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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
AP018040 Petrimonas sp. IBARAKI DNA, complete genome 3 crisprs cas7,cas5,cas3,cas6,cas1,cas2,cas4,DEDDh,PD-DExK,RT,csa3,cas8b6 0 11 0 0

Results visualization

1. AP018040
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
AP018040_1 704690-707352 TypeI-B ?
36 spacers
cas4,cas2,cas1,cas6,cas3,cas5,cas7,cas8b1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
AP018040_2 1434124-1434196 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
AP018040_3 2376836-2381247 Unclear I-A,II-B,III-A
67 spacers
cas2,cas1,cas4,cas7,cas8b6,cas3,cas5,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
AP018040_2 2.1|1434147|27|AP018040|CRISPRCasFinder 1434147-1434173 27 KR093640 Moraxella phage Mcat16, complete genome 10394-10420 5 0.815
AP018040_2 2.1|1434147|27|AP018040|CRISPRCasFinder 1434147-1434173 27 KR093642 Moraxella phage Mcat18, complete genome 9309-9335 5 0.815
AP018040_2 2.1|1434147|27|AP018040|CRISPRCasFinder 1434147-1434173 27 KR093641 Moraxella phage Mcat17, complete genome 1871-1897 5 0.815
AP018040_2 2.1|1434147|27|AP018040|CRISPRCasFinder 1434147-1434173 27 KR093643 Moraxella phage Mcat19, complete genome 5920-5946 5 0.815
AP018040_2 2.1|1434147|27|AP018040|CRISPRCasFinder 1434147-1434173 27 KR093639 Moraxella phage Mcat15, complete genome 9853-9879 5 0.815
AP018040_3 3.6|2377192|36|AP018040|PILER-CR,CRISPRCasFinder,CRT 2377192-2377227 36 MH617335 Microviridae sp. isolate ctcb564, complete genome 64-99 5 0.861
AP018040_2 2.1|1434147|27|AP018040|CRISPRCasFinder 1434147-1434173 27 MF360958 Salicola phage SCTP-2, complete genome 263310-263336 6 0.778
AP018040_3 3.5|2377128|34|AP018040|PILER-CR,CRISPRCasFinder,CRT 2377128-2377161 34 MG945157 UNVERIFIED: Microviridae sp. isolate 369-1801, complete genome 2256-2289 7 0.794
AP018040_3 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT 2379088-2379122 35 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 42531-42565 7 0.8
AP018040_3 3.4|2377064|34|AP018040|PILER-CR,CRISPRCasFinder,CRT 2377064-2377097 34 NZ_AP017296 Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence 313375-313408 8 0.765
AP018040_3 3.5|2377128|34|AP018040|PILER-CR,CRISPRCasFinder,CRT 2377128-2377161 34 MG945136 UNVERIFIED: Microviridae sp. isolate 221-1801, complete genome 2408-2441 8 0.765
AP018040_3 3.16|2377850|35|AP018040|PILER-CR,CRISPRCasFinder,CRT 2377850-2377884 35 MH745368 Escherichia phage fp01, complete genome 4751-4785 8 0.771
AP018040_3 3.38|2379283|35|AP018040|PILER-CR,CRISPRCasFinder,CRT 2379283-2379317 35 NC_021325 Clostridium phage vB_CpeS-CP51, complete genome 35372-35406 8 0.771
AP018040_3 3.5|2377128|34|AP018040|PILER-CR,CRISPRCasFinder,CRT 2377128-2377161 34 MG945908 UNVERIFIED: Microviridae sp. isolate 5193-1602, partial genome 138-171 9 0.735
AP018040_3 3.24|2378371|34|AP018040|PILER-CR,CRISPRCasFinder,CRT 2378371-2378404 34 NZ_CP023549 Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence 58450-58483 9 0.735
AP018040_3 3.61|2380787|35|AP018040|PILER-CR,CRISPRCasFinder,CRT 2380787-2380821 35 NC_009475 Bradyrhizobium sp. BTAi1 plasmid pBBta01, complete sequence 51173-51207 9 0.743
AP018040_3 3.17|2377915|34|AP018040|PILER-CR,CRISPRCasFinder,CRT 2377915-2377948 34 NZ_CP012500 Escherichia coli strain 09-00049 plasmid pCFSAN004180G, complete sequence 10132-10165 10 0.706
AP018040_3 3.17|2377915|34|AP018040|PILER-CR,CRISPRCasFinder,CRT 2377915-2377948 34 NZ_CP042296 Escherichia coli strain RM9088 plasmid p1RM9088, complete sequence 122751-122784 10 0.706
AP018040_3 3.17|2377915|34|AP018040|PILER-CR,CRISPRCasFinder,CRT 2377915-2377948 34 NZ_CP012499 Escherichia coli strain GB089 plasmid pCFSAN004181P, complete sequence 109856-109889 10 0.706
AP018040_3 3.17|2377915|34|AP018040|PILER-CR,CRISPRCasFinder,CRT 2377915-2377948 34 NZ_CP012501 Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence 30043-30076 10 0.706
AP018040_3 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT 2379088-2379122 35 MT375526 Pelagibacter phage Himinglaeva EXVC011P, complete genome 31585-31619 10 0.714
AP018040_3 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT 2379088-2379122 35 MH598807 Pelagibacter phage HTVC120P, complete genome 7115-7149 10 0.714
AP018040_3 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT 2379088-2379122 35 MT375531 Pelagibacter phage Unn EXVC019P, complete genome 13118-13152 10 0.714
AP018040_3 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT 2379088-2379122 35 MT375520 Pelagibacter phage Bylgja EXVC0, complete genome 31585-31619 10 0.714
AP018040_3 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT 2379088-2379122 35 AP013545 Uncultured phage_MedDCM-OCT-S46-C10 DNA, complete genome, group G8, isolate: uvMED-CGR-U-MedDCM-OCT-S46-C10 14194-14228 10 0.714
AP018040_3 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT 2379088-2379122 35 MT375527 Pelagibacter phage Hroenn EXVC0, complete genome 25003-25037 10 0.714
AP018040_3 3.59|2380659|34|AP018040|PILER-CR,CRISPRCasFinder,CRT 2380659-2380692 34 NZ_CP021375 Rhizobium sp. ACO-34A plasmid pRACO34Aa, complete sequence 14941-14974 10 0.706
AP018040_3 3.24|2378371|34|AP018040|PILER-CR,CRISPRCasFinder,CRT 2378371-2378404 34 MG592399 Vibrio phage 1.015.O._10N.222.51.E5, partial genome 38974-39007 11 0.676

1. spacer 2.1|1434147|27|AP018040|CRISPRCasFinder matches to KR093640 (Moraxella phage Mcat16, complete genome) position: , mismatch: 5, identity: 0.815

atgcgtgaaaaaatgcaatatcaatcc	CRISPR spacer
atgcgtcaaaaaatgcaacatcatttg	Protospacer
****** ***********.**** *. 

2. spacer 2.1|1434147|27|AP018040|CRISPRCasFinder matches to KR093642 (Moraxella phage Mcat18, complete genome) position: , mismatch: 5, identity: 0.815

atgcgtgaaaaaatgcaatatcaatcc	CRISPR spacer
atgcgtcaaaaaatgcaacatcatttg	Protospacer
****** ***********.**** *. 

3. spacer 2.1|1434147|27|AP018040|CRISPRCasFinder matches to KR093641 (Moraxella phage Mcat17, complete genome) position: , mismatch: 5, identity: 0.815

atgcgtgaaaaaatgcaatatcaatcc	CRISPR spacer
atgcgtcaaaaaatgcaacatcatttg	Protospacer
****** ***********.**** *. 

4. spacer 2.1|1434147|27|AP018040|CRISPRCasFinder matches to KR093643 (Moraxella phage Mcat19, complete genome) position: , mismatch: 5, identity: 0.815

atgcgtgaaaaaatgcaatatcaatcc	CRISPR spacer
atgcgtcaaaaaatgcaacatcatttg	Protospacer
****** ***********.**** *. 

5. spacer 2.1|1434147|27|AP018040|CRISPRCasFinder matches to KR093639 (Moraxella phage Mcat15, complete genome) position: , mismatch: 5, identity: 0.815

atgcgtgaaaaaatgcaatatcaatcc	CRISPR spacer
atgcgtcaaaaaatgcaacatcatttg	Protospacer
****** ***********.**** *. 

6. spacer 3.6|2377192|36|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to MH617335 (Microviridae sp. isolate ctcb564, complete genome) position: , mismatch: 5, identity: 0.861

gatgtaacctagatcatgtgttgatctttcataatt	CRISPR spacer
tacataacctaggtcatgtgttgatctttcgtaatt	Protospacer
 *..********.*****************.*****

7. spacer 2.1|1434147|27|AP018040|CRISPRCasFinder matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 6, identity: 0.778

atgcgtgaaaaaatgcaatatcaatcc	CRISPR spacer
gctaatgaaacaatgcaatatcaatcc	Protospacer
..  .***** ****************

8. spacer 3.5|2377128|34|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to MG945157 (UNVERIFIED: Microviridae sp. isolate 369-1801, complete genome) position: , mismatch: 7, identity: 0.794

--ttaagcccggcacatacccacaagtcggcgttgt	CRISPR spacer
ggtttaccct--cacatacgcacatgtcggcgttgt	Protospacer
  ** * **.  ******* **** ***********

9. spacer 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.8

tgttttatttctttaattttagaattgattccatt	CRISPR spacer
tgttttattgcttgaattttagaattgttatcaac	Protospacer
********* *** ************* * .** .

10. spacer 3.4|2377064|34|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017296 (Nostoc sp. NIES-3756 plasmid pNOS3756_1, complete sequence) position: , mismatch: 8, identity: 0.765

gataatgctccgatacttttcatgttttcaaagc	CRISPR spacer
taaaattcttcgatacttttcatgtttttataaa	Protospacer
 * *** **.******************.* *. 

11. spacer 3.5|2377128|34|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to MG945136 (UNVERIFIED: Microviridae sp. isolate 221-1801, complete genome) position: , mismatch: 8, identity: 0.765

--ttaagcccggcacatacccacaagtcggcgttgt	CRISPR spacer
ggtttgccct--cacatacgcacatgtcggcgttgt	Protospacer
  ** . **.  ******* **** ***********

12. spacer 3.16|2377850|35|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to MH745368 (Escherichia phage fp01, complete genome) position: , mismatch: 8, identity: 0.771

ctgttttacacggcgtgcgggtggccacggaacgg	CRISPR spacer
acgctgtagtcggcgtgcgggtggactcggaacgg	Protospacer
 .*.* **  ************** * ********

13. spacer 3.38|2379283|35|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to NC_021325 (Clostridium phage vB_CpeS-CP51, complete genome) position: , mismatch: 8, identity: 0.771

atatattacagaaataaaatatattccgacgatga	CRISPR spacer
atatattacataaataaaaaatatttagaaaaagt	Protospacer
********** ******** *****. ** .* * 

14. spacer 3.5|2377128|34|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to MG945908 (UNVERIFIED: Microviridae sp. isolate 5193-1602, partial genome) position: , mismatch: 9, identity: 0.735

ttaagcccg---gcacatacccacaagtcggcgttgt	CRISPR spacer
---ggcttgccctcacatacgcacatgtcggcgttgt	Protospacer
   .**..*    ******* **** ***********

15. spacer 3.24|2378371|34|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

ggatacggtgcttgatcagatcaaggcggtcaag	CRISPR spacer
cgccacgctgctggatcagatcaaggcgcaggag	Protospacer
 * .*** **** ***************   .**

16. spacer 3.61|2380787|35|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to NC_009475 (Bradyrhizobium sp. BTAi1 plasmid pBBta01, complete sequence) position: , mismatch: 9, identity: 0.743

ccgggaaaacgcgcgacgccgcaaatcgaatttgc	CRISPR spacer
cggtgcaaacgcgcgccgccgcagatcgaatccag	Protospacer
* * * ********* *******.*******... 

17. spacer 3.17|2377915|34|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012500 (Escherichia coli strain 09-00049 plasmid pCFSAN004180G, complete sequence) position: , mismatch: 10, identity: 0.706

ctcgatattcagtgccgggaaattattagagatt	CRISPR spacer
tctgatgttcagtgcagggaaattattaacccgt	Protospacer
...***.******** ************.    *

18. spacer 3.17|2377915|34|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042296 (Escherichia coli strain RM9088 plasmid p1RM9088, complete sequence) position: , mismatch: 10, identity: 0.706

ctcgatattcagtgccgggaaattattagagatt	CRISPR spacer
tctgatgttcagtgcagggaaattattaacccgt	Protospacer
...***.******** ************.    *

19. spacer 3.17|2377915|34|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012499 (Escherichia coli strain GB089 plasmid pCFSAN004181P, complete sequence) position: , mismatch: 10, identity: 0.706

ctcgatattcagtgccgggaaattattagagatt	CRISPR spacer
tctgatgttcagtgcagggaaattattaacccgt	Protospacer
...***.******** ************.    *

20. spacer 3.17|2377915|34|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012501 (Escherichia coli strain 08-00022 plasmid pCFSAN004179G, complete sequence) position: , mismatch: 10, identity: 0.706

ctcgatattcagtgccgggaaattattagagatt	CRISPR spacer
tctgatgttcagtgcagggaaattattaacccgt	Protospacer
...***.******** ************.    *

21. spacer 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to MT375526 (Pelagibacter phage Himinglaeva EXVC011P, complete genome) position: , mismatch: 10, identity: 0.714

tgttttatttctttaattttagaattgattccatt	CRISPR spacer
tgttttatttctttacttttagacttctcttttgc	Protospacer
*************** ******* **  .*..  .

22. spacer 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to MH598807 (Pelagibacter phage HTVC120P, complete genome) position: , mismatch: 10, identity: 0.714

tgttttatttctttaattttagaattgattccatt	CRISPR spacer
tgttttatttctttacttttagacttctcttttgc	Protospacer
*************** ******* **  .*..  .

23. spacer 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to MT375531 (Pelagibacter phage Unn EXVC019P, complete genome) position: , mismatch: 10, identity: 0.714

tgttttatttctttaattttagaattgattccatt	CRISPR spacer
tgttttatttctttacttttagacttctcttttgc	Protospacer
*************** ******* **  .*..  .

24. spacer 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to MT375520 (Pelagibacter phage Bylgja EXVC0, complete genome) position: , mismatch: 10, identity: 0.714

tgttttatttctttaattttagaattgattccatt	CRISPR spacer
tgttttatttctttacttttagacttctcttttgc	Protospacer
*************** ******* **  .*..  .

25. spacer 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to AP013545 (Uncultured phage_MedDCM-OCT-S46-C10 DNA, complete genome, group G8, isolate: uvMED-CGR-U-MedDCM-OCT-S46-C10) position: , mismatch: 10, identity: 0.714

tgttttatttctttaattttagaattgattccatt	CRISPR spacer
tgttttatttctttacttttagacttctcttttgc	Protospacer
*************** ******* **  .*..  .

26. spacer 3.35|2379088|35|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to MT375527 (Pelagibacter phage Hroenn EXVC0, complete genome) position: , mismatch: 10, identity: 0.714

tgttttatttctttaattttagaattgattccatt	CRISPR spacer
tgttttatttctttacttttagacttctcttttgc	Protospacer
*************** ******* **  .*..  .

27. spacer 3.59|2380659|34|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021375 (Rhizobium sp. ACO-34A plasmid pRACO34Aa, complete sequence) position: , mismatch: 10, identity: 0.706

ggatattttcttccccctccatgctcgtgataca	CRISPR spacer
gatcattttttttcccctccatgctcgtatcgaa	Protospacer
*. .*****.**.***************. .. *

28. spacer 3.24|2378371|34|AP018040|PILER-CR,CRISPRCasFinder,CRT matches to MG592399 (Vibrio phage 1.015.O._10N.222.51.E5, partial genome) position: , mismatch: 11, identity: 0.676

ggatacggtgcttgatcagatcaaggcggtcaag	CRISPR spacer
taatacggtgcttgattatatcaagggcgcgtta	Protospacer
 .**************.* *******  *.   .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage