CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP035180	Klebsiella pneumoniae strain BA33875 plasmid pBA33875_IncFIB, complete sequence	0 crisprs	RT,csa3	0	2
CP035181	Klebsiella pneumoniae strain BA33875 plasmid pBA33875_KPC2, complete sequence	0 crisprs	NA	0	0
CP035182	Klebsiella pneumoniae strain BA33875 plasmid pBA33875_IncR, complete sequence	0 crisprs	RT	0	0
CP035179	Klebsiella pneumoniae strain BA33875 chromosome, complete genome	3 crisprs	DEDDh,DinG,cas3,csa3,WYL,RT	1	9

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

126399 : 194749

Bacillus_phage(20.0%)

transposase,integrase

attL 178993:179008|attR 196326:196341

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT12428.1\|126399_127607_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
QAT12325.1\|129035_129467_-	silver-binding protein SilE	NA	NA	NA	NA
QAT12326.1\|129717_131193_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
QAT12429.1\|131185_131866_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
QAT12327.1\|133468_133822_+	copper ABC transporter substrate-binding protein	NA	NA	NA	NA
QAT12328.1\|133935_135228_+	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB	NA	NA	NA	NA
QAT12329.1\|135238_138385_+	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	4.0e-61	22.5
QAT12330.1\|138471_138912_+	hypothetical protein	NA	NA	NA	NA
QAT12331.1\|141525_141723_+	DUF2933 domain-containing protein	NA	NA	NA	NA
QAT12332.1\|141756_142494_-	peptidase M23	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
QAT12333.1\|142782_143232_-	copper resistance protein	NA	NA	NA	NA
QAT12430.1\|145279_146176_+	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
QAT12334.1\|146215_146596_+	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
QAT12335.1\|147584_148265_+	copper response regulator transcription factor PcoR	W8CYM9	Bacillus_phage	8.7e-30	34.4
QAT12336.1\|148261_149662_+	sensor histidine kinase	W8CYF6	Bacillus_phage	4.1e-18	26.3
QAT12337.1\|149878_150313_+	copper resistance system metallochaperone PcoE	NA	NA	NA	NA
QAT12338.1\|150541_150721_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
QAT12339.1\|152463_152973_+	porin	NA	NA	NA	NA
QAT12340.1\|153019_153517_-	N-acetyltransferase	NA	NA	NA	NA
QAT12341.1\|153848_154175_+	transcriptional regulator	NA	NA	NA	NA
QAT12431.1\|154174_154885_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
QAT12342.1\|154893_155439_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
QAT12343.1\|155514_155877_+	arsenic metallochaperone ArsD family protein	NA	NA	NA	NA
QAT12344.1\|155895_157236_+	hypothetical protein	NA	NA	NA	NA
QAT12345.1\|157774_158311_+	N-acetyltransferase	NA	NA	NA	NA
QAT12346.1\|158780_160070_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
QAT12347.1\|160117_161869_-	arsenical pump-driving ATPase	NA	NA	NA	NA
QAT12348.1\|161886_162249_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
QAT12349.1\|162298_162649_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
QAT12350.1\|163006_163276_+	hypothetical protein	NA	NA	NA	NA
QAT12351.1\|163263_163839_+	hypothetical protein	NA	NA	NA	NA
QAT12352.1\|164406_164775_+	hypothetical protein	NA	NA	NA	NA
QAT12353.1\|164808_165012_+	hemolysin expression modulator Hha	NA	NA	NA	NA
QAT12354.1\|165060_165318_+	hypothetical protein	NA	NA	NA	NA
QAT12355.1\|165393_165648_+	hypothetical protein	NA	NA	NA	NA
QAT12356.1\|165823_166090_+	DUF1778 domain-containing protein	NA	NA	NA	NA
QAT12357.1\|166077_166560_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
QAT12358.1\|166775_168173_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
QAT12359.1\|169509_170451_-	hypothetical protein	NA	NA	NA	NA
QAT12360.1\|170447_170963_-	thermonuclease family protein	V5UN65	Mycobacterium_phage	1.1e-08	28.9
QAT12361.1\|171185_172613_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	2.8e-102	55.6
QAT12362.1\|172741_172912_+	hypothetical protein	NA	NA	NA	NA
QAT12363.1\|172936_174256_+	DUF1173 family protein	NA	NA	NA	NA
QAT12364.1\|174269_174473_+	hypothetical protein	NA	NA	NA	NA
QAT12365.1\|174527_175748_-	hypothetical protein	NA	NA	NA	NA
QAT12432.1\|175750_176563_-	DUF4942 domain-containing protein	NA	NA	NA	NA
QAT12366.1\|177071_177740_+	hypothetical protein	NA	NA	NA	NA
178993:179008	attL	NA	NA	NA	NA
QAT12367.1\|179388_179961_-	recombinase family protein	M9Q1K0	Clostridium_phage	3.4e-19	39.4
QAT12368.1\|180097_180688_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
QAT12369.1\|180939_181269_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2
QAT12370.1\|181249_181531_+	XRE family transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
QAT12371.1\|182939_183863_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.3e-174	99.3
QAT12372.1\|184262_184910_+	HAD-IB family hydrolase	NA	NA	NA	NA
QAT12373.1\|185246_186488_-	tellurium resistance protein TerF	A0A2D1GNA9	Pseudoalteromonas_phage	4.8e-10	25.1
QAT12433.1\|187005_187365_-	oxacillinase-carbenicillinase	NA	NA	NA	NA
QAT12434.1\|188741_189293_-	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
QAT12374.1\|189525_190083_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
QAT12375.1\|192756_193461_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QAT12435.1\|193494_193767_-\|transposase	transposase	NA	NA	NA	NA
QAT12376.1\|193735_194749_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
196326:196341	attR	NA	NA	NA	NA

DBSCAN-SWA_2

211924 : 220929

Escherichia_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT12386.1\|211924_212629_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
QAT12387.1\|213089_214178_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
QAT12388.1\|214264_214525_-	hypothetical protein	A0A077SK33	Escherichia_phage	1.9e-41	100.0
QAT12389.1\|214822_215683_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
QAT12390.1\|215703_216465_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
QAT12391.1\|216722_217625_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
QAT12392.1\|218892_219513_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
QAT12393.1\|220224_220929_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP035179

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CRISPR-Cas detection and classification

Crispr_ID: CP035179_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035179_1

439983-440087

Orphan

Consensus_repeat	Method
GCGCAGTGCTCTGGCTGGCCGGTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035179_1

>merge|CP035179|1|439983-440087|CRISPRCasFinder
GCGCAGTGCTCTGGCTGGCCGGTGGTTGGTTATGGGCGGCCATTCGAACCAGCTTCCGCAGCTTAACCTGCGCGCATGGCCGCGCAGTGCTCTGGCTGGCCGGTG

>CP035179|1|1|439983-440087|CRISPRCasFinder
GCGCAGTGCTCTGGCTGGCCGGTG	GTTGGTTATGGGCGGCCATTCGAACCAGCTTCCGCAGCTTAACCTGCGCGCATGGCC
GCGCAGTGCTCTGGCTGGCCGGTG

Protein	Signature genes	Signature genes Name	Protein_function
CP035179.1\|QAT07475.1\|437680_438010_+\|DUF1869-domain-containing-protein	unknown	unknown	gnl\|CDD\|370209
CP035179.1\|QAT07477.1\|440403_441450_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133415
CP035179.1\|QAT07472.1\|434672_435116_+\|type-VI-secretion-system-baseplate-subunit-TssE	unknown	unknown	gnl\|CDD\|274540
CP035179.1\|QAT07485.1\|449740_450553_+\|tetratricopeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|182854
CP035179.1\|QAT07483.1\|447414_448497_+\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
CP035179.1\|QAT07484.1\|449344_449737_+\|SirB-family-protein	unknown	unknown	gnl\|CDD\|182351
CP035179.1\|QAT07482.1\|446115_447372_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
CP035179.1\|QAT07470.1\|427171_428383_+\|hypothetical-protein	unknown	unknown	unknown
CP035179.1\|QAT07474.1\|436682_437597_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380524
CP035179.1\|QAT12017.1\|426894_427167_+\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269829
CP035179.1\|QAT07478.1\|441450_443130_-\|C4-dicarboxylic-acid-transporter-DauA	unknown	unknown	gnl\|CDD\|183265
CP035179.1\|QAT12016.1\|426477_426885_+\|hypothetical-protein	unknown	unknown	unknown
CP035179.1\|QAT12018.1\|433106_434153_+\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|377755
CP035179.1\|QAT07476.1\|438092_439184_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
CP035179.1\|QAT12019.1\|448496_449345_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
CP035179.1\|QAT07471.1\|434127_434670_+\|type-VI-secretion-system-lipoprotein-TssJ	unknown	unknown	gnl\|CDD\|378947
CP035179.1\|QAT07473.1\|435135_436551_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372143
CP035179.1\|QAT07481.1\|445233_445845_-\|lipoprotein-localization-protein-LolB	unknown	unknown	gnl\|CDD\|234578
CP035179.1\|QAT07480.1\|444385_445237_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
CP035179.1\|QAT07479.1\|443254_444202_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929

Protein	Function_ID	Function_description	E-value
CP035179.1\|QAT07475.1\|437680_438010_+\|DUF1869-domain-containing-protein	gnl\|CDD\|370209	pfam08956, DUF1869, Domain of unknown function (DUF1869). This domain is found in a set of hypothetical bacterial proteins.	0.00143893
CP035179.1\|QAT07477.1\|440403_441450_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133415	cd04788, HTH_NolA-AlbR, Helix-Turn-Helix DNA binding domain of the transcription regulators NolA and AlbR. Helix-turn-helix (HTH) transcription regulators NolA and AlbR, N-terminal domain. In Bradyrhizobium (Arachis) sp. NC92, NolA is required for efficient nodulation of host plants. In Xanthomonas albilineans, AlbR regulates the expression of the pathotoxin, albicidin. These proteins are putatively comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	4.80364e-30
CP035179.1\|QAT07472.1\|434672_435116_+\|type-VI-secretion-system-baseplate-subunit-TssE	gnl\|CDD\|274540	TIGR03357, hypothetical_protein_Atu4338, type VI secretion system lysozyme-like protein. The description for Pfam family pfam04965 cites acidic lysozyme activity for some phage-encoded members. This family represents a different subgroup of the proteins from pfam04965, where all members are associated with bacterial type VI secretion system genomic contexts.	1.04823e-26
CP035179.1\|QAT07485.1\|449740_450553_+\|tetratricopeptide-repeat-containing-protein	gnl\|CDD\|182854	PRK10941, PRK10941, tetratricopeptide repeat-containing protein.	0
CP035179.1\|QAT07483.1\|447414_448497_+\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
CP035179.1\|QAT07484.1\|449344_449737_+\|SirB-family-protein	gnl\|CDD\|182351	PRK10278, PRK10278, SirB family protein.	1.4579e-71
CP035179.1\|QAT07482.1\|446115_447372_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
CP035179.1\|QAT07474.1\|436682_437597_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380524	cd06301, PBP1_rhizopine_binding-like, periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily.	1.41157e-131
CP035179.1\|QAT12017.1\|426894_427167_+\|PAAR-domain-containing-protein	gnl\|CDD\|269829	cd14744, PAAR_CT_2, proline-alanine-alanine-arginine (PAAR) domain with uncharacterized C-terminal extension. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family of mostly beta- and gamma-proteobacteria, and forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). Most members contain C-terminal domain extensions corresponding to several uncharacterized domains such as S-type pyocin, DUF2235, DUF2345 and cytotoxic proteins. However, these terminal domains are exposed to solution, and do not distort the binding site of VgrG. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes.	5.23869e-27
CP035179.1\|QAT07478.1\|441450_443130_-\|C4-dicarboxylic-acid-transporter-DauA	gnl\|CDD\|183265	PRK11660, PRK11660, putative transporter; Provisional.	0
CP035179.1\|QAT12018.1\|433106_434153_+\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|377755	pfam06996, T6SS_TssG, Type VI secretion, TssG. This is a family of Gram-negative bacterial proteins that form part of the type VI pathogenicity secretion system (T6SS), including TssG. TssG is homologs to phage tail proteins and is required for proper assembly of the Hcp tube in bacteria.One other member in this family, SciB (Q93IT4) from Salmonella enterica, is thought to be involved in virulence.	1.71752e-89
CP035179.1\|QAT07476.1\|438092_439184_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
CP035179.1\|QAT12019.1\|448496_449345_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	4.05325e-138
CP035179.1\|QAT07471.1\|434127_434670_+\|type-VI-secretion-system-lipoprotein-TssJ	gnl\|CDD\|378947	pfam12790, T6SS-SciN, Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113. One of the virulence mechanisms of E coli is the production of toxins which it produces from dedicated machineries called secretion systems. Seven secretion systems have been described, which assemble from 3 to up to more than 20 subunits. These secretion systems derive from or have co-evolved with bacterial organelles such as ABC transporters (type I), type IV pili (type 2), flagella (type 3), or conjugative machines (type IV). The type VI secretion system (T6SS) is present in most pathogens that have contact with animals, plants, or humans. SciN is a lipoprotein tethered to the outer membrane and expressed in the periplasm of E coli and is essential for T6S-dependent secretion of the Hcp-like SciD protein and for biofilm formation.	2.09245e-39
CP035179.1\|QAT07473.1\|435135_436551_+\|hypothetical-protein	gnl\|CDD\|372143	pfam12486, VasL, Type VI secretion system, EvfB, or VasL. EvfB or VasL is a domain found on many Gram-negative proteins with an ImpA_N domain at the N-terminus. These proteins are expressed from the pathogenicity locus that forms the bacterial type VI secretion system. The exact function of VasL is not known. One E.coli member is annotated as being EvfB, though the E.coli equivalent of ImpA would be expected to be EvfG. It is possible that in many bacteria what is a single protein in one species, eg E.coli, is a fusion of two genes in others, which would explain an ImpA at the N-terminus and a VasL at the C-terminus.	3.11662e-55
CP035179.1\|QAT07481.1\|445233_445845_-\|lipoprotein-localization-protein-LolB	gnl\|CDD\|234578	PRK00022, lolB, lipoprotein localization protein LolB.	8.70605e-96
CP035179.1\|QAT07480.1\|444385_445237_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	0
CP035179.1\|QAT07479.1\|443254_444202_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0

>CP035179.1|QAT07476.1|438092_439184_-|redox-regulated-ATPase-YchF
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDKLAEIVKPQRILPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVAGKVNPAEDIDVINTELALSDLDTCERAIHRVSKKAKGGDKDAKVELAALEKCLPQLENAGMLRALDLTKEEKEAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVRAIAEQEGSVVVPVCAAVEADIAELDDEERDEFMAELGLEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTIAYEDFIAYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFLFNV
>CP035179.1|QAT07475.1|437680_438010_+|DUF1869-domain-containing-protein
MATARSGYTLQVIKAGQQGHVEMRWGHLADVDTRAAAAAIMQHIGRSSSSRGQQEISLSLTNAASGISVELHHPASGESATPAFIEAELKKIVQIVDGYEAAEDTHIVE
>CP035179.1|QAT07474.1|436682_437597_+|sugar-ABC-transporter-substrate-binding-protein
MKHCKIILLVGLLASSASALAEKIGVSMAYFDQNFLTIIRQSIEKEAQARHVDVQFEDARGDTGRQADQVQSFIASGVDAIIVDPVDSASTPQLTKMAQQAKMPLVYVNRTPGDKTLPPGVVFVGSDERESGTLQMEALAKLANYKGNVAIMIGNLTDAGALQRTKDVEQVVAKYPAMKVVQKQPANYSRSEGMDLMQNWTGNGEAIDIVAANNDEMAIGAAMALEKSQKKLLIGGIDATPDGLKALASDKIQVTIFQDAVGQGKTALAVALKLIKGEKVESHVWIPFELVTKENMQTYVEKSH
>CP035179.1|QAT07473.1|435135_436551_+|hypothetical-protein
MMTTHHDRHYKAGGDPRTLADFMALRAEMNKLSHPARPDINWPYAEQLARGLLEHHGADLQTVAWYTLARARLGGVAGINEGLTLMESLLVRQGKNLWPQALPARTEIFRTLSKRLRQVIRTLNLTPEDVESLEQAERSLQSFDAVLQRLEIAPENQLSDLRALLHSTATRFESLDPAPALPTAPPVAVSDAELPGTLVSKEDAAKVEPVPDLKRRPKAEPLAPPSPAKRPAPVAASTPAPVPRWKPFIAGMVTMLAVTGIAVGGWLVLRQSDLPPISVTQNAGPIPGLPATTPPGPVDLPQTQRQLGELARLAPDWAVSYGDQLVHQALIRWPDQAQPLAQQWRQQLSAGALPAENLTGWSEGMQQLQRLADQLNALDEQKGKYLTVSELKTAVFAITQSFNRAVPLEEQLRQLAALPVDQPWSAARGSLAELHLQQLIVEYALLKRKQPASPTAALPTTGEPSVSEAVK
>CP035179.1|QAT07472.1|434672_435116_+|type-VI-secretion-system-baseplate-subunit-TssE
MPRPSLYDILYGNFAGGLDLNTVSETDQVILSVLDNMQRILNCRAGTLAHLPDYGLPDMTAVLQGMPASAHQLMSTLSAVLLKYEPRLQRIAVVMLDQHAPGDLRYAIDAELKDIGLVRYGTEFMPEGRVLIRHLKRQQYLDARSAL
>CP035179.1|QAT07471.1|434127_434670_+|type-VI-secretion-system-lipoprotein-TssJ
MKMAITAVKPSARLLAFLMVTVLTGCGLTQTVKDGAVSVTQSIFYPQVKTLHLDLRAREGVNNNAKGASLATVVRIYQLKDRQAFDNTDYPSLFAGDGQALHADRVAEKDVRLRPGESVTVDMPMETSAQFVAVAAMFIDPDVTQNSWRLVLTRDELDPARPRIIEASQNQLTLHPFKEK
>CP035179.1|QAT12018.1|433106_434153_+|type-VI-secretion-system-baseplate-subunit-TssG
MAQLRPQLPYMNFYRFCQLLEKNHPKAPIIGSGWLLGDEPIRFRPHPGMGFPAGEIRGMDDPEPPRPPAVRVTFMGLYGVESPLPTHYSDDIAQRREGVEATEDFLDIFNHRLIAQYYRIWRKYSYPATFRAGGTDNISQYLLGLAGLGIPGCAAVAAAPLSRFLALLPVMMLPGRSGEGMEALVALLAPGTRATVYHHDPCRIPLSQPLTMSVRQPVSLQHRPVMGTHATDVNGQVLLQLATEKPHEVRGWLPGGELFSDLMALLHVWLGSHLDVRLQLCVARHLLPDAQLCCQQEHAVQLGRTAVLRPLDAQKQADDRVTIYLGRYQRVRENIHRRESDEDGDYRS
>CP035179.1|QAT07470.1|427171_428383_+|hypothetical-protein
MPVNIFDIPSEEKTSQKALSLWVEFGICVCIIAVYVCVFLVYFSEYLSKNNYVFWSELLLVPLLLSGAVFFFRVIIWNNENIETVYWNKTRLDYYQELLQKGRAYLEIIELQIRLPDLNGDVTNIIEGDLLPVRYAPKFTHMSRYLSFNSPTNELNSIHQIQDRNAILFNKIMGFLINDIHMHITLLPKYIRVKVICALNDNFKPLMENIWQERLDNIYPGENIEFSRNLSESIDKLLDSSSDEYIVLIAASFYGAELLDDEIDDKSESVMFLLGRLRNDGETGGRSSLGAFFRPECDWVGIDKLLLWGRVNEGRRLSGVIYSGLNEEELKKLVLKTTDVMSESALSSYMYVDSDNYLCKCPPLTEFLQLSYVNEHLPPGQYLLVNKNNDVLNCHLFNSVASV
>CP035179.1|QAT12017.1|426894_427167_+|PAAR-domain-containing-protein
MNRLEYEKTICVGDKTSHGGSVLTGSSQIIIDGKSVARKSDLVSCPTHGVNSISEGDEKHCDNGLAVALEGHRCSCGAILISAGSRVLKE
>CP035179.1|QAT12016.1|426477_426885_+|hypothetical-protein
MVFYTGCARDDRLASKKLSVFYNILFYSKTFDTILRLDEFPDSALQGESINVFKTSIEKVKDYYIDYSIESAFKFTGPDQVIVVDEKTGKPQEKVQETDDNGNPVMKNGEPVMIDDPDGFQPVILKRLPEVTIAN
>CP035179.1|QAT07477.1|440403_441450_+|MerR-family-transcriptional-regulator
MLIQVGELAKRAGLTVRTLHHYEQTGLLTPSARSEAGYRLYNLSAVQRLHMIKALAQAGLTLATIKDYLDRQTLSLPELLTQQIDTLNAQLRDVGRLRDRLLVLREALASGNEPDLESWLQTLELMKMYDRWFSQQELAALPFAAQDEQRAQAWRELTEEVQTLMASGCPTDSPQAMRLATRWMERLEQDTAGRPEFLTRLNEMHAAEPQMVEQTGVTPAIIAYITEAFAESKLAIWARYLDEEEMAFTRQHYFDRLQEWPALVAKLHQACREGVAPDSASGQALARAWLELFQSYAGTRPQTLQKFRRAMEQEPHLMKGTWMTPAVLSWLQQATGSLMRQAQGPAAG
>CP035179.1|QAT07478.1|441450_443130_-|C4-dicarboxylic-acid-transporter-DauA
MNRLFSSHVMPFRALIDACWKEKYTTARFTRDLIAGITVGIIAIPLAMALAIGSGVPPQYGLYTSAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLVATLMSGIFLILFGLARFGRLIEYIPLSVTLGFTSGIGITIGTMQIKDFLGLQMPHVPEHYLQKVAALAMALPTINVGDAAIGVVTLGILILWPRLGIRLPGHLPALLGGCAVMLVVNLLGGDVATIGSQFHYQLADGTQGNGIPQLLPQLVLPWDMPGSNFTLSWASLQALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHKANSELIGQGLGNIVAPFFGGITATAAIARSAANVRAGATSPVAAVIHALLVILALLILAPLLSWLPLSAMAALLLMVAWNMSEAHKVINLLRHAPKDDIVVMLMCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTHLAPVNVEVPDDVLVLRVIGPLFFAAAEGLFNDLETRIAGKRIVVLKWDAVPVLDAGGLDAFQRFVNKLPEGCELRVSNLEFQPLRTLARAGVKPLPGRLSFYPDRQAALADL
>CP035179.1|QAT07479.1|443254_444202_-|ribose-phosphate-pyrophosphokinase
MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQINENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLNLDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVMVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAIQNIKNSVIDEFVVCDTIPLAPEIKALDKVRTLTLSGMLAEAIRRISNEESISAMFEH
>CP035179.1|QAT07480.1|444385_445237_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MMTRWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTLTIEPRSDGQLRLLTPVAGVPDEENLIVRAARLLMHAASESDRLPAGSGADISIDKRLPMGGGLGGGSSNAATVLVALNHLWGCGLSEDELATLGLQLGADVPVFVRGHAAFAEGVGEILTPVEPEEKWYLVAHPGVSIPTPIIFRDPELPRNTPRRSINTLLNCEFSNDCELIARKRFREVDAALSWLLEYAPSRLTGTGACVFAEFNTESAARQVLDTAPAWLNGFVARGVNLSPLKQALL
>CP035179.1|QAT07481.1|445233_445845_-|lipoprotein-localization-protein-LolB
MNRLFRLLPLASLVLTACSLHTPQGPGKSPDSPQWRQHQQAVRSLNQFQTRGAFAYLSDEQKVYARFFWQQTGQDRYRLLLTNPLGSTELSLTAQPGSVQLIDNKGQTYTATDAEEMIGRLTGMPIPLNSLRQWIIGLPGDATDYSLDDRYRLRELNYTQNGKTWHVTYGGYTSDTQPALPSNVELNNGAQRIKLKMDNWIVK
>CP035179.1|QAT07482.1|446115_447372_+|glutamyl-tRNA-reductase
MTLLALGINHKTAPVALRERVTFSPETLDKALESLLAQPMVQGGVVLSTCNRTELYLSVEEQDNLQEALIRWLCNYHGLNEEDLRKSLYWHQDNDAVSHLMRVASGLDSLVLGEPQILGQVKKAFADSSRGHLNVSELERMFQKSFSVAKRVRTETDIGASAVSVAFAACTLARQIFESLSSVTVLLVGAGETIELVARHLREHHVRKMVIANRTRERAQALAEEVGAEVIALSDIDERLKEADIIISSTASPLPIIGKGMVERALKARRNQPMLLVDIAVPRDVEPEVGKLANAYLYSVDDLQNIIQHNLAQRKAAAVQAESIVEQETSEFMAWLRAQSASETIREYRSQSEQVREELTAKALAALEQGGDAQEIMQDLARKLTNRLIHAPTKSLQQAARDGDDERLHILRNSLGLE
>CP035179.1|QAT07483.1|447414_448497_+|peptide-chain-release-factor-1
MKSSIVAKLEALYERHEEVQALLGDAATIADQDKFRALSREYAQLSDVARCYTDWRQVQEDIETAQMMLDDPEMREMAQEELRDAKEKGDQLEQQLQVLLLPKDPDDERNAFVEVRAGTGGDEAALFAGDLFRMYTRYAESRRWQVEILSANEGEHGGFKEVIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEMPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEVAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEAMEGKLDMLIEPIVQEHQADQLAALSEQE
>CP035179.1|QAT12019.1|448496_449345_+|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MTFQAWLQQAIARLAESDSPRRDAEILLGHVTGRARTWILAFGETTLSADEAARLEALLVRRQRGEPIAHLVGQREFWSLPLFVSPATLIPRPDTECLVEQALARLPTAPCRILDLGTGTGAIALALASERPDCEVTAVDVMPDAVALALRNAEHLGIANVTISQSDWFSALDGQRFATIVSNPPYIDAADPHLAEGDVRFEPLTALVAGDQGLADLAHIIREGRQYLQPGGWMLLEHGWTQGEAVRALFREAGYLDVATCRDYGDNERLTLGRLPDMENVG
>CP035179.1|QAT07484.1|449344_449737_+|SirB-family-protein
MNLFTAVLYLHIATVAVSVGLFVLRYWWMYHQSPLLNQRWVRIAPHCSDTLLFLSGAGLMAITHYLPFTEDGAWLTEKLFGVIIYIALGFIALGRRRPRSQQSRFIAFLLALVVLFIIIQLAITRIPILG
>CP035179.1|QAT07485.1|449740_450553_+|tetratricopeptide-repeat-containing-protein
MGSLADFEFNKAPLCDGMVLISEQVRDDFPSRFVEEELQRLLRLAQEEIAPSWDQERQIERLLELFYDEWGFGASQGVYRLSDALWLDKVLVNRQGSAVSLGAILLWIAQRLALPVVPVIFPTQMLLRADPETSEEMWLINPFNGETLDEHTLEVWLKGNIGPVAELFNEDLDEADNAEVIRKLLDTLKSALMEERQMELALRASEALLQFNPEDPYEIRDRGLIYAQLDCDHVALLDLSYFVEQCPEDPISEMIRAQINTISHKQITLH

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Crispr_ID: CP035179_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035179_2

480339-480440

Orphan

Consensus_repeat	Method
TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035179_2

>merge|CP035179|2|480339-480440|CRISPRCasFinder
TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGACAGCAGAACAGGTGGCTGAGAGAGTGCAGGAATGTGTAGCCTCGCTAAGCGAAGCGCGAGCGAGGAGA

>CP035179|2|2|480339-480440|CRISPRCasFinder
TGTAGCCTCGCTAAGCGAAGCGCGAGCGATGAGA	CAGCAGAACAGGTGGCTGAGAGAGTGCAGGAATG
TGTAGCCTCGCTAAGCGAAGCGCGAGCGAGGAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP035179.1\|QAT07515.1\|487779_490455_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
CP035179.1\|QAT07499.1\|467636_468287_-\|two-component-system-response-regulator-NarL	unknown	unknown	gnl\|CDD\|182619
CP035179.1\|QAT07507.1\|479841_480285_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP035179.1\|QAT07516.1\|490532_490718_+\|hypothetical-protein	unknown	unknown	unknown
CP035179.1\|QAT07510.1\|482818_483721_+\|patatin-like-phospholipase-RssA	unknown	unknown	gnl\|CDD\|182352
CP035179.1\|QAT07517.1\|490931_491579_+\|YchE-family-NAAT-transporter	unknown	unknown	gnl\|CDD\|236850
CP035179.1\|QAT07514.1\|487014_487632_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
CP035179.1\|QAT07500.1\|468297_470076_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	unknown	unknown	gnl\|CDD\|182581
CP035179.1\|QAT07512.1\|485021_485924_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|184021
CP035179.1\|QAT07503.1\|475921_477457_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
CP035179.1\|QAT07513.1\|486045_486453_-\|DNA-binding-transcriptional-regulator-H-NS	unknown	unknown	gnl\|CDD\|182858
CP035179.1\|QAT07505.1\|478163_478841_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
CP035179.1\|QAT07506.1\|478837_479734_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
CP035179.1\|QAT07511.1\|483810_484824_+\|two-component-system-response-regulator-RssB	unknown	unknown	gnl\|CDD\|182652
CP035179.1\|QAT07502.1\|472181_475925_+\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
CP035179.1\|QAT07501.1\|470387_471776_+\|NarK-family-nitrate/nitrite-MFS-transporter	unknown	unknown	gnl\|CDD\|184994
CP035179.1\|QAT07498.1\|466257_467640_+\|YchO/YchP-family-invasin	unknown	unknown	gnl\|CDD\|236661
CP035179.1\|QAT07509.1\|482247_482706_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|234966
CP035179.1\|QAT07508.1\|481362_482205_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
CP035179.1\|QAT07504.1\|477453_478164_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|185014

Protein	Function_ID	Function_description	E-value
CP035179.1\|QAT07515.1\|487779_490455_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
CP035179.1\|QAT07499.1\|467636_468287_-\|two-component-system-response-regulator-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.26442e-140
CP035179.1\|QAT07507.1\|479841_480285_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.05574e-32
CP035179.1\|QAT07510.1\|482818_483721_+\|patatin-like-phospholipase-RssA	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	0
CP035179.1\|QAT07517.1\|490931_491579_+\|YchE-family-NAAT-transporter	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	5.03226e-138
CP035179.1\|QAT07514.1\|487014_487632_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	1.66434e-117
CP035179.1\|QAT07500.1\|468297_470076_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
CP035179.1\|QAT07512.1\|485021_485924_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
CP035179.1\|QAT07503.1\|475921_477457_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
CP035179.1\|QAT07513.1\|486045_486453_-\|DNA-binding-transcriptional-regulator-H-NS	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	2.61324e-79
CP035179.1\|QAT07505.1\|478163_478841_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	2.8765e-130
CP035179.1\|QAT07506.1\|478837_479734_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.2204e-15
CP035179.1\|QAT07511.1\|483810_484824_+\|two-component-system-response-regulator-RssB	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
CP035179.1\|QAT07502.1\|472181_475925_+\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
CP035179.1\|QAT07501.1\|470387_471776_+\|NarK-family-nitrate/nitrite-MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
CP035179.1\|QAT07498.1\|466257_467640_+\|YchO/YchP-family-invasin	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0
CP035179.1\|QAT07509.1\|482247_482706_-\|YchJ-family-protein	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	7.51559e-107
CP035179.1\|QAT07508.1\|481362_482205_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	4.09997e-176
CP035179.1\|QAT07504.1\|477453_478164_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	1.14838e-83

>CP035179.1|QAT07507.1|479841_480285_+|Lrp/AsnC-family-transcriptional-regulator
MNDVLDEIDRAILTCLTQDARVSLKVLSARVGLTSPSTAERVKRLEERGVIQGYGARVNLAALGYSLQALVRVRPLPGLLQKVDKYIQAMPECIESDKVTGEDCFVMRLVVRDIAQLDTLLDGLAEYAQCNTSVVKSSPVKRRLPPL
>CP035179.1|QAT07506.1|478837_479734_-|DMT-family-transporter
MQLTRGVWQMSLAMIISGSIGAFVLLSGLPVTDVVFWRCLIGALTLLVFIVLSRQPFSRLTRFTLALAVIGGAALVVNWLLLFAAYSRISIGMATVVYNTQPFMLVLMGMVLGERVSAVKWGWLLLAFGGVVILLSSELMPAHEEGLTTGVLLALGAAFFYALTAIIARKLHPLPAQHIAFIQVLVGVVMLLPLVHAPELTASFPWRYLLILGIVHTGIMYQLLYSAIQKLPTPVTGSLSFIYPLVAMVVDYLVFHHALSAVQLLGGMLILFAAAGNNLGWGEKKPRRGGVSEQSRAS
>CP035179.1|QAT07505.1|478163_478841_+|respiratory-nitrate-reductase-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYESFLPIDVKQKMAMIAGGACGVMTLVGGLLLLKRRLLSPRVRATTTGADILILSLLMVQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASQHLDGVAFIFRVHLVLGMTLFLLFPFSRLVHIWSAPVEYLTRKYQIVRARR
>CP035179.1|QAT07504.1|477453_478164_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MIELVIVSRLLEYPDAALWQHQQEMFEALASSEKLSKEDAHALGVFLRDLVAQDPLDAQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYERHGLLLDSHELPDHLPLYLEYLAQLPEEEALGGLRDVAPILGLLSARLQQRESRYAVLFELLLKLANTQVDSQKVAEKIADEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRRFAGAVAPQYLNISNGGQQ
>CP035179.1|QAT07503.1|475921_477457_+|nitrate-reductase-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDYDYQNLHNAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFDNMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIESGMPTVCSETCVGRIRYLGVLLYDADAIENAASTENEKDLYQRQLDVFLDPNDPKVIEQALKDGVPQGVIEAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGVVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHREQAREAFPEKNGCGFSFGDGCHGSDSQFNLFNSRRIDAIDVTSKTEPHA
>CP035179.1|QAT07502.1|472181_475925_+|nitrate-reductase-subunit-alpha
MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKVQHSDPVEAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFYDWYCDLPPASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDKPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRTLRASDLVDSLGQENNPEWKTVAFDEKGDMTVPNGSLGFRWGDKGKWNLEQRDGKTGEEIELRLSLLGSHDEVANVGFPYFGGEGSEHFNKVDLENILLHKLPAKRLQLADGSTALVTTVYDLTMANYGLERGLNDDNCAAGYDEVKAYTPAWAEKITGVSRAHIIRTAREFADNADKTHGRSMIIVGAGLNHWFHLDMNYRGLINMLIFCGCVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGVNPLRIADEAKKAGMTPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTENGIQGKDLGKQGGVKPEEVEWRDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWEIYKGIAKKFSEVCMGHLGKETDVVTLPIQHDSAAEMAQPLDVKDWKKGECDLIPGKTAPHIIPVERDYPATYERFTSIGPLLETIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPKLETAIDAAEMILTLAPETNGQVAVKAWQALSEITGREHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLTGRQSLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGEKSNGNPEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSEADAKDLGIEDNDWIEVFNANGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYGHLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>CP035179.1|QAT07501.1|470387_471776_+|NarK-family-nitrate/nitrite-MFS-transporter
MSQSSLPEKANRSVITDWRPEDPEFWQQRGHRVASRNLWISVPCLLLAFCVWMLFSAVAVNLNKVGFQFTTDQLFMLTALPALSGALLRVPYAFMVPLFGGRRWTAFSTGIMIVPCVWLGFAVQDTSTPFSIFVIISLLCGFAGANFASSMANISFFFPKAKQGGALGVNGGLGNMGVSVMQLVAPLVVSISIFAVFGGNGSEQPDGSMLYLENAAWIWVPFLIIFTLAAWFFMNDLSASKASLSEQLPVLKRLHLWIMALLYLATFGSFIGFSAGFAMLSKTQFPDVQILHYAFFGPFIGALARSMGGAISDRLGGTRVTLVNFVVMAVFCALLFLTLPTNGQGGNFIAFFAVFMVLFLTAGLGSASTFQMISVIFRKLTMDRVKAQGGSEAQAMREAATDTAAALGFISAIGAIGGFFIPKAFGISLDLTGSPAGAMKVFLVFYIACVVITWAVYGRKRQ
>CP035179.1|QAT07500.1|468297_470076_-|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX
MLKRLFTPLTLVNQLALIVLLATIIGVAGMAISARLVNGVQGSAHAINKAGSLRMQSYRLLAAIPLNENDQKLVADMTATVFSPELQNSARRDGQEIQLKALQQYWQLALAPGMQRAVNQAEVAQDVADFVDRIDQLVTAFDHTTEQRIERVVWIHRILAIGMALLLIFTIIWLRARLLRPWKQLLSMARAVSQRDFTQRAHISGRNEMATLGMALNNMSEELAESYAVLERRVQEKTAGLEQKNEILAFLWQANRRLHSSAPLCERISPVLNGLQGLTLLRDIEVRVYDLEDEDNHQEFTCHSDDDCDDKGCYLCPRNLPPLPDGGTTLKWRLSDAHSQYGILLATLPVGRHLSHDQQQLVDTLVEQLTSTLALDRHQEKQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALPTESRQLLGQIRNELNTSWAQLRELLTTFRLQLTEPGLRPALEASCQEYSAHFGFTVQLDYQLPPRFVPSHQAIHLLQIAREALSNALKHASATEVTVTVSQRDNQVRLVVADNGRGVPDHAERSNHYGLIIMRDRAQSLRGDCQVRRRETGGTEVIVTFIPEKTFSIQ
>CP035179.1|QAT07499.1|467636_468287_-|two-component-system-response-regulator-NarL
MSQQERATILLIDDHPMLRTGVKQLISMAPDIQVIGEASNGAQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRVVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATSDRDISQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>CP035179.1|QAT07498.1|466257_467640_+|YchO/YchP-family-invasin
MAVSFRLLPTLTFLLLLPGVPVWALTASDTTRPAQAQDPLPDMGIAPQVDDDARHFAEVAKKFGEASMSDNGLTAGEQAQLFAISKIGNEVSHQLESWLSPWGNANVDLLVDKEGKFTGSKGSWFVPLQDNDRYLTWNQYSVTRREHDLVGNIGLGQRWRVGGWLLGYNSFYDKVLSESLARGSVGAEAWGEYLRLSANYYHPLGDWQLRDNQTQEQRMAAGYDVTAQARLPFYQHINTSVSVEQYFGDSVDLFHSGTGYHNPVAVSVGLNYTPVPLVTVTAKHKQGENGVSQNNVGLKLNYRFGVPLKQQLAADEVAISNSLRGSRFDSPERDNLPVVEYRQRKNLTVYLATPPWDLQSGETVQLKLQIHSLHGIKALHWQGDTQALSLTPPVDASSPDGWSIIMPVWNSEPGAANRWRLSVVVEDKQGQRVSSNEIALALTEPLVKFTTPGVSWTDSP
>CP035179.1|QAT07508.1|481362_482205_-|formyltetrahydrofolate-deformylase
MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDATLLADLDSALPEGSIRELNPAGRRRVVILVTKEAHCLGDLLMKANYGGLDVDIAAVIGNHDTLRSLVERFGIPFELVSHEGLSREEHDQRMGDAIAAHEPDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>CP035179.1|QAT07509.1|482247_482706_-|YchJ-family-protein
MSQLCPCGSALEYSSCCQRYLSGAELAPGPSQLMRSRYSAFVMKDADYLIKTWHPSCQAQQFRAELEKGFSQTEWLGLTLFASDEGRAPNEGFVSFVARFNDNNRPGAIIERSRFLKENGQWYYIDGTRPLIGRNDPCPCGSGKKFKKCCGQ
>CP035179.1|QAT07510.1|482818_483721_+|patatin-like-phospholipase-RssA
MRKLKIGLALGAGAARGWSHIGVINALQRAGIEIDIVAGCSIGSLVGAAYACNRLPALESWVCSFSNWDVLKLMDLSWRRGGLLRGEKVFNHYRRIMPVTEIERCERRFAAVATNLSTGRELWFTEGDLHLAIRASCSMPGLMSPVRHNGYWLVDGAVVNPVPVSLTRAMGADIVIAVDLQHDAHLMQQDLFSLETPRQEAEEKEGPWHTRLRARLTRMSSRRTAVTPTAMEIMTTSIQVLENRLKRNRMAGDPPDILLQPYCPQVSTLDFHRAGEAIAAGQLAVEKKMDELLPLVRTAV
>CP035179.1|QAT07511.1|483810_484824_+|two-component-system-response-regulator-RssB
MTQPLAGKQILIVEDEPVFRSLLHGWLTSLGATTFQAEDGKDALHKMTEVHPDLMICDISMPRMNGLELVETLRNRGEQLPILMISATENMADIAKALRLGVQDVLLKPVKDFDRLRETVYACLYPAMFSSRVEEEERLFEDWDALVSNPIAASRLLQELQPPVQQEMSHCRIHYRQLVSADKPGLVLDIAPLSENDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQGQRLPEMGSLLKQVNQLLRQANLPGQFPLLVGYYHSGLKNLILVSAGLNGTLNTGEHQIQISNGVPLGTLGDAYLNQISQRCTSWQCQIWGAGGRLRLMLSAE
>CP035179.1|QAT07512.1|485021_485924_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MAALNSKVRKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSRDNLAEMISRFDETGASQIMVEPVEDVTAYGVVDCKGESLKPGESVPMVGVVEKPKADVAPSNLAVVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHKTLGDDFKAWLETAVAK
>CP035179.1|QAT07513.1|486045_486453_-|DNA-binding-transcriptional-regulator-H-NS
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEENAAAAEIEERTRKLQQYREMLIADGIDPNELLSTMAAVKAGTKTKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLI
>CP035179.1|QAT07514.1|487014_487632_+|thymidine-kinase
MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSRIGLSSPARLYNPQTSLFDDIAAEHQLKPIHCVLVDESQFLTREQVHELSEVVDTLDIPVLCYGLRTDFRGELFTGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQEGRPYNEGEQVVIGGNERYVSVCRKHYKEALSVGSLTKVQNQHRPC
>CP035179.1|QAT07515.1|487779_490455_-|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MAVTNIAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYLLQGKELKAVQDIILKNGALNAAIVGQPAAKIAELAGFTVPATTKILIGEVTNVDESEPFAHEKLSPTLAMYRAKDFEDAVAKAEKLVAMGGIGHTSCLYTDQDNQPARVAYFGQMMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLTIVRKGADLANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMVAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESIKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGREFVEGEAGAKAEVAPVKAEKKAKKSA
>CP035179.1|QAT07516.1|490532_490718_+|hypothetical-protein
MHVNVYVEKSGRCFTDLLKKLYLFRFQVLLPSTLLVSSRLLTSEYKLRDLDQVLSLLIPFS
>CP035179.1|QAT07517.1|490931_491579_+|YchE-family-NAAT-transporter
MTQSLFDFSAYFKFFIGLFALVNPVGIIPVFISMTSYQPAAVRNKTNLTANLSVAIILLTSLFLGDGILQIFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSWVHLVGFSLAIAVFALCCWGIFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKALFPGLLS

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Crispr_ID: CP035179_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035179_4

4840966-4841074

Orphan

Consensus_repeat	Method
TGTCCCACCCTGTACCACTTTTTTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035179_4

>merge|CP035179|4|4840966-4841074|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTAAACCAAATTCTGTAATGTGGGACGCTGAAACCCGCGCCAGCTCTGCGTGTACCACTTGTCCCACCCTGTACCACCTTTTTTTA

>CP035179|4|4|4840966-4841074|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTAA	ACCAAATTCTGTAATGTGGGACGCTGAAACCCGCGCCAGCTCTGCGTGTACCACT
TGTCCCACCCTGTACCACCTTTTTTTA

Protein	Signature genes	Signature genes Name	Protein_function
CP035179.1\|QAT11408.1\|4838056_4839037_-\|PTS-sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226255
CP035179.1\|QAT11413.1\|4841092_4843162_-\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
CP035179.1\|QAT11411.1\|4840038_4840323_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|372675
CP035179.1\|QAT11412.1\|4840417_4840774_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP035179.1\|QAT11414.1\|4843197_4843413_-\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
CP035179.1\|QAT11405.1\|4834919_4835369_-\|phage-virion-morphogenesis-protein	unknown	unknown	gnl\|CDD\|368274
CP035179.1\|QAT11404.1\|4834352_4834898_-\|hypothetical-protein	unknown	unknown	unknown
CP035179.1\|QAT11415.1\|4847881_4848529_-\|hypothetical-protein	unknown	unknown	unknown
CP035179.1\|QAT11406.1\|4836385_4836592_-\|hypothetical-protein	unknown	unknown	unknown
CP035179.1\|QAT11416.1\|4850074_4851121_-\|hypothetical-protein	unknown	unknown	unknown
CP035179.1\|QAT11421.1\|4853695_4853896_+\|DUF2724-domain-containing-protein	unknown	unknown	gnl\|CDD\|371288
CP035179.1\|QAT11420.1\|4853178_4853688_+\|phage-regulatory-CII-family-protein	unknown	unknown	gnl\|CDD\|369127
CP035179.1\|QAT11410.1\|4839404_4839926_-\|PTS-sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226253
CP035179.1\|QAT11417.1\|4851110_4852151_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|222904
CP035179.1\|QAT11418.1\|4852154_4852787_-\|phage-repressor-protein	unknown	unknown	gnl\|CDD\|374550
CP035179.1\|QAT11422.1\|4853859_4854201_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375102
CP035179.1\|QAT11409.1\|4839033_4839408_-\|PTS-sorbitol-transporter	unknown	unknown	gnl\|CDD\|226254
CP035179.1\|QAT12217.1\|4835742_4835988_-\|holin	unknown	unknown	unknown
CP035179.1\|QAT11407.1\|4837032_4838046_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
CP035179.1\|QAT11419.1\|4852903_4853146_+\|Rha-family-transcriptional-regulator	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP035179.1\|QAT11408.1\|4838056_4839037_-\|PTS-sorbitol-transporter-subunit-IIB	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	1.71362e-173
CP035179.1\|QAT11413.1\|4841092_4843162_-\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
CP035179.1\|QAT11411.1\|4840038_4840323_-\|transcriptional-regulator	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	1.06433e-37
CP035179.1\|QAT11412.1\|4840417_4840774_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.98259e-09
CP035179.1\|QAT11405.1\|4834919_4835369_-\|phage-virion-morphogenesis-protein	gnl\|CDD\|368274	pfam05069, Phage_tail_S, Phage virion morphogenesis family. Protein S of phage P2 is thought to be involved in tail completion and stable head joining.	6.12186e-39
CP035179.1\|QAT11410.1\|4839404_4839926_-\|PTS-sorbitol-transporter-subunit-IIC	gnl\|CDD\|226253	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism].	6.94718e-79
CP035179.1\|QAT11420.1\|4853178_4853688_+\|phage-regulatory-CII-family-protein	gnl\|CDD\|369127	pfam06892, Phage_CP76, Phage regulatory protein CII (CP76). This family consists of several phage regulatory protein CII (CP76) sequences which are thought to be DNA binding proteins which are involved in the establishment of lysogeny.	4.13487e-84
CP035179.1\|QAT11409.1\|4839033_4839408_-\|PTS-sorbitol-transporter	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	3.73192e-58
CP035179.1\|QAT11421.1\|4853695_4853896_+\|DUF2724-domain-containing-protein	gnl\|CDD\|371288	pfam10893, DUF2724, Protein of unknown function (DUF2724). This is a family of proteins with unknown function.	4.10866e-23
CP035179.1\|QAT11417.1\|4851110_4852151_-\|site-specific-integrase	gnl\|CDD\|222904	PHA02601, int, integrase; Provisional.	0
CP035179.1\|QAT11418.1\|4852154_4852787_-\|phage-repressor-protein	gnl\|CDD\|374550	pfam16452, Phage_CI_C, Bacteriophage CI repressor C-terminal domain. The C-terminal domain of the CI repressor functions in oligomer formation.	2.36213e-41
CP035179.1\|QAT11422.1\|4853859_4854201_+\|hypothetical-protein	gnl\|CDD\|375102	pfam17282, DUF5347, Family of unknown function (DUF5347). This family of unknown function is found in Bacteria, mainly in Proteobacteria.	3.6293e-45
CP035179.1\|QAT11414.1\|4843197_4843413_-\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	5.83127e-21
CP035179.1\|QAT11407.1\|4837032_4838046_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	3.08412e-65

>CP035179.1|QAT11412.1|4840417_4840774_+|XRE-family-transcriptional-regulator
MPEDGCCPERDNSCIFRCRVAIVIGKRLKISRVRADLTQAELGVLAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGRTLLFSPNP
>CP035179.1|QAT11411.1|4840038_4840323_-|transcriptional-regulator
MKKSTTKDWHPADIIAALHKRGTSLAKLSREAGLASSTLSNTLTRAWPKGEWLIAIALDVHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>CP035179.1|QAT11410.1|4839404_4839926_-|PTS-sorbitol-transporter-subunit-IIC
MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMKLVGTIRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALGTTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITEYLFLRLSKRGNVP
>CP035179.1|QAT11409.1|4839033_4839408_-|PTS-sorbitol-transporter
MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEPSFREESLMILPGDRLMLAGHDYLVTAVGKGAQQALFELGHLTLVFNGDLNPCHTGTVHLSGPVPNLRDLHGNLVIEEGRP
>CP035179.1|QAT11408.1|4838056_4839037_-|PTS-sorbitol-transporter-subunit-IIB
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEIVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAHFITEENYVSDVTMEQLVLVDTAEAPDSEPEITPEPALRVITTPPPPRGAEKLVRMVEQTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHAMTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>CP035179.1|QAT11407.1|4837032_4838046_-|Gfo/Idh/MocA-family-oxidoreductase
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDLAMAYGVIGYTRLDVLLQEEAIDVVSVATPDPYHTESILTALRHGKHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDLAVMRIKAELEKPEAGRILRGHISMDDVISVPTEWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMADGSSWVVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHLGLEITTPGMTLTPNSYFINYRNGIASGFGIDPINDFVRAVRNRSPYPVTAVDGLAVSRICEAVHRSLKSGKPEKI
>CP035179.1|QAT11406.1|4836385_4836592_-|hypothetical-protein
MESEHEAINIALTIENGVVTNVRQIRKDEHIASLETFLWIVKRAGYEVVPPQESTQDPENIKVLAEVE
>CP035179.1|QAT12217.1|4835742_4835988_-|holin
MLCAGCTSAPPVPTPVIVYNACPRVSLCPMPGSDPTTNGDLSADIRQLVSALEGCALQVRTVKNCQDKIDVQAKESAKSLN
>CP035179.1|QAT11405.1|4834919_4835369_-|phage-virion-morphogenesis-protein
MNDFKPFDDKLAGLIAALSPTARRKMAADIAKPLRARQQRRIKTQKAPDGTPYAARKRQPVKAKKDRVKREMFAKLRISRFMKATAGNDVAVVEFTGKVQRMVNVHQYGLKDKPSPNSGSVEYPARILLGFSPSDIDFASTKIVNYLSE
>CP035179.1|QAT11404.1|4834352_4834898_-|hypothetical-protein
MRKLSKGNEGAIDKKIELMIKVIIRTDSYLNSANTKSTILLSLSSALLVALSVNFKNITGMVIVDSDKAVLAVLISLMIFLLITSIVFSLRGITPYIKPSTVSNTFSFVDISINFHELHLYKERFNSVSKLEYLNELISLNHNLSKALVAKYNKQITAITCIEATAYVLCFSVYMIIIANC
>CP035179.1|QAT11413.1|4841092_4843162_-|DUF927-domain-containing-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRIWRKDPEREDDVPPVVLGPDELADLDNLTIIRPDTLYVRVLRTGDIREEELLKIAVKLAHAGVQMARLMSPDGELLEDWSGQLARLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDDSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTYISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPGGDNIILQGSHYLTGGFAQAGTLAEWQGQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERLYAGMDVRMVQIPSDTGNHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLARELLRRYQTALMPENAGNQVQRIVARFALLAVAGEMATLQGITGWQEGTAYGAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMVGFRRVEKDPLTGEEYTLFHILPEGWREMCRGFSPARAARLCLEAECLLPGSDGKYQSQVRLPEIGKARVYRLTSRILSI
>CP035179.1|QAT11414.1|4843197_4843413_-|AlpA-family-transcriptional-regulator
MKTRADNNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRAAIR
>CP035179.1|QAT11415.1|4847881_4848529_-|hypothetical-protein
MTSPIRQNLFERECDMPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPPEIKARSLKAVMKLSRNSRGRKWLKTLGDDALPDLTTSAQPSQRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPASDRILRKLRALAQERELPSDGLGRGTFYEVLKMGRERKYR
>CP035179.1|QAT11416.1|4850074_4851121_-|hypothetical-protein
MLVNNYIQQYPWISYLLIIIYFIYICLELYLCVSKKGFNMDERPLTSQYLFKQSLRIPVFSAIYFGIFSWLGHSPQFDSEGFNNFIAISKLPIALLSLSIPFVAVVANIHRTVQTNRQIEETKQKNLSDSYYSHLKFVTDYFTNLPNKTIKRERHYGTKEISYKINYPIHLYRYIFINSSPEKGRPKNTDKEYIREVNNHWVDILKNLEKIHSSNRGSQFDEVLIRQMQSLHSIEKHLSELNRMLCLTPMELNEHATLYFDGYEMITNFMSSIELGDTIETYFKFTIDILDITDNFLSFKDDGSSGQIIILARLLKNNNPAIFDEIVTNKGKAQPSLTYNGDRLATEH
>CP035179.1|QAT11417.1|4851110_4852151_-|site-specific-integrase
MTIRKQPNGKWLCECYPNGRNGKRVRKQFATKGEAIAFESFTMEEVNKKPWLGEKEDRRHLSELIELWYSLYGQTLADPKRLMAKLRIICNGLGDPIASELTAGEFTKYREARLKGEVRNEDGTLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPLAGLPTFKIAEGELAFLTPEEIKRLLDACADSQSPSLLMIAKICLATGARWSEAENLQSHQVSKYRITYTKTKGKKNRTVPISKDLYEELPKNRGKLFTPCRKAFERAVKRAGIELPEGQCTHVLRHTFASHFMMNGGNILVLRDILGHVDIKMTMIYAHFAPDHLEDAVTKNPLANLGWRKLESAC
>CP035179.1|QAT11418.1|4852154_4852787_-|phage-repressor-protein
MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMANRYLRDSFPAEWVIQCALETGASLLWLATGQGDMYACENEETNLKSEPPVTVRTLSKIVAPSIKRVELKNGELQPSDEILLDSSLLDGDSSNALFVKTANDSFVVDTSVKQVSNGFWLVDMDGVKSIVKIARIPGNKIVVNQDDTSFECSVDDVEVVGRAVKVIKNL
>CP035179.1|QAT11419.1|4852903_4853146_+|Rha-family-transcriptional-regulator
MSTDISIRVPKEMATPAEFAEWEGISRGSVYQKIHHGQLAKYMVKKEKNKGRVSLRYLMYKTDQVRESLGHSNFRVIVGK
>CP035179.1|QAT11420.1|4853178_4853688_+|phage-regulatory-CII-family-protein
MFDYKISKHPHFDEACRAFALRHNMAKLAERAGMNVQTLRNKLNPDQPHQLNAPEIWLLTDLTEDSTLIDGFLAQIHCLPCVPINEVAKEKLPHYVMSATAEIGRVAAGAVSGDVKTSAGRRDAISSINSVTRLMALAAVSLQARLQANPAMASAVDTMTGLGASFGLL
>CP035179.1|QAT11421.1|4853695_4853896_+|DUF2724-domain-containing-protein
MLTKEPSFASLLVKQSPAMHYGHGWIMGKDGKRWHPCRSQDELLAELSTKKRGNKWLLKALRRLFH
>CP035179.1|QAT11422.1|4853859_4854201_+|hypothetical-protein
MAIEGAAATVPLSPGERLNGLNHIAELRAKIFGLNIESELERFIKDMRDPRDINNEKNKRALAAIFFMAKIPAERHSISINELTTDEKRELIKAMNHFRAVVSLFPRRLTMPN

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP035179_3	3.1\|2337712\|27\|CP035179\|CRISPRCasFinder	2337712-2337738	27	MN013086	Klebsiella phage vB_Kpn_Chronis, complete genome	33543-33569	1	0.963
CP035179_3	3.1\|2337712\|27\|CP035179\|CRISPRCasFinder	2337712-2337738	27	NZ_LR134256	Klebsiella aerogenes strain NCTC9644 plasmid 3, complete sequence	1565-1591	1	0.963
CP035179_3	3.1\|2337712\|27\|CP035179\|CRISPRCasFinder	2337712-2337738	27	NC_017077	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC7, complete sequence	20760-20786	5	0.815

1. spacer 3.1|2337712|27|CP035179|CRISPRCasFinder matches to MN013086 (Klebsiella phage vB_Kpn_Chronis, complete genome) position: , mismatch: 1, identity: 0.963

ctccacctccgcaggcattggtacgac	CRISPR spacer
atccacctccgcaggcattggtacgac	Protospacer
 **************************

2. spacer 3.1|2337712|27|CP035179|CRISPRCasFinder matches to NZ_LR134256 (Klebsiella aerogenes strain NCTC9644 plasmid 3, complete sequence) position: , mismatch: 1, identity: 0.963

ctccacctccgcaggcattggtacgac	CRISPR spacer
ctccacctccgcaggcattggtactac	Protospacer
************************ **

3. spacer 3.1|2337712|27|CP035179|CRISPRCasFinder matches to NC_017077 (Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC7, complete sequence) position: , mismatch: 5, identity: 0.815

ctccacctccgcaggcattggtacgac	CRISPR spacer
tggcacctccgcaggcattggtgcggc	Protospacer
.  *******************.**.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

172801 : 300944

138

Enterobacteria_phage(24.1%)

integrase,protease,holin,head,terminase,tail,portal,capsid,plate,tRNA

attL 219862:219880|attR 257602:257620

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT07232.1\|172801_174076_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.4e-68	38.6
QAT11997.1\|174432_175230_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
QAT07233.1\|176518_176746_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	3.8e-30	78.4
QAT07234.1\|176778_177057_-	hypothetical protein	K7PKM4	Enterobacterial_phage	6.7e-13	44.9
QAT07235.1\|177953_179030_-	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	2.1e-147	74.1
QAT07236.1\|179157_179943_-	hypothetical protein	A4JX52	Burkholderia_virus	1.4e-60	50.2
QAT07237.1\|179942_180242_-	hypothetical protein	K7PJS4	Enterobacterial_phage	3.8e-14	46.7
QAT07238.1\|180329_181247_-	hypothetical protein	A0A1W6JP69	Morganella_phage	3.1e-46	36.9
QAT11998.1\|181692_182340_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	9.3e-74	63.0
QAT07239.1\|182444_182642_+	hypothetical protein	H9C161	Pectobacterium_phage	2.7e-16	66.1
QAT07240.1\|182667_183129_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
QAT07241.1\|183366_183546_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.6e-15	73.1
QAT07242.1\|183535_184504_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.0e-84	66.4
QAT07243.1\|184709_185534_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	2.6e-113	69.5
QAT07244.1\|185543_185921_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	3.3e-47	72.8
QAT07245.1\|185933_186914_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	8.4e-135	67.2
QAT07246.1\|186927_187506_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.7e-50	56.7
QAT07247.1\|187657_187897_+	hypothetical protein	NA	NA	NA	NA
QAT11999.1\|188066_188366_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	1.5e-39	84.8
QAT07248.1\|188362_188902_+	hypothetical protein	A0A286N2Q6	Klebsiella_phage	2.0e-101	98.9
QAT07249.1\|188898_189243_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	3.9e-39	82.1
QAT12000.1\|189464_189659_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	4.6e-21	87.3
QAT07250.1\|189645_189888_+	hypothetical protein	NA	NA	NA	NA
QAT07251.1\|190016_190262_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.6e-34	98.8
QAT07252.1\|190772_191123_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	4.6e-51	80.7
QAT07253.1\|191254_191749_+\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	1.2e-81	92.0
QAT07254.1\|191745_193476_+\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	9.2e-302	83.4
QAT07255.1\|193485_193671_+	hypothetical protein	A0A1B5FP99	Escherichia_phage	5.2e-14	63.9
QAT07256.1\|193670_194900_+\|portal	phage portal protein	U5P411	Shigella_phage	1.7e-201	81.5
QAT12001.1\|194886_195540_+\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	2.1e-105	87.4
QAT07257.1\|195554_196763_+\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	9.9e-194	84.5
QAT12002.1\|196767_197004_+	hypothetical protein	M1FN89	Enterobacteria_phage	6.7e-06	39.7
QAT07258.1\|197000_197321_+\|head,tail	phage gp6-like head-tail connector protein	Q8SBH7	Shigella_phage	4.8e-15	43.1
QAT07259.1\|197329_197668_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.4e-41	74.1
QAT07260.1\|197664_198114_+	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	6.7e-63	82.6
QAT07261.1\|198110_198458_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	2.8e-32	63.7
QAT07262.1\|199247_199652_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	3.2e-32	56.9
QAT07263.1\|199654_199960_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	1.4e-27	63.6
QAT07264.1\|200033_200267_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
QAT07265.1\|203732_204206_+	hypothetical protein	A0A286S298	Klebsiella_phage	4.6e-54	60.8
QAT07266.1\|204192_204678_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	3.0e-53	66.2
QAT07267.1\|204687_205068_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.1e-57	80.2
QAT07268.1\|210470_210761_+	hypothetical protein	NA	NA	NA	NA
QAT07269.1\|210971_212708_-	hypothetical protein	A0A2H5BNQ4	Klebsiella_phage	7.1e-262	76.7
QAT07270.1\|213459_213882_+	hypothetical protein	K7P834	Enterobacteria_phage	1.8e-25	44.5
QAT07271.1\|214295_214535_+	DNA polymerase V	I6PD82	Cronobacter_phage	7.5e-21	54.4
QAT07272.1\|214537_214864_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.6e-26	53.9
QAT07273.1\|215467_216613_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.1e-117	58.7
QAT07274.1\|217004_217271_-	hypothetical protein	NA	NA	NA	NA
QAT07275.1\|217151_217433_+	hypothetical protein	NA	NA	NA	NA
QAT07276.1\|217475_218183_+	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	27.7
QAT07277.1\|218226_219660_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	4.0e-101	53.0
QAT12003.1\|219640_220135_+	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	9.7e-31	50.7
219862:219880	attL	NA	NA	NA	NA
QAT07278.1\|220109_221021_-	drug/metabolite exporter YedA	NA	NA	NA	NA
QAT07279.1\|221204_222116_+	DUF808 domain-containing protein	NA	NA	NA	NA
QAT07280.1\|222231_223911_+	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	3.1e-20	41.1
QAT07281.1\|224210_224435_-	DUF2525 domain-containing protein	NA	NA	NA	NA
QAT07282.1\|224560_224758_+	protein DsrB	NA	NA	NA	NA
QAT07283.1\|224790_225414_-	transcriptional regulator RcsA	NA	NA	NA	NA
QAT12004.1\|225789_226221_+	lipoprotein	NA	NA	NA	NA
QAT07284.1\|226262_227750_-	alpha-amylase	NA	NA	NA	NA
QAT07285.1\|227950_228751_+	cystine ABC transporter substrate-binding protein	NA	NA	NA	NA
QAT07286.1\|228846_229833_+	D-cysteine desulfhydrase	NA	NA	NA	NA
QAT07287.1\|229848_230517_+	cystine ABC transporter permease	NA	NA	NA	NA
QAT07288.1\|230513_231266_+	L-cystine ABC transporter ATP-binding protein YecC	G3M9Y6	Bacillus_virus	2.2e-26	34.4
QAT07289.1\|231583_232306_+	transcriptional regulator SdiA	NA	NA	NA	NA
QAT07290.1\|232373_232598_-	DUF2594 family protein	NA	NA	NA	NA
QAT07291.1\|233059_233716_+	two-component system response regulator UvrY	NA	NA	NA	NA
QAT07292.1\|233712_235545_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
QAT07293.1\|235602_236151_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
QAT07294.1\|236721_237729_-\|integrase	site-specific integrase	Q1I119	Pasteurella_virus	1.3e-103	56.5
QAT07295.1\|237725_238592_-	BRCT domain-containing protein	NA	NA	NA	NA
QAT07296.1\|238608_239238_-	hypothetical protein	NA	NA	NA	NA
QAT07297.1\|239247_239676_-	XRE family transcriptional regulator	A0A2H4JFL3	uncultured_Caudovirales_phage	1.0e-07	38.5
QAT07298.1\|239948_240152_+	DNA-binding protein	P79674	Haemophilus_phage	6.4e-05	37.1
QAT12005.1\|240374_240572_+	DUF4761 domain-containing protein	NA	NA	NA	NA
QAT07299.1\|240588_240987_+	hypothetical protein	NA	NA	NA	NA
QAT07300.1\|240996_241269_+	hypothetical protein	NA	NA	NA	NA
QAT07301.1\|241337_241562_+	hypothetical protein	NA	NA	NA	NA
QAT07302.1\|241558_242137_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	3.2e-33	41.1
QAT07303.1\|242145_242373_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	5.5e-05	49.0
QAT07304.1\|242369_242564_+	hypothetical protein	NA	NA	NA	NA
QAT07305.1\|242556_243510_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4QWR0	Salmonella_phage	3.6e-82	56.3
QAT07306.1\|243824_244808_+	DNA cytosine methyltransferase	Q6J1P4	Burkholderia_virus	2.5e-70	66.5
QAT07307.1\|244832_247427_+	replication endonuclease	A0A0M4RTM8	Salmonella_phage	1.2e-196	52.4
QAT07308.1\|247623_248625_+\|protease	serine protease	NA	NA	NA	NA
QAT07309.1\|249357_250389_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	3.4e-142	70.8
QAT07310.1\|250402_252124_-	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	6.2e-226	66.2
QAT07311.1\|252284_253118_+\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	1.1e-95	65.6
QAT07312.1\|253142_254192_+\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	5.7e-105	55.0
QAT07313.1\|254239_255244_+\|terminase	terminase	B9A7B6	Serratia_phage	3.9e-87	77.0
QAT07314.1\|255240_255738_+\|head	head completion/stabilization protein	B9A7B7	Serratia_phage	1.2e-60	71.5
QAT07315.1\|255737_255938_+\|tail	phage tail protein	A0A0A7NV57	Enterobacteria_phage	2.3e-15	66.2
QAT07316.1\|256205_256757_+	lysozyme	Q1I0Z1	Pasteurella_virus	9.2e-30	41.3
QAT07317.1\|256753_257149_+	DUF2570 domain-containing protein	NA	NA	NA	NA
QAT07318.1\|257293_257752_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	6.2e-32	48.1
257602:257620	attR	NA	NA	NA	NA
QAT07319.1\|257748_258390_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.5e-44	48.3
QAT07320.1\|258389_258968_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	5.1e-63	62.6
QAT07321.1\|259318_260218_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	6.2e-92	60.9
QAT07322.1\|260210_260807_+\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	1.5e-41	46.3
QAT07323.1\|260811_262971_+	hypothetical protein	H6X4Y8	Enterobacteria_phage	1.6e-16	37.0
QAT07324.1\|263023_263314_+	hypothetical protein	NA	NA	NA	NA
QAT07325.1\|263413_264571_+\|tail	phage tail protein	S4TP62	Salmonella_phage	2.5e-45	49.8
QAT07326.1\|264698_265187_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.6e-49	65.0
QAT07327.1\|265198_268138_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	2.6e-208	44.2
QAT12006.1\|268118_268295_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.5e-10	69.8
QAT07328.1\|268272_268590_-\|tail	phage tail assembly protein	B9A7B2	Serratia_phage	4.2e-27	73.6
QAT07329.1\|268644_269160_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.6e-63	70.0
QAT07330.1\|269159_270341_-\|tail	phage tail protein	A0A0A7NV69	Enterobacteria_phage	1.2e-156	69.3
QAT07331.1\|271692_271941_+	hypothetical protein	NA	NA	NA	NA
QAT07332.1\|272326_273208_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
QAT07333.1\|273306_273975_+	YecA family protein	NA	NA	NA	NA
QAT07334.1\|273999_275211_-	tyrosine transporter TyrP	NA	NA	NA	NA
QAT07335.1\|275402_275642_+	DUF2492 family protein	NA	NA	NA	NA
QAT07336.1\|275677_276175_-	non-heme ferritin	NA	NA	NA	NA
QAT07337.1\|276584_277223_+	hypothetical protein	NA	NA	NA	NA
QAT07338.1\|278844_279096_+	DUF2766 domain-containing protein	NA	NA	NA	NA
QAT07339.1\|279133_280696_-	MFS transporter	NA	NA	NA	NA
QAT07340.1\|280710_280869_+	succinate dehydrogenase	NA	NA	NA	NA
QAT07341.1\|280939_281449_-	non-heme ferritin-like protein	NA	NA	NA	NA
QAT07342.1\|281542_281746_+	hypothetical protein	NA	NA	NA	NA
QAT07343.1\|282340_283321_+	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA
QAT07344.1\|283383_284898_+	L-arabinose ABC transporter ATP-binding protein AraG	A0A2R8FG22	Brazilian_cedratvirus	4.1e-11	30.0
QAT12007.1\|284912_285893_+	L-arabinose ABC transporter permease AraH	NA	NA	NA	NA
QAT07345.1\|286054_286843_+	trehalose-phosphatase	NA	NA	NA	NA
QAT07346.1\|286817_288242_+	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
QAT07347.1\|288265_288694_-	universal stress protein UspC	NA	NA	NA	NA
QAT07348.1\|289046_290630_+	MFS transporter	NA	NA	NA	NA
QAT07349.1\|290634_291774_+	glycoside hydrolase family 105 protein	NA	NA	NA	NA
QAT07350.1\|291835_293569_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	1.4e-87	33.8
QAT07351.1\|293804_294374_+	VOC family protein	NA	NA	NA	NA
QAT07352.1\|294450_295194_+	copper homeostasis protein CutC	NA	NA	NA	NA
QAT07353.1\|295275_296280_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
QAT07354.1\|296276_297020_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.1e-25	30.0
QAT07355.1\|297059_297455_-	hypothetical protein	NA	NA	NA	NA
QAT07356.1\|297507_298326_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	1.1e-60	82.7
QAT07357.1\|298322_298889_-	hydrolase	NA	NA	NA	NA
QAT07358.1\|299156_300944_+\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.3e-11	27.2

DBSCAN-SWA_2

1106904 : 1113333

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT08083.1\|1106904_1107993_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
QAT08084.1\|1108079_1108340_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
QAT08085.1\|1108637_1109498_+	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
QAT08086.1\|1109518_1110280_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
QAT08087.1\|1110540_1111443_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
QAT08088.1\|1111454_1112720_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	7.8e-234	99.8
QAT08089.1\|1112712_1113333_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_3

1819780 : 1829243

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT08701.1\|1819780_1821502_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
QAT08702.1\|1821546_1822248_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
QAT08703.1\|1822601_1822820_+	translation initiation factor IF-1	NA	NA	NA	NA
QAT08704.1\|1822939_1825219_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
QAT08705.1\|1825249_1825567_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
QAT08706.1\|1825892_1826114_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
QAT08707.1\|1826190_1828131_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
QAT08708.1\|1828127_1829243_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_4

2305460 : 2349925

Cronobacter_phage(24.0%)

integrase,head,terminase,lysis,tRNA,coat

attL 2302413:2302458|attR 2346998:2347043

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2302413:2302458	attL	NA	NA	NA	NA
QAT09113.1\|2305460_2307938_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	1.1e-196	45.3
QAT09114.1\|2307924_2308320_-	hypothetical protein	F1C5F2	Cronobacter_phage	2.1e-36	54.8
QAT09115.1\|2308316_2308787_-	hypothetical protein	R9TPR6	Aeromonas_phage	3.6e-27	39.7
QAT09116.1\|2308786_2309206_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	1.8e-30	47.8
QAT09117.1\|2309305_2311783_-	hypothetical protein	A0A173GC04	Salmonella_phage	9.0e-210	56.7
QAT09118.1\|2312453_2312666_-	hypothetical protein	H6WRV2	Salmonella_phage	8.4e-08	49.3
QAT09119.1\|2312923_2313643_-	antirepressor protein Ant	Q0H8C7	Salmonella_phage	6.7e-89	68.8
QAT09120.1\|2313710_2313857_-	DNA-binding protein	A0A0M4S6R9	Salmonella_phage	6.8e-09	60.4
QAT09121.1\|2313958_2314192_+	Arc family DNA-binding protein	A0A0M5M1J2	Salmonella_phage	5.1e-22	71.4
QAT09122.1\|2314194_2314668_+	hypothetical protein	A0A077K9U2	Edwardsiella_phage	2.2e-16	36.8
QAT12108.1\|2314692_2314890_-	hypothetical protein	NA	NA	NA	NA
QAT09123.1\|2314895_2315573_-	hypothetical protein	A0A1W6JNX2	Morganella_phage	2.0e-47	48.0
QAT09124.1\|2315630_2316374_-	DNA breaking-rejoining protein	F1C5E5	Cronobacter_phage	5.9e-72	84.9
QAT09125.1\|2316436_2316820_-	hypothetical protein	F1C5E4	Cronobacter_phage	9.8e-39	61.4
QAT12109.1\|2316816_2317242_-	HK97 gp10 family phage protein	R9TPP7	Aeromonas_phage	4.7e-26	44.0
QAT09126.1\|2317244_2317592_-	hypothetical protein	G0ZNE2	Cronobacter_phage	1.9e-33	62.6
QAT09127.1\|2317591_2318260_-	hypothetical protein	A0A292GBW5	Xanthomonas_phage	3.3e-05	42.3
QAT09128.1\|2318364_2318535_-	50S ribosomal protein L13	Q5G8X7	Enterobacteria_phage	3.4e-12	50.0
QAT09129.1\|2318534_2318915_-	hypothetical protein	F1C5E2	Cronobacter_phage	3.1e-29	55.3
QAT09130.1\|2318917_2319247_-	hypothetical protein	NA	NA	NA	NA
QAT09131.1\|2319256_2320354_-\|coat	phage coat protein	F1C5E1	Cronobacter_phage	4.2e-151	73.6
QAT09132.1\|2320365_2320797_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.4e-41	60.1
QAT09133.1\|2320800_2322186_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	7.6e-166	64.0
QAT09134.1\|2322256_2322481_-	hypothetical protein	NA	NA	NA	NA
QAT09135.1\|2322533_2323532_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	7.5e-115	68.6
QAT09136.1\|2323458_2324928_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.6e-151	56.8
QAT09137.1\|2324940_2326413_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	3.4e-249	82.7
QAT09138.1\|2326412_2327015_-	hypothetical protein	G8C7P2	Escherichia_phage	9.3e-76	80.3
QAT09139.1\|2327379_2327556_-	rz1 lytic protein	U5P461	Shigella_phage	5.3e-08	57.1
QAT09140.1\|2327625_2327853_-	hypothetical protein	NA	NA	NA	NA
QAT09141.1\|2327951_2328419_-\|lysis	lysis protein	Q9AZ06	Salmonella_phage	2.7e-54	72.3
QAT09142.1\|2328415_2328946_-	lysozyme	G9L6J6	Escherichia_phage	4.2e-80	79.7
QAT09143.1\|2328948_2329197_-\|lysis	lysis protein	NA	NA	NA	NA
QAT09144.1\|2329214_2329427_+	hypothetical protein	NA	NA	NA	NA
QAT09145.1\|2329993_2330683_-	antiterminator	I6PDF8	Cronobacter_phage	3.4e-58	53.2
QAT09146.1\|2330679_2330820_-	YlcG family protein	NA	NA	NA	NA
QAT09147.1\|2330816_2331452_-	NinG family protein	M9NYX8	Enterobacteria_phage	1.6e-81	77.9
QAT09148.1\|2331444_2331615_-	NinE family protein	G8C7V4	Escherichia_phage	2.8e-14	71.4
QAT09149.1\|2331620_2332217_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.2e-56	54.3
QAT09150.1\|2332515_2333376_-	hypothetical protein	NA	NA	NA	NA
QAT09151.1\|2334244_2334460_-	molecular chaperone DnaJ	R9TNC2	Aeromonas_phage	1.6e-38	98.6
QAT09152.1\|2334911_2335118_-	hypothetical protein	R9TRD3	Aeromonas_phage	9.0e-31	95.6
QAT09153.1\|2335114_2335561_-	hypothetical protein	R9TME7	Aeromonas_phage	2.2e-10	35.8
QAT09154.1\|2335557_2335851_-	protein ren	O48423	Enterobacteria_phage	2.5e-26	65.6
QAT09155.1\|2335850_2337281_-	helicase DnaB	Q9MCT4	Escherichia_phage	9.9e-185	66.7
QAT09156.1\|2337270_2338170_-	DNA replication protein	A0A0N7C1Z7	Escherichia_phage	2.2e-81	54.8
QAT09157.1\|2338343_2338628_-	hypothetical protein	K7PHN8	Enterobacterial_phage	1.3e-19	56.2
QAT09158.1\|2338648_2338861_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
QAT09159.1\|2338969_2339566_+	XRE family transcriptional regulator	K7P850	Enterobacteria_phage	6.9e-07	27.1
QAT09160.1\|2340105_2340300_+	hypothetical protein	NA	NA	NA	NA
QAT09161.1\|2340387_2340672_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
QAT09162.1\|2340681_2341596_+	DNA recombinase	G8C7T0	Escherichia_phage	1.0e-158	91.4
QAT09163.1\|2341592_2342075_+	siphovirus Gp157 family protein	G8C7S9	Escherichia_phage	8.2e-75	93.1
QAT09164.1\|2342109_2342415_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
QAT09165.1\|2343063_2344200_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	7.4e-159	73.1
QAT09166.1\|2344196_2344421_+	hypothetical protein	NA	NA	NA	NA
QAT09167.1\|2344417_2344690_+	hypothetical protein	Q716F1	Shigella_phage	3.7e-24	63.5
QAT09168.1\|2344686_2345391_+	hypothetical protein	A0A1W6JP46	Morganella_phage	1.0e-25	34.3
QAT09169.1\|2345387_2345606_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	4.4e-12	52.2
QAT09170.1\|2345607_2345943_+	DNA-binding protein	NA	NA	NA	NA
QAT12110.1\|2345939_2346983_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	2.2e-178	85.9
QAT09171.1\|2347413_2348280_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
2346998:2347043	attR	NA	NA	NA	NA
QAT09172.1\|2348281_2348494_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
QAT09173.1\|2348539_2349925_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

DBSCAN-SWA_5

4835742 : 4896625

Salmonella_phage(81.4%)

integrase,holin,head,terminase,tail,lysis,portal,capsid,plate,tRNA

attL 4849943:4849989|attR 4885251:4885297

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT12217.1\|4835742_4835988_-\|holin	holin	S4TNY4	Salmonella_phage	2.7e-26	71.8
QAT11406.1\|4836385_4836592_-	hypothetical protein	A0A1B5FPB7	Escherichia_phage	7.4e-09	55.3
QAT11407.1\|4837032_4838046_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
QAT11408.1\|4838056_4839037_-	PTS sorbitol transporter subunit IIB	NA	NA	NA	NA
QAT11409.1\|4839033_4839408_-	PTS sorbitol transporter	NA	NA	NA	NA
QAT11410.1\|4839404_4839926_-	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA
QAT11411.1\|4840038_4840323_-	transcriptional regulator	A0A2I7S995	Vibrio_phage	4.6e-17	64.7
QAT11412.1\|4840417_4840774_+	XRE family transcriptional regulator	NA	NA	NA	NA
QAT11413.1\|4841092_4843162_-	DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	8.7e-73	34.6
QAT11414.1\|4843197_4843413_-	AlpA family transcriptional regulator	NA	NA	NA	NA
QAT11415.1\|4847881_4848529_-	hypothetical protein	NA	NA	NA	NA
4849943:4849989	attL	NA	NA	NA	NA
QAT11416.1\|4850074_4851121_-	hypothetical protein	NA	NA	NA	NA
QAT11417.1\|4851110_4852151_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.7e-189	92.7
QAT11418.1\|4852154_4852787_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	3.8e-64	57.1
QAT11419.1\|4852903_4853146_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	6.8e-38	97.5
QAT11420.1\|4853178_4853688_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	3.9e-83	94.7
QAT11421.1\|4853695_4853896_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	2.4e-33	100.0
QAT11422.1\|4853859_4854201_+	hypothetical protein	E5G6L5	Salmonella_phage	1.7e-55	97.3
QAT11423.1\|4854268_4854502_+	DUF2732 family protein	E5G6L6	Salmonella_phage	1.2e-31	96.1
QAT11424.1\|4854501_4854729_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	3.0e-35	97.3
QAT11425.1\|4854725_4855583_+	DNA adenine methylase	E5G6L8	Salmonella_phage	1.1e-159	96.1
QAT11426.1\|4855579_4857994_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	98.6
QAT12218.1\|4858147_4858336_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
QAT11427.1\|4858693_4859371_+	hypothetical protein	NA	NA	NA	NA
QAT11428.1\|4860851_4861886_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	5.9e-171	87.3
QAT11429.1\|4861885_4863652_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.1
QAT11430.1\|4863794_4864628_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
QAT11431.1\|4864644_4865703_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.9e-180	93.1
QAT11432.1\|4865706_4866357_+	hypothetical protein	E5G6M7	Salmonella_phage	8.7e-112	96.3
QAT11433.1\|4866452_4866917_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.1e-76	89.0
QAT11434.1\|4866916_4867120_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	5.2e-31	91.0
QAT11435.1\|4867123_4867339_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
QAT11436.1\|4867319_4867835_+	lysozyme	E5G6N1	Salmonella_phage	4.0e-88	91.8
QAT11437.1\|4867831_4868260_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.5e-59	91.5
QAT11438.1\|4868189_4868393_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	4.7e-24	79.1
QAT11439.1\|4868355_4868787_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.3e-71	93.0
QAT11440.1\|4868779_4869244_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	5.5e-60	83.6
QAT11441.1\|4869331_4869994_+	hypothetical protein	NA	NA	NA	NA
QAT11442.1\|4870077_4870842_+	hypothetical protein	NA	NA	NA	NA
QAT11443.1\|4870968_4871547_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	1.6e-93	86.5
QAT11444.1\|4871543_4871903_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	9.5e-52	86.6
QAT11445.1\|4871889_4872798_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	4.6e-143	90.4
QAT11446.1\|4872790_4873396_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.5e-110	92.5
QAT11447.1\|4873392_4875114_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	3.5e-152	78.9
QAT11448.1\|4875113_4875296_+	hypothetical protein	NA	NA	NA	NA
QAT12219.1\|4875276_4875429_-	hypothetical protein	U5P083	Shigella_phage	5.8e-11	71.1
QAT12220.1\|4876112_4876679_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	2.1e-85	85.2
QAT11449.1\|4876821_4877994_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.5e-202	89.2
QAT11450.1\|4878003_4878519_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	4.8e-89	94.7
QAT11451.1\|4878573_4878876_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
QAT11452.1\|4878890_4879010_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
QAT11453.1\|4879002_4882080_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.3
QAT11454.1\|4882076_4882562_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	4.8e-67	80.6
QAT12221.1\|4883748_4883967_+	transcriptional regulator	Q53ZE7	Salmonella_virus	1.9e-18	71.9
QAT11455.1\|4884370_4885144_+	RNA-directed DNA polymerase	NA	NA	NA	NA
QAT11456.1\|4885759_4886242_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
4885251:4885297	attR	NA	NA	NA	NA
QAT11457.1\|4886352_4886829_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
QAT11458.1\|4886818_4887109_+	RnfH family protein	NA	NA	NA	NA
QAT11459.1\|4887175_4887517_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
QAT11460.1\|4887664_4889326_-	DNA repair protein RecN	NA	NA	NA	NA
QAT11461.1\|4889412_4890291_-	NAD(+) kinase	NA	NA	NA	NA
QAT11462.1\|4890415_4891006_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
QAT11463.1\|4891125_4892412_-	DUF21 domain-containing protein	NA	NA	NA	NA
QAT11464.1\|4892431_4893223_-	inner membrane protein YpjD	NA	NA	NA	NA
QAT11465.1\|4893386_4894751_+	signal recognition particle protein	NA	NA	NA	NA
QAT11466.1\|4895010_4895259_+	30S ribosomal protein S16	NA	NA	NA	NA
QAT12222.1\|4895277_4895826_+	ribosome maturation factor RimM	NA	NA	NA	NA
QAT11467.1\|4895857_4896625_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_6

5003630 : 5054486

Salmonella_phage(42.11%)

integrase,holin,tail,terminase,capsid

attL 5003368:5003382|attR 5033110:5033124

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5003368:5003382	attL	NA	NA	NA	NA
QAT11560.1\|5003630_5003894_+\|holin	nicotinic acetylcholine receptor subunit beta	NA	NA	NA	NA
QAT11561.1\|5003890_5004151_+	hypothetical protein	NA	NA	NA	NA
QAT11562.1\|5004147_5004360_+	hypothetical protein	NA	NA	NA	NA
QAT11563.1\|5004356_5004983_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	5.0e-24	37.2
QAT11564.1\|5004997_5007448_+	DNA primase	Q7M2A8	Enterobacteria_phage	3.1e-138	38.0
QAT11565.1\|5007754_5008153_+	hypothetical protein	NA	NA	NA	NA
QAT11566.1\|5008393_5009014_-	hypothetical protein	NA	NA	NA	NA
QAT11567.1\|5009014_5010139_-	ATP-binding protein	NA	NA	NA	NA
QAT12226.1\|5010096_5010366_-	hypothetical protein	NA	NA	NA	NA
QAT11568.1\|5011220_5011541_+	superinfection immunity protein	A0A0S2SY85	Pseudomonas_phage	4.7e-18	45.0
QAT11569.1\|5011570_5011948_+	hypothetical protein	A0A0M4QWT0	Salmonella_phage	5.3e-21	45.5
QAT11570.1\|5012242_5012569_+	hypothetical protein	NA	NA	NA	NA
QAT11571.1\|5015539_5015824_+	hypothetical protein	NA	NA	NA	NA
QAT11572.1\|5016027_5016399_+	hypothetical protein	F1C5E3	Cronobacter_phage	9.2e-34	58.7
QAT11573.1\|5016569_5017199_+	hypothetical protein	NA	NA	NA	NA
QAT11574.1\|5017968_5018328_-	hypothetical protein	NA	NA	NA	NA
QAT11575.1\|5018569_5018815_+	hypothetical protein	NA	NA	NA	NA
QAT11576.1\|5019600_5019792_+	hypothetical protein	NA	NA	NA	NA
QAT11577.1\|5019822_5020302_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
QAT11578.1\|5020485_5021565_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
QAT11579.1\|5021614_5021833_+	hypothetical protein	NA	NA	NA	NA
QAT11580.1\|5021816_5023208_-	exodeoxyribonuclease VII large subunit	A0A2H4UVM9	Bodo_saltans_virus	6.3e-35	33.0
QAT11581.1\|5023366_5024833_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.5e-87	38.7
QAT11582.1\|5024900_5026478_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
QAT11583.1\|5026669_5027923_+\|integrase	site-specific integrase	A0A1X9TCT6	Enterobacter_phage	3.5e-202	83.6
QAT11584.1\|5028184_5028847_-	serine/threonine protein phosphatase	K7P6H8	Enterobacteria_phage	4.7e-97	75.5
QAT11585.1\|5028843_5029446_-	adenine methylase	A0A193GYV6	Enterobacter_phage	4.0e-103	92.4
QAT11586.1\|5029442_5029949_-	hypothetical protein	NA	NA	NA	NA
QAT11587.1\|5029945_5030104_-	DUF1317 family protein	T1SAR0	Salmonella_phage	8.7e-18	80.8
QAT12227.1\|5030144_5030390_-	PerC family transcriptional regulator	Q858E4	Salmonella_phage	6.5e-28	75.3
QAT11588.1\|5030797_5031820_-	recombination protein RecT	Q858E1	Salmonella_phage	4.0e-180	95.3
QAT11589.1\|5031829_5032729_-	endonuclease	Q858E0	Salmonella_phage	6.5e-158	91.0
QAT11590.1\|5032725_5033025_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
QAT11591.1\|5033391_5033973_-	XRE family transcriptional regulator	Q858D7	Salmonella_phage	7.1e-65	64.3
5033110:5033124	attR	NA	NA	NA	NA
QAT11592.1\|5034127_5034361_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
QAT11593.1\|5034507_5034717_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
QAT11594.1\|5034716_5035484_+	primosomal protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
QAT11595.1\|5035480_5036266_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
QAT11596.1\|5036385_5036733_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.9e-49	81.7
QAT11597.1\|5036925_5037327_+	hypothetical protein	A0A2H4N7F5	Pectobacterium_phage	8.7e-22	51.6
QAT11598.1\|5037603_5037858_+	hypothetical protein	NA	NA	NA	NA
QAT12228.1\|5037857_5038121_+	hypothetical protein	A0A2P0P958	Salmonella_phage	3.5e-27	65.5
QAT11599.1\|5038814_5039054_+	hypothetical protein	G8C7S3	Escherichia_phage	8.6e-09	51.7
QAT11600.1\|5039053_5039392_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	3.1e-44	79.1
QAT11601.1\|5039466_5039724_+	lF-82	NA	NA	NA	NA
QAT11602.1\|5039801_5040386_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	9.9e-91	88.6
QAT11603.1\|5040382_5041858_+\|terminase	terminase	Q858H3	Salmonella_phage	2.4e-279	92.4
QAT11604.1\|5041900_5042272_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	6.8e-61	93.5
QAT11605.1\|5042322_5042523_+	hypothetical protein	NA	NA	NA	NA
QAT11606.1\|5042859_5043048_+	hypothetical protein	NA	NA	NA	NA
QAT11607.1\|5043069_5043273_+	hypothetical protein	NA	NA	NA	NA
QAT11608.1\|5043276_5044956_+\|tail	phage tail protein	T1S9Z7	Salmonella_phage	3.6e-194	59.3
QAT11609.1\|5044952_5045258_+	hypothetical protein	Q2A090	Sodalis_phage	1.1e-16	51.3
QAT12229.1\|5045539_5045938_+	peptidase	T1SAP9	Salmonella_phage	5.6e-37	59.5
QAT11610.1\|5045950_5046958_+\|capsid	phage capsid protein	T1S9H9	Salmonella_phage	2.1e-181	92.8
QAT11611.1\|5046967_5047360_+	hypothetical protein	T1SA71	Salmonella_phage	1.5e-55	89.9
QAT11612.1\|5047352_5047631_+	hypothetical protein	T1SA01	Salmonella_phage	1.1e-20	58.9
QAT11613.1\|5048289_5050767_+	hypothetical protein	G9L6D0	Escherichia_phage	2.3e-266	56.4
QAT11614.1\|5050768_5051239_+	hypothetical protein	Q858G2	Salmonella_phage	9.5e-44	55.3
QAT11615.1\|5051231_5051729_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	8.9e-24	41.7
QAT11616.1\|5051741_5054486_+	hypothetical protein	A0A193GYI3	Enterobacter_phage	6.7e-97	39.7

DBSCAN-SWA_7

5061682 : 5068901

Salmonella_phage(57.14%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT11623.1\|5061682_5061979_-	hypothetical protein	T1SA06	Salmonella_phage	1.2e-23	62.7
QAT11624.1\|5063674_5064592_+	hypothetical protein	H6X4Y8	Enterobacteria_phage	9.6e-16	34.9
QAT11625.1\|5064633_5064921_+	hypothetical protein	NA	NA	NA	NA
QAT11626.1\|5065033_5065438_+	hypothetical protein	T1SA79	Salmonella_phage	2.1e-55	82.6
QAT11627.1\|5065424_5065730_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	4.6e-39	81.4
QAT11628.1\|5065719_5066349_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.5e-92	78.4
QAT11629.1\|5066345_5066846_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	1.1e-69	90.0
QAT11630.1\|5067032_5068901_-	phosphatase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6

DBSCAN-SWA_8

5433021 : 5439924

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT11935.1\|5433021_5433885_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.0e-07	22.5
QAT11936.1\|5433895_5434669_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
QAT12246.1\|5434909_5435803_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
QAT11937.1\|5436048_5437410_-	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
QAT11938.1\|5437726_5438449_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	1.4e-30	33.2
QAT11939.1\|5438445_5439924_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_9

5481110 : 5489485

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT11964.1\|5481110_5482517_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.8e-37	28.7
QAT11965.1\|5482738_5483803_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.4e-105	55.0
QAT11966.1\|5484729_5485620_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
QAT11967.1\|5485634_5486189_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
QAT11968.1\|5486368_5487535_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
QAT11969.1\|5488480_5489485_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.8e-31	29.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP035180

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP035179

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection