTPLAVIQAALENLRLSAASTSQEARFDRIGRAATRLVQLTDNCLADARLASHDLHVERQQTALLTVINMAASVVAISHDHYLNIRQHGAVESPQLQADAGLLCIAIANLLDNAVKYSPPGEIAIDIHSDAGQTELRIRDHGPGLPAGQAELIFERYRRGEHTSPVPGGTGLGLYVARQIVQAHDGKLWLAEHGPDGCTFILTLPTVA
>CP027068.2|AVJ64755.1|1781903_1782605_-|DNA-binding-response-regulator
MALRLAIIEDNADLLDELLAWLGYRGFEVWGTRSAEAFWRQLHSHPVDIVLVDIGLPGEDGFSVLNYLHELGHYGLVVVSARGQQQDKLQALSLGADAYLIKPVNFAHLAETLTALGARLRQDRPAAPPAEAIGTPPAVSPGSWRLQEDKLISPDARTLELTQQEYRLVELLMRNRNEVCSKLDLHACLFSHESEPDLHRIDVVVSRLRHKARQQGIHLPVRAIFGKGLAFIS
>CP027068.2|AVJ64754.1|1780798_1781410_-|transcriptional-regulator
MRNINVTINTRNAFVRESLVAMVNDLTRGDLRARFSWRNTDLSDEDIIICEVIPGEIYLCNTLIKNRKRGSSLIILHSYDQLPEDEFMINCLKGVIFVSLKTASIPQLLTIIKSELQHCMTPTATDAAGRELSCASCPHRVLSRSQTAVVHGILEGLDMSKIAALQRVSPRTAAYHKNKIMEKYSLNNNHEFFQFMNLLRERW
>CP027068.2|AVJ64753.1|1779249_1780524_+|dicarboxylate/amino-acid:cation-symporter
MANANKLTLFIVIFMLMGILSGAAIHAYATPTTVSAWADNITLLTDLFLRLIKMVIAPLVFSTLTVGIMRLGETATIGRVGGKAMVWFITSSVLSILVGLVIVTFQHPGAGLNLAVPKEAVDTGLAVSGMSLKGFLSHTIPTSITEAMANNEILQIVVFSMFFGIAGASLGEKFNAPLVAALNVVSHIMLKVTGYVMYVAPLAIFAAISSVIASQGLGILLNYASFIGGYYLAVLLTSAVLIAVGYMVLKKEVFRLLNMLKDPVLVAFTTSSSEAAYPKTLERLVKFGCSRNIVSFVLPIGYSFNLVGSMVYCSFAAMFIAQAYNVPLSFSEITVMMLTLMLASKGIAGVPRSALVVLAATIPSFNIPVAGILLLMGIDHFLDMGRSAINVLGNGIATAMLSKNEGLLTDEEAQPDWEVEKAEA
>CP027068.2|AVJ64762.1|1790749_1792333_-|TerC-family-protein
MEWIADPSIWAGLVTLVVIELVLGIDNLVFIAILAEKLPPAQRDRARITGLMLAMVMRLLLLASISWLVTLTKPLIVFHDFSFSARDLIMLFGGLFLLFKATVELNERLEGKDSDNPTQRKGAKFWAVVAQIVVLDAIFSLDSVITAVGMVDHLAVMMVAVVIAISLMLMASKALTRFVNSHPTIVILCLSFLLMIGFSLIAEGFSFIIPKGYLYAAIGFSVMIEALNQLAQFNRRRFLSANMTLRQRTTEAVMNLLSGQKEKAELDADTASLVADQDQHPLFNPQERLMIERVLNLNQRSVSSIMTSRHDIERINLSAPEEEIRSLVEKNQHTRLVVTGGKDNEDLLGVVHVIDLLQQSLRQEPLDLQALVRQPLVFPEGLPLLSALEQFRQARTHFAFVVDEFGSVEGIVTLSDVMETIAGNLPNEVEEIDARHDIQHHQDGSWTVNGHMPLEDLVQYVPLPLDDKREYHTVAGLLMEYLQHVPQVGETIEIDGYTLRTLQVDSHRVQKVQIVPPVKQDELDYEV
>CP027068.2|AVJ68115.1|1793098_1793989_+|GalU-regulator-GalF
MANLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEIVLVTHSSKNAVENHFDTSYELEALLEQRVKRQLLAEVQAICPPGVTIMNVRQAQPLGLGHSILCARPVVGDNPFVVVLPDIILDGGTADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPMVAEGQVARIVEFIEKPDEPQTLDSDLMAVGRYVLSADIWAELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGESYDCGKKMGYMQAFVTYGMRNLKEGAKFRESIKKLLA
>CP027068.2|AVJ64763.1|1794381_1795011_+|phosphatase-PAP2-family-protein
MNWQLISFFGDSTVLLPSAAALFIVLMLRKTSRLLAWQWSLLFGITGAIVCASKLAFMGWGLGIRELDFTGFSGHSALSAAFWPIFLWLLSARFSVGLRKAAVITGYVLAAVVGYSRLVIHAHSVSEVIAGLLLGAAGRALFLVLQKRTPDPENVNISWGGVACLVMVPLILLHSGSKAPTQSLLGQIATAVGPLDKPFTRTDLHKQAW
>CP027068.2|AVJ64764.1|1795970_1797404_+|capsule-assembly-Wzi-family-protein
MIKIARIAVTLGLLSSLGAQAYAAGLVVNDNDLRNDLAWLSDRGVIHLSLSTWPLSQEEIARALKKAKPSYSSEQVVLARINQRLSALKADFRVTGYTSTDQPGTPQGFGQTQPADNSLGLAFNNSGEWWDVHLQGNVEGGERISNGSRFNANGAYGAVKFWNQWLSFGQVPQWWGPGYEGSLIRGDAMRPMTGFLMQRAEQAAPETWWLRWVGPWQYQISASQMNQYTAVPHTKIIGGRFTFTPFQSLELGASRIMQWGGEGRPESFSSFWDGFTGKDNTGTDNEPGNQLAGFDFKFKLEPTLGWPVSFYGQMVGEDESGYLPSANMFLGGVEGHHGWGKDAVNWYVEAHDTRTNMSRTNYSYTHHIYKDGYYQQGYPLGDSMGGDGQLVAGKVELITEDNQRWSTRLVYAKVNPENQSINKAFPHADTLKGVQLGWSGDVYQSVRLNTSLWYTNANNSDSDDVGASAGIEIPFSL
>CP027068.2|AVJ64765.1|1797549_1798686_+|polysaccharide-export-protein-Wza
MKKKIVRFSALALAIGFLSGCTIIPGQGLNSLRKNVVELPDSDYDLDKLVNVYPMTPGLIDQLRPETVLARPNPQLDNLLRSYEYRIGVGDVLMVTVWDHPELTTPAGQYRSASDTGNWVNSDGTIFYPYIGKVQVAGKTLSQVRQDIASRLTTYIESPQVDVSVAAFRSQKVYVTGEVTKSGQQPITNIPLTVMDAINAAGGLAPDADWRNVVLTHNGKDTKVSLYALMQKGDLTQNHMLYPGDILFVPRNDDLKVFVMGEVGKQSTLKMDRSGMTLAEAIGNAEGMSQAYSDATGVFVIRQLKGDKQGKIANIYQLNAQDASAMVLGTEFELQPYDIVYVTSAPLVRWNRVISQLVPTITGVHDMTETVRYIRTWP
>CP027068.2|AVJ64766.1|1798687_1799125_+|protein-tyrosine-phosphatase
MFESILVICTGNICRSPIGERLLRKLLPSKVIDSAGTNAMVGYGADLNACKIASLHNLSLENHVAKQYSASMGRKYDLILVMEKAHIEQIGRISPEARGKTMLYGHWCNQRDIPDPYRKSEEAFVSVYNLIELAGERWAEKLGTK
>CP027068.2|AVJ64767.1|1799139_1801308_+|tyrosine-protein-kinase
MSPVINKQASQESDEIDFGRLIGELIDHRKLIISVTSLFTVIALIYSIFSTPVYQADALIQVEQKQGNSILNNLSQILPDSQPQSAPEIALLQSRMILGKTVDDLNLQAVIKQDYFPVFGRGLARLLGDKPGNLTVRRLYITGSHDEIPKIKITTNDNNSYTVEYNDEKFNASIGKLVNKNDITIKIDKIDAEPGTSFTVYYTSKLDAISALQKKFNISEQGKDTGILNLTLTGENPKQIKEIINSISENYLAQNIARQAAQDAKSLAFLNEQLPIVRSDLDNAESKLNQYRRQNDSVDLSLEAKSVLDQIVNVDNQLNQLTFRESEISQLYTKEHPTYKALLEKRKTLQDEKLKLNKKVSAMPATQQEILRLNRDVESGRAVFMMLLNRQQELNIAKSSAIGNVRIIDNAVTQPEPVKPKKILVVIGGFVLGFLISIGIVLLRVFLRRGIETPEQLEELGINVYASIPISELLTQKATKLEGLRRKEQSEPQTFLAIENPADIAIEAIRGLRTSLHFAMMEARNNILMISGASPNAGKTFVSSNLSAVIAQTGKSVLYIDTDMRKGYAHKLFELDNNNGLSEILSGKVEVSQAVKKVHSAGFDFISRGQVPPNPAELLMHRRFGELLAWAEKKYDIVILDTPPILAVTDPAIIGHYAGTTLLVARFEKNTAKEIEISAKRFENSGVIVKGCILNGVVKKASSYYGYGYNNYGYSYNDKDKH
>CP027068.2|AVJ64768.1|1801410_1802838_+|undecaprenyl-phosphate-galactose-phosphotransferase-WbaP
MRLLVKNVIVSVTLALSDFISFILSLYIALGVLSLIVEKNDYLLLTNEIDGWFLLHWILGVCCVGWYSVRLRHYFYRKTFWFELKEILRTLVIFAIIEIAVMAFTTWSFSRYLWVITWLFVIILVPLSRMVTKTLLNKAGMWQRDTWIVGSSENAHEAYKAISGEKNLGLNIVGFISSPGGVPSGEAIDGIPVIENNLEWLNDIDPKTQFIVAVESHQSKIRNAWLRNFMIKGYRYVSVIPTLRGMPLDSTDMSFIFSHEVMIFRVQQNLAKWSSRILKRLFDIIGSLSIITLLSPVLLYISLKVKKDGGPAIYGHERIGKGGKTFKCLKFRSMVINSKEVLEELLNNDINAREEWNLTFKLKNDPRITKIGGFLRRTSLDELPQLFNVLKGEMSLVGPRPIITAELERYNEEVDYYLLSKPGMTGLWQVSGRSDVDYETRVYLDAWYVKNWSMWNDIAILFKTVGVVLKRDGAY
>CP027068.2|AVJ64769.1|1802875_1803787_+|glycosyltransferase-family-2-protein
MKYYIAIPTYNGGDLWRTTVDNIKKNTPANTLVHVIDSGSKDDTATVALINGFDVTSIQSSDFNHGGTRNEAINQYIEDYDVVIFLTQDAIPEPGFIESIITVFQDEEIVCAYGRQLPHTDANPLAQHARAFNYPDKGYIASKSSIPKMGLKTAFMSNSFSAYRLSVFKKIGGFPSNTILCEDMFYTAKAILAGYKVAYVPEAKVHHSHNYSPSEEFKRYFDIGVFHTDEPWIRNSFGGAGGEGKRFIISEFKFLLKNYPHWIPASFLYNVMKFIGFKAGKSYQFLPRFLIKKFSMHKRFWGH
>CP027068.2|AVJ64770.1|1804365_1806021_+|hypothetical-protein
MFGAKSDGVFNNKEAIEKALQYAYINGLSCTFLKGQYYSEDISIDFPIRIVLQNGCCLNFELSIIGGLFYSESEFIINQDWKAFSRGTRSFSNKNSKMNKGDMVSVSLDYRHGGSAQIGNENGIDILNVVDVNETAFIVKNGTRFPYSYPIISKLKSVIAFKGEIPKESYTINGDFINKFSPGDVIRIENVDGTDSVGGGKYYFEYVEVKSVNNSHIILSARTVYSHSNPWLIKTNFIKHVNLTGEGRIKKLVLRNIKDVKLSSLFINRLIISNCYGVNVSNLTLTGLGEPSTVNITYCFGKSIFQNLQISNSESNSDNSTLKIMSSPQIILSNITISDSNSSSKKQSNYSLFVDSLYTPYSCWNDNIIVNNVICERPRSHFKRGVWFYGLRRSVIDSIVGADVFLQGSVDCYFKNFNVSNYMLEIKDLVRCDVTAKCMSAVTRGGIDNVLRLEFDGRLTGDFSDKSYYCKFTAGTIDPEKGVNYSQGDGNYLYFNSPTLNSTDNKINLSVEFQKNLIIEPTRLSLVRQRESLKMGKDVSNIYIKNNFQKI

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Crispr_ID: CP027068_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027068_2

4519085-4519179

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027068_2

>merge|CP027068|2|4519085-4519179|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>CP027068|2|2|4519085-4519179|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP027068.2\|AVJ67282.1\|4508203_4509706_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP027068.2\|AVJ67293.1\|4525140_4526427_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
CP027068.2\|AVJ67294.1\|4526432_4527422_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP027068.2\|AVJ67287.1\|4516912_4517452_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
CP027068.2\|AVJ67298.1\|4529425_4529629_-\|hypothetical-protein	unknown	unknown	unknown
CP027068.2\|AVJ67292.1\|4522737_4525086_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
CP027068.2\|AVJ67280.1\|4505300_4506146_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
CP027068.2\|AVJ67283.1\|4509843_4510539_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP027068.2\|AVJ67290.1\|4520935_4521634_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
CP027068.2\|AVJ67296.1\|4528242_4528620_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP027068.2\|AVJ67281.1\|4506483_4508193_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP027068.2\|AVJ67285.1\|4513259_4516166_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP027068.2\|AVJ67297.1\|4528624_4529473_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
CP027068.2\|AVJ67291.1\|4521666_4522494_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
CP027068.2\|AVJ67284.1\|4510714_4513072_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP027068.2\|AVJ67288.1\|4517631_4518996_-\|malate-permease	unknown	unknown	gnl\|CDD\|377030
CP027068.2\|AVJ67286.1\|4516178_4516838_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP027068.2\|AVJ67295.1\|4527418_4528240_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
CP027068.2\|AVJ68237.1\|4517414_4517603_+\|hypothetical-protein	unknown	unknown	unknown
CP027068.2\|AVJ67289.1\|4519320_4520946_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827

Protein	Function_ID	Function_description	E-value
CP027068.2\|AVJ67282.1\|4508203_4509706_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP027068.2\|AVJ67293.1\|4525140_4526427_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP027068.2\|AVJ67294.1\|4526432_4527422_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP027068.2\|AVJ67287.1\|4516912_4517452_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
CP027068.2\|AVJ67292.1\|4522737_4525086_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP027068.2\|AVJ67280.1\|4505300_4506146_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP027068.2\|AVJ67283.1\|4509843_4510539_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
CP027068.2\|AVJ67290.1\|4520935_4521634_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
CP027068.2\|AVJ67296.1\|4528242_4528620_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
CP027068.2\|AVJ67281.1\|4506483_4508193_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP027068.2\|AVJ67284.1\|4510714_4513072_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP027068.2\|AVJ67297.1\|4528624_4529473_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP027068.2\|AVJ67291.1\|4521666_4522494_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
CP027068.2\|AVJ67285.1\|4513259_4516166_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP027068.2\|AVJ67288.1\|4517631_4518996_-\|malate-permease	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
CP027068.2\|AVJ67286.1\|4516178_4516838_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
CP027068.2\|AVJ67295.1\|4527418_4528240_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
CP027068.2\|AVJ67289.1\|4519320_4520946_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173

>CP027068.2|AVJ67288.1|4517631_4518996_-|malate-permease
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>CP027068.2|AVJ68237.1|4517414_4517603_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>CP027068.2|AVJ67287.1|4516912_4517452_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>CP027068.2|AVJ67286.1|4516178_4516838_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>CP027068.2|AVJ67285.1|4513259_4516166_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>CP027068.2|AVJ67284.1|4510714_4513072_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>CP027068.2|AVJ67283.1|4509843_4510539_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>CP027068.2|AVJ67282.1|4508203_4509706_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>CP027068.2|AVJ67281.1|4506483_4508193_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>CP027068.2|AVJ67280.1|4505300_4506146_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>CP027068.2|AVJ67289.1|4519320_4520946_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>CP027068.2|AVJ67290.1|4520935_4521634_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>CP027068.2|AVJ67291.1|4521666_4522494_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>CP027068.2|AVJ67292.1|4522737_4525086_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>CP027068.2|AVJ67293.1|4525140_4526427_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>CP027068.2|AVJ67294.1|4526432_4527422_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>CP027068.2|AVJ67295.1|4527418_4528240_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>CP027068.2|AVJ67296.1|4528242_4528620_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>CP027068.2|AVJ67297.1|4528624_4529473_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>CP027068.2|AVJ67298.1|4529425_4529629_-|hypothetical-protein
MFPVAGFVFFLKRSPGRQIAHKRRSGKALAATRQNDAAGSPDKAQRAAIREESGRDGFAFVEAFLPV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

449709 : 519087

uncultured_Caudovirales_phage(61.11%)

portal,head,protease,capsid,integrase,tail,tRNA,terminase

attL 467317:467334|attR 483312:483329

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ63492.1\|449709_450657_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
AVJ63493.1\|450671_451181_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
AVJ63494.1\|451309_452434_+	DNA-protecting protein DprA	NA	NA	NA	NA
AVJ63495.1\|452405_452879_+	DUF494 domain-containing protein	NA	NA	NA	NA
AVJ63496.1\|452904_453447_+	hypothetical protein	NA	NA	NA	NA
AVJ63497.1\|453451_454024_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
AVJ63498.1\|454027_454846_+	shikimate dehydrogenase	NA	NA	NA	NA
AVJ63499.1\|454842_455100_+	DUF1488 domain-containing protein	NA	NA	NA	NA
AVJ68065.1\|455075_455630_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
AVJ63500.1\|461425_461647_-	hypothetical protein	NA	NA	NA	NA
AVJ63501.1\|461940_465051_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
AVJ63502.1\|465063_466203_-	MexX family efflux pump subunit	NA	NA	NA	NA
AVJ63503.1\|466581_467232_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
467317:467334	attL	NA	NA	NA	NA
AVJ63504.1\|467507_468734_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
AVJ63505.1\|468826_469768_+	hypothetical protein	NA	NA	NA	NA
AVJ63506.1\|469949_470234_+	transcriptional regulator	NA	NA	NA	NA
AVJ63507.1\|470244_471024_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
AVJ63508.1\|471147_471342_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
AVJ68066.1\|471565_471745_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.6e-26	94.9
AVJ63509.1\|471737_471926_+	hypothetical protein	NA	NA	NA	NA
AVJ63510.1\|471918_472233_+	hypothetical protein	NA	NA	NA	NA
AVJ63511.1\|472229_472598_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
AVJ63512.1\|472594_472960_+	hypothetical protein	NA	NA	NA	NA
AVJ63513.1\|472959_475095_+	DNA primase	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
AVJ63514.1\|475437_475773_+	hypothetical protein	NA	NA	NA	NA
AVJ63515.1\|475821_476334_-	hypothetical protein	NA	NA	NA	NA
AVJ63516.1\|476597_477764_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
AVJ63517.1\|477815_478376_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
AVJ63518.1\|478377_479619_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
AVJ63519.1\|479615_479951_+\|head,tail	head-tail adaptor	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
AVJ63520.1\|479947_480247_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
AVJ63521.1\|480246_480690_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
AVJ63522.1\|480816_481008_+\|terminase	terminase	NA	NA	NA	NA
AVJ63523.1\|480965_481322_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
AVJ63524.1\|481305_482967_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
AVJ63525.1\|482969_483161_+	hypothetical protein	NA	NA	NA	NA
AVJ63526.1\|483314_483611_-	Fis family transcriptional regulator	NA	NA	NA	NA
483312:483329	attR	NA	NA	NA	NA
AVJ63527.1\|483635_484601_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
AVJ63528.1\|484758_484953_-	hypothetical protein	NA	NA	NA	NA
AVJ63529.1\|484958_485840_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
AVJ63530.1\|485851_487303_-	sodium/panthothenate symporter	NA	NA	NA	NA
AVJ63531.1\|487292_487535_-	hypothetical protein	NA	NA	NA	NA
AVJ63532.1\|487645_488995_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
AVJ63533.1\|489005_489473_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
AVJ63534.1\|489495_489948_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
AVJ63535.1\|490171_490780_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
AVJ63536.1\|490779_491781_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
AVJ63537.1\|492009_492201_+	hypothetical protein	NA	NA	NA	NA
AVJ63538.1\|492280_494221_+	RNase E specificity factor CsrD	NA	NA	NA	NA
AVJ63539.1\|494342_494549_-	hypothetical protein	NA	NA	NA	NA
AVJ63540.1\|494526_495570_+	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
AVJ63541.1\|495640_496633_+	rod shape-determining protein MreC	NA	NA	NA	NA
AVJ63542.1\|496632_497121_+	rod shape-determining protein MreD	NA	NA	NA	NA
AVJ63543.1\|497128_497710_+	septum formation inhibitor Maf	NA	NA	NA	NA
AVJ63544.1\|497712_499182_+	ribonuclease G	NA	NA	NA	NA
AVJ63545.1\|499219_503017_+	AsmA2 domain-containing protein	NA	NA	NA	NA
AVJ63546.1\|503105_504551_+\|protease	metalloprotease TldD	NA	NA	NA	NA
AVJ63547.1\|504586_505516_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
AVJ63548.1\|505647_505851_+	protein AaeX	NA	NA	NA	NA
AVJ63549.1\|505858_506791_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
AVJ63550.1\|506796_508764_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
AVJ63551.1\|508843_509119_+	hypothetical protein	NA	NA	NA	NA
AVJ63552.1\|509169_509436_-	DUF1471 domain-containing protein	NA	NA	NA	NA
AVJ63553.1\|509534_509798_-	DUF1471 domain-containing protein	NA	NA	NA	NA
AVJ63554.1\|510173_510644_-	arginine repressor	NA	NA	NA	NA
AVJ63555.1\|511058_511997_+	malate dehydrogenase	NA	NA	NA	NA
AVJ63556.1\|512133_513192_-\|protease	serine endoprotease DegS	NA	NA	NA	NA
AVJ63557.1\|513279_514647_-\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	6.0e-22	25.3
AVJ68067.1\|514820_515219_-	hypothetical protein	NA	NA	NA	NA
AVJ63558.1\|515409_516537_+	cell division protein ZapE	NA	NA	NA	NA
AVJ63559.1\|516802_517231_+	50S ribosomal protein L13	NA	NA	NA	NA
AVJ63560.1\|517246_517639_+	30S ribosomal protein S9	NA	NA	NA	NA
AVJ63561.1\|517748_517952_-	hypothetical protein	NA	NA	NA	NA
AVJ63562.1\|517950_518589_+	stringent starvation protein A	NA	NA	NA	NA
AVJ63563.1\|518592_519087_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.5e-26	54.8

DBSCAN-SWA_2

1226391 : 1252446

Salmonella_phage(44.12%)

transposase,integrase

attL 1219879:1219892|attR 1236041:1236054

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1219879:1219892	attL	NA	NA	NA	NA
AVJ64253.1\|1226391_1227372_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
AVJ64254.1\|1227417_1228416_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.2e-183	94.5
AVJ64255.1\|1228418_1229048_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
AVJ64256.1\|1229170_1229413_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
AVJ64257.1\|1229445_1229955_+	hypothetical protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
AVJ64258.1\|1229962_1230163_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
AVJ64259.1\|1230126_1230465_+	hypothetical protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
AVJ64260.1\|1230532_1230766_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
AVJ64261.1\|1230765_1230993_+	hypothetical protein	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
AVJ64262.1\|1230989_1231841_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
AVJ64263.1\|1231837_1234222_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.9
AVJ64264.1\|1234451_1234703_+	hypothetical protein	NA	NA	NA	NA
AVJ64265.1\|1234702_1236187_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
1236041:1236054	attR	NA	NA	NA	NA
AVJ64266.1\|1236283_1236622_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.8e-44	80.0
AVJ68089.1\|1236614_1236818_-	hypothetical protein	NA	NA	NA	NA
AVJ64267.1\|1236817_1237438_-	hypothetical protein	Q1MVF7	Enterobacteria_phage	1.0e-29	40.7
AVJ64268.1\|1237434_1237728_-	hypothetical protein	Q6UAT9	Klebsiella_phage	2.7e-44	86.6
AVJ68090.1\|1237727_1238195_-	hypothetical protein	A0A2R2Z312	Escherichia_phage	1.3e-37	51.7
AVJ64269.1\|1238488_1239133_-	hypothetical protein	Q1MVG0	Enterobacteria_phage	8.0e-110	79.3
AVJ64270.1\|1239129_1239321_-	hypothetical protein	NA	NA	NA	NA
AVJ64271.1\|1239304_1239715_-	hypothetical protein	A0A2P1MXC5	Escherichia_phage	4.3e-16	45.1
AVJ64272.1\|1239907_1240255_-	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	6.5e-50	82.6
AVJ64273.1\|1240374_1241160_-	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
AVJ64274.1\|1241156_1241924_-	primosomal protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
AVJ64275.1\|1241923_1242133_-	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
AVJ64276.1\|1242279_1242513_-	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
AVJ64277.1\|1242667_1243249_+	XRE family transcriptional regulator	Q858D7	Salmonella_phage	7.1e-65	64.3
AVJ64278.1\|1243615_1243915_+	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
AVJ64279.1\|1243911_1244733_+	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	1.8e-130	80.2
AVJ64280.1\|1244729_1245611_+	recombinase RecT	T1SBJ5	Salmonella_phage	8.9e-136	84.3
AVJ64281.1\|1245659_1245908_+	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	4.9e-31	76.8
AVJ64282.1\|1246017_1246311_+	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-32	71.1
AVJ64283.1\|1246303_1246462_+	DUF1317 domain-containing protein	T1SAR0	Salmonella_phage	1.1e-17	78.8
AVJ64284.1\|1246458_1247121_+	hypothetical protein	A0A059VF56	Pseudomonas_phage	1.2e-47	46.6
AVJ64285.1\|1247117_1247711_+	adenine methylase	T1SA14	Salmonella_phage	6.3e-109	91.9
AVJ64286.1\|1247707_1247950_+	hypothetical protein	NA	NA	NA	NA
AVJ64287.1\|1247892_1249143_-	DUF4102 domain-containing protein	A0A1X9TCT6	Enterobacter_phage	5.8e-205	84.4
AVJ64288.1\|1249334_1250912_-	GMP synthase (glutamine-hydrolyzing)	NA	NA	NA	NA
AVJ64289.1\|1250979_1252446_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7

DBSCAN-SWA_3

1323796 : 1432994

114

Salmonella_phage(60.0%)

portal,head,capsid,plate,holin,coat,tail,tRNA,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ64352.1\|1323796_1324534_-\|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	NA	NA	NA	NA
AVJ64353.1\|1324665_1325997_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	6.2e-48	31.9
AVJ64354.1\|1326042_1326426_-	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	4.0e-32	79.3
AVJ64355.1\|1326739_1327429_+	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	1.3e-57	53.0
AVJ64356.1\|1327486_1328572_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AVJ64357.1\|1328775_1329201_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	6.0e-13	40.2
AVJ64358.1\|1329270_1329969_+	DTW domain-containing protein	NA	NA	NA	NA
AVJ64359.1\|1330003_1332655_+	protein lysine acetyltransferase	NA	NA	NA	NA
AVJ64360.1\|1332775_1334131_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AVJ64361.1\|1334172_1334496_+	hypothetical protein	NA	NA	NA	NA
AVJ64362.1\|1334499_1335798_-	MFS transporter	Q6JIH2	Burkholderia_virus	3.1e-44	31.5
AVJ64363.1\|1341763_1344337_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	6.9e-128	35.4
AVJ64364.1\|1344466_1345198_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
AVJ64365.1\|1345194_1346175_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
AVJ64366.1\|1346306_1347044_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AVJ64367.1\|1347314_1347650_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
AVJ68092.1\|1347756_1347804_+	hypothetical protein	NA	NA	NA	NA
AVJ64368.1\|1347904_1349065_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
AVJ64369.1\|1349061_1349934_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
AVJ64370.1\|1349996_1351118_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AVJ64371.1\|1351127_1352198_-	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.8e-90	51.5
AVJ64372.1\|1352540_1353050_+	DUF4154 domain-containing protein	NA	NA	NA	NA
AVJ64373.1\|1353042_1354266_+	diguanylate cyclase	NA	NA	NA	NA
AVJ64374.1\|1354279_1354762_+	hypothetical protein	NA	NA	NA	NA
AVJ64375.1\|1354770_1356141_-	PepSY domain-containing protein	NA	NA	NA	NA
AVJ64376.1\|1356197_1356656_-	DUF2946 domain-containing protein	NA	NA	NA	NA
AVJ64377.1\|1356775_1357123_-	50S ribosomal protein L19	NA	NA	NA	NA
AVJ64378.1\|1357162_1357930_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AVJ64379.1\|1357961_1358510_-	ribosome maturation factor RimM	NA	NA	NA	NA
AVJ64380.1\|1358528_1358777_-	30S ribosomal protein S16	NA	NA	NA	NA
AVJ64381.1\|1359036_1360401_-	signal recognition particle protein	NA	NA	NA	NA
AVJ64382.1\|1360564_1361356_+	inner membrane protein YpjD	NA	NA	NA	NA
AVJ64383.1\|1361375_1362662_+	DUF21 domain-containing protein	NA	NA	NA	NA
AVJ64384.1\|1362781_1363372_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
AVJ64385.1\|1363496_1364375_+	NAD(+) kinase	NA	NA	NA	NA
AVJ64386.1\|1364461_1366123_+	DNA repair protein RecN	NA	NA	NA	NA
AVJ64387.1\|1366270_1366612_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AVJ64388.1\|1366678_1366969_-	RnfH family protein	NA	NA	NA	NA
AVJ64389.1\|1366958_1367435_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
AVJ64390.1\|1367545_1368028_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
AVJ64391.1\|1368631_1369009_+	hypothetical protein	NA	NA	NA	NA
AVJ64392.1\|1369036_1369255_-	levansucrase regulator	Q53ZE7	Salmonella_virus	1.9e-26	72.2
AVJ64393.1\|1369321_1370416_-	late control protein D	E5G6Q3	Salmonella_phage	2.4e-170	83.6
AVJ64394.1\|1370412_1370898_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
AVJ64395.1\|1370894_1373525_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	8.9e-115	41.9
AVJ64396.1\|1373517_1373637_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
AVJ64397.1\|1373651_1373951_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
AVJ64398.1\|1374003_1374519_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
AVJ64399.1\|1374528_1375701_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
AVJ64400.1\|1375849_1376923_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
AVJ64401.1\|1376974_1378093_-	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
AVJ64402.1\|1378102_1380052_-\|coat	spore coat protein CotH	Q6QI97	Burkholderia_phage	1.0e-06	38.9
AVJ64403.1\|1380053_1380725_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
AVJ64404.1\|1380717_1381626_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.9e-109	68.9
AVJ64405.1\|1381612_1381975_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
AVJ64406.1\|1381971_1382544_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
AVJ64407.1\|1382638_1383505_+	hypothetical protein	NA	NA	NA	NA
AVJ64408.1\|1383527_1383974_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
AVJ64409.1\|1383966_1384389_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
AVJ64410.1\|1384351_1384555_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	3.0e-23	77.6
AVJ64411.1\|1384484_1384913_-	hypothetical protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
AVJ64412.1\|1384909_1385293_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
AVJ64413.1\|1385297_1385807_-	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
AVJ68093.1\|1385787_1386003_-	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
AVJ64414.1\|1386006_1386210_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	9.8e-30	89.6
AVJ64415.1\|1386209_1386674_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
AVJ64416.1\|1386769_1387423_-	hypothetical protein	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
AVJ64417.1\|1387426_1388479_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
AVJ64418.1\|1388495_1389329_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
AVJ64419.1\|1389469_1391233_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
AVJ64420.1\|1391232_1392276_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
AVJ68094.1\|1392332_1392602_-	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
AVJ64421.1\|1393123_1394125_+	hypothetical protein	NA	NA	NA	NA
AVJ64422.1\|1394124_1395204_+	hypothetical protein	NA	NA	NA	NA
AVJ64423.1\|1395190_1395874_+	hypothetical protein	NA	NA	NA	NA
AVJ64424.1\|1395969_1396203_-	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
AVJ64425.1\|1396214_1396403_-	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
AVJ64426.1\|1396510_1397995_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AVJ64427.1\|1397994_1398246_-	hypothetical protein	NA	NA	NA	NA
AVJ68095.1\|1398398_1398656_+	lF-82	NA	NA	NA	NA
AVJ68096.1\|1398733_1399318_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	2.2e-90	88.6
AVJ64428.1\|1399314_1400790_+\|terminase	terminase	Q858H3	Salmonella_phage	6.4e-280	93.1
AVJ64429.1\|1400833_1401205_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	3.7e-59	91.9
AVJ64430.1\|1401254_1401497_+	hypothetical protein	NA	NA	NA	NA
AVJ64431.1\|1401958_1402165_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
AVJ64432.1\|1402179_1403862_+\|tail	phage tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	1.5e-264	84.4
AVJ64433.1\|1403858_1404155_+	hypothetical protein	T1SBI9	Salmonella_phage	1.2e-33	70.4
AVJ64434.1\|1404157_1404838_+	peptidase	G9L6C4	Escherichia_phage	6.1e-76	84.0
AVJ64435.1\|1404852_1405839_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	2.5e-179	94.2
AVJ64436.1\|1405892_1406330_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
AVJ64437.1\|1406340_1406682_+	hypothetical protein	G9L6C7	Escherichia_phage	2.4e-36	70.8
AVJ64438.1\|1406732_1407056_+	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
AVJ64439.1\|1407055_1407661_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	4.0e-87	77.0
AVJ64440.1\|1407660_1410138_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.4
AVJ64441.1\|1410137_1410602_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
AVJ64442.1\|1410601_1411141_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	8.0e-71	80.0
AVJ64443.1\|1411151_1413686_+	hypothetical protein	Q858G0	Salmonella_phage	0.0e+00	84.1
AVJ64444.1\|1413685_1415596_+	hypothetical protein	Q858F9	Salmonella_phage	5.4e-287	82.7
AVJ64445.1\|1415595_1418352_+	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	95.4
AVJ64446.1\|1418348_1418543_+	hypothetical protein	Q858F7	Salmonella_phage	6.5e-15	67.2
AVJ64447.1\|1418577_1418730_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	2.5e-14	83.7
AVJ64448.1\|1418828_1419125_-	hypothetical protein	T1SA06	Salmonella_phage	6.9e-24	63.9
AVJ64449.1\|1421952_1422216_+	hypothetical protein	NA	NA	NA	NA
AVJ64450.1\|1422256_1423390_-	hypothetical protein	NA	NA	NA	NA
AVJ68097.1\|1423378_1423465_+	ABC transporter	NA	NA	NA	NA
AVJ64451.1\|1423503_1424484_-\|transposase	IS5 family transposase ISKpn26	A0A077SK28	Escherichia_phage	1.0e-185	99.4
AVJ64452.1\|1425352_1426615_-\|transposase	IS1380 family transposase ISEc9	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
AVJ64453.1\|1427505_1427646_-	ABC transporter	NA	NA	NA	NA
AVJ64454.1\|1427723_1429040_+	right-handed parallel beta-helix repeat-containing protein	A0A0K2FI18	Enterobacter_phage	2.3e-34	32.3
AVJ64455.1\|1429126_1429531_+	hypothetical protein	T1SA79	Salmonella_phage	8.7e-54	81.1
AVJ64456.1\|1429517_1429823_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	2.7e-39	81.4
AVJ64457.1\|1429812_1430442_+	endolysin	Q858F0	Salmonella_phage	1.8e-90	76.9
AVJ64458.1\|1430438_1430939_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	1.3e-59	76.9
AVJ64459.1\|1431125_1432994_-	phosphatase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6

DBSCAN-SWA_4

1763191 : 1770097

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ68112.1\|1763191_1764055_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
AVJ64745.1\|1764065_1764839_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
AVJ68113.1\|1765080_1765974_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
AVJ64746.1\|1766219_1767581_-	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
AVJ64747.1\|1767899_1768622_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
AVJ64748.1\|1768618_1770097_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_5

1810630 : 1826376

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ64775.1\|1810630_1812037_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	3.6e-38	28.7
AVJ64776.1\|1812260_1813325_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.4e-105	54.7
AVJ64777.2\|1813338_1814208_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	5.7e-111	67.0
AVJ64778.1\|1814239_1815130_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
AVJ64779.1\|1815144_1815699_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
AVJ64780.1\|1815878_1817045_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	7.0e-112	54.7
AVJ64781.1\|1817993_1818998_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	4.0e-31	29.2
AVJ64782.1\|1818953_1819235_+	hypothetical protein	NA	NA	NA	NA
AVJ64783.2\|1819837_1820902_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.4e-105	55.0
AVJ64784.1\|1820915_1821785_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	5.7e-111	67.0
AVJ64785.1\|1821816_1822707_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
AVJ64786.1\|1822721_1823276_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
AVJ64787.1\|1823362_1824193_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
AVJ64788.1\|1824221_1825055_+	ABC transporter permease	NA	NA	NA	NA
AVJ64789.1\|1825044_1826376_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.9e-15	29.1

DBSCAN-SWA_6

2806377 : 2817264

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ65703.1\|2806377_2809485_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
AVJ65704.1\|2809539_2810805_+	MFS transporter	NA	NA	NA	NA
AVJ65705.1\|2810835_2811924_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
AVJ65706.1\|2812010_2812271_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
AVJ65707.1\|2812568_2813429_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
AVJ65708.1\|2813449_2814211_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AVJ65709.1\|2814471_2815374_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
AVJ65710.1\|2815385_2816651_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
AVJ65711.1\|2816643_2817264_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_7

3010529 : 3085136

uncultured_Caudovirales_phage(32.69%)

lysis,head,protease,plate,tail,transposase,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ65895.1\|3010529_3011615_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AVJ65896.1\|3011578_3013333_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AVJ65897.1\|3015004_3018430_-	type VI secretion protein VasK	NA	NA	NA	NA
AVJ65898.1\|3018413_3019553_-	hypothetical protein	NA	NA	NA	NA
AVJ65899.1\|3019549_3019807_-	PAAR domain-containing protein	NA	NA	NA	NA
AVJ65900.1\|3019851_3022269_-	DUF2235 domain-containing protein	NA	NA	NA	NA
AVJ65901.1\|3022256_3022787_-	DUF3304 domain-containing protein	NA	NA	NA	NA
AVJ65902.1\|3022854_3023385_-	DUF3304 domain-containing protein	NA	NA	NA	NA
AVJ65903.1\|3023453_3023984_-	DUF3304 domain-containing protein	NA	NA	NA	NA
AVJ65904.1\|3024051_3024582_-	DUF3304 domain-containing protein	NA	NA	NA	NA
AVJ65905.1\|3024650_3025181_-	DUF3304 domain-containing protein	NA	NA	NA	NA
AVJ65906.1\|3025244_3026024_-	DUF4123 domain-containing protein	NA	NA	NA	NA
AVJ65907.1\|3026024_3028403_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	9.2e-18	33.8
AVJ65908.1\|3028395_3031050_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.5e-96	33.4
AVJ65909.1\|3031314_3031806_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AVJ65910.1\|3031810_3033517_-	OmpA family protein	NA	NA	NA	NA
AVJ65911.1\|3033513_3034203_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
AVJ68164.1\|3034199_3035540_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AVJ65912.1\|3035552_3037097_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AVJ65913.1\|3037139_3037631_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AVJ65914.1\|3038100_3039081_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
AVJ65915.1\|3039119_3039263_-	ABC transporter	NA	NA	NA	NA
AVJ65916.1\|3039676_3039925_+	damage-inducible protein DinI	S5MQI1	Escherichia_phage	1.4e-25	70.4
AVJ65917.1\|3040147_3040432_-	hypothetical protein	NA	NA	NA	NA
AVJ65918.1\|3040509_3041994_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AVJ65919.1\|3041993_3042245_-	hypothetical protein	NA	NA	NA	NA
AVJ65920.1\|3042446_3042656_-	hypothetical protein	NA	NA	NA	NA
AVJ65921.1\|3042652_3043384_-	hypothetical protein	NA	NA	NA	NA
AVJ68165.1\|3043394_3044123_-	hypothetical protein	NA	NA	NA	NA
AVJ65922.1\|3046473_3046671_-	hypothetical protein	NA	NA	NA	NA
AVJ65923.1\|3046670_3047537_-	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.9e-34	64.5
AVJ65924.1\|3047536_3048310_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
AVJ65925.1\|3048306_3049503_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
AVJ65926.1\|3049502_3049856_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
AVJ65927.1\|3049857_3050511_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
AVJ65928.1\|3050564_3051131_-	hypothetical protein	NA	NA	NA	NA
AVJ65929.1\|3051167_3051353_+	hypothetical protein	NA	NA	NA	NA
AVJ65930.1\|3051405_3051747_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
AVJ65931.1\|3051746_3052769_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
AVJ65932.1\|3052771_3053074_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	55.2
AVJ65933.1\|3053074_3053674_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
AVJ65934.1\|3053673_3055677_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
AVJ65935.1\|3055666_3055819_-	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
AVJ65936.1\|3055854_3056280_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
AVJ65937.1\|3056283_3056724_-	DUF3277 domain-containing protein	A0A0M5M1K6	Salmonella_phage	3.3e-62	80.1
AVJ65938.1\|3056734_3057880_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
AVJ65939.1\|3057883_3058324_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
AVJ65940.1\|3058418_3058805_-\|head,tail	head-tail adaptor	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
AVJ65941.1\|3058804_3059311_-	hypothetical protein	NA	NA	NA	NA
AVJ65942.1\|3059307_3059727_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
AVJ65943.1\|3059695_3059977_-	hypothetical protein	NA	NA	NA	NA
AVJ65944.1\|3060016_3060958_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
AVJ65945.1\|3060969_3061464_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
AVJ65946.1\|3061467_3062670_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
AVJ68166.1\|3062721_3063270_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
AVJ65947.1\|3063325_3064777_-	hypothetical protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
AVJ65948.1\|3065014_3066415_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
AVJ65949.1\|3066365_3067118_-	hypothetical protein	A0A077KBY7	Edwardsiella_phage	4.0e-12	66.0
AVJ65950.1\|3067219_3067540_-	negative regulator GrlR	NA	NA	NA	NA
AVJ65951.1\|3067774_3068164_-	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
AVJ65952.1\|3068160_3068691_-	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
AVJ65953.1\|3068693_3068942_-\|lysis	lysis protein	NA	NA	NA	NA
AVJ65954.1\|3069347_3070130_-	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
AVJ65955.1\|3070126_3070603_-	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
AVJ65956.1\|3070599_3071562_-	DNA primase	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
AVJ65957.1\|3071563_3073222_-	helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
AVJ65958.1\|3073530_3073824_-	hypothetical protein	A0A286S2B5	Klebsiella_phage	2.8e-38	97.6
AVJ65959.1\|3073798_3074020_-	XRE family transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
AVJ65960.1\|3074117_3074786_+	LexA family transcriptional repressor	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
AVJ65961.1\|3074956_3075271_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
AVJ65962.1\|3075263_3075452_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
AVJ65963.1\|3075621_3075987_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
AVJ65964.1\|3075979_3076234_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
AVJ65965.1\|3076420_3076846_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
AVJ65966.1\|3076842_3077037_+	hypothetical protein	NA	NA	NA	NA
AVJ65967.1\|3077033_3077861_+\|protease	serine protease	Q8W654	Enterobacteria_phage	5.5e-111	84.0
AVJ65968.1\|3077965_3078484_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
AVJ65969.1\|3078489_3079200_+	DNA-binding protein	A0A286S260	Klebsiella_phage	2.1e-111	88.3
AVJ65970.1\|3079189_3079414_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
AVJ65971.1\|3079410_3079623_+	hypothetical protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
AVJ65972.1\|3079619_3080099_+	hypothetical protein	NA	NA	NA	NA
AVJ65973.1\|3080277_3080520_+	AlpA family transcriptional regulator	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
AVJ65974.1\|3080500_3081682_-	DUF4102 domain-containing protein	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
AVJ65975.1\|3081878_3082427_+\|protease	protease	NA	NA	NA	NA
AVJ65976.1\|3082625_3084158_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
AVJ65977.1\|3084374_3085136_-	3-oxoacyl-ACP reductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5

DBSCAN-SWA_8

3118069 : 3172261

Enterobacteria_phage(33.33%)

protease,transposase,holin,integrase

attL 3117851:3117866|attR 3147619:3147634

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3117851:3117866	attL	NA	NA	NA	NA
AVJ66008.1\|3118069_3118741_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6
AVJ68169.1\|3118927_3119755_+	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	8.4e-19	30.2
AVJ66009.1\|3119830_3121096_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	9.6e-208	82.7
AVJ66010.1\|3121097_3121517_-	translesion error-prone DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
AVJ66011.1\|3121596_3123081_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AVJ66012.1\|3123080_3123332_-	hypothetical protein	NA	NA	NA	NA
AVJ66013.1\|3123978_3124401_-	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
AVJ66014.1\|3124993_3125698_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ66015.1\|3126313_3126661_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AVJ68170.1\|3126824_3127616_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
AVJ66016.1\|3128597_3129302_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVJ66017.1\|3129338_3129626_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	4.4e-36	95.4
AVJ66018.1\|3129622_3130162_-	hypothetical protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.9
AVJ66019.1\|3130158_3130470_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	3.8e-49	100.0
AVJ68171.1\|3131107_3131797_-	antiterminator	I6PDF8	Cronobacter_phage	2.1e-55	53.1
AVJ66020.1\|3131796_3131937_-	YlcG family protein	NA	NA	NA	NA
AVJ66021.1\|3131933_3132572_-	hypothetical protein	H6WRY9	Salmonella_phage	3.2e-74	69.8
AVJ66022.1\|3132564_3133233_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	1.4e-104	78.7
AVJ66023.1\|3133229_3133397_-	NinE family protein	K7P7K0	Enterobacteria_phage	4.6e-09	62.5
AVJ66024.1\|3133377_3133845_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.4e-33	45.8
AVJ66025.1\|3135430_3136411_+\|transposase	IS5 family transposase ISKpn26	A0A077SK28	Escherichia_phage	1.0e-185	99.4
AVJ68172.1\|3136449_3136536_-	ABC transporter	NA	NA	NA	NA
AVJ66026.1\|3136801_3137047_-	hypothetical protein	NA	NA	NA	NA
AVJ66027.1\|3137102_3137405_-	MarR family transcriptional regulator	NA	NA	NA	NA
AVJ66028.1\|3137401_3138250_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.1e-88	60.1
AVJ66029.1\|3138246_3139107_-	replication protein	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
AVJ66030.1\|3139192_3139414_-	transcriptional regulator	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
AVJ66031.1\|3139454_3139682_-	transcriptional regulator	Q76H55	Enterobacteria_phage	1.4e-24	77.1
AVJ68173.1\|3139793_3140492_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
AVJ66032.1\|3140514_3140634_+	hypothetical protein	NA	NA	NA	NA
AVJ66033.1\|3140779_3141856_+	ParA family protein	H2BD62	Pseudomonas_phage	9.1e-58	37.9
AVJ66034.1\|3141937_3142141_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.9e-18	71.6
AVJ66035.1\|3142569_3142764_+	hypothetical protein	NA	NA	NA	NA
AVJ66036.1\|3142852_3143137_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
AVJ66037.1\|3143152_3143998_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.2
AVJ66038.1\|3144283_3144964_+	exonuclease	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
AVJ66039.1\|3144960_3145389_+	regulator	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
AVJ66040.1\|3145385_3146048_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
AVJ66041.1\|3146044_3146359_+	hypothetical protein	K7PM28	Enterobacteria_phage	1.6e-10	50.8
AVJ68174.1\|3146255_3147443_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	1.1e-120	52.4
AVJ66042.1\|3147619_3148510_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
3147619:3147634	attR	NA	NA	NA	NA
AVJ66043.1\|3148509_3149502_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
AVJ66044.1\|3149503_3150313_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
AVJ66045.1\|3150357_3151788_-	cytosine permease	NA	NA	NA	NA
AVJ66046.1\|3151984_3152527_+	hutD family protein	NA	NA	NA	NA
AVJ66047.1\|3152725_3153514_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
AVJ66048.1\|3153704_3154862_+	hypothetical protein	NA	NA	NA	NA
AVJ66049.1\|3154943_3156878_+	exoribonuclease 2	A0A2H4UVB7	Bodo_saltans_virus	7.0e-08	24.6
AVJ66050.1\|3157036_3157216_+	hypothetical protein	NA	NA	NA	NA
AVJ66051.1\|3157287_3158037_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
AVJ66052.1\|3158309_3158531_+	osmotically-inducible lipoprotein OsmB	NA	NA	NA	NA
AVJ66053.1\|3158662_3158989_-	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
AVJ66054.1\|3158988_3159726_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
AVJ66055.1\|3159917_3161087_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
AVJ66056.1\|3161093_3161402_-	DUF1049 domain-containing protein	NA	NA	NA	NA
AVJ66057.1\|3161537_3162305_-	phosphatidylglycerophosphatase B	NA	NA	NA	NA
AVJ66058.1\|3162468_3163071_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.2e-43	49.5
AVJ66059.1\|3163117_3165790_-	aconitate hydratase AcnA	NA	NA	NA	NA
AVJ66060.1\|3165800_3166007_-	hypothetical protein	NA	NA	NA	NA
AVJ66061.1\|3166178_3166346_-	YmiA family putative membrane protein	NA	NA	NA	NA
AVJ66062.1\|3166591_3167566_-	LysR family transcriptional regulator CysB	NA	NA	NA	NA
AVJ66063.1\|3167911_3170509_-	type I DNA topoisomerase	A0A2K9L5F8	Tupanvirus	2.9e-89	35.6
AVJ66064.1\|3170915_3171167_+	hypothetical protein	NA	NA	NA	NA
AVJ66065.1\|3171214_3172261_-\|protease	protease SohB	NA	NA	NA	NA

DBSCAN-SWA_9

3277985 : 3367064

Klebsiella_phage(44.44%)

portal,head,capsid,holin,integrase,tail,tRNA,terminase,transposase

attL 3304788:3304802|attR 3364875:3364889

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ66165.1\|3277985_3278486_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
AVJ66166.1\|3278602_3279049_+	DUF441 domain-containing protein	NA	NA	NA	NA
AVJ68178.1\|3279032_3279824_-	AraC family transcriptional regulator	NA	NA	NA	NA
AVJ66167.1\|3279925_3281110_+	cyanate MFS transporter	NA	NA	NA	NA
AVJ66168.1\|3281141_3281834_-	hypothetical protein	NA	NA	NA	NA
AVJ66169.1\|3281979_3282489_+	DUF523 domain-containing protein	NA	NA	NA	NA
AVJ66170.1\|3282475_3282832_+	DUF488 domain-containing protein	NA	NA	NA	NA
AVJ66171.1\|3282821_3283061_-	DUF333 domain-containing protein	NA	NA	NA	NA
AVJ66172.1\|3283361_3284375_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-12	29.0
AVJ66173.1\|3284432_3284534_+	hypothetical protein	NA	NA	NA	NA
AVJ68179.1\|3284533_3284608_+	hypothetical protein	NA	NA	NA	NA
AVJ66174.1\|3284725_3284851_+	hypothetical protein	NA	NA	NA	NA
AVJ66175.1\|3284910_3285174_-	DUF2534 domain-containing protein	NA	NA	NA	NA
AVJ66176.1\|3285304_3285943_-	leucine efflux protein	NA	NA	NA	NA
AVJ66177.1\|3286032_3286947_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
AVJ66178.1\|3287162_3287354_+	hypothetical protein	NA	NA	NA	NA
AVJ66179.1\|3287608_3288652_-	type II asparaginase	NA	NA	NA	NA
AVJ66180.1\|3288954_3290163_+	phosphodiesterase	NA	NA	NA	NA
AVJ66181.1\|3290236_3292021_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
AVJ66182.1\|3292027_3292918_-	LysR family transcriptional regulator	NA	NA	NA	NA
AVJ66183.1\|3293038_3294547_+	3,4-dihydroxybenzoate decarboxylase	NA	NA	NA	NA
AVJ66184.1\|3294857_3295544_-	diguanylate phosphodiesterase	NA	NA	NA	NA
AVJ66185.1\|3295941_3296121_-	hypothetical protein	NA	NA	NA	NA
AVJ66186.1\|3296160_3296793_-	DNA-binding protein	NA	NA	NA	NA
AVJ66187.1\|3297359_3297557_+	hypothetical protein	NA	NA	NA	NA
AVJ66188.1\|3297672_3298683_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
AVJ66189.1\|3298679_3300086_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
AVJ66190.1\|3300141_3301029_-	Mn-containing catalase	NA	NA	NA	NA
AVJ66191.1\|3301045_3301552_-	ferritin-like domain-containing protein	NA	NA	NA	NA
AVJ66192.1\|3301578_3302073_-	ferritin-like domain-containing protein	NA	NA	NA	NA
AVJ66193.1\|3302163_3302349_-	stress-induced acidophilic repeat motif-containing protein	NA	NA	NA	NA
AVJ66194.1\|3302970_3304164_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
AVJ66195.1\|3304276_3304504_+	DUF1272 domain-containing protein	NA	NA	NA	NA
3304788:3304802	attL	NA	NA	NA	NA
AVJ66196.1\|3304940_3305264_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AVJ66197.1\|3305256_3305649_+	amino acid-binding protein	NA	NA	NA	NA
AVJ66198.1\|3305645_3306359_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AVJ66199.1\|3306631_3306784_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
AVJ66200.1\|3306938_3308435_-\|tail	phage tail protein	A0A0P0IDN1	Klebsiella_phage	8.3e-126	64.0
AVJ66201.1\|3308503_3321208_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	47.1
AVJ66202.1\|3321270_3321864_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	8.0e-80	76.6
AVJ66203.1\|3321890_3322313_-	hypothetical protein	J9Q806	Salmonella_phage	5.9e-29	50.0
AVJ66204.1\|3322354_3323065_-	peptidase P60	Q6UAW4	Klebsiella_phage	1.9e-136	90.3
AVJ66205.1\|3323066_3323822_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	4.6e-125	80.5
AVJ66206.1\|3323818_3324157_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-57	88.4
AVJ66207.1\|3324156_3327492_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	88.3
AVJ66208.1\|3327491_3327710_-	hypothetical protein	Q6UAW9	Klebsiella_phage	5.4e-34	90.5
AVJ66209.1\|3327724_3328090_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
AVJ66210.1\|3328147_3328609_-\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
AVJ66211.1\|3328640_3329042_-	hypothetical protein	Q6UAX1	Klebsiella_phage	2.3e-62	94.0
AVJ66212.1\|3329038_3329428_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
AVJ66213.1\|3329408_3329747_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	2.8e-53	90.2
AVJ66214.1\|3329743_3330061_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
AVJ66215.1\|3330041_3330302_-	hypothetical protein	Q6UAX5	Klebsiella_phage	7.4e-22	60.5
AVJ66216.1\|3330360_3331647_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	9.8e-216	89.0
AVJ66217.1\|3331724_3332645_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	9.6e-149	88.2
AVJ66218.1\|3332681_3333941_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	1.8e-222	89.8
AVJ66219.1\|3333940_3334120_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
AVJ66220.1\|3334113_3335835_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.5e-190	57.4
AVJ66221.1\|3335834_3336269_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
AVJ66222.1\|3336517_3336949_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.6
AVJ66223.1\|3336945_3337269_-	hypothetical protein	NA	NA	NA	NA
AVJ66224.1\|3337220_3337583_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
AVJ66225.1\|3337909_3338134_+	hypothetical protein	NA	NA	NA	NA
AVJ66226.1\|3338172_3338625_-	hypothetical protein	NA	NA	NA	NA
AVJ66227.1\|3339559_3339910_-	hypothetical protein	R9TPM9	Aeromonas_phage	7.9e-11	38.1
AVJ66228.1\|3339906_3340404_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.1e-77	84.6
AVJ66229.1\|3340403_3340619_-\|holin	holin	A5LH82	Enterobacteria_phage	2.7e-30	88.7
AVJ66230.1\|3342870_3343473_-	hypothetical protein	H9C175	Pectobacterium_phage	1.1e-76	68.6
AVJ66231.1\|3343489_3344521_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-96	49.6
AVJ66232.1\|3344520_3344724_-	hypothetical protein	NA	NA	NA	NA
AVJ66233.1\|3344720_3345113_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	8.0e-12	36.6
AVJ66234.1\|3345153_3345444_-	hypothetical protein	H6WRY6	Salmonella_phage	8.0e-17	56.9
AVJ66235.1\|3345455_3345689_-	DinI family protein	K7PM44	Enterobacteria_phage	3.7e-25	71.1
AVJ66236.1\|3345767_3347252_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AVJ66237.1\|3347251_3347503_-	hypothetical protein	NA	NA	NA	NA
AVJ66238.1\|3348092_3349454_-	dGTPase	NA	NA	NA	NA
AVJ66239.1\|3349627_3350341_-	hypothetical protein	NA	NA	NA	NA
AVJ68180.1\|3350692_3351562_+	hypothetical protein	NA	NA	NA	NA
AVJ66240.1\|3351650_3353042_+	hypothetical protein	NA	NA	NA	NA
AVJ66241.1\|3353390_3353831_-	hypothetical protein	NA	NA	NA	NA
AVJ66242.1\|3353844_3354309_-	replication protein	A0A0U2JGJ0	Escherichia_phage	4.1e-63	72.2
AVJ68181.1\|3354301_3355306_-	DNA-binding protein	A0A0U2RT81	Escherichia_phage	1.0e-31	40.0
AVJ66243.1\|3355365_3355920_-	hypothetical protein	NA	NA	NA	NA
AVJ66244.1\|3355922_3356147_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.3e-19	62.5
AVJ66245.1\|3356235_3356673_+	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	1.3e-39	62.2
AVJ66246.1\|3356994_3357309_-	hypothetical protein	NA	NA	NA	NA
AVJ66247.1\|3357471_3357690_+	hypothetical protein	NA	NA	NA	NA
AVJ66248.1\|3357699_3357894_+	DUF1482 domain-containing protein	NA	NA	NA	NA
AVJ66249.1\|3357936_3358281_+	transcriptional regulator	NA	NA	NA	NA
AVJ66250.1\|3358422_3360561_+	exonuclease	S4TNL0	Salmonella_phage	5.6e-99	42.7
AVJ66251.1\|3360613_3360859_+	excisionase	NA	NA	NA	NA
AVJ68182.1\|3361471_3361630_+	ABC transporter	NA	NA	NA	NA
AVJ66252.1\|3361668_3362649_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
AVJ66253.1\|3362735_3363167_+\|integrase	integrase	O21925	Phage_21	6.9e-49	65.2
AVJ66254.1\|3363284_3364535_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
AVJ66255.1\|3364775_3365426_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3364875:3364889	attR	NA	NA	NA	NA
AVJ66256.1\|3365442_3365901_+	NUDIX hydrolase	NA	NA	NA	NA
AVJ68183.1\|3365957_3367064_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_10

3583043 : 3675994

Salmonella_phage(56.9%)

portal,head,protease,capsid,plate,integrase,tail,tRNA

attL 3638569:3638587|attR 3676069:3676087

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ66450.1\|3583043_3584336_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
AVJ66451.1\|3584426_3585770_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.3e-81	40.8
AVJ66452.1\|3585778_3586390_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
AVJ66453.1\|3586512_3590766_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
AVJ66454.1\|3590901_3591396_-	leucine-responsive regulatory protein	NA	NA	NA	NA
AVJ66455.1\|3591928_3592897_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.2e-62	44.0
AVJ66456.1\|3593011_3594778_+	thiol reductant ABC exporter subunit CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
AVJ66457.1\|3594778_3596500_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
AVJ66458.1\|3596544_3597246_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AVJ66459.1\|3597599_3597818_+	translation initiation factor IF-1	NA	NA	NA	NA
AVJ66460.1\|3597938_3600218_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
AVJ66461.1\|3600248_3600566_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AVJ66462.1\|3600891_3601113_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AVJ66463.1\|3601067_3601250_-	hypothetical protein	NA	NA	NA	NA
AVJ66464.1\|3601189_3603130_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
AVJ66465.1\|3603126_3604242_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
AVJ66466.1\|3604388_3606047_-	ATP-dependent endonuclease	NA	NA	NA	NA
AVJ66467.1\|3606466_3607162_+	aquaporin Z	NA	NA	NA	NA
AVJ66468.1\|3607277_3608177_+	lysine exporter LysO family protein	NA	NA	NA	NA
AVJ68192.1\|3608320_3609973_+	hydroxylamine reductase	NA	NA	NA	NA
AVJ66469.1\|3609983_3610952_+	NADH oxidoreductase	NA	NA	NA	NA
AVJ66470.1\|3610902_3611106_+	hypothetical protein	NA	NA	NA	NA
AVJ66471.1\|3611163_3611598_-	DoxX family protein	NA	NA	NA	NA
AVJ68193.1\|3611749_3613468_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
AVJ66472.1\|3613506_3614508_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
AVJ66473.1\|3614518_3615961_+	DUF2867 domain-containing protein	NA	NA	NA	NA
AVJ66474.1\|3616048_3617062_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AVJ66475.1\|3617058_3617889_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
AVJ66476.1\|3617920_3619060_-	GGDEF domain-containing protein	NA	NA	NA	NA
AVJ66477.1\|3619112_3619292_+	hypothetical protein	NA	NA	NA	NA
AVJ66478.1\|3619937_3620453_+	lipoprotein	NA	NA	NA	NA
AVJ66479.1\|3620679_3621408_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
AVJ68194.1\|3621428_3622160_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
AVJ66480.1\|3622166_3622883_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
AVJ66481.1\|3622882_3623551_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
AVJ66482.1\|3623734_3624466_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
AVJ66483.1\|3624508_3625981_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
AVJ66484.1\|3625977_3626694_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.1e-34	36.9
AVJ66485.1\|3626772_3627900_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
AVJ66486.1\|3627941_3628430_-	DUF2593 domain-containing protein	NA	NA	NA	NA
AVJ66487.1\|3628487_3629333_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
AVJ66488.1\|3629329_3630283_-	putrescine ABC transporter permease	NA	NA	NA	NA
AVJ68195.1\|3630293_3631427_-	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-30	34.9
AVJ66489.1\|3631590_3632703_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
AVJ66490.1\|3633051_3633531_-	YbjN domain-containing protein	NA	NA	NA	NA
AVJ66491.1\|3633619_3634522_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
AVJ66492.1\|3635343_3635631_-	hypothetical protein	NA	NA	NA	NA
AVJ66493.1\|3635833_3636097_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
AVJ66494.1\|3636103_3636487_-	hypothetical protein	NA	NA	NA	NA
AVJ68196.1\|3636753_3638439_+	transporter	NA	NA	NA	NA
3638569:3638587	attL	NA	NA	NA	NA
AVJ66495.1\|3638658_3638877_-	transcriptional regulator	Q53ZE7	Salmonella_virus	7.5e-20	69.0
AVJ66496.1\|3638968_3640069_-	late control protein D	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
AVJ66497.1\|3640065_3640551_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
AVJ66498.1\|3640547_3643175_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.6e-117	42.0
AVJ66499.1\|3643167_3643287_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
AVJ66500.1\|3643301_3643601_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
AVJ66501.1\|3643653_3644169_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
AVJ66502.1\|3644178_3645351_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
AVJ66503.1\|3645489_3646566_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
AVJ66504.1\|3646595_3646799_-	hypothetical protein	NA	NA	NA	NA
AVJ66505.1\|3646795_3647527_-	hypothetical protein	NA	NA	NA	NA
AVJ66506.1\|3647530_3650482_-	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
AVJ66507.1\|3650483_3651083_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
AVJ66508.1\|3651075_3651984_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
AVJ66509.1\|3651970_3652333_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	4.9e-48	83.9
AVJ66510.1\|3652329_3652902_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
AVJ66511.1\|3652996_3653689_+	hypothetical protein	NA	NA	NA	NA
AVJ66512.1\|3653685_3654132_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
AVJ66513.1\|3654124_3654556_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
AVJ66514.1\|3654651_3655080_-	hypothetical protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
AVJ66515.1\|3655076_3655460_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
AVJ66516.1\|3655464_3655974_-	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
AVJ66517.1\|3655954_3656170_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
AVJ66518.1\|3656173_3656377_-\|tail	phage tail protein	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
AVJ66519.1\|3656376_3656841_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
AVJ66520.1\|3656936_3657587_-	hypothetical protein	E5G6M7	Salmonella_phage	8.7e-112	96.3
AVJ66521.1\|3657590_3658649_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
AVJ66522.1\|3658665_3659499_-\|capsid	capsid protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
AVJ66523.1\|3659641_3661408_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
AVJ66524.1\|3661407_3662433_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
AVJ66525.1\|3662494_3664237_-	hypothetical protein	NA	NA	NA	NA
AVJ66526.1\|3664512_3665190_-	hypothetical protein	NA	NA	NA	NA
AVJ66527.1\|3665304_3665610_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
AVJ68197.1\|3665548_3665737_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
AVJ66528.1\|3665890_3668305_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
AVJ66529.1\|3668301_3669159_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
AVJ66530.1\|3669155_3669383_-	hypothetical protein	E5G6L7	Salmonella_phage	6.0e-36	98.7
AVJ66531.1\|3669382_3669616_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
AVJ66532.1\|3669683_3670025_-	hypothetical protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
AVJ66533.1\|3669988_3670189_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
AVJ66534.1\|3670196_3670706_-	hypothetical protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
AVJ66535.1\|3670738_3670960_-	regulator	NA	NA	NA	NA
AVJ66536.1\|3671105_3671984_+	Repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
AVJ66537.1\|3671995_3672940_+	hypothetical protein	NA	NA	NA	NA
AVJ66538.1\|3673038_3674523_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
AVJ66539.1\|3674522_3674774_-	hypothetical protein	NA	NA	NA	NA
AVJ66540.1\|3674941_3675994_+\|integrase	integrase	A0A218M4I3	Erwinia_phage	1.0e-106	57.0
3676069:3676087	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4255798 : 4267451

Enterobacteria_phage(70.0%)

integrase

attL 4256248:4256262|attR 4279304:4279318

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ67065.1\|4255798_4256902_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
4256248:4256262	attL	NA	NA	NA	NA
AVJ67066.1\|4256912_4258166_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
AVJ67067.1\|4258518_4259709_+\|integrase	integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
AVJ67068.1\|4259696_4260647_+	cobyrinic acid a,c-diamide synthase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
AVJ67069.1\|4260646_4261072_+	hypothetical protein	NA	NA	NA	NA
AVJ67070.1\|4261639_4262206_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
AVJ67071.1\|4262223_4262469_-	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
AVJ67072.1\|4262465_4263203_-	glycoprotein 3	Q7M2A2	Enterobacteria_phage	1.9e-70	59.4
AVJ67073.1\|4263744_4264011_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
AVJ67074.1\|4264007_4264565_+	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
AVJ67075.1\|4264561_4264789_+	hypothetical protein	NA	NA	NA	NA
AVJ67076.1\|4264785_4265106_+	hypothetical protein	NA	NA	NA	NA
AVJ67077.1\|4265117_4267451_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
4279304:4279318	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4735688 : 4745213

Enterobacteria_phage(83.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVJ67484.1\|4735688_4738022_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
AVJ67485.1\|4738036_4738357_-	hypothetical protein	NA	NA	NA	NA
AVJ67486.1\|4738353_4738581_-	hypothetical protein	NA	NA	NA	NA
AVJ67487.1\|4738577_4739126_-	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
AVJ67488.1\|4739949_4740687_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
AVJ67489.1\|4740683_4740929_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
AVJ67490.1\|4740946_4741513_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
AVJ67491.1\|4742253_4743333_+	hypothetical protein	NA	NA	NA	NA
AVJ67492.1\|4743333_4743870_+	hypothetical protein	NA	NA	NA	NA
AVJ67493.1\|4744232_4745213_+\|transposase	IS5 family transposase ISKpn26	A0A077SK28	Escherichia_phage	1.0e-185	99.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027067

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP027068

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection