CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP023314	Caulobacter vibrioides strain CB1 chromosome, complete genome	1 crisprs	csa3,WYL,DEDDh,DinG,cas3	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP023314_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP023314_1

778048-778152

Orphan

Consensus_repeat	Method
GGACTTCCTTAGAAGTCCATGTCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP023314_1

>merge|CP023314|1|778048-778152|CRISPRCasFinder
GGACTTCCTTAGAAGTCCATGTCGCCGCTCTGGATCGGCTGGGCCGATCCAGATCTCTTTGGGAGATGGGCGACTTTATGGACTTCCTTAGAAGTCCATGTCGCC

>CP023314|1|1|778048-778152|CRISPRCasFinder
GGACTTCCTTAGAAGTCCATGTCGCC	GCTCTGGATCGGCTGGGCCGATCCAGATCTCTTTGGGAGATGGGCGACTTTAT
GGACTTCCTTAGAAGTCCATGTCGCC

Protein	Signature genes	Signature genes Name	Protein_function
CP023314.2\|ATC27524.1\|773925_774180_-\|bacteriocin,-lactobin-A-family-protein	unknown	unknown	unknown
CP023314.2\|ATC27535.1\|785174_786551_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
CP023314.2\|ATC30589.1\|783319_783916_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
CP023314.2\|ATC27531.1\|780513_780942_+\|DUF4345-domain-containing-protein	unknown	unknown	unknown
CP023314.2\|ATC30590.1\|787553_789467_-\|DNA-mismatch-repair-protein-MutL	unknown	unknown	gnl\|CDD\|234630
CP023314.2\|ATC27533.1\|781855_783163_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173844
CP023314.2\|ATC27530.1\|780300_780495_+\|glyoxalase	unknown	unknown	gnl\|CDD\|319923
CP023314.2\|ATC27525.1\|774210_774471_-\|bacteriocin,-lactobin-A-family-protein	unknown	unknown	unknown
CP023314.2\|ATC27522.1\|773201_773324_+\|hypothetical-protein	unknown	unknown	unknown
CP023314.2\|ATC27521.1\|772079_772976_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
CP023314.2\|ATC27536.1\|786626_787394_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
CP023314.2\|ATC30588.1\|771583_771760_-\|hypothetical-protein	unknown	unknown	unknown
CP023314.2\|ATC27532.1\|781142_781805_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
CP023314.2\|ATC27523.1\|773629_773929_-\|hypothetical-protein	unknown	unknown	unknown
CP023314.2\|AVH77060.1\|771913_772027_-\|hypothetical-protein	unknown	unknown	unknown
CP023314.2\|ATC27534.1\|783988_785152_+\|hypothetical-protein	unknown	unknown	unknown
CP023314.2\|ATC27527.1\|775788_777969_+\|peptidase-domain-containing-ABC-transporter	unknown	unknown	gnl\|CDD\|225183
CP023314.2\|AVH77061.1\|772982_773087_-\|hypothetical-protein	unknown	unknown	unknown
CP023314.2\|ATC27526.1\|774586_775828_+\|hemolysin-secretion-protein-D	unknown	unknown	gnl\|CDD\|130902
CP023314.2\|ATC27529.1\|779835_780126_-\|molecular-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988

Protein	Function_ID	Function_description	E-value
CP023314.2\|ATC27536.1\|786626_787394_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	6.80486e-49
CP023314.2\|ATC30589.1\|783319_783916_+\|N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.22772e-22
CP023314.2\|ATC27532.1\|781142_781805_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	2.67004e-57
CP023314.2\|ATC27535.1\|785174_786551_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	3.27745e-08
CP023314.2\|ATC30590.1\|787553_789467_-\|DNA-mismatch-repair-protein-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
CP023314.2\|ATC27526.1\|774586_775828_+\|hemolysin-secretion-protein-D	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	2.04755e-26
CP023314.2\|ATC27527.1\|775788_777969_+\|peptidase-domain-containing-ABC-transporter	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	0
CP023314.2\|ATC27533.1\|781855_783163_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173844	cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.	0
CP023314.2\|ATC27530.1\|780300_780495_+\|glyoxalase	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.25045e-20
CP023314.2\|ATC27521.1\|772079_772976_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	7.44372e-12
CP023314.2\|ATC27529.1\|779835_780126_-\|molecular-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	6.24247e-56

>CP023314.2|ATC27527.1|775788_777969_+|peptidase-domain-containing-ABC-transporter
MVARSPLRGRTPLMDIPAELNFARRRRLPVIVGAEAAECGLACMAMVARYHGHDVDLNGLRQRFTLSMSGATLRSIMGFADHLGFAPRALKVELSALDKVRLPAILHWDLNHFVVLKSVQGGRAVVHDPALGARTYSLDELSKHFTGVALELTPSGRFEKITARAPIKLTSLWSRMIGFWPAFFQILGLSLALQVAVFAMPFQMQLVVDEAIFRADRDLLTVLALGFGALVIIQSAIEALRAWALQVFGQMLSFQIVGNLVRHMMRLPSDWYEKRHVGDILSRIGSASAIQDVLTRGVIAAIIDGLMAVVAIIILLLYAPTLAAVVVGAVALNLGLALALFPAMRARTEEQILESAREQSHVMETVRAATTIKLMGREAERESSWRNLYANAINAAVSVGKFQISLSFTQALITGLQTVIVIYLGARTILAGDGFSVGMLFAFLSFRQTFTDRANALINQFIQFKFLNLHLERLADIVTAETEAADTAAPRLEVAGALQLKDVSFRYGAADRPVLQGVDLEVAPGEFLAITGASGGGKTTLLKLMLGLRAPTEGTITLDGQPASPQLWRAWREQVGVVAQDDRLLSGTIADNIAFFDPDLDMERVQHAAMAAQVHDDIARMPMQYLSLVGDMGSTLSGGQKQRVLLARALYRRPRILVLDEGTANLDVQTEELIADLIAQLPITRIVVAHRPALLKRASRILVVEGGVLSTTCSELSRAEPKRAVF
>CP023314.2|ATC27526.1|774586_775828_+|hemolysin-secretion-protein-D
MSDLFRKEAVVHATRRLAGEVVLATSVPSRVLAGLVCLVVLAGATFAATASYARKETVVGWLTPQAGMIRLAARQGGIVANVHVREGDRVVVGQPIATLTLSSALEGGDSFAVLSRSLGAQSSAAGSRAAATQAALAAESRQLTQRRAALNRELAEAKRSLALQTERLTLARAEVARAETIAAQGFLSPRELQARRSAELAVQQEASTLSSQALSYERQIGEVDARLAAIPIDLQAARAEAASTLAGLEQQATQVEAQGRYVVVATVAGRVAALPVEAGQTVGVGAAVAVLTPGDSALVAELYAPSRAAGFVRQGQEVRLMYQAFPHQKFGVGEGVVTAVSRTVLAPSEVAIPGLQVQEPVFRIRVKLARDNVAAYGETLPLQPGMLLSADVVIDRRSLLEWLLDPLYAVGRR
>CP023314.2|ATC27525.1|774210_774471_-|bacteriocin,-lactobin-A-family-protein
MTALAMNVRELSFEEVDEVAGANMRAASVGVGGVAGAGAGWHAGVAVAARGAMWGARVGAIGGVGGAVAGVVLGAAIALIAYDLAE
>CP023314.2|ATC27524.1|773925_774180_-|bacteriocin,-lactobin-A-family-protein
MKTLTLAEIDYVSGGSERGAMVSGAAVAGGVGGANYARAAIHGASWGARIGAVGGVAGIVAGALVGAAAGGILAYALYEAVDGS
>CP023314.2|ATC27523.1|773629_773929_-|hypothetical-protein
MTMTKRATLQFTQILNWTIGILLVFGWLQLIGVFSVKGLDPVVLFGVSAFLTGYISLRDFRSMGLGNIKSFIASSALGILILGLVTLLSKATEYIPKLF
>CP023314.2|ATC27522.1|773201_773324_+|hypothetical-protein
MLSGTSGEDDDGDRRRDPADDHPERKLEGLGLVRVRAPEQ
>CP023314.2|AVH77061.1|772982_773087_-|hypothetical-protein
MISSAVNPCDDAPHPHKALSEAHSTLGRRRSSAA
>CP023314.2|ATC27521.1|772079_772976_-|CPBP-family-intramembrane-metalloprotease
MIGIDNSVPTPSLARQAISILAGALGGFASGLIAVSILLGVLGIFDLRPLTDSERLSVFENGALYTAELAIILLALAVGFVGTAGAVLKRPFVEWLTDGRGLRFDLCLYGLTLGAAATLAGLIGNAAIDGDRLGFIGSTPSGLAPGIWVYLVAMPLGFLVAAFAEELFFRGYLLKLLRWWGAHPVVAITVTSIAFAAFHLEFQPEVFALRMLSGAALAWSVYRLGGIEFAVGAHAAGNIVLAFFIPPLSETTTSSADLYGVGIEILTSAMIIIGVEVVRARLSFRADTFSLWAKEGGT
>CP023314.2|AVH77060.1|771913_772027_-|hypothetical-protein
MKSPFKRPHTNEAKTLEFALGVILGGIATAIAIVILV
>CP023314.2|ATC30588.1|771583_771760_-|hypothetical-protein
MMTHAPRTKAIARLLRRWWFAEPAFKAAVLASAALLVVSTVNALIEIGALVHDAVCPH
>CP023314.2|ATC27529.1|779835_780126_-|molecular-chaperone-GroES
MKFRPLGDRVLVKRVEEETKTKGGIIIPDTAKEKPQEGEVVAVGPGARNDKGDVVALDVKAGDRILFGKWSGTEVKVDGQDLLIMKESDVLGVVEA
>CP023314.2|ATC27530.1|780300_780495_+|glyoxalase
MMDHMGVTVRDLQASRAFYGATLAAGGLDNGAPGVRPHYHPHYYGAFVLDPDGRNVEAVCHAPA
>CP023314.2|ATC27531.1|780513_780942_+|DUF4345-domain-containing-protein
MSSYVLSLLLAVIACVIGGTLGGMILARPATLLEAAGLSNDDTPKPPLFAEGRALGGVLIASHGVAALYLGYQPRIGAAMALALALAWLGAAAGRAVSLALDGDAGRYNRGAMLFNALIGVTLTLPWFQIGKVVLRGPLGLA
>CP023314.2|ATC27532.1|781142_781805_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MRGRCGGPFFVKGGPVFPPLIRPSGPPSPARGEGRNYRADSRARLGDHRPMPRPAHLFLDRAPSPLGDLLIVTDETGLLRAVDFHDFEPRLRRLARLHYGDLVLETGPAPAAIKAAFARYFAGDLAALVSLAWATNGTPFQQAVWTALTQIPAGQTITYSELARRAGRPLAIRAAGAANGANPLSLVAPCHRVIGTDGALTGYAGGIDRKRWLLAHEGAL
>CP023314.2|ATC27533.1|781855_783163_-|acyl-CoA-dehydrogenase
MDFDISPKQRAFLDRVTAFMDEHVYPAIPAYEAEMNVLGAERWKVVQVVEDLKKKAKAAGLWNFFMPPHSGQTHVDDTFQFEGVQLTNLEYSLIAEQLGKVGFASEVFNCSAPDTGNMEVLMRYGTLAQKEKWLRPLMNGEIRSAFLMTEPAVASSDATNIETRIERDGDHYVINGRKWWSSGVGDPRCKVAIVMGKTDPDNASRHAQQSQVLVPLDSPGIEIVRMLPVFGYDDAPHGHAEVILKNVRVPIEDALLLGEGRGFEIAQGRLGPGRIHHCMRTIGTAEVALEKMCQRLMSRKAFGKYVSDHSVWEERVADARIDIEMCRLLCLKAADMMDKAGNKSARLEIAMIKVAAPRLALKIIDDAIQAHGGGGVTTDFGLAKAYAGIRTLRLADGPDEVHQRTIARMEYGKYGDLMYKQKAEKEAALHVPGIR
>CP023314.2|ATC30589.1|783319_783916_+|N-acetyltransferase
MLNLTADILQGRYVRLEPVTVDHHDELKAAIDCDPASWEIMSVNGCGEGFEDFWGALQGETDRGERIGFAIRRLVDGKVVGTSSYLNIRRLHGGLEIGATFLNPEARSGPVNPESKRLMLGHAFDKAGAIRVELVTDVRNARSQAAIQKLGATKEGVLRNHKVTWTGHVRDTAVFSITDYDWPAIRERLEFRLSETFA
>CP023314.2|ATC27534.1|783988_785152_+|hypothetical-protein
MAGMACLRICIEHGARSVTLDGVTPAKIDKVASGYIDVNWRAPRRHGRVGPGAYVLIDPSAETLNGEELRQMAAELQVHLFGTQGQQDLCMLTFEGDEEQVLKFTTLPEEELLAMRGGAEPPPPEGRTRIVSQDGIRELAPWGSTPRVAAEQEKVEAPPVRLGWRGVYSLPSQRFEAAQVQSFLKPGEAEPQSDADFMDRDLQALDRAVAALEGDPRLKAWVGVRLWTVARGGLRDTCRERFAAIPPSVRERLGAMVYDAPRDLPFSAIGPLRDLVQPYFARVGLCVNDPGFYVQALPDALVHCVVFQLPEEDEKARVLKAHRFLSARGQYVARSLRMGLAGVKTPRELELARKMGAHMVKGPMISALFATPVSDQVVPVTELPLRT
>CP023314.2|ATC27535.1|785174_786551_+|hypothetical-protein
MAAGCTKSITALTNWRGMVAHAAGMTAIACLRILFTADADMRAGDMPKHKAQGVADAFLKAKWRKPRKCGAVAPLAFVLADHNATELDPTEVQGLAVELEKVLFPNRPIGQIALMTFEGDETAVLHFSALSQKELASLMAGEGYGGEPGRVHVVTADAVKPMPVTREEAKVYAAEKAKAAEAEKPAAAAPAAAAPAPVQAPAPSPAKSAPAPAPTPAPVAAKVVTPQRPADTGWWGVYDLSQGAFVGSTVAMRADLVEPPPEDDAKLLKRDLVALTDVQAALKTASFGEIQASFGFWNLITPASQESYKARLSRYPLDARPRLTASIYGAPREASIGMLQQMRAQLSGAFAAMDLRITDPTFPVQGLPPELLESVTLVLSGETEHDRLKQILKFVERKSAYAAKGVMQCVANVASAVELEACKVAGVVRVQGPAVTDFMDTPVAAADGAPLALAKSAA
>CP023314.2|ATC27536.1|786626_787394_+|MerR-family-transcriptional-regulator
MSVYTVKQMARLSGVSVRALHHYDAIGLLKPRAVGANGYRYYDRQDLLRLQQILFHRALETPLKDIQAALDQPGFDLAAALRAQRERLAAQAERYARLVDVVDRTLADLEGDETMDDKHLFEGFDPEKQARHEAWLVEHYGDEATRRIADAKAGMKSWGKKDWSQFQEEAKAIEHDLAKALTQGLPVDSAPVTAIMRRHWAWVGRSWNREPTPDAFAGLGHLYQANPEFTARYEAIAPGLTEYFSEAMRAFARGR
>CP023314.2|ATC30590.1|787553_789467_-|DNA-mismatch-repair-protein-MutL
MPIRRLPPETVNRIAAGEVVERPASAIKELVDNAIDAGATRIEVEAHGGGLTRILVADDGCGLSPEELPVAIERHATSKLAPDADGLWDLLRIHTMGFRGEALPSIGSVARLQISSRAKGAKDAFSILVEGGQVGEVAPAAFPGPHGARIEVRDLFYATPARLKFMKSERAEALAITEEIKRQAMANESVGFSLDIDGRRVLRLPPEHPGPQGRLARLAAVLGREFQENALEIDQTRDGVRLSGFAGLPTYNRGNAAHQYLFVNGRPVRDRLLQGALRAAYADFLARDRHPTAALYVTLETTEVDVNVHPAKAEVRFRDPALVRGLIVGALRHALAGAGHRASTTVAAQALDSIRAQQSPFPGYQPQYQPGPSPAGFSAWREGGWTPPTQRPMDLPGLNEVSARVEPSYGGDLAGVVREAYAAAAFEDRPPTDYPGATAPFDPVDYPLGAARAQVHETYIVAQTRDGMVIVDQHAAHERLVYERMKGEMASGGVTRQTLLLPEVVDLDPAEAERVVARAEELAGLGLVLESFGPGAVLVRETPALLGKTDAAALVRDIADDLAENGQALALKERLEEVCSTMACHGSVRAGRRLNGAEMNALLREMEATPHSGQCNHGRPTYVELKLADIEKLFGRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1768595 : 1777167

uncultured_Mediterranean_phage(57.14%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATC28381.1\|1768595_1769858_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	9.2e-17	30.3
ATC28382.1\|1769890_1770796_+	EamA family transporter	NA	NA	NA	NA
ATC28383.1\|1770845_1771370_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	2.3e-14	34.4
ATC28384.1\|1771494_1774254_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	1.5e-96	31.9
ATC28385.1\|1774280_1774772_+	phosphopantetheine adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	6.5e-35	49.7
ATC30638.1\|1774929_1775763_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	8.2e-22	34.5
ATC28386.1\|1775759_1776608_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.8e-24	37.3
ATC28387.1\|1776699_1777167_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.6e-35	52.8

DBSCAN-SWA_2

3064292 : 3114463

Rhodobacter_phage(18.18%)

tail,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATC29566.1\|3064292_3065646_+\|transposase	IS3 family transposase ISCc3	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	7.3e-12	24.8
ATC29567.1\|3065699_3067664_-	hypothetical protein	NA	NA	NA	NA
ATC29568.1\|3067669_3068041_-	hypothetical protein	NA	NA	NA	NA
ATC29569.1\|3068111_3068762_-	hypothetical protein	NA	NA	NA	NA
AVH77096.1\|3068993_3069107_+	hypothetical protein	NA	NA	NA	NA
ATC29570.1\|3069332_3069488_-	hypothetical protein	NA	NA	NA	NA
ATC29571.1\|3069497_3071387_+	pilus assembly protein TadG	A0A2I7RHS5	Vibrio_phage	1.3e-06	40.0
ATC29572.1\|3071610_3072945_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
ATC29573.1\|3072941_3073796_-	transcriptional regulator	NA	NA	NA	NA
AVH77097.1\|3073802_3073949_-	hypothetical protein	NA	NA	NA	NA
ATC29574.1\|3073899_3074349_-	hypothetical protein	NA	NA	NA	NA
ATC29575.1\|3074354_3074708_+	hypothetical protein	NA	NA	NA	NA
ATC29576.1\|3075241_3076264_+\|transposase	IS110 family transposase ISCc4	NA	NA	NA	NA
ATC29577.1\|3076388_3077574_+\|transposase	IS3-like element IS511 family transposase	S5WIU1	Leptospira_phage	5.9e-50	43.0
ATC29578.1\|3077546_3078731_+	hypothetical protein	NA	NA	NA	NA
AVH77098.1\|3078727_3078853_-	hypothetical protein	NA	NA	NA	NA
ATC29579.1\|3079099_3079270_+	DNA repair protein	NA	NA	NA	NA
ATC29580.1\|3079348_3079906_+	DUF2272 domain-containing protein	A0A1V0EFA5	Caulobacter_phage	8.5e-100	100.0
ATC29581.1\|3080013_3081267_+	dipeptidase	NA	NA	NA	NA
ATC29582.1\|3081288_3082050_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
ATC29583.1\|3082080_3083022_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
ATC29584.1\|3083070_3083700_-	hypothetical protein	NA	NA	NA	NA
ATC29585.1\|3083696_3084149_-	hypothetical protein	NA	NA	NA	NA
ATC29586.1\|3084165_3084726_-	RNA polymerase sigma factor	NA	NA	NA	NA
ATC29587.1\|3084752_3085154_-	calcium-binding protein	NA	NA	NA	NA
ATC29588.1\|3085431_3088392_-	glutamine-synthetase adenylyltransferase	NA	NA	NA	NA
ATC30696.2\|3088426_3089314_+	peptidase M56	NA	NA	NA	NA
ATC29589.1\|3089401_3089641_+	hypothetical protein	NA	NA	NA	NA
ATC29590.1\|3089671_3091078_-	sensor histidine kinase	NA	NA	NA	NA
ATC29591.1\|3091082_3091385_-	toxin ParE3	NA	NA	NA	NA
ATC29592.1\|3091397_3091616_-	antitoxin ParD3	NA	NA	NA	NA
ATC29593.1\|3091648_3092320_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.3e-30	35.7
ATC29594.1\|3092398_3092689_-	hypothetical protein	NA	NA	NA	NA
ATC29595.1\|3092762_3094355_-\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	7.7e-21	28.4
ATC29596.1\|3094534_3094987_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
ATC29597.1\|3094983_3096966_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
ATC29598.1\|3097120_3097609_-	cytochrome c-type biogenesis protein CcmE	NA	NA	NA	NA
ATC29599.1\|3097605_3098718_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
ATC29600.1\|3098724_3099510_+	alpha/beta hydrolase	NA	NA	NA	NA
ATC29601.1\|3099510_3100881_-	hypothetical protein	NA	NA	NA	NA
ATC29602.1\|3101041_3102439_-	sensor histidine kinase	NA	NA	NA	NA
ATC29603.1\|3102569_3103247_-	DNA-binding response regulator	NA	NA	NA	NA
ATC29604.1\|3103265_3103583_-	hypothetical protein	NA	NA	NA	NA
ATC29605.1\|3103711_3104221_-	hypothetical protein	NA	NA	NA	NA
ATC29606.1\|3104208_3104391_-	hypothetical protein	NA	NA	NA	NA
ATC29607.1\|3104422_3105730_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
ATC29608.1\|3105726_3106086_-	transcriptional regulator	NA	NA	NA	NA
ATC29609.1\|3106248_3107193_-	J domain-containing protein	A0A2L0UZR4	Agrobacterium_phage	1.1e-17	26.2
ATC30697.1\|3107281_3109813_-	host specificity protein	A0A0K1LLC1	Rhodobacter_phage	2.5e-146	40.0
ATC29610.1\|3111116_3111737_-	peptidase	F4YXU4	Roseobacter_phage	1.9e-36	53.3
ATC29611.1\|3111733_3112360_-	DUF2163 domain-containing protein	A0A0K1Y6Z2	Rhodobacter_phage	4.9e-19	41.0
ATC29612.1\|3112359_3112995_-	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	2.7e-41	44.3
ATC29613.1\|3113142_3113607_+	DUF805 domain-containing protein	NA	NA	NA	NA
ATC29614.1\|3113780_3114287_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
ATC29615.1\|3114283_3114463_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage