CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP022319	Bacillus altitudinis strain SGAir0031 chromosome, complete genome	0 crisprs	csa3,DEDDh,WYL,DinG,cas3	0	0	12	0
CP022320	Bacillus altitudinis strain SGAir0031 plasmid pSGAir0031, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

22160 : 30874

uncultured_Mediterranean_phage(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATH70702.1\|22160_23435_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.3e-95	51.1
ATH70703.1\|23536_24364_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.1e-10	54.4
ATH70704.1\|24673_25333_-	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	1.1e-21	33.2
ATH70705.1\|25329_25953_-	deoxynucleoside kinase	A0A1G5SAJ8	Enterococcus_phage	2.0e-12	28.8
ATH70706.1\|26032_27334_-	LysM peptidoglycan-binding domain-containing protein	A0A2P1CIG4	Microbacterium_phage	1.4e-07	34.8
ATH70707.1\|27379_27934_-	cysteine hydrolase	NA	NA	NA	NA
ATH70708.1\|28013_28490_+	nucleoside deaminase	NA	NA	NA	NA
ATH70709.1\|29161_30874_+	DNA polymerase III subunit gamma/tau	D9ZNI9	Clostridium_phage	6.8e-55	34.4

DBSCAN-SWA_2

657526 : 667422

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATH71263.1\|657526_658822_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.9e-18	26.9
ATH71264.1\|658894_659617_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3G7P8	Synechococcus_phage	1.8e-46	43.7
ATH71265.1\|659609_659864_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FKD5	Synechococcus_phage	1.6e-05	33.3
ATH71266.1\|659860_660544_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
ATH71267.1\|660527_662759_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	8.5e-159	41.8
ATH74378.1\|662734_664165_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.3e-51	32.9
ATH71268.1\|664261_665302_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	1.1e-65	43.8
ATH71269.1\|665298_665868_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.9e-31	39.5
ATH71270.1\|665883_667422_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	4.8e-76	51.8

DBSCAN-SWA_3

1130356 : 1165237

Planktothrix_phage(16.67%)

tRNA,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATH71699.1\|1130356_1131352_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
ATH71700.1\|1132106_1133744_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
ATH71701.1\|1133860_1134805_+	ABC transporter permease	NA	NA	NA	NA
ATH71702.1\|1134808_1135726_+	ABC transporter permease	NA	NA	NA	NA
ATH71703.1\|1135729_1136818_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.8e-14	28.5
ATH71704.1\|1136819_1137737_+	ATP-binding cassette domain-containing protein	M1IB70	Acanthocystis_turfacea_Chlorella_virus	2.1e-07	26.1
ATH71705.1\|1137842_1138130_+	hypothetical protein	NA	NA	NA	NA
ATH71706.1\|1138267_1138846_+	N-acetyltransferase	NA	NA	NA	NA
ATH71707.1\|1139039_1139435_+	transcriptional regulator Spx	NA	NA	NA	NA
ATH71708.1\|1139475_1140141_-	TerC family protein	W8EBD0	Pseudomonas_phage	1.9e-29	37.5
ATH71709.1\|1140405_1141071_+	adaptor protein MecA	NA	NA	NA	NA
ATH71710.1\|1141156_1142677_+	cardiolipin synthase	NA	NA	NA	NA
ATH74397.1\|1142839_1144000_+	competence protein	NA	NA	NA	NA
ATH74396.1\|1144037_1146041_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	2.4e-59	25.5
ATH71711.1\|1146023_1146203_-	hypothetical protein	NA	NA	NA	NA
ATH71712.1\|1146268_1146442_-	hypothetical protein	NA	NA	NA	NA
ATH71713.1\|1146738_1147650_-	DsbA family protein	NA	NA	NA	NA
ATH71714.1\|1147646_1148045_-	thiol management oxidoreductase	NA	NA	NA	NA
ATH71715.1\|1148322_1149087_-	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	1.1e-36	68.1
ATH71716.1\|1149112_1149688_-	CYTH domain-containing protein	NA	NA	NA	NA
ATH71717.1\|1149905_1150271_+	hypothetical protein	NA	NA	NA	NA
ATH71718.1\|1150304_1150934_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
ATH71719.1\|1150999_1151800_+	NAD kinase	NA	NA	NA	NA
ATH71720.1\|1151808_1152711_+	RluA family pseudouridine synthase	NA	NA	NA	NA
ATH71721.1\|1152751_1153495_-	bis(5'-nucleosyl)-tetraphosphatase PrpE	S4TT53	Salmonella_phage	1.7e-07	24.0
ATH71722.1\|1153655_1155503_+	sodium:proton antiporter	NA	NA	NA	NA
ATH71723.1\|1155744_1156455_+	thiaminase II	NA	NA	NA	NA
ATH71724.1\|1156429_1157047_+	thiazole tautomerase TenI	NA	NA	NA	NA
ATH71725.1\|1157030_1158143_+	glycine oxidase ThiO	NA	NA	NA	NA
ATH71726.1\|1158139_1158343_+	sulfur carrier protein ThiS	NA	NA	NA	NA
ATH71727.1\|1158347_1159115_+	thiazole synthase	NA	NA	NA	NA
ATH71728.1\|1159111_1160125_+	thiazole biosynthesis adenylyltransferase ThiF	NA	NA	NA	NA
ATH71729.1\|1160142_1160949_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
ATH71730.1\|1161098_1161875_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA
ATH71731.1\|1161988_1162564_+\|coat	spore coat protein	NA	NA	NA	NA
ATH71732.1\|1162601_1163045_-\|coat	spore coat protein	NA	NA	NA	NA
ATH71733.1\|1163257_1163749_-\|coat	spore coat protein	NA	NA	NA	NA
ATH71734.1\|1163896_1164382_-\|coat	spore coat protein	NA	NA	NA	NA
ATH71735.1\|1164470_1164806_-\|coat	spore coat protein	NA	NA	NA	NA
ATH71736.1\|1164850_1165237_-\|coat	spore coat protein	NA	NA	NA	NA

DBSCAN-SWA_4

1171851 : 1220729

Clostridium_phage(24.32%)

holin,terminase,tail,plate,capsid,integrase,portal

attL 1174302:1174347|attR 1226763:1226808

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATH71746.1\|1171851_1172970_+	methionine biosynthesis PLP-dependent protein	A0A0B5JD48	Pandoravirus	1.2e-15	25.6
ATH71747.1\|1172966_1174145_+	cystathionine beta-lyase MetC	NA	NA	NA	NA
1174302:1174347	attL	NA	NA	NA	NA
ATH71748.1\|1174440_1175676_-\|integrase	site-specific integrase	A0A0K2CZ62	Paenibacillus_phage	6.5e-108	49.8
ATH71749.1\|1175668_1176172_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	3.4e-23	34.4
ATH71750.1\|1176269_1176875_-	DUF4352 domain-containing protein	NA	NA	NA	NA
ATH74398.1\|1176948_1177311_-	XRE family transcriptional regulator	A8ATX5	Listeria_phage	1.0e-08	42.9
ATH71751.1\|1177481_1177679_+	XRE family transcriptional regulator	A8ATX6	Listeria_phage	2.3e-12	54.7
ATH71752.1\|1177724_1177919_+	DNA-binding protein	U5P0W4	Brevibacillus_phage	4.8e-10	54.2
ATH71753.1\|1178021_1178273_+	XRE family transcriptional regulator	NA	NA	NA	NA
ATH71754.1\|1178275_1178545_+	hypothetical protein	NA	NA	NA	NA
ATH71755.1\|1178905_1179097_+	hypothetical protein	NA	NA	NA	NA
ATH71756.1\|1179129_1179351_+	hypothetical protein	NA	NA	NA	NA
ATH71757.1\|1179461_1180373_+	hypothetical protein	A0A0A7RUE9	Clostridium_phage	2.3e-86	62.0
ATH71758.1\|1180332_1181133_+	hypothetical protein	A0A0A7RUC1	Clostridium_phage	3.3e-60	46.3
ATH71759.1\|1181132_1181318_+	hypothetical protein	NA	NA	NA	NA
ATH71760.1\|1181346_1182207_+	hypothetical protein	I1W658	Staphylococcus_phage	4.1e-08	32.0
ATH74399.1\|1182212_1182500_+	hypothetical protein	NA	NA	NA	NA
ATH71761.1\|1182471_1183764_+	replicative DNA helicase	D2XR44	Bacillus_phage	3.0e-95	44.2
ATH74400.1\|1183778_1183973_+	hypothetical protein	NA	NA	NA	NA
ATH71762.1\|1183969_1184419_+	RusA family crossover junction endodeoxyribonuclease	S6B1L9	Thermus_phage	2.5e-49	65.2
ATH71763.1\|1184406_1185093_+	hypothetical protein	NA	NA	NA	NA
ATH71764.1\|1185224_1185509_+	hypothetical protein	NA	NA	NA	NA
ATH71765.1\|1185580_1185778_+	hypothetical protein	NA	NA	NA	NA
ATH71766.1\|1185825_1187079_+	hypothetical protein	NA	NA	NA	NA
ATH71767.1\|1187103_1187487_+	ArpU family transcriptional regulator	Q9ZXB9	Bacillus_phage	4.1e-21	49.2
ATH71768.1\|1187583_1188330_+	APC family permease	NA	NA	NA	NA
ATH71769.1\|1190302_1190707_+	hypothetical protein	NA	NA	NA	NA
ATH71770.1\|1191173_1191356_+	hypothetical protein	NA	NA	NA	NA
ATH71771.1\|1191450_1191795_+	structural protein	Q38579	Bacillus_phage	3.2e-25	54.4
ATH71772.1\|1191862_1192327_+	hypothetical protein	NA	NA	NA	NA
ATH71773.1\|1192379_1193657_+	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	1.7e-82	41.7
ATH71774.1\|1193797_1194046_+	hypothetical protein	NA	NA	NA	NA
ATH71775.1\|1194114_1194411_+	hypothetical protein	NA	NA	NA	NA
ATH71776.1\|1194514_1195399_+\|terminase	terminase	D2IZ90	Enterococcus_phage	4.7e-28	37.2
ATH71777.1\|1195395_1196703_+\|terminase	PBSX family phage terminase large subunit	A0A2P1JTW5	Anoxybacillus_phage	3.7e-154	67.0
ATH71778.1\|1196702_1198223_+\|portal	phage portal protein	A0A1B1P7C8	Bacillus_phage	1.1e-138	50.8
ATH71779.1\|1198219_1199122_+	hypothetical protein	A0A1B1P7D7	Bacillus_phage	2.3e-46	37.9
ATH71780.1\|1199169_1200432_+	hypothetical protein	NA	NA	NA	NA
ATH71781.1\|1200467_1201628_+\|terminase	terminase	A0A1B1P7E4	Bacillus_phage	1.3e-81	51.9
ATH71782.1\|1201651_1202581_+\|capsid	phage major capsid protein	A0A1B1P7E3	Bacillus_phage	7.0e-107	65.5
ATH71783.1\|1202586_1202973_+	hypothetical protein	NA	NA	NA	NA
ATH71784.1\|1202978_1203371_+	DUF3199 family protein	NA	NA	NA	NA
ATH71785.1\|1203367_1203724_+	DUF3599 family protein	NA	NA	NA	NA
ATH71786.1\|1203720_1204227_+	HK97 gp10 family phage protein	A0A249XXA4	Clostridium_phage	4.8e-41	48.8
ATH71787.1\|1204231_1204687_+\|portal	phage portal protein	NA	NA	NA	NA
ATH74401.1\|1204697_1204895_+	hypothetical protein	NA	NA	NA	NA
ATH71788.1\|1204897_1206244_+\|tail	phage tail sheath protein	A0A0A7S087	Clostridium_phage	8.4e-85	41.9
ATH71789.1\|1206245_1206689_+\|portal	phage portal protein	A0A0A7RVP1	Clostridium_phage	1.3e-26	45.8
AZL49588.1\|1206998_1207088_-\|holin	putative holin-like toxin	NA	NA	NA	NA
ATH71791.1\|1207240_1207690_+\|portal	phage portal protein	A0A0A7RTY8	Clostridium_phage	1.0e-10	35.8
ATH71793.1\|1207869_1212834_+	transglycosylase	A0A1L2JY60	Aeribacillus_phage	5.9e-43	41.3
ATH71794.1\|1212826_1213489_+	LysM peptidoglycan-binding domain-containing protein	A0A0K2SUI2	Clostridium_phage	1.9e-26	32.1
ATH71795.1\|1213500_1214598_+\|portal	phage portal protein	H7BV96	unidentified_phage	5.3e-37	28.6
ATH71796.1\|1214594_1214876_+	DUF2577 domain-containing protein	S6C459	Thermus_phage	5.9e-09	40.4
ATH71797.1\|1214875_1215304_+	DUF2634 domain-containing protein	A0A0A7RTU4	Clostridium_phage	3.3e-11	33.3
ATH71798.1\|1215296_1216343_+\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	1.4e-58	38.4
ATH71799.1\|1216329_1217253_+	DUF2313 domain-containing protein	A0A0A7RTT8	Clostridium_phage	5.5e-11	27.7
ATH71800.1\|1217265_1217649_+	hypothetical protein	NA	NA	NA	NA
ATH71801.1\|1217666_1218797_+	hypothetical protein	A0A2H4J4R1	uncultured_Caudovirales_phage	7.1e-37	61.7
ATH71802.1\|1218802_1219177_+	hypothetical protein	M4ZR44	Bacillus_phage	2.1e-09	40.7
ATH74402.1\|1219176_1219317_+	XkdX family protein	A0A2H4JD72	uncultured_Caudovirales_phage	3.6e-07	56.8
ATH74403.1\|1219378_1219591_+	hypothetical protein	A0A290GDY2	Caldibacillus_phage	1.0e-13	56.5
ATH71803.1\|1219606_1219870_+\|holin	phage holin	A0A2H4J6M0	uncultured_Caudovirales_phage	8.8e-31	75.9
ATH71804.1\|1219928_1220729_+	N-acetylmuramoyl-L-alanine amidase	Q9ZXD7	Bacillus_phage	3.4e-65	70.1
1226763:1226808	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1752965 : 1759213

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATH72328.1\|1752965_1753358_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	G3MBF1	Bacillus_virus	8.8e-27	56.5
ATH72329.1\|1753317_1755420_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	U5PY35	Bacillus_phage	0.0e+00	82.8
ATH72330.1\|1755437_1756418_+	class 1b ribonucleoside-diphosphate reductase subunit beta	F8WQ21	Bacillus_phage	1.4e-150	80.9
ATH72331.1\|1756501_1757119_+	hypothetical protein	A0A127AYS1	Bacillus_phage	2.3e-45	45.3
ATH72332.1\|1757174_1757933_-	N-acetylmuramoyl-L-alanine amidase	A0A0N6W8I1	Bacillus_phage	8.7e-47	53.8
ATH72333.1\|1758253_1759213_+	stage V sporulation protein K	G3MAX6	Bacillus_virus	3.9e-52	39.6

DBSCAN-SWA_6

2100162 : 2107870

Ostreococcus_lucimarinus_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATH72669.1\|2100162_2101254_-	3-dehydroquinate synthase	E5ERI4	Ostreococcus_lucimarinus_virus	8.2e-22	27.6
ATH72670.1\|2101253_2102426_-	chorismate synthase	A0A291AU41	Pandoravirus	5.9e-42	35.2
ATH72671.1\|2102502_2103279_-	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA
ATH72672.1\|2103423_2103870_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.5e-27	42.3
ATH72673.1\|2103999_2104962_-	heptaprenyl diphosphate synthase component II	A0A1V0SE37	Indivirus	1.7e-07	26.0
ATH72674.1\|2104986_2105691_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA
ATH72675.1\|2105694_2106462_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA
ATH72676.1\|2106577_2106808_-	trp RNA-binding attenuation protein MtrB	NA	NA	NA	NA
ATH72677.1\|2106831_2107401_-	GTP cyclohydrolase I FolE	E7DN69	Pneumococcus_phage	1.8e-49	57.3
ATH72678.1\|2107591_2107870_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	5.6e-28	74.2

DBSCAN-SWA_7

2145723 : 2153880

Staphylococcus_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATH72720.1\|2145723_2146875_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.9e-24	37.7
ATH72721.1\|2146985_2147465_-	DUF3907 family protein	NA	NA	NA	NA
ATH72722.1\|2147578_2148172_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	9.0e-15	36.0
ATH72723.1\|2148161_2148920_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	6.5e-10	36.8
ATH72724.1\|2149130_2149223_+	YjcZ family sporulation protein	NA	NA	NA	NA
ATH72725.1\|2149350_2150703_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	1.9e-89	42.4
ATH72726.1\|2150886_2151411_+	DUF309 domain-containing protein	NA	NA	NA	NA
ATH72727.1\|2151636_2151990_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
ATH72728.1\|2152103_2152568_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.1e-43	66.0
ATH72729.1\|2152594_2153218_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	2.6e-57	58.6
ATH72730.2\|2153229_2153880_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	6.1e-41	40.8

DBSCAN-SWA_8

2509896 : 2573429

Moraxella_phage(16.67%)

tRNA,coat,tail,integrase,protease

attL 2557522:2557557|attR 2573561:2573596

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATH73111.1\|2509896_2512539_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	1.6e-159	41.9
ATH73112.1\|2512997_2513186_+	hypothetical protein	NA	NA	NA	NA
ATH73113.1\|2513265_2514297_-\|coat	spore coat protein YsxE	NA	NA	NA	NA
ATH73114.1\|2514334_2515579_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
ATH73115.1\|2515910_2517203_-	glutamate-1-semialdehyde-2,1-aminomutase	NA	NA	NA	NA
ATH73116.1\|2517230_2518202_-	porphobilinogen synthase	NA	NA	NA	NA
ATH73117.1\|2518198_2518990_-	uroporphyrinogen-III synthase	NA	NA	NA	NA
ATH73118.1\|2518986_2519922_-	hydroxymethylbilane synthase	NA	NA	NA	NA
ATH73119.1\|2519959_2520790_-	cytochrome C assembly protein	NA	NA	NA	NA
ATH73120.1\|2520797_2522165_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
ATH73121.1\|2522405_2522891_+	hypothetical protein	NA	NA	NA	NA
ATH73122.1\|2522935_2523523_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
ATH73123.1\|2523519_2525844_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	8.3e-181	43.9
ATH73124.1\|2526015_2527677_-\|protease	ATP-dependent protease LonB	A0A0R6PGP8	Moraxella_phage	1.9e-17	26.9
ATH73125.1\|2527815_2529081_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.3e-148	64.2
ATH73126.1\|2529332_2530607_-	trigger factor	NA	NA	NA	NA
ATH73127.1\|2530847_2531855_-	tetratricopeptide repeat protein	NA	NA	NA	NA
ATH73128.1\|2531978_2532578_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
ATH73129.1\|2532593_2534009_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
ATH73130.1\|2534051_2535149_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
ATH73131.1\|2535167_2536721_-	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	7.1e-11	27.3
ATH73132.1\|2536707_2537736_-	ketol-acid reductoisomerase	NA	NA	NA	NA
ATH73133.1\|2537754_2538273_-	acetolactate synthase small subunit	NA	NA	NA	NA
ATH73134.1\|2538269_2539994_-	acetolactate synthase large subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	2.8e-64	31.0
ATH73135.1\|2540372_2541287_-	branched-chain-amino-acid transaminase	NA	NA	NA	NA
ATH73136.1\|2541719_2542763_+	lactonase family protein	NA	NA	NA	NA
ATH73137.1\|2542958_2543378_-	DUF1232 domain-containing protein	A0A2I7S9Z5	Vibrio_phage	1.2e-08	30.5
ATH73138.1\|2543473_2544640_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA
ATH73139.1\|2544639_2544876_-	D-alanine--poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA
ATH73140.1\|2544897_2546082_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	A0A125RNP0	Pseudomonas_phage	1.5e-16	27.9
ATH73141.1\|2546078_2547584_-	D-alanine--poly(phosphoribitol) ligase subunit 1	A0A2K9L3I8	Tupanvirus	2.5e-45	29.9
ATH73142.1\|2547598_2547742_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA
ATH73143.1\|2548002_2549277_-	DUF1668 domain-containing protein	NA	NA	NA	NA
ATH73144.1\|2550040_2550220_-	hypothetical protein	NA	NA	NA	NA
ATH73145.1\|2550420_2550735_+	hypothetical protein	NA	NA	NA	NA
ATH73146.1\|2551232_2551589_-	hypothetical protein	NA	NA	NA	NA
ATH73147.1\|2551630_2552260_-	hypothetical protein	NA	NA	NA	NA
ATH73148.1\|2552442_2552853_-	hypothetical protein	NA	NA	NA	NA
ATH73149.1\|2552885_2553737_-	hypothetical protein	C9E2Q0	Enterococcus_phage	9.8e-31	33.6
ATH74438.1\|2555329_2556208_-	amidinotransferase	NA	NA	NA	NA
ATH73150.1\|2556493_2556877_-	ArpU family transcriptional regulator	NA	NA	NA	NA
2557522:2557557	attL	NA	NA	NA	NA
ATH73151.1\|2557837_2558380_-	hypothetical protein	NA	NA	NA	NA
ATH73152.1\|2558469_2561253_-\|tail	phage tail tape measure protein	A0A0N9SJR9	Paenibacillus_phage	1.3e-92	41.5
ATH73153.1\|2561249_2561477_-	hypothetical protein	NA	NA	NA	NA
ATH73154.1\|2561536_2562247_-	hypothetical protein	NA	NA	NA	NA
ATH73155.1\|2562271_2562601_-	hypothetical protein	NA	NA	NA	NA
ATH73156.1\|2562800_2563133_-	XRE family transcriptional regulator	NA	NA	NA	NA
ATH73157.1\|2563233_2564166_-	hypothetical protein	NA	NA	NA	NA
ATH73158.1\|2564155_2564380_-	XRE family transcriptional regulator	NA	NA	NA	NA
ATH73159.1\|2565943_2566480_-	hypothetical protein	NA	NA	NA	NA
ATH73160.1\|2566476_2566824_-	hypothetical protein	NA	NA	NA	NA
ATH73161.1\|2566932_2567148_+	XRE family transcriptional regulator	NA	NA	NA	NA
ATH73162.1\|2567175_2567934_+	hypothetical protein	NA	NA	NA	NA
ATH73163.1\|2568015_2568858_+	hypothetical protein	NA	NA	NA	NA
ATH73164.1\|2569113_2569401_-	hypothetical protein	NA	NA	NA	NA
ATH73165.1\|2570145_2570433_-	hypothetical protein	NA	NA	NA	NA
ATH73166.1\|2570429_2570711_-	hypothetical protein	NA	NA	NA	NA
ATH73168.1\|2571716_2572253_-\|integrase	site-specific integrase	A0A2H4J6I5	uncultured_Caudovirales_phage	2.6e-37	47.5
ATH73169.1\|2572433_2573429_-\|integrase	site-specific integrase	NA	NA	NA	NA
2573561:2573596	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2836375 : 2863869

Bacillus_phage(28.0%)

holin,terminase,plate,tail,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATH73416.1\|2836375_2837194_-	N-acetylmuramoyl-L-alanine amidase	Q9ZXD7	Bacillus_phage	8.5e-64	52.5
ATH73417.1\|2837213_2837477_-\|holin	phage holin	A0A2H4J6M0	uncultured_Caudovirales_phage	7.7e-27	69.0
ATH73418.1\|2837489_2837702_-	hypothetical protein	A0A290GDY2	Caldibacillus_phage	5.1e-13	53.6
ATH73419.1\|2837738_2837879_-	XkdX family protein	NA	NA	NA	NA
ATH73420.1\|2837878_2838199_-	hypothetical protein	O64053	Bacillus_phage	6.1e-18	45.2
ATH73421.1\|2838212_2839598_-	hypothetical protein	A0A1P8CWR7	Bacillus_phage	1.7e-27	31.6
ATH73422.1\|2839631_2840762_-	hypothetical protein	NA	NA	NA	NA
ATH73423.1\|2840769_2840943_-	XkdX family protein	A0A2H4JAA1	uncultured_Caudovirales_phage	2.6e-07	46.9
ATH73424.1\|2840939_2841269_-\|portal	phage portal protein	A0A2H4JCI0	uncultured_Caudovirales_phage	2.0e-08	34.6
ATH73425.1\|2841279_2842158_-	hypothetical protein	NA	NA	NA	NA
ATH73426.1\|2842173_2842557_-	hypothetical protein	NA	NA	NA	NA
ATH73427.1\|2842568_2843492_-	DUF2313 domain-containing protein	A0A0A7RTT8	Clostridium_phage	9.4e-11	28.5
ATH73428.1\|2843478_2844525_-\|plate	baseplate J/gp47 family protein	S6AVU3	Thermus_phage	1.9e-68	43.5
ATH73429.1\|2844517_2844940_-	DUF2634 domain-containing protein	NA	NA	NA	NA
ATH73430.1\|2844954_2845221_-	DUF2577 domain-containing protein	S6C459	Thermus_phage	6.2e-08	37.5
ATH73431.1\|2845217_2846228_-\|portal	phage portal protein	H7BV96	unidentified_phage	1.0e-34	28.4
ATH73432.1\|2846239_2846908_-	LysM peptidoglycan-binding domain-containing protein	A0A0K2SUI2	Clostridium_phage	2.9e-22	29.6
ATH73433.1\|2846900_2850869_-	transglycosylase	A0A1L2JY60	Aeribacillus_phage	7.3e-44	45.3
ATH73434.1\|2850924_2851062_-	hypothetical protein	NA	NA	NA	NA
ATH74449.1\|2851103_2851544_-\|portal	phage portal protein	A0A0A7RTY8	Clostridium_phage	1.7e-10	35.8
ATH73435.1\|2851696_2851786_+\|holin	putative holin-like toxin	NA	NA	NA	NA
ATH73436.1\|2852062_2852506_-\|portal	phage portal protein	A0A0A7RVP1	Clostridium_phage	7.6e-27	46.5
ATH73437.1\|2852507_2853854_-\|tail	phage tail sheath protein	A0A0A7RTT5	Clostridium_phage	1.1e-76	40.3
ATH73438.1\|2853857_2854070_-	hypothetical protein	NA	NA	NA	NA
ATH73439.1\|2854056_2854512_-\|portal	phage portal protein	NA	NA	NA	NA
ATH73440.1\|2854516_2855014_-	HK97 gp10 family phage protein	A0A249XXA4	Clostridium_phage	5.3e-37	46.2
ATH73441.1\|2855010_2855367_-	DUF3599 family protein	NA	NA	NA	NA
ATH73442.1\|2855363_2855747_-	DUF3199 family protein	NA	NA	NA	NA
ATH73443.1\|2855760_2856684_-\|capsid	phage major capsid protein	A0A1B1P7E3	Bacillus_phage	4.4e-109	64.3
ATH73444.1\|2856706_2857798_-\|terminase	terminase	A0A1B1P7E4	Bacillus_phage	5.2e-61	40.9
ATH73445.1\|2857832_2859290_-\|portal	phage portal protein	A0A1B1P7C8	Bacillus_phage	1.9e-138	53.0
ATH73446.1\|2859286_2860600_-\|terminase	PBSX family phage terminase large subunit	M4ZRM5	Bacillus_phage	5.4e-153	62.2
ATH73447.1\|2860596_2861244_-	hypothetical protein	A0A2P1JTW4	Anoxybacillus_phage	2.5e-42	43.7
ATH73448.1\|2861396_2861915_-	sigma-70 family RNA polymerase sigma factor	A0A2H4J6J3	uncultured_Caudovirales_phage	5.8e-34	46.2
ATH73449.1\|2862039_2862246_-	hypothetical protein	A0A2H4J4M6	uncultured_Caudovirales_phage	9.0e-15	68.5
ATH73450.1\|2862242_2862647_-	holliday junction resolvase	NA	NA	NA	NA
ATH73451.1\|2862749_2862932_-	hypothetical protein	NA	NA	NA	NA
ATH73452.1\|2863092_2863332_-	XRE family transcriptional regulator	NA	NA	NA	NA
ATH73453.1\|2863491_2863869_+	XRE family transcriptional regulator	A0A2H4J6F9	uncultured_Caudovirales_phage	1.6e-17	45.4

DBSCAN-SWA_10

3102951 : 3111709

Thermus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATH73683.1\|3102951_3104964_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	1.0e-25	26.9
ATH73684.1\|3105796_3106267_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	1.4e-47	62.5
ATH73685.1\|3106406_3108746_-	ribonuclease R	Q0GXV6	Lactococcus_phage	1.2e-91	41.2
ATH73686.1\|3108765_3109512_-	alpha/beta fold hydrolase	NA	NA	NA	NA
ATH73687.1\|3109635_3109869_-	preprotein translocase subunit SecG	NA	NA	NA	NA
ATH73688.1\|3110056_3110347_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	8.8e-08	47.5
ATH73689.1\|3110384_3110618_-	XRE family transcriptional regulator	NA	NA	NA	NA
ATH73690.1\|3110772_3111177_+	XRE family transcriptional regulator	S6C481	Thermus_phage	4.2e-16	43.3
ATH73691.1\|3111307_3111709_+	transcriptional regulator	S6C481	Thermus_phage	7.6e-18	55.1

DBSCAN-SWA_11

3177448 : 3186452

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATH73756.1\|3177448_3178429_+	D-glycerate dehydrogenase	M1HTA3	Paramecium_bursaria_Chlorella_virus	4.9e-18	26.9
ATH73757.1\|3178581_3179097_+	ribonuclease	NA	NA	NA	NA
ATH73758.1\|3179148_3179892_-	arylamine N-acetyltransferase	NA	NA	NA	NA
ATH73759.1\|3179931_3180189_-	HPr family phosphocarrier protein	NA	NA	NA	NA
ATH73760.1\|3180215_3181166_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.6e-51	38.1
ATH73761.1\|3181183_3182143_-	YvcK family protein	A1IMD5	Streptococcus_phage	3.2e-62	40.4
ATH73762.1\|3182143_3183067_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	4.5e-05	26.3
ATH73763.1\|3183070_3183535_-	8-oxo-dGTP diphosphatase	NA	NA	NA	NA
ATH74461.1\|3183893_3184844_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	6.3e-87	53.6
ATH73764.1\|3185078_3186452_-	peptidase C40	A0A0A0RVE6	Bacillus_phage	8.1e-27	54.3

DBSCAN-SWA_12

3437271 : 3482764

Escherichia_phage(28.57%)

tRNA,coat,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATH74004.1\|3437271_3438945_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
ATH74005.1\|3438941_3439364_-	DUF1934 family protein	NA	NA	NA	NA
ATH74006.1\|3439910_3440783_-	agmatinase	NA	NA	NA	NA
ATH74007.1\|3440852_3441683_-	spermidine synthase	NA	NA	NA	NA
ATH74008.1\|3441908_3443978_+	penicillin-binding protein	NA	NA	NA	NA
ATH74009.1\|3444103_3444622_-	hypothetical protein	NA	NA	NA	NA
ATH74010.1\|3444634_3445297_-\|protease	site-2 protease family protein	NA	NA	NA	NA
ATH74011.1\|3445404_3445590_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
ATH74012.1\|3445642_3446455_-	peptidase M84	NA	NA	NA	NA
ATH74013.1\|3446829_3448158_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
ATH74014.1\|3448197_3449082_-	LysR family transcriptional regulator	NA	NA	NA	NA
ATH74015.1\|3449232_3449784_+	FMN reductase (NADPH)	NA	NA	NA	NA
ATH74016.1\|3449767_3450793_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
ATH74017.1\|3450792_3451047_+	glutaredoxin family protein	NA	NA	NA	NA
ATH74018.1\|3451081_3451645_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
ATH74019.1\|3451658_3452420_+	amino acid ABC transporter permease	NA	NA	NA	NA
ATH74020.1\|3452437_3453280_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
ATH74021.1\|3453296_3454007_+	ABC transporter permease subunit	NA	NA	NA	NA
ATH74022.1\|3454003_3454747_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-33	39.2
ATH74023.1\|3454851_3455352_-	YwgA family protein	NA	NA	NA	NA
ATH74024.1\|3455382_3456684_-	HD domain-containing protein	A0A1V0SGM3	Hokovirus	1.6e-24	30.3
ATH74025.1\|3456854_3457076_-	DUF1450 domain-containing protein	NA	NA	NA	NA
ATH74026.1\|3457318_3458110_+	RsfA family transcriptional regulator	NA	NA	NA	NA
ATH74027.1\|3458145_3458379_-	hypothetical protein	NA	NA	NA	NA
ATH74028.1\|3458375_3460652_-	glycosyltransferase	NA	NA	NA	NA
ATH74029.1\|3460755_3461241_-	tetratricopeptide repeat protein	NA	NA	NA	NA
ATH74030.1\|3461276_3462122_-	lipoate--protein ligase family protein	NA	NA	NA	NA
ATH74031.1\|3462358_3462754_-	SMI1/KNR4 family protein	NA	NA	NA	NA
ATH74032.1\|3462919_3463360_-	SMI1/KNR4 family protein	NA	NA	NA	NA
ATH74033.1\|3463359_3465147_-\|transposase	transposase	NA	NA	NA	NA
ATH74034.1\|3465158_3465437_-	hypothetical protein	NA	NA	NA	NA
ATH74035.1\|3465441_3465840_-	DUF5082 domain-containing protein	NA	NA	NA	NA
ATH74036.1\|3466021_3466993_-	phosphate acetyltransferase	NA	NA	NA	NA
ATH74037.1\|3467232_3468003_+	heme-dependent peroxidase	NA	NA	NA	NA
ATH74038.1\|3468070_3469231_+	MFS transporter	NA	NA	NA	NA
ATH74039.1\|3469246_3469726_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
ATH74040.1\|3469871_3471104_+	MFS transporter	NA	NA	NA	NA
ATH74041.1\|3471253_3471859_+	bacilysin biosynthesis protein BacA	NA	NA	NA	NA
ATH74042.1\|3471860_3472568_+	cupin domain-containing protein	NA	NA	NA	NA
ATH74043.1\|3472564_3473326_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.1e-25	33.5
ATH74044.1\|3473341_3474763_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
ATH74045.1\|3474777_3475974_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
ATH74046.1\|3475989_3476787_-	SDR family oxidoreductase	NA	NA	NA	NA
ATH74047.1\|3476873_3477329_-\|coat	spore coat protein	NA	NA	NA	NA
ATH74048.1\|3477321_3478176_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.2e-33	36.4
ATH74049.1\|3478179_3479145_-	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	3.2e-78	45.6
ATH74050.1\|3479141_3479882_-	glucose-1-phosphate thymidylyltransferase	G3MA50	Bacillus_virus	2.7e-45	41.6
ATH74051.1\|3479884_3480913_-\|coat	spore coat protein	NA	NA	NA	NA
ATH74052.1\|3480909_3481650_-\|coat	spore coat protein	NA	NA	NA	NA
ATH74053.1\|3481639_3482764_-\|coat	spore coat protein	A0A1B1IVE2	uncultured_Mediterranean_phage	5.8e-23	29.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage