CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP023313	Caulobacter vibrioides strain CB2 chromosome, complete genome	1 crisprs	csa3,WYL,DEDDh,DinG,cas3	1	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP023313_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023313_3

3061875-3061954

Orphan

Consensus_repeat	Method
CCTCCCCCTCTGGGGGGAGGATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023313_3

>merge|CP023313|3|3061875-3061954|CRISPRCasFinder
CCTCCCCCTCTGGGGGGAGGATTTGGGACAGGCGTCCGCCGCTTCACCCAGAACAATCCTCCCCCTCTGGGGGGAGGATT

>CP023313|3|3|3061875-3061954|CRISPRCasFinder
CCTCCCCCTCTGGGGGGAGGATT	TGGGACAGGCGTCCGCCGCTTCACCCAGAACAAT
CCTCCCCCTCTGGGGGGAGGATT

Protein	Signature genes	Signature genes Name	Protein_function
CP023313.2\|ATC25688.1\|3065165_3065450_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371754
CP023313.2\|ATC25691.1\|3066410_3066692_-\|phage-gp6-like-head-tail-connector-protein	unknown	unknown	gnl\|CDD\|153446
CP023313.2\|ATC25684.1\|3063378_3063843_+\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
CP023313.2\|ATC25676.1\|3053441_3053759_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225753
CP023313.2\|ATC25674.1\|3049784_3051155_-\|hypothetical-protein	unknown	unknown	unknown
CP023313.2\|ATC25686.1\|3064486_3064993_-\|phage-tail-tape-measure-protein	unknown	unknown	unknown
CP023313.2\|ATC26794.1\|3057460_3059992_-\|host-specificity-protein	unknown	unknown	gnl\|CDD\|372631
CP023313.2\|ATC25682.1\|3061969_3062596_-\|DUF2163-domain-containing-protein	unknown	unknown	gnl\|CDD\|227736
CP023313.2\|ATC25675.1\|3052748_3053426_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP023313.2\|ATC26793.1\|3051315_3052707_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182754
CP023313.2\|ATC25677.1\|3053887_3054397_-\|hypothetical-protein	unknown	unknown	unknown
CP023313.2\|ATC25679.1\|3054598_3055906_-\|type-II-toxin-antitoxin-system-HipA-family-toxin	unknown	unknown	gnl\|CDD\|226080
CP023313.2\|ATC25683.1\|3062595_3063231_-\|TIGR02217-family-protein	unknown	unknown	gnl\|CDD\|227735
CP023313.2\|ATC25678.1\|3054384_3054567_-\|hypothetical-protein	unknown	unknown	unknown
CP023313.2\|ATC25690.1\|3066015_3066414_-\|DUF3168-domain-containing-protein	unknown	unknown	gnl\|CDD\|378648
CP023313.2\|ATC25687.1\|3064989_3065169_-\|phage-tail-assembly-chaperone	unknown	unknown	gnl\|CDD\|370556
CP023313.2\|ATC25680.1\|3055902_3056262_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|213767
CP023313.2\|ATC25689.1\|3065583_3066000_-\|phage-major-tail-protein,-TP901-1-family	unknown	unknown	gnl\|CDD\|227724
CP023313.2\|ATC25681.1\|3056424_3057372_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|223560
CP023313.2\|ATC25685.1\|3063993_3064407_-\|DUF4437-domain-containing-protein	unknown	unknown	gnl\|CDD\|380394

Protein	Function_ID	Function_description	E-value
CP023313.2\|ATC25688.1\|3065165_3065450_-\|hypothetical-protein	gnl\|CDD\|371754	pfam11836, Phage_TAC_11, Phage tail tube protein, GTA-gp10. This is a family of phage tail tube proteins.	1.1282e-05
CP023313.2\|ATC25691.1\|3066410_3066692_-\|phage-gp6-like-head-tail-connector-protein	gnl\|CDD\|153446	cd08054, gp6, Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins. The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.	3.66427e-14
CP023313.2\|ATC25684.1\|3063378_3063843_+\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	6.78533e-21
CP023313.2\|ATC26794.1\|3057460_3059992_-\|host-specificity-protein	gnl\|CDD\|372631	pfam13547, GTA_TIM, GTA TIM-barrel-like domain. This domain is found in the gene transfer agent protein. An unusual system of genetic exchange exists in the purple nonsulfur bacterium Rhodobacter capsulatus. DNA transmission is mediated by a small bacteriophage-like particle called the gene transfer agent (GTA) that transfers random 4.5-kb segments of the producing cell's genome to recipient cells, where allelic replacement occurs. The genes involved in this process appear to be found widely in bacteria. According to the SUPERFAMILY database this domain has a TIM barrel fold.	3.3435e-178
CP023313.2\|ATC25682.1\|3061969_3062596_-\|DUF2163-domain-containing-protein	gnl\|CDD\|227736	COG5449, COG5449, Uncharacterized conserved protein [Function unknown].	1.83831e-109
CP023313.2\|ATC25675.1\|3052748_3053426_-\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.66356e-87
CP023313.2\|ATC26793.1\|3051315_3052707_-\|sensor-histidine-kinase	gnl\|CDD\|182754	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ.	5.10565e-47
CP023313.2\|ATC25690.1\|3066015_3066414_-\|DUF3168-domain-containing-protein	gnl\|CDD\|378648	pfam11367, DUF3168, Protein of unknown function (DUF3168). This family of proteins has no known function but is likely to be a component of bacteriophage.	2.00145e-25
CP023313.2\|ATC25679.1\|3054598_3055906_-\|type-II-toxin-antitoxin-system-HipA-family-toxin	gnl\|CDD\|226080	COG3550, HipA, Toxin module HipA, protein kinase of phosphatidylinositol 3/4-kinase superfamily [General function prediction only].	3.95812e-107
CP023313.2\|ATC25681.1\|3056424_3057372_-\|J-domain-containing-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	1.13758e-71
CP023313.2\|ATC25676.1\|3053441_3053759_-\|hypothetical-protein	gnl\|CDD\|225753	COG3212, COG3212, Predicted membrane protein [Function unknown].	2.10348e-26
CP023313.2\|ATC25687.1\|3064989_3065169_-\|phage-tail-assembly-chaperone	gnl\|CDD\|370556	pfam09550, Phage_TAC_6, Phage tail assembly chaperone protein, TAC. This is a family of phage tail assembly chaperone proteins largely derived from the Rhodobacter species viral agent GTA (gene transfer agent) gp10.	1.21649e-08
CP023313.2\|ATC25680.1\|3055902_3056262_-\|transcriptional-regulator	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	1.83681e-06
CP023313.2\|ATC25689.1\|3065583_3066000_-\|phage-major-tail-protein,-TP901-1-family	gnl\|CDD\|227724	COG5437, COG5437, Predicted secreted protein [Function unknown].	1.58652e-64
CP023313.2\|ATC25683.1\|3062595_3063231_-\|TIGR02217-family-protein	gnl\|CDD\|227735	COG5448, COG5448, Uncharacterized conserved protein [Function unknown].	3.4789e-99
CP023313.2\|ATC25685.1\|3063993_3064407_-\|DUF4437-domain-containing-protein	gnl\|CDD\|380394	cd06989, cupin_DRT102, Arabidopsis thaliana DRT102 and related proteins, cupin domain. This family includes bacterial and eukaryotic proteins homologous to DNA-damage-repair/toleration protein DRT102 found in Arabidopsis thaliana. DRT102 may be involved in DNA repair from UV damage. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.64351e-14

>CP023313.2|ATC26794.1|3057460_3059992_-|host-specificity-protein
MVLHQAALAAQAGGVDGFIIGSELRALTTTRGPGGTYPAVTKLKTLAADVRAVVGPATKLGYAADWSEYFGHQPRDGSGHAVFHLDPLWADPNLDFVGVDWYPPVTDWREGEDHLDAMAGYDGPHDPAYLRAGLTGGADFDWFYAGGADRDAQVRTPITDGAHGEAWMFRPKDLLSWWSQPHHDRPGGVRSATPTAWVPRSKPIRLTEFGCPAVDKGSNSPNLFIDPKSSESFLPPYSSGERDDFGQRRYLEAVLAWLDEPSANPVSPLYGGPMIEAASAWCWDARPFPDFPARADVWSDGGAWLLGHWLTGRAGIAPLPELIQALGARAGVALDPGEAGGAVGGYVVDRPMRLRDALSPLTEAFALDPVERGDQVRMMSRTGRAVAAIEPDDLVLPEDGPAERETRTLDPAAEALRLRFLDAARDYQVGALIVRREAGEGTRDMDAPIVLSAAEAAAVARRMLDADAAARRTRIVRLSPSAALRFEAGDRVTLDAETWRIQRLDLDERPRANLAPVLRSQGVDAVIDWTPAPPREPASPPVLHVLDLPSDGALADDARPLVAAAAEPWRPLDVHAGAGVETLTVRARLAAPATLGLTLTDLAPASPHRLDRSARLDVRIEGASLSSAPLAAVLAGGNALAIRAPSGDWEVIAFQTAQLIAPDVWRLSGLLRGQRDGAASEGVIPAGAAVVLLDEAVVPISVAAFERGTTLMVRAAPAGGPPSGAGMTQISAVWTGRALRPLAPAHLRKRSIGGDLSVSWIRRARVGGDVWDGEVPLAEGVERYRVRVLDGAAVLREAEVETPGFTYTAAMRAADAPSSGARLEVVQGASLYGWGAPASTSLW
>CP023313.2|ATC25681.1|3056424_3057372_-|J-domain-containing-protein
MARDPYQELGVTRTASADEIRKAFRKLAKQYHPDANPGDKKAEERFKQVSAAFDIVGDAEKRKKFDLGQIDADGRETMRGFGGQPGNGPFNAGGFGQGGFHRSNEGPEIDLSDLFGGMFGGGGGGAGAGRGPFSGGAGGGFSAKGADVKARLDIDLEDAIKGGKKRVAFSDGRTIDVTIPTGAQEGQTLRLKGQGAPGRGGQGDALIELAIKPHPIYRREGEALVMDLPVSIPDAVLGGKVEAPTPDGNVMLAVPKGSNSGQTLRLKGRGMPDGKGKRGDLLARLVVTLPETVDQDLEKFAEAWRAQKPYTPKRK
>CP023313.2|ATC25680.1|3055902_3056262_-|transcriptional-regulator
MKFESLLSDEAVLAEMGQRLVAARLERRLTQAQLAQAAGVSKRTVERLEDGASAQLTNLVRCLRALDRLEGLERLLPETPANPLDLLKQAKTGRSRVRNARASGVAETGGAPWVWGDEK
>CP023313.2|ATC25679.1|3054598_3055906_-|type-II-toxin-antitoxin-system-HipA-family-toxin
MTTVAEVRLWGSRIGAVSLEDGAQTAVFAYEPGFIASGIQPAPLMMPLKAGVFSFPDLPPRSFHGLPGMLADALPDKYGHVLIDAWLATQGRSPESFNAVERLCYTGRRGMGALEFSPMAGPRRRVSSKIDIDALVTLASEVLTHRHDLRASFADADKADALRDILSVGTSAGGARAKAVIAWNPATNEVRSGQVEAGAGFGYWLLKFDGVSGNRDKELADPKGYGAVEHAYGQMAAAAGIDVAESRLLEEGGRRHFMSKRFDRLDGGGKLHMQSLAAIAHLDFNDPVANSYEQALFTMRRMGLPMAQLEEQFRRMVFNVLARNQDDHVKNIAFLMDRAGRWSLSPAFDITWSYNPDGEWTSRHQMSINGKRDGFDFADLEACAKTASISRGHVGRIFEEVRAAVMRWPTFADAAGVDERWRDQIGATLRLELRR
>CP023313.2|ATC25678.1|3054384_3054567_-|hypothetical-protein
MTPLNAKGRGAACGARGGAGQAQGAAGCLIGGLSTALIRRTAAPSEDRGAIGRRELSCSS
>CP023313.2|ATC25677.1|3053887_3054397_-|hypothetical-protein
MFVLMLCAALLVIVGCPETALGKGLRRWLVDWPAKVLAGLTPARLVLLLALLAVSTLVVVLFEVEGAILLGMALPEVAVWFMAFDVAAFIDLFAAIALAANGARLKGLGDRIKALPGQFGRGLVARVRRSGQGRQGGRRFRRPGSGATKSEDGDAGWSGAAQPGALAWA
>CP023313.2|ATC25676.1|3053441_3053759_-|hypothetical-protein
MKPIRALIVAAALAAVLPDAAFAQRRPDSLGADWRQQQDQARGGVQSGRLVPLSRVIEMIGRRVPGRVLDAGLEGDNYRVRWAAADGRRIDFIVDAQTGQILSGG
>CP023313.2|ATC25675.1|3052748_3053426_-|DNA-binding-response-regulator
MRILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQYLGENEPYDAVILDLGLPKVDGVSVLERWRRGNVTTPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALLRRSAGHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMIMHQGRVIGRTELVEHLYDQDFDRDSNTIEVFIGRLRKKLGADRIETVRGLGYRLAALPGEDAA
>CP023313.2|ATC26793.1|3051315_3052707_-|sensor-histidine-kinase
MIVPSHRSLVFRLVVAAGIWTLLVVAGAGVFVNTQFRDAQVRRFDQGLSILIDDMYANTSVEDGLVKAPFLTDIRATRAYSGRYWTIFDSTGDGSLRVIDRSRSLFDSDLMLPSAQLDRLIAAPGKTIYFDLRGPQDARLRAGGLLARLPGHATPVIFLVAEDRSPIDADTGRFVRITAFALLILSGGLILAVVVQVRFGLQPLFQLRREVAHVRRGKAERVDGRYPEELEPLAAELNALLAHNQEVVERQRTHVGNLAHALKTPLSVMLTEASQQPGQLAEVVTRQAQTMREQVDHHLRRARAAARSQTSGERTPVEPILDELAVTLERIFQDKADGRGVEIDWRCPEDLCFQGEKQDLMELAGNVMENAGKWCRGKIRVDAVRTGEARMTLTVDDDGPGLTPDERAQALKRGQRLDENAPGSGLGLSIVDELARAYGGSVQLGESPLGGLRVSLDLPCAES
>CP023313.2|ATC25674.1|3049784_3051155_-|hypothetical-protein
MTLVGSLDPARGIMAAIAAHKLQIIQTLVETAPDAALRSLELALAGAGSQGALASVRGLVEDETANRFVRNNVLAPIVPLCARRASSQVSFPAPVLSRLWRALKSVAAARVEEAAARCNPWDLEQGSPEVFDELCKLAAAGLRDPENAAFDSVRSLCDPEQLALCLQLSTLTRGCLPKLAEWVSRMSDERAAAARLAYRDACRISEDAGPLLLDILSAHLPDDWRIMRVISAVMDRPSDRYLASSEVSQFGERILTEIEETIALIESFSFADGEKAGRLAAQAAQKVQLQMVEIQQSVDIAKDGPWGKRLARQKQAMAKACELRMDQAEKELDKALPTRPISMLAKKGARGVAKLIEAPDEAMIRRAQSALAFVAELRACADKAGYGSSRTKVLEKLNARLDPYIEDVLHVARTGEGGDSAVAVKYLDIAASFIAYTRDDKTAEIVRRRAAAAIAA
>CP023313.2|ATC25682.1|3061969_3062596_-|DUF2163-domain-containing-protein
MRALPEGLDEARLCHVWILTRADGTRLGFTDHDQDLVVDGVTCRAGGGWSPGATENSVGYAPGQGAVLGVLDEAGIAEADLAAGLYDGARVEALRVDWSAPSRRVSLWTATIASVTREGEAFTATLAGPLAALERVAGRTFTRLCDARLGDVRCGITPAPGATCDKRWATCVGVFGNSVNFRGFPTSPGEDFLTLYPVEGERNDGGRR
>CP023313.2|ATC25683.1|3062595_3063231_-|TIGR02217-family-protein
MMSEFHEARLPARLAFGCTGGIERRTEVVSLASGHERRTSPWSQSRRRYLIATAPRPLDEIAELVAFFEARRGRLHGFRFRDPADFKSCAPSVQPAAGDQAIGTGDGVRKAFQLRKTYGAGGEAVARTITKPVAGTVTVAVAGVVLAPGAFAVDVTTGLITLNTAPPAGAAVTAGFAFDTPVRFDLDRLDVTLEGFAAARVTACSLVEVLV
>CP023313.2|ATC25684.1|3063378_3063843_+|DUF805-domain-containing-protein
MDWKTLFLSPEGRIGRQSFWVGWLILLGVNVVASWIPFVGTLIILASIYASVCIHSKRLHDMGQTGWWQVLPWVLGPVLVFGAAISVGVMPAIAALTNGEPEVSALTALVGLFVSIFIAFAIWLAFTLWVGCSLGQPRENKYGPPPINPTAVTV
>CP023313.2|ATC25685.1|3063993_3064407_-|DUF4437-domain-containing-protein
MRRAMAWTPMFLAMAVQAAPVTLAIDDARFAPLDPGNPNGPQMAVLRGDPATGPSDMLMRFSRGQGVPHVHSSDYRLVVLEGVMTHAQAGEGAGAKPLGPGSYWFQPGEQPHLDGCLSERCTMFISWSGKRDARRAP
>CP023313.2|ATC25686.1|3064486_3064993_-|phage-tail-tape-measure-protein
MSFDQEGLSAVPARAAEAAAALESLKAPAERAARSIDEAFARAGASLVRSLARAASDGEVSLAELARAMLGAAGAALKGGGLGEALSKTFAGARADGGPVLPGGAYLVGERGPELFRPASAGNIEPVGNSGVSVTVNVQGGEAQGLIRSDAQIAQALARAVSLGARGL
>CP023313.2|ATC25687.1|3064989_3065169_-|phage-tail-assembly-chaperone
MSWAAPLRLALSLGLPPEAFWRLSLKEWRALTQAPDAPCLNRAGLQDLLARYPDEETAP
>CP023313.2|ATC25688.1|3065165_3065450_-|hypothetical-protein
MLPPNPARGEVVVTLAGAPRRLCLTLGALARIEAALNLADWSQLPDRIATLSAAELSAILAALLEGGGEAPEIAARATVPEAAGALAAALAACA
>CP023313.2|ATC25689.1|3065583_3066000_-|phage-major-tail-protein,-TP901-1-family
MAAQAGKDMLLKISDGAPTPTFHTVAGLRARTISLNARTLDITDSDSTGRWRELLAGAGVKSVAVSGSGVFRDAVSDAQVRTSFFDQSARVWRLIIPDFGQLEGAFIVAALEYAGEHDGEAVFALSLASAGAVSFTAL
>CP023313.2|ATC25690.1|3066015_3066414_-|DUF3168-domain-containing-protein
MSDKPLIDALVATLKAAPAVTAIAGQRVYGAGPRLPTYPCVVVTRAEGRAVGGVGGEGIEHLLTLTCASRFGGPEEARALVAAVRAALHDARPSLVGRRLVNLRVPYADVFAGADRETTLGIVRVRAVTETL
>CP023313.2|ATC25691.1|3066410_3066692_-|phage-gp6-like-head-tail-connector-protein
MPQALTLAEARAFLRVSDASEDALLTLLIDAAEARVGAVAGVALTATSPAPLRLSVLILAAHAYEHRSSLGDTGEPSLALVEPWLTPYRKARL

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP023313_1	1.1\|1475194\|19\|CP023313\|CRISPRCasFinder	1475194-1475212	19	CP023313.2	1093008-1093026	2	0.895
CP023313_1	1.1\|1475194\|19\|CP023313\|CRISPRCasFinder	1475194-1475212	19	CP023313.2	2669859-2669877	2	0.895
CP023313_1	1.1\|1475194\|19\|CP023313\|CRISPRCasFinder	1475194-1475212	19	CP023313.2	2820809-2820827	2	0.895

1. spacer 1.1|1475194|19|CP023313|CRISPRCasFinder matches to position: 1093008-1093026, mismatch: 2, identity: 0.895

ttcagcaggggcggcggcg	CRISPR spacer
ttcagcagggtcggcgccg	Protospacer
********** ***** **

2. spacer 1.1|1475194|19|CP023313|CRISPRCasFinder matches to position: 2669859-2669877, mismatch: 2, identity: 0.895

ttcagcaggggcggcggcg	CRISPR spacer
ttcagcagtagcggcggcg	Protospacer
******** .*********

3. spacer 1.1|1475194|19|CP023313|CRISPRCasFinder matches to position: 2820809-2820827, mismatch: 2, identity: 0.895

ttcagcaggggcggcggcg	CRISPR spacer
ttcggctggggcggcggcg	Protospacer
***.** ************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1850635 : 1859661

uncultured_Mediterranean_phage(57.14%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATC24589.1\|1850635_1851898_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	2.0e-16	30.3
ATC24590.1\|1851930_1852836_+	EamA family transporter	NA	NA	NA	NA
ATC24591.1\|1852885_1853410_-	superoxide dismutase	Q9MC02	Salmonella_phage	3.9e-14	34.4
ATC24592.1\|1853534_1856294_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	1.5e-96	31.9
ATC24593.1\|1856320_1856812_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	4.9e-35	49.7
ATC24594.1\|1856813_1857293_+	N-acetyltransferase	NA	NA	NA	NA
ATC24595.1\|1857423_1858257_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	8.2e-22	34.5
ATC24596.1\|1858253_1859102_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.0e-24	37.3
ATC24597.1\|1859193_1859661_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.6e-35	52.8

DBSCAN-SWA_2

3043036 : 3068053

Rhodobacter_phage(28.57%)

protease,tail,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATC25668.1\|3043036_3044629_-\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	7.7e-21	28.4
ATC25669.1\|3044808_3045261_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
ATC25670.1\|3045257_3047240_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
ATC25671.1\|3047394_3047883_-	cytochrome c-type biogenesis protein CcmE	NA	NA	NA	NA
ATC25672.1\|3047879_3048992_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
ATC25673.1\|3048998_3049784_+	alpha/beta hydrolase	NA	NA	NA	NA
ATC25674.1\|3049784_3051155_-	hypothetical protein	NA	NA	NA	NA
ATC26793.1\|3051315_3052707_-	sensor histidine kinase	NA	NA	NA	NA
ATC25675.1\|3052748_3053426_-	DNA-binding response regulator	NA	NA	NA	NA
ATC25676.1\|3053441_3053759_-	hypothetical protein	NA	NA	NA	NA
ATC25677.1\|3053887_3054397_-	hypothetical protein	NA	NA	NA	NA
ATC25678.1\|3054384_3054567_-	hypothetical protein	NA	NA	NA	NA
ATC25679.1\|3054598_3055906_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
ATC25680.1\|3055902_3056262_-	transcriptional regulator	NA	NA	NA	NA
ATC25681.1\|3056424_3057372_-	J domain-containing protein	A0A2L0UZR4	Agrobacterium_phage	1.4e-17	26.5
ATC26794.1\|3057460_3059992_-	host specificity protein	A0A0K1LLC1	Rhodobacter_phage	1.3e-147	40.4
ATC26795.1\|3061295_3061925_-	peptidase	F4YXU4	Roseobacter_phage	4.9e-35	52.6
ATC25682.1\|3061969_3062596_-	DUF2163 domain-containing protein	A0A0K1Y6Z2	Rhodobacter_phage	2.2e-19	41.7
ATC25683.1\|3062595_3063231_-	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	1.6e-38	41.0
ATC25684.1\|3063378_3063843_+	DUF805 domain-containing protein	NA	NA	NA	NA
ATC25685.1\|3063993_3064407_-	DUF4437 domain-containing protein	NA	NA	NA	NA
ATC25686.1\|3064486_3064993_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
ATC25687.1\|3064989_3065169_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
ATC25688.1\|3065165_3065450_-	hypothetical protein	NA	NA	NA	NA
ATC25689.1\|3065583_3066000_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
ATC25690.1\|3066015_3066414_-	DUF3168 domain-containing protein	NA	NA	NA	NA
ATC25691.1\|3066410_3066692_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
ATC25692.1\|3066832_3068053_-\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	1.3e-79	43.3

DBSCAN-SWA_3

3945076 : 3967085

Rhizobium_phage(25.0%)

integrase,protease,head,portal,capsid,tail,terminase

attL 3943481:3943496|attR 3955648:3955663

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3943481:3943496	attL	NA	NA	NA	NA
ATC26471.1\|3945076_3946279_+\|integrase	site-specific integrase	A0A077KET4	Ralstonia_phage	5.7e-93	48.2
ATC26472.1\|3946285_3947116_-	hypothetical protein	NA	NA	NA	NA
ATC26473.1\|3947192_3947405_-	DNA-binding protein	NA	NA	NA	NA
ATC26474.1\|3947388_3947790_-	hypothetical protein	NA	NA	NA	NA
ATC26475.1\|3947779_3949705_-	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	1.6e-07	31.8
ATC26476.1\|3949914_3950184_-	DUF2312 domain-containing protein	A0A067XQH7	Caulobacter_phage	8.7e-26	72.5
ATC26477.1\|3950183_3950546_-	hypothetical protein	NA	NA	NA	NA
ATC26478.2\|3950545_3950854_-	hypothetical protein	NA	NA	NA	NA
ATC26479.2\|3950853_3951036_-	hypothetical protein	NA	NA	NA	NA
ATC26480.1\|3951332_3951965_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
ATC26831.1\|3952055_3952295_+	hypothetical protein	NA	NA	NA	NA
ATC26481.1\|3952291_3952642_+	hypothetical protein	NA	NA	NA	NA
ATC26482.1\|3952647_3952857_+	hypothetical protein	NA	NA	NA	NA
ATC26483.1\|3952853_3953060_+	hypothetical protein	NA	NA	NA	NA
ATC26484.1\|3953056_3954844_+	hypothetical protein	A0A068F3J2	Mycobacterium_phage	6.0e-06	29.9
ATC26485.1\|3954843_3956469_+	hypothetical protein	R9TSC7	Rhizobium_phage	7.3e-43	29.9
3955648:3955663	attR	NA	NA	NA	NA
ATC26486.1\|3956776_3957544_+	hypothetical protein	NA	NA	NA	NA
ATC26832.1\|3957830_3958091_+	HNH endonuclease	M1PLL8	Streptococcus_phage	4.1e-12	50.8
ATC26487.1\|3957945_3958803_+	hypothetical protein	NA	NA	NA	NA
ATC26488.1\|3958805_3960587_+\|terminase	terminase large subunit	Q6DMU3	Streptococcus_phage	5.5e-76	34.4
ATC26489.1\|3960586_3961867_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	6.0e-40	30.7
ATC26833.1\|3961832_3962549_+\|protease	Clp protease ClpP	C7BGG9	Burkholderia_phage	4.5e-53	58.2
ATC26490.1\|3962621_3963878_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	5.7e-59	34.2
ATC26491.1\|3963947_3964430_+	hypothetical protein	NA	NA	NA	NA
ATC26492.1\|3964429_3964723_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
ATC26493.1\|3964734_3964959_+	hypothetical protein	NA	NA	NA	NA
ATC26494.1\|3964909_3965299_+\|head,tail	head-tail adaptor protein	B4UTP9	Rhizobium_phage	9.1e-16	45.5
ATC26495.2\|3965291_3965768_+	hypothetical protein	NA	NA	NA	NA
ATC26496.1\|3965767_3966178_+	DUF3168 domain-containing protein	NA	NA	NA	NA
ATC26497.1\|3966216_3966648_+	hypothetical protein	NA	NA	NA	NA
ATC26498.1\|3966647_3967085_+	gene transfer agent family protein	B4UTQ4	Rhizobium_phage	1.4e-09	39.0

DBSCAN-SWA_4

3983257 : 3990358

Burkholderia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATC26513.1\|3983257_3983722_+	lysozyme	V5YSX1	Pseudomonas_phage	7.2e-36	52.9
ATC26514.1\|3983718_3984327_+	hypothetical protein	A0A1S5NQ26	Burkholderia_phage	5.6e-12	44.3
ATC26515.1\|3984371_3985166_-	hypothetical protein	A0A290FZK7	Caldibacillus_phage	6.6e-29	45.1
ATC26516.1\|3985634_3985976_-	hypothetical protein	NA	NA	NA	NA
ATC26517.1\|3986178_3987042_+	DNA methyltransferase	A0A219VHB5	Ochrobactrum_phage	1.2e-73	51.9
ATC26518.1\|3987404_3987719_+	YggT family protein	NA	NA	NA	NA
ATC26519.1\|3987711_3988008_+	DUF167 domain-containing protein	NA	NA	NA	NA
ATC26520.1\|3988202_3989969_+	hybrid sensor histidine kinase/response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	6.3e-40	29.5
ATC26521.1\|3989902_3990358_-	very short patch repair endonuclease	I6NSG0	Burkholderia_phage	1.1e-33	51.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage