CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP024652	Escherichia coli strain BH100 substr. MG2014 plasmid pBH100-1, complete sequence	0 crisprs	csa3	0	1
CP024651	Escherichia coli strain BH100 substr. MG2014 plasmid pAp, complete sequence	0 crisprs	NA	0	0
CP024650	Escherichia coli strain BH100 substr. MG2014 chromosome, complete genome	5 crisprs	cas3,DEDDh,DinG,csa3,RT,PD-DExK,WYL	5	7

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 48415

Escherichia_phage(29.41%)

integrase,transposase

attL 3416:3430|attR 38145:38159

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATV12228.1\|1715_2576_+\|transposase	transposase	NA	NA	NA	NA
ATV12229.1\|2626_4171_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-38	34.6
3416:3430	attL	NA	NA	NA	NA
ATV12230.1\|4293_5817_+\|transposase	IS21 family transposase IS1326	A0A2L1IVA1	Escherichia_phage	1.2e-15	24.2
ATV12340.1\|5806_6589_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	2.5e-33	35.0
ATV12231.1\|6764_7265_-	N-acetyltransferase	NA	NA	NA	NA
ATV12232.1\|7283_7463_+	hypothetical protein	NA	NA	NA	NA
ATV12233.1\|7392_8232_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
ATV12234.1\|8225_8573_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
ATV12341.1\|8736_9528_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
ATV12235.1\|9676_10690_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
ATV12236.1\|10628_11243_+	DUF3330 domain-containing protein	NA	NA	NA	NA
ATV12237.1\|11368_11929_+	DNA resolvase	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
ATV12238.1\|11931_14898_+\|transposase	Tn3 family transposase TnAs3	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
ATV12239.1\|14964_15342_+	N-acetyltransferase	NA	NA	NA	NA
ATV12240.1\|15542_16202_-	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
ATV12241.1\|16255_16447_+	hypothetical protein	NA	NA	NA	NA
ATV12342.1\|18987_19269_+	hypothetical protein	NA	NA	NA	NA
ATV12343.1\|19391_19742_-	protein stbB	NA	NA	NA	NA
ATV12243.1\|19744_20707_-	plasmid segregation protein ParM	A0A222YXF2	Escherichia_phage	4.1e-94	53.9
ATV12344.1\|20853_21147_+	hypothetical protein	NA	NA	NA	NA
ATV12244.1\|21087_21267_-	hypothetical protein	NA	NA	NA	NA
ATV12245.1\|21223_21907_+	DNA methylase	A0A2I7RE86	Vibrio_phage	5.6e-29	37.4
ATV12246.1\|21907_22129_+	hypothetical protein	NA	NA	NA	NA
ATV12247.1\|22142_22577_+	DUF1380 domain-containing protein	NA	NA	NA	NA
ATV12248.1\|23276_23849_+	DUF1472 domain-containing protein	NA	NA	NA	NA
ATV12345.1\|23944_24247_+	antirestriction protein	NA	NA	NA	NA
ATV12249.1\|24293_24716_+	DUF1380 domain-containing protein	NA	NA	NA	NA
ATV12250.1\|24712_24904_+	hypothetical protein	NA	NA	NA	NA
ATV12251.1\|25176_25425_-	hypothetical protein	NA	NA	NA	NA
ATV12252.1\|25939_26170_+	hypothetical protein	NA	NA	NA	NA
ATV12253.1\|26221_27583_+	DUF3560 domain-containing protein	NA	NA	NA	NA
ATV12254.1\|27629_28193_+	class I SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	4.7e-21	37.3
ATV12255.1\|28192_28453_+	hypothetical protein	NA	NA	NA	NA
ATV12346.1\|28344_28572_+	transporter	NA	NA	NA	NA
AUD55465.1\|28754_28982_-	hypothetical protein	NA	NA	NA	NA
ATV12256.1\|29007_29574_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	8.5e-47	74.4
ATV12257.1\|29631_29865_+	DUF905 domain-containing protein	NA	NA	NA	NA
ATV12258.1\|29925_31347_+	chromosome partitioning protein ParB	G8DH78	Emiliania_huxleyi_virus	1.2e-20	29.2
ATV12259.1\|31416_32625_+\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
ATV12260.1\|32990_34196_-	sodium/glutamate symporter	NA	NA	NA	NA
ATV12261.1\|34639_34960_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
ATV12347.1\|34993_35107_+	ABC transporter	NA	NA	NA	NA
ATV12262.1\|35145_36126_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.7e-183	98.8
ATV12263.1\|36585_37137_-	carboxymuconolactone decarboxylase	NA	NA	NA	NA
ATV12264.1\|37133_38477_-	aspartate aminotransferase family protein	NA	NA	NA	NA
38145:38159	attR	NA	NA	NA	NA
ATV12265.1\|38609_39467_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
ATV12266.1\|39796_40237_+	XRE family transcriptional regulator	NA	NA	NA	NA
ATV12267.1\|40867_41683_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	4.3e-161	98.5
ATV12348.1\|41833_41974_+	ABC transporter	NA	NA	NA	NA
ATV12268.1\|43036_43405_+	amino acid-binding protein	NA	NA	NA	NA
ATV12269.1\|43412_44099_+	ArsR family transcriptional regulator	NA	NA	NA	NA
ATV12270.1\|44076_44703_-	transcriptional regulator	NA	NA	NA	NA
ATV12271.1\|44781_45987_+	tetracycline efflux MFS transporter Tet(B)	NA	NA	NA	NA
ATV12272.1\|46099_46768_-	putative tetracyline resistance transcriptional regulator TetC	NA	NA	NA	NA
AUD55466.1\|47206_48415_-\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP024650

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CRISPR-Cas detection and classification

Crispr_ID: CP024650_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024650_1

938483-938630

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP024650_1

>merge|CP024650|1|938483-938630|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAAGCACACGTCGAGCTGGTGGGGATTAATGCTGGGTTCACTGCCGTACAGGCAGCTTAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACAAGCTCACTGCCGTACAGGCAGATAAAATG

>CP024650|1|1|938483-938630|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCACACGTCGAGCTGGTGGGGATTAATGCTGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGCCGCGGATCCTGTCTGCCAATAATGACAA
GCTCACTGCCGTACAGGCAGATAAAATG

Protein	Signature genes	Signature genes Name	Protein_function
CP024650.2\|ATV08066.1\|934220_934502_+\|hypothetical-protein	unknown	unknown	unknown
CP024650.2\|ATV08065.1\|933732_934218_+\|DUF1441-domain-containing-protein	unknown	unknown	gnl\|CDD\|311303
CP024650.2\|ATV08074.1\|941983_943750_-\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|236870
CP024650.2\|ATV08076.1\|945381_945876_+\|leucine-responsive-regulatory-protein	unknown	unknown	gnl\|CDD\|183009
CP024650.2\|ATV08063.1\|931356_931563_+\|hypothetical-protein	unknown	unknown	unknown
CP024650.2\|ATV08064.1\|931562_933476_+\|peptidase	unknown	unknown	gnl\|CDD\|132927
CP024650.2\|ATV08080.1\|952244_953537_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
CP024650.2\|ATV08067.1\|934506_934686_+\|hypothetical-protein	unknown	unknown	unknown
CP024650.2\|ATV08075.1\|943872_944838_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
CP024650.2\|ATV08061.1\|930256_930514_+\|hypothetical-protein	unknown	unknown	unknown
CP024650.2\|ATV08069.1\|935642_935963_+\|ATP-dependent-Clp-protease-adaptor-ClpS	unknown	unknown	gnl\|CDD\|178809
CP024650.2\|ATV08068.1\|934786_935026_+\|hypothetical-protein	unknown	unknown	unknown
CP024650.2\|ATV08072.1\|939515_940220_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
CP024650.2\|ATV08062.1\|930510_930933_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
CP024650.2\|ATV08073.1\|940261_941983_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
CP024650.2\|ATV08077.1\|946010_950030_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
CP024650.2\|ATV08078.1\|950188_950800_+\|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl\|CDD\|129638
CP024650.2\|ATV08070.1\|935993_938270_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
CP024650.2\|ATV08079.1\|950810_952154_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
CP024650.2\|ATV08071.1\|939012_939231_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954

Protein	Function_ID	Function_description	E-value
CP024650.2\|ATV08065.1\|933732_934218_+\|DUF1441-domain-containing-protein	gnl\|CDD\|311303	pfam07278, DUF1441, Protein of unknown function (DUF1441). This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown. However, it appears to be distantly related to other HTH families so may act as a transcriptional regulator.	2.65817e-39
CP024650.2\|ATV08080.1\|952244_953537_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
CP024650.2\|ATV08074.1\|941983_943750_-\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP024650.2\|ATV08076.1\|945381_945876_+\|leucine-responsive-regulatory-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
CP024650.2\|ATV08064.1\|931562_933476_+\|peptidase	gnl\|CDD\|132927	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function.	5.13418e-81
CP024650.2\|ATV08075.1\|943872_944838_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
CP024650.2\|ATV08069.1\|935642_935963_+\|ATP-dependent-Clp-protease-adaptor-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
CP024650.2\|ATV08072.1\|939515_940220_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.60016e-139
CP024650.2\|ATV08062.1\|930510_930933_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	8.45973e-25
CP024650.2\|ATV08073.1\|940261_941983_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP024650.2\|ATV08077.1\|946010_950030_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
CP024650.2\|ATV08078.1\|950188_950800_+\|outer-membrane-lipoprotein-carrier-protein-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
CP024650.2\|ATV08070.1\|935993_938270_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
CP024650.2\|ATV08079.1\|950810_952154_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
CP024650.2\|ATV08071.1\|939012_939231_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49

>CP024650.2|ATV08070.1|935993_938270_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGSRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>CP024650.2|ATV08069.1|935642_935963_+|ATP-dependent-Clp-protease-adaptor-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>CP024650.2|ATV08068.1|934786_935026_+|hypothetical-protein
MQLHVSIFPKQENPFSGEGAIMFVIPVPLKRNTRFRRSWWTHSHIQLTLRVSIADPQTTTRQQNVTRFSRSMASLDPLS
>CP024650.2|ATV08067.1|934506_934686_+|hypothetical-protein
MIFSKFASGEHRGNQPNPLILPESPIGGGWAACCGLFHHWWKSGATTGLDHQYGDAATE
>CP024650.2|ATV08066.1|934220_934502_+|hypothetical-protein
MTESEILRLIRCAGGISQLADEQAAQPDTVTAENYARVVAEVMLRDGIELNGVDMRNIRTRVLELLAYRRRSQQRRESAKNTYQWKRPERLRR
>CP024650.2|ATV08065.1|933732_934218_+|DUF1441-domain-containing-protein
MDRELKNLMLNINQLAAIAGICRQTAAARLKNIQPAGGHDKLKLYRVTDILTCFLDLPVPASLEEMEPHDRKAWYQSERERLKFEQETAQLIPADDVRKEMAIWGEIVSEELAKLPNILARDAGLKPMAVNRVQSIIDDLRNQIISRMVKNDVVNEVAKQA
>CP024650.2|ATV08064.1|931562_933476_+|peptidase
MNRWYTIKAADVRGAADISIYEEIGGFGVTAKQFAEDLKALGDVSHINLRIHSPGGDVFEGIAIYNLLRNHPADITVYIDGVAASMASVVAMAGDRVVMPENAMMMIHKPWGISGGNAGDMRDYADLLDKVETVLIPAYARKTGKSAQEITAMLEDETWMDGKECLKHGFADELLPSVRAMARIESKRTGDFLHMPETIKGMITPPQGAANIAGNEQKRINGISEVFSLFGSRYDGIKMACLEDASCTPEMAREKLLNELGRESTPSNKNTPPHIYAGNGNITGDAIRQGLYSRLGYERPERGNPYAMMSLFEMAQASLVDRGITVSGFINRSQVVNAAFTHSSSDFSHILAGGAEKSVLKGWQDSGETFQKWTRTGSLSNFHEAKRVGLNGFSKLDKVPEGAEYKYITTSDKGVPIALATYGNIFSVTRQAIINDDLTQLTTIPMAMGRAAARTVGNLVYLLLTSNGKFTDGKALFHADHKNLIAKDMDMVGLDEARKRMRLQEDANGDSLNITPAFVLVPAALESAARRAILSSSSVFPVGDESTINQNPGIINVVKDMAEVIVEPRLDKANSKEWYVAAAKGMDTIEVAYLDGMDTPYLEEQVGFTVDGVAWKVRIDAGVAALDYRGLLKSSGA
>CP024650.2|ATV08063.1|931356_931563_+|hypothetical-protein
MNCINDLNTGEVKGGSVHLDAQTVMRLKQYRIDHINHHPNKPLPGVAQIVRHAVNTWLNQNGFASVGE
>CP024650.2|ATV08062.1|930510_930933_+|single-stranded-DNA-binding-protein
MTAQIAAYGRLVADPQLKTTSKGTQMTMASMAVPLPCSQADDGQATMWLSVIAFGRQAEALAKHRKGELLSVAGNMQVNQWTGQNGETRQGWQVIADSVISARTARPGGKKGQQGQATDALNRAKQQAGNDDPYGDNIPF
>CP024650.2|ATV08061.1|930256_930514_+|hypothetical-protein
MHTSGKLNNQKKQHSRPIDLTEHWLRVAIKIIDRNAGEGYAKAHPELISAFMTTAAANFATLTEREIAEAEQVTTINVKTGEQTA
>CP024650.2|ATV08071.1|939012_939231_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>CP024650.2|ATV08072.1|939515_940220_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>CP024650.2|ATV08073.1|940261_941983_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLTRQGRYYQFKQGL
>CP024650.2|ATV08074.1|941983_943750_-|thiol-reductant-ABC-exporter-subunit-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAIYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGIDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>CP024650.2|ATV08075.1|943872_944838_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>CP024650.2|ATV08076.1|945381_945876_+|leucine-responsive-regulatory-protein
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>CP024650.2|ATV08077.1|946010_950030_+|DNA-translocase-FtsK
MSQEYTEDKEITLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDEEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPTQPTVAWQPVPGPQTGEPVIAPAPEGYPHQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPVQQPYYAPAAEQPVQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQYQQPQYQQPQQPVAQQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVAPQPHDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGVGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>CP024650.2|ATV08078.1|950188_950800_+|outer-membrane-lipoprotein-carrier-protein-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>CP024650.2|ATV08079.1|950810_952154_+|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>CP024650.2|ATV08080.1|952244_953537_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Crispr_ID: CP024650_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024650_2

2413099-2413212

Orphan

Consensus_repeat	Method
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024650_2

>merge|CP024650|2|2413099-2413212|CRISPRCasFinder
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCACTGGATGCCCAGATGCGGCATGAACGCCCTACCCAGCCTACGATGCGGTTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA

>CP024650|2|2|2413099-2413212|CRISPRCasFinder
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	CTGGATGCCCAGATGCGGCATGAACGCCCTACCCAGCCTACGATGCGG
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP024650.2\|ATV09439.1\|2413236_2414367_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
CP024650.2\|ATV09430.1\|2394255_2398860_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
CP024650.2\|ATV09444.1\|2418239_2419868_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
CP024650.2\|ATV09433.1\|2401250_2403878_-\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
CP024650.2\|ATV09434.1\|2404024_2404747_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
CP024650.2\|ATV09438.1\|2410761_2413047_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
CP024650.2\|ATV09429.1\|2392605_2394255_-\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
CP024650.2\|ATV09443.1\|2416608_2417967_-\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
CP024650.2\|ATV09445.1\|2419857_2421117_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	unknown	unknown	gnl\|CDD\|225617
CP024650.2\|ATV09427.1\|2390566_2391751_+\|acetyl-CoA-C-acyltransferase-FadA	unknown	unknown	gnl\|CDD\|180261
CP024650.2\|ATV09447.1\|2422496_2423456_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182167
CP024650.2\|ATV09428.1\|2391824_2392601_-\|DUF2135-domain-containing-protein	unknown	unknown	gnl\|CDD\|227021
CP024650.2\|ATV09432.1\|2399413_2401102_-\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
CP024650.2\|ATV09442.1\|2415527_2416604_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
CP024650.2\|ATV09441.1\|2414674_2415325_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182136
CP024650.2\|ATV09440.1\|2414366_2414621_+\|ferredoxin	unknown	unknown	gnl\|CDD\|182668
CP024650.2\|ATV09446.1\|2421113_2422304_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
CP024650.2\|ATV09448.1\|2423468_2423654_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182167
CP024650.2\|ATV12102.1\|2406321_2410080_-\|AIDA-I-family-autotransporter-YfaL	unknown	unknown	gnl\|CDD\|182059
CP024650.2\|ATV09431.1\|2398793_2399417_-\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774

Protein	Function_ID	Function_description	E-value
CP024650.2\|ATV09439.1\|2413236_2414367_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
CP024650.2\|ATV09430.1\|2394255_2398860_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
CP024650.2\|ATV09444.1\|2418239_2419868_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
CP024650.2\|ATV09433.1\|2401250_2403878_-\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
CP024650.2\|ATV09434.1\|2404024_2404747_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.45677e-171
CP024650.2\|ATV09438.1\|2410761_2413047_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
CP024650.2\|ATV09429.1\|2392605_2394255_-\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	8.69726e-124
CP024650.2\|ATV09443.1\|2416608_2417967_-\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
CP024650.2\|ATV09445.1\|2419857_2421117_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
CP024650.2\|ATV09427.1\|2390566_2391751_+\|acetyl-CoA-C-acyltransferase-FadA	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
CP024650.2\|ATV09447.1\|2422496_2423456_+\|hypothetical-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
CP024650.2\|ATV09428.1\|2391824_2392601_-\|DUF2135-domain-containing-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	4.7479e-153
CP024650.2\|ATV09432.1\|2399413_2401102_-\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
CP024650.2\|ATV09442.1\|2415527_2416604_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
CP024650.2\|ATV09441.1\|2414674_2415325_-\|hypothetical-protein	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	3.42273e-158
CP024650.2\|ATV09440.1\|2414366_2414621_+\|ferredoxin	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
CP024650.2\|ATV09446.1\|2421113_2422304_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
CP024650.2\|ATV09448.1\|2423468_2423654_+\|hypothetical-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	7.27111e-31
CP024650.2\|ATV12102.1\|2406321_2410080_-\|AIDA-I-family-autotransporter-YfaL	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
CP024650.2\|ATV09431.1\|2398793_2399417_-\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	4.78627e-139

>CP024650.2|ATV09438.1|2410761_2413047_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>CP024650.2|ATV12102.1|2406321_2410080_-|AIDA-I-family-autotransporter-YfaL
MRIIFLRKEYLSLLPSMIASLFSGNGAAAVIDSCQGYDIKASCQASRQSLSGNMQDWSIADGQWLIFSGMANNASGGAVFLQHSAEFTISPQNETGMTLFADNSVSGEYNNGGAIFAKENSTINLANVIFDSNVAGGYGGAIYSAGTNDTGAADLRVTNAVFHNNIANDGKGGAIYTINNDVYLSDDAFNNNQAYTSTSYSDGDGGAIDVTDNSTDNTHLSGKTIINNTSFTNNYAEGYGGAIYTSSTTSPYLIDISVDDNYDQNNGVMIDENNSASGYDHSATAAAGGFMYIGHSVAEFNIAADKTLVIGNTSNDGAIDSLAGTGVIVKEGAGELVLNADNNAFTGEMSIQNGEVTLGRSDELMNVGDTHCQSDPQDCFGLMVGSTVHSEYQAELNVGNTQQTFVHSLTGFANGILNIDAGGNVTVNQGGFSGSIQGEGQLTVAQDGSYLLTGAQSMALTGDIVVEDNAVLSLAGNQADLRAMQSDPQSIVLNGGVLDLSDFTTWDGDSSYNDGLQISGSGGTVIGSNDVVDISSGDDLHIGGSDASQNGVYVVINAGDQRVTLANNNGYLGNTQIASGTLEVSDNSQLGDTSYNRSVIFTDPQQHSEMDVTTDVDTRSATTGQGRNIEMRADGEIHVEDGVDTQWGGLMADSTGQQLDSVSTLTKSGGGTLELTASGTATSAVRVEDGTLKGEAENIIPYVSSLWVGEDGVFETGQNQDIRSIDATSGGDIDITDGTVLRLTQQDTNQALDASLFSGDGTLVNATDGVTLAGELNTNLETDSLTYLSDVTVNGNLTNTSGAISLQNSVAGDTLTVNGDYTGGGTLFLDSELNGDDSASDQLVLNGNTSGNTTVVVNPITGIGEPTSTGIKVVDFAADPAQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVNPTPPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYFNNLRAANQAFVMERRDHAGGDGQTLNLRVIGGRYHYTAVGQLAQHEDTSTVQLSGNLFSGHWGDDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWYQHGNQKQGAWLDSWLQYVWFNNDVSEQDDGVDHYHSSGIIASLEAGYQWLPGHGVVIEPQTQVIYQGVHQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVGVTPTLDLNYYHDPHATEIEEDGSTISDDAVKQRGEIKVGITGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>CP024650.2|ATV09434.1|2404024_2404747_+|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHKEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHMTGLHYNPITNTFKLGPGVDVNYMLHTQNK
>CP024650.2|ATV09433.1|2401250_2403878_-|DNA-gyrase-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>CP024650.2|ATV09432.1|2399413_2401102_-|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGLGAIVLLSTGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKLNSETIPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEAAAIASDLLSGKKRWETSFGLEERTAEKTPVRQRIVVSARLLGFGYQRLVPSFAGMRFEMGNDGWHSFLALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGGAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQALNKTRPAMVDVIPTDGIVPLYINPQGMAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>CP024650.2|ATV09431.1|2398793_2399417_-|DUF1175-domain-containing-protein
MRHGLLVLICWLYCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANEALKVHDSKWLKSNGLSNQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYIIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>CP024650.2|ATV09430.1|2394255_2398860_-|alpha-2-macroglobulin-family-protein
MDTQRFQSQFHWHLSFKFSGAIAACLSLSLVGTGLANADDSLPSSNYAPPAGGTFFLLADSSFSRSEEAKVRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPVEPQQGVKLEGASSNFISPQPGNIYIPLGKQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKTGSEILWTDGLGVMTRGVTDGSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRKQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDDNGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELQSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTSHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKSLYMKWSMPTVYRMGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMFGGGDNALTLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTKDFSEADTSDINDSMILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAPGSEWIGMQVK
>CP024650.2|ATV09429.1|2392605_2394255_-|DUF2300-domain-containing-protein
MNWYRIVWLLALVTLPTLAEETPLQLALRGAQHDQLYQLSSSGVTKVSVLPDTLTTPLGSLWKLYIYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDSALVRSCGLYFAPQRLHIGADMWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATALNRVLPVPTQVASGQCVLVDLFARYPLKKVTEEKSTTAVKPGVLNGRYRVTFANGNHMTFVSHGETTLLTVKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTYLQQNADRDGDCLSIPDSSATQRVSASPATVGARTMTAWTQDLIYAGDPVHYHGSRVTEGTLSWRHATAQAGQGERYDQILAFAYPDNNLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLISGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>CP024650.2|ATV09428.1|2391824_2392601_-|DUF2135-domain-containing-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQTINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTLGAGAIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>CP024650.2|ATV09427.1|2390566_2391751_+|acetyl-CoA-C-acyltransferase-FadA
MKNCVIVSAVRTAIGCFNGSLASTSAIDLGATVIKAAIERAKIDSLHIDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALATQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKADSTTEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLNPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKTLGFEPEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN
>CP024650.2|ATV09439.1|2413236_2414367_+|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>CP024650.2|ATV09440.1|2414366_2414621_+|ferredoxin
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>CP024650.2|ATV09441.1|2414674_2415325_-|hypothetical-protein
MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>CP024650.2|ATV09442.1|2415527_2416604_-|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNVLEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>CP024650.2|ATV09443.1|2416608_2417967_-|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>CP024650.2|ATV09444.1|2418239_2419868_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVHVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNSRPCTTADLALPGSQEPAEATLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>CP024650.2|ATV09445.1|2419857_2421117_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTEIHSGLESLRQQAPAHPYTLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLKVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLANDKLWHWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERDGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDEALRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>CP024650.2|ATV09446.1|2421113_2422304_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>CP024650.2|ATV09447.1|2422496_2423456_+|hypothetical-protein
MTESTTSSPHDAVFKTFMFSPDAARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSEGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQKERLMTIAERLRQEGHQIGWQEGKIEGWQEGKLEGLQKGKVEGMHEQAIKIALRMLEQGFEREIVLATTQLTDADIPNCY
>CP024650.2|ATV09448.1|2423468_2423654_+|hypothetical-protein
MTIAERLRQEGHQIGWQEGKLEGMHEQAIKIALRMLEQGIDRDQVLAATQLSEADLAANNH

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Crispr_ID: CP024650_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024650_3

4298016-4298217

Orphan

Consensus_repeat	Method
GTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA	PILER-CR

2 spacers

The CRISPR arrays of CP024650_3

>merge|CP024650|3|4298016-4298217|PILER-CR
CGCATCCGGCAATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGTATCCGGCATACAGTGCCCGATGCGACGCTGCCGCGTCTTATCGGGCCTACAAAAGTTCTGAACCGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA

>CP024650|3|1|4298016-4298217|PILER-CR
CGCATCCGGCAATTGGTGCACGATGCCTGATGCGAC	GCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGC
CGTATCCGGCATACAGTGCCCGATGCGACGCTGCCG	CGTCTTATCGGGCCTACAAAAGTTCTGAACCGTAGACCGGATAAGGCGTTCACGCC
GCATCCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
CP024650.2\|ATV11218.1\|4295044_4295533_-\|transcription/translation-regulatory-transformer-protein-RfaH	unknown	unknown	gnl\|CDD\|181611
CP024650.2\|ATV11213.1\|4290937_4292578_+\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	unknown	unknown	gnl\|CDD\|235310
CP024650.2\|ATV11214.1\|4292656_4292926_+\|twin-arginine-translocase-subunit-TatA	unknown	unknown	gnl\|CDD\|179592
CP024650.2\|ATV11225.1\|4299394_4301584_-\|fatty-acid-oxidation-complex-subunit-alpha-FadB	unknown	unknown	gnl\|CDD\|183293
CP024650.2\|ATV11215.1\|4292929_4293445_+\|twin-arginine-translocase-subunit-TatB	unknown	unknown	gnl\|CDD\|179334
CP024650.2\|ATV11220.1\|4297238_4297940_+\|NAD(P)H-flavin-reductase	unknown	unknown	gnl\|CDD\|236142
CP024650.2\|ATV11233.1\|4312766_4313753_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|236974
CP024650.2\|ATV11227.1\|4303104_4303719_+\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|183205
CP024650.2\|ATV11231.1\|4311766_4312351_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
CP024650.2\|ATV11219.1\|4295699_4297193_+\|3-octaprenyl-4-hydroxybenzoate-decarboxylase	unknown	unknown	gnl\|CDD\|236796
CP024650.2\|ATV11217.1\|4294265_4295048_+\|3'-5'-ssDNA/RNA-exonuclease-TatD	unknown	unknown	gnl\|CDD\|182449
CP024650.2\|ATV11228.1\|4303757_4305209_+\|Trk-system-potassium-transporter-TrkH	unknown	unknown	gnl\|CDD\|182698
CP024650.2\|ATV11232.1\|4312420_4312690_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368826
CP024650.2\|ATV11224.1\|4298221_4299385_-\|acetyl-CoA-C-acyltransferase-FadA	unknown	unknown	gnl\|CDD\|181592
CP024650.2\|ATV11230.1\|4311257_4311785_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|236750
CP024650.2\|ATV11229.1\|4305220_4305766_+\|menaquinone-dependent-protoporphyrinogen-IX-dehydrogenase	unknown	unknown	gnl\|CDD\|182966
CP024650.2\|ATV11212.1\|4290335_4290941_+\|ubiquinone-biosynthesis-protein-UbiJ	unknown	unknown	gnl\|CDD\|225706
CP024650.2\|ATV11216.1\|4293447_4294224_+\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|182840
CP024650.2\|ATV11226.1\|4301773_4303105_+\|Xaa-Pro-dipeptidase	unknown	unknown	gnl\|CDD\|237444
CP024650.2\|ATV11211.1\|4289566_4290322_+\|ubiquinone/menaquinone-biosynthesis-C-methyltransferase-UbiE	unknown	unknown	gnl\|CDD\|234689

Protein	Function_ID	Function_description	E-value
CP024650.2\|ATV11218.1\|4295044_4295533_-\|transcription/translation-regulatory-transformer-protein-RfaH	gnl\|CDD\|181611	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH.	7.04858e-121
CP024650.2\|ATV11213.1\|4290937_4292578_+\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	gnl\|CDD\|235310	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed.	0
CP024650.2\|ATV11214.1\|4292656_4292926_+\|twin-arginine-translocase-subunit-TatA	gnl\|CDD\|179592	PRK03554, tatA, Sec-independent protein translocase subunit TatA.	6.75664e-44
CP024650.2\|ATV11225.1\|4299394_4301584_-\|fatty-acid-oxidation-complex-subunit-alpha-FadB	gnl\|CDD\|183293	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB.	0
CP024650.2\|ATV11215.1\|4292929_4293445_+\|twin-arginine-translocase-subunit-TatB	gnl\|CDD\|179334	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB.	4.56825e-89
CP024650.2\|ATV11220.1\|4297238_4297940_+\|NAD(P)H-flavin-reductase	gnl\|CDD\|236142	PRK08051, fre, FMN reductase; Validated.	3.9413e-172
CP024650.2\|ATV11233.1\|4312766_4313753_+\|serine/threonine-protein-kinase	gnl\|CDD\|236974	PRK11768, PRK11768, serine/threonine protein kinase.	0
CP024650.2\|ATV11227.1\|4303104_4303719_+\|YigZ-family-protein	gnl\|CDD\|183205	PRK11568, PRK11568, IMPACT family protein.	4.48916e-152
CP024650.2\|ATV11231.1\|4311766_4312351_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	4.97316e-99
CP024650.2\|ATV11219.1\|4295699_4297193_+\|3-octaprenyl-4-hydroxybenzoate-decarboxylase	gnl\|CDD\|236796	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase.	0
CP024650.2\|ATV11217.1\|4294265_4295048_+\|3'-5'-ssDNA/RNA-exonuclease-TatD	gnl\|CDD\|182449	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD.	0
CP024650.2\|ATV11228.1\|4303757_4305209_+\|Trk-system-potassium-transporter-TrkH	gnl\|CDD\|182698	PRK10750, PRK10750, Trk system potassium transporter TrkH.	0
CP024650.2\|ATV11232.1\|4312420_4312690_+\|hypothetical-protein	gnl\|CDD\|368826	pfam06288, DUF1040, Protein of unknown function (DUF1040). This family consists of several bacterial YihD proteins of unknown function.	4.97051e-53
CP024650.2\|ATV11224.1\|4298221_4299385_-\|acetyl-CoA-C-acyltransferase-FadA	gnl\|CDD\|181592	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.	0
CP024650.2\|ATV11230.1\|4311257_4311785_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|236750	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional.	1.11706e-122
CP024650.2\|ATV11229.1\|4305220_4305766_+\|menaquinone-dependent-protoporphyrinogen-IX-dehydrogenase	gnl\|CDD\|182966	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase.	6.96931e-127
CP024650.2\|ATV11212.1\|4290335_4290941_+\|ubiquinone-biosynthesis-protein-UbiJ	gnl\|CDD\|225706	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown].	5.01909e-94
CP024650.2\|ATV11216.1\|4293447_4294224_+\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|182840	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC.	0
CP024650.2\|ATV11226.1\|4301773_4303105_+\|Xaa-Pro-dipeptidase	gnl\|CDD\|237444	PRK13607, PRK13607, proline dipeptidase; Provisional.	0
CP024650.2\|ATV11211.1\|4289566_4290322_+\|ubiquinone/menaquinone-biosynthesis-C-methyltransferase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	1.2623e-150

>CP024650.2|ATV11220.1|4297238_4297940_+|NAD(P)H-flavin-reductase
MTTLSCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDERDKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLTEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGDAFAFI
>CP024650.2|ATV11219.1|4295699_4297193_+|3-octaprenyl-4-hydroxybenzoate-decarboxylase
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA
>CP024650.2|ATV11218.1|4295044_4295533_-|transcription/translation-regulatory-transformer-protein-RfaH
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPSTPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
>CP024650.2|ATV11217.1|4294265_4295048_+|3'-5'-ssDNA/RNA-exonuclease-TatD
MFDIGVNLTSSQFAKDRDDVVARAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAVTEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQELAFVAQLRIAAELNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVARGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF
>CP024650.2|ATV11216.1|4293447_4294224_+|twin-arginine-translocase-subunit-TatC
MSVEDTQPLITHLIELRKRLLNCIISVIVIFLCLVYFANDIYHLVSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKGRNREEENDAEAESEKTEE
>CP024650.2|ATV11215.1|4292929_4293445_+|twin-arginine-translocase-subunit-TatB
MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVKDNETAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKTAAPSPSSSDKP
>CP024650.2|ATV11214.1|4292656_4292926_+|twin-arginine-translocase-subunit-TatA
MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV
>CP024650.2|ATV11213.1|4290937_4292578_+|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB
MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWMPNRHKDKPLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGILVSDVATLEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAFKEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGATLVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR
>CP024650.2|ATV11212.1|4290335_4290941_+|ubiquinone-biosynthesis-protein-UbiJ
MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGFSTSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLAALIRSGELEVQGDIQVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKALRGGAKFLHHGIKRQQRYVAEAITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK
>CP024650.2|ATV11211.1|4289566_4290322_+|ubiquinone/menaquinone-biosynthesis-C-methyltransferase-UbiE
MVDKSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMSFGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLKMGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVLKPGGRLLVLEFSKPIIEPLSKAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQDTLKTMMQDAGFESVDYYNLTAGVVALHRGYKF
>CP024650.2|ATV11224.1|4298221_4299385_-|acetyl-CoA-C-acyltransferase-FadA
MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARDLGLKPRACVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHKDVQFGLATMCIGLGQGIATVFERV
>CP024650.2|ATV11225.1|4299394_4301584_-|fatty-acid-oxidation-complex-subunit-alpha-FadB
MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIGLVDGVVKAEKLVEGAMAILRQAINGDLDWKAKRQPKLEPLKLSKIEAAMSFTIAKGMVAQTAGKHYPAPITAVKTIEAAARFGREEALNLENKSFVPLAHTNEARALVGIFLNDQYVKGKAKKLTKDVETPKQAAVLGAGIMGGGIAYQSAWKGVPVVMKDINDKSLTLGMTEAAKLLNKQLERGKIDGLKLAGVISTIHPTLDYAGFDRVDVVVEAVVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFNANRFGQKNGLGFWRYKEDSKGKPKKEEDVVVDDLLAKVSQPKRDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHLGPLYEVPEGMRNKARHNEPYYPPVEPARPVGDLKTA
>CP024650.2|ATV11226.1|4301773_4303105_+|Xaa-Pro-dipeptidase
MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLDDHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPNSFWTEDVEVIALPKADGIGSLLPAARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRSFKTEYELACMREAQKMAVNGHRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIVALNEHAAVLHYTKLDHQAPEEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKDVNDEQLALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIESLLAPWREGQFSKHFNWQKIEALKPFGGIRIEDNVVIHENNVENMTRDLKLA
>CP024650.2|ATV11227.1|4303104_4303719_+|YigZ-family-protein
MESWLIPAAPVMVVEEIKKSRFITLLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYSQLTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE
>CP024650.2|ATV11228.1|4303757_4305209_+|Trk-system-potassium-transporter-TrkH
MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFFVALAIGSMLWWPNRKEKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAFFESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQLYRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATIAIGGFSTHDASIGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRMFIGVQFSLVVICTLVLWFHNVYSSALMTINQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPERILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE
>CP024650.2|ATV11229.1|4305220_4305766_+|menaquinone-dependent-protoporphyrinogen-IX-dehydrogenase
MKTLILFSTRDGQTREIASYLASELKELGIQADVANVHRIEEPQWENYDRVVIGASIRYGHYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTNSYARKFLMSSQWRPDRCAVIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTDWEQVANFAREIAHLTDKPTLK
>CP024650.2|ATV11230.1|4311257_4311785_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLHFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLADFVVEWMQKQDG
>CP024650.2|ATV11231.1|4311766_4312351_-|molybdenum-cofactor-guanylyltransferase-MobA
MNLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIYQVSGLKVIEDSLADYPGPLAGMLSVMQQESGEWFLFCPCDTPYIPHDLASRLNHQRKDAPVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMAFMRLAGGHAVDFSDRKEAFINVNTPEELARWQEKR
>CP024650.2|ATV11232.1|4312420_4312690_+|hypothetical-protein
MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE
>CP024650.2|ATV11233.1|4312766_4313753_+|serine/threonine-protein-kinase
MNNSAFTFQTLHPDTIMDALFEHGIRVDSGLTPLNSYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWRDGPMFVDLDDARNGPAVQDLWMLLNGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLVYYLAWLMRRWADPAFPKNFPWLTGEDYWLRQTVTFIEQAKVLQEPPLQLTPMY

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Crispr_ID: CP024650_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024650_4

4358552-4358678

Orphan

Consensus_repeat	Method
GTAGGCCGGATAAGGCACTCGTGCCGCATCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024650_4

>merge|CP024650|4|4358552-4358678|CRISPRCasFinder
GTAGGCCGGATAAGGCACTCGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCA

>CP024650|4|3|4358552-4358678|CRISPRCasFinder
GTAGGCCGGATAAGGCACTCGTGCCGCATCCGGCA	ATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCT
GTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP024650.2\|ATV11269.1\|4353958_4354792_+\|sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|234823
CP024650.2\|ATV11264.1\|4348241_4349171_-\|formate-dehydrogenase-accessory-protein-FdhE	unknown	unknown	gnl\|CDD\|179595
CP024650.2\|ATV12174.1\|4347814_4348027_+\|CopG-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|279710
CP024650.2\|ATV11282.1\|4365565_4365673_+\|2-keto-3-deoxygluconate-permease	unknown	unknown	unknown
CP024650.2\|ATV11272.1\|4357683_4358508_-\|rhamnulose-1-phosphate-aldolase	unknown	unknown	gnl\|CDD\|179615
CP024650.2\|ATV11271.1\|4357359_4357674_-\|L-rhamnose-mutarotase	unknown	unknown	gnl\|CDD\|131674
CP024650.2\|ATV11279.1\|4362515_4363454_+\|HTH-type-transcriptional-activator-RhaR	unknown	unknown	gnl\|CDD\|184091
CP024650.2\|ATV11280.1\|4363450_4364485_-\|rhamnose/proton-symporter-RhaT	unknown	unknown	gnl\|CDD\|115061
CP024650.2\|ATV11270.1\|4355924_4357319_+\|porin	unknown	unknown	gnl\|CDD\|374908
CP024650.2\|ATV11265.1\|4349167_4349803_-\|formate-dehydrogenase-cytochrome-b556(fdo)-subunit	unknown	unknown	gnl\|CDD\|182608
CP024650.2\|ATV11276.1\|4358682_4359942_-\|L-rhamnose-isomerase	unknown	unknown	gnl\|CDD\|179217
CP024650.2\|ATV11268.1\|4353768_4354023_+\|hypothetical-protein	unknown	unknown	unknown
CP024650.2\|ATV11267.1\|4350714_4353765_-\|formate-dehydrogenase-N-subunit-alpha	unknown	unknown	gnl\|CDD\|273689
CP024650.2\|ATV11285.1\|4367628_4369002_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236532
CP024650.2\|ATV11284.1\|4366782_4367457_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|183182
CP024650.2\|ATV11281.1\|4364770_4365391_+\|superoxide-dismutase-[Mn]	unknown	unknown	gnl\|CDD\|182843
CP024650.2\|ATV11283.1\|4365650_4366634_+\|2-keto-3-deoxygluconate-permease	unknown	unknown	gnl\|CDD\|273271
CP024650.2\|ATV11278.1\|4361695_4362532_+\|transcriptional-activator-RhaS	unknown	unknown	gnl\|CDD\|184094
CP024650.2\|ATV11277.1\|4359938_4361408_-\|rhamnulokinase	unknown	unknown	gnl\|CDD\|182609
CP024650.2\|ATV11266.1\|4349799_4350702_-\|formate-dehydrogenase-O-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|273705

Protein	Function_ID	Function_description	E-value
CP024650.2\|ATV11269.1\|4353958_4354792_+\|sulfurtransferase-FdhD	gnl\|CDD\|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	1.63704e-160
CP024650.2\|ATV11264.1\|4348241_4349171_-\|formate-dehydrogenase-accessory-protein-FdhE	gnl\|CDD\|179595	PRK03564, PRK03564, formate dehydrogenase accessory protein FdhE; Provisional.	0
CP024650.2\|ATV11276.1\|4358682_4359942_-\|L-rhamnose-isomerase	gnl\|CDD\|179217	PRK01076, PRK01076, L-rhamnose isomerase; Provisional.	0
CP024650.2\|ATV11272.1\|4357683_4358508_-\|rhamnulose-1-phosphate-aldolase	gnl\|CDD\|179615	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional.	0
CP024650.2\|ATV11271.1\|4357359_4357674_-\|L-rhamnose-mutarotase	gnl\|CDD\|131674	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp. [Energy metabolism, Sugars].	3.46584e-64
CP024650.2\|ATV11279.1\|4362515_4363454_+\|HTH-type-transcriptional-activator-RhaR	gnl\|CDD\|184091	PRK13500, PRK13500, HTH-type transcriptional activator RhaR.	0
CP024650.2\|ATV11280.1\|4363450_4364485_-\|rhamnose/proton-symporter-RhaT	gnl\|CDD\|115061	pfam06379, RhaT, L-rhamnose-proton symport protein (RhaT). This family consists of several bacterial L-rhamnose-proton symport protein (RhaT) sequences.	0
CP024650.2\|ATV11270.1\|4355924_4357319_+\|porin	gnl\|CDD\|374908	pfam16966, Porin_8, Porin-like glycoporin RafY. This is a family of Gram-negative Gammaproteobacteria putative raffinose-like porins.	0
CP024650.2\|ATV11265.1\|4349167_4349803_-\|formate-dehydrogenase-cytochrome-b556(fdo)-subunit	gnl\|CDD\|182608	PRK10639, PRK10639, formate dehydrogenase cytochrome b556 subunit.	6.79831e-145
CP024650.2\|ATV12174.1\|4347814_4348027_+\|CopG-family-transcriptional-regulator	gnl\|CDD\|279710	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family. The structure of this protein repressor, which is the shortest reported to date and the first isolated from a plasmid, has a homodimeric ribbon-helix-helix arrangement. The helix-turn-helix-like structure is involved in dimerization and not DNA binding as might have been expected.	1.58147e-06
CP024650.2\|ATV11266.1\|4349799_4350702_-\|formate-dehydrogenase-O-iron-sulfur-subunit	gnl\|CDD\|273705	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing. This model represents the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (TIGR01553) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	1.25079e-161
CP024650.2\|ATV11267.1\|4350714_4353765_-\|formate-dehydrogenase-N-subunit-alpha	gnl\|CDD\|273689	TIGR01553, Formate_dehydrogenase_major_subunit, formate dehydrogenase-N alpha subunit. This model describes a subset of formate dehydrogenase alpha chains found mainly in proteobacteria but also in Aquifex. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase (pfam01568 and pfam00384, respectively). The holo-enzyme also contains beta and gamma subunits of 32 and 20 kDa. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The electrons are utilized mainly in the nitrate respiration by nitrate reductase. In E. coli and Salmonella, there are two forms of the formate dehydrogenase, one induced by nitrate which is strictly anaerobic (fdn), and one incuced during the transition from aerobic to anaerobic growth (fdo). This subunit is one of only three proteins in E. coli which contain selenocysteine. This model is well-defined, with a large, unpopulated trusted/noise gap. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	0
CP024650.2\|ATV11285.1\|4367628_4369002_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	0
CP024650.2\|ATV11284.1\|4366782_4367457_+\|MOSC-domain-containing-protein	gnl\|CDD\|183182	PRK11536, PRK11536, 6-N-hydroxylaminopurine resistance protein; Provisional.	4.41365e-179
CP024650.2\|ATV11283.1\|4365650_4366634_+\|2-keto-3-deoxygluconate-permease	gnl\|CDD\|273271	TIGR00793, 2-keto-3-deoxygluconate_permease, 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	7.59733e-165
CP024650.2\|ATV11278.1\|4361695_4362532_+\|transcriptional-activator-RhaS	gnl\|CDD\|184094	PRK13503, PRK13503, HTH-type transcriptional activator RhaS.	0
CP024650.2\|ATV11277.1\|4359938_4361408_-\|rhamnulokinase	gnl\|CDD\|182609	PRK10640, rhaB, rhamnulokinase; Provisional.	0
CP024650.2\|ATV11281.1\|4364770_4365391_+\|superoxide-dismutase-[Mn]	gnl\|CDD\|182843	PRK10925, PRK10925, superoxide dismutase [Mn].	1.57037e-152

>CP024650.2|ATV11272.1|4357683_4358508_-|rhamnulose-1-phosphate-aldolase
MQNITQSWFVQGMIKATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQQPRYIPLSQPMPLLANTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNEAVPTSELPAHFLSHCERIKATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAQEMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAQILVKVYSMGGMKQTISREELIALGQRFGVTPLASALAL
>CP024650.2|ATV11271.1|4357359_4357674_-|L-rhamnose-mutarotase
MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIYLDKAHNLLFATVEIESEERWNAVASTDVCQRWWKYMTDVMPANADNSPVSSELQEVFYLP
>CP024650.2|ATV11270.1|4355924_4357319_+|porin
MKKSTLSLAIGLLLACSTGMAKTQHLTLEQRMALLEERLEAAEMRAAKAESQVKQLQTQQAAEIREIKAAQGNTPVNGQATAESAKKNSTSPNLLLSGYGDLKIYGDVEFNMDAESNHGLLAMTNADVNSDPTNEQWNLNGRILLGFDGMRKLDNGYFAGFSAQPLGDMHGSVNIDDAVFFFGKENDWKVKVGRFEAYDMFPLNQDTFVEHSGNTANDLYDDGSGYIYMMKEGRGRSNAGGNFLVSKQLDNWYFELNTLLEDGTSLYNDGNYHGRDMEQQKNVAYLRPVIAWSPTEEFTVSAAMEANVVNNAYGYTDSKGNFVDQSDRTGYGMSMTWNGLKTDPENGIVVNLNTAYLDANNEKDFTAGINALWKRFELGYIYAHNKIDEFSGVVCDNDCWIDDEGTYNIHTIHASYQFANVMDMENFNIYLGTYYSILDSDGDKIHGDDSDDRYGARVRFKYFF
>CP024650.2|ATV11269.1|4353958_4354792_+|sulfurtransferase-FdhD
MKKTQQKEIENVTNITGVRQIELWRHDDLQHPRLDEVAEEVPVALVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSSRRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDFQPVGQLTGCTHAAAWMLPSGELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSSRASYEMVQKSAMCGVEILFAVSAATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLSN
>CP024650.2|ATV11268.1|4353768_4354023_+|hypothetical-protein
MLLVSTLSRPIYIRLLRVQGVGVIFLCGRGRKGPELAQFPSIQEGFVTEYHNVGVCVLIWLRESEKNTAKRNRKCDKYHRCSSN
>CP024650.2|ATV11267.1|4350714_4353765_-|formate-dehydrogenase-N-subunit-alpha
MQVSRRQFFKICAGGMAGTTAAALGFAPSVALAETRQYKLLRTRETRNTCTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFIHSESRLKFPEYRAPGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLSTGMLCASASSNETGYLTQKFSRALGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWVDIKNANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTAAVADYYAPIRSGTDIAFLSGVLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYDKSSWTYELDENGFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCEYIAETSAHDKTASFLYALGWTQHSIGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSNIQGLTDLGLLSQSLPGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSMMKAFFGDKATAENSWGFDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNKNKVIGCLSKLKFLVTIDPLNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENGSIVNSGRWLQWHWKGADAPGIALTDGEILSGIFLRLRKMYAEQGGANPDQVLNMTWNYAIPHEPSSEEVAMESNGKALADITDPATGAVIVKKGQQLSSFAQLRDDGTTSCGCWIFAGSWTPEGNQMARRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGNPWDPKRQLLKWDGTKWTGWDIPDYSAAPPGSGVGPFIMQQEGMGRLFALDKMAEGPFPEHYEPFETPLGTNPLHPNVISNPAARIFKDDAEALGKADKFPYVGTTYRLTEHFHYWTKHALLNAILQPEQFVEIGESLANKLGIAQGDTVKVSSNRGYIKAKAVVTKRIRTLKANGKDIDTIGIPIHWGYEGVAKKGFIANTLTPFVGDANTQTPEFKSFLVNVEKV
>CP024650.2|ATV11266.1|4349799_4350702_-|formate-dehydrogenase-O-iron-sulfur-subunit
MAYQSQDIIRRSATNGLTPAPQARDFQEEVAKLIDVTTCIGCKACQVACSEWNDIRDTVGNNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLEWLIRKDGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDNRVYKCTLCVDRVVVGQEPACVKTCPTGAIHFGTKESMKTLASERVAELKTRGYDNAGLYDPAGVGGTHVMYVLHHADKPNLYHGLPENPEISETVKFWKGIWKPLAAVGFAATFAASIFHYVGVGPNRADEEENNLHEEKDEERK
>CP024650.2|ATV11265.1|4349167_4349803_-|formate-dehydrogenase-cytochrome-b556(fdo)-subunit
MKRRDTIVRYTAPERINHWITAFCFILAAVSGLGFLFPSFNWLMQIMGTPQLARILHPFVGVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVGDTGRYNFGQKCVFWAAIIFLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVALIVVIMVHIYAALWVKGTITAMVEGWVTSAWAKKHHPRWYREVRKTTEKKAE
>CP024650.2|ATV11264.1|4348241_4349171_-|formate-dehydrogenase-accessory-protein-FdhE
MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNLYNRRAERLRELAENNPLGDYLRFAALIAHAQEVVLYDHPLEMDLTTRIKEASAQGKPPLDIHVLPRDKHWQKLLMALIAELKPEMSGPALAVIENLEKASTQELEDMASALFASDFSSVSSDKAPFIWAALSLYWAQMANLIPGKARAEYGEQRQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLCETEWHVVRVKCSNCEQSGKLHYWSLDDEQAAIKAESCDDCGTYLKILYQEKEPKVEAVADDLASLVLDARMEQEGYARSSINPFLFPGEGE
>CP024650.2|ATV12174.1|4347814_4348027_+|CopG-family-transcriptional-regulator
MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQRGETVVVDDQCKEHKE
>CP024650.2|ATV11276.1|4358682_4359942_-|L-rhamnose-isomerase
MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDRIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYLGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLENVRTYEKEILSRRG
>CP024650.2|ATV11277.1|4359938_4361408_-|rhamnulokinase
MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWNVDRLESAIRLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAYRDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTIYQLRALTEQQPELIPHIAHALLIPDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAATQALPACRFIINPNDDRFINPDEMCSEIQAACRETAQPIPESDAELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNALLNQLCADACGIRVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHSTRQTKELCA
>CP024650.2|ATV11278.1|4361695_4362532_+|transcriptional-activator-RhaS
MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLLPQEQDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVTDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ
>CP024650.2|ATV11279.1|4362515_4363454_+|HTH-type-transcriptional-activator-RhaR
MVFCNNANLLNVFVRHIANNQLRSLAEVATVAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSASAGQPHWRLGSVGMAQARQVIGQLEHESSQHVSFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD
>CP024650.2|ATV11280.1|4363450_4364485_-|rhamnose/proton-symporter-RhaT
MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIVSWIILPWAISALLLPNFWAYYSSFSLSTLLPVFLFGAMWGIGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTPIINGNFDVLINTEGGRMTLLGVLVALIGVGIVTRAGQLKERKMGIKAEEFNLKKGLVLAVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYVVIMGGGAIINLGFCFIRLAKVKDLSLKADFSLAKPLIIHNVLLSALGGLMWYLQFFFYAWGHARIPAQYDYISWMLHMSFYVLCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVAANIVGIGMAN
>CP024650.2|ATV11281.1|4364770_4365391_+|superoxide-dismutase-[Mn]
MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVQKGDKLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK
>CP024650.2|ATV11282.1|4365565_4365673_+|2-keto-3-deoxygluconate-permease
MFIFVSINTDAPLRNDASALKNMPTGDGNADKTLD
>CP024650.2|ATV11283.1|4365650_4366634_+|2-keto-3-deoxygluconate-permease
MQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIPLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTVK
>CP024650.2|ATV11284.1|4366782_4367457_+|MOSC-domain-containing-protein
MRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTDLGLEGDEQAEKKIHGGPDRALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYIGDIFRWGEALIQVSQPRSPCYKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGLVSADAPLELVSRVSDMTVQEAAAIAWHMPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFSRRLWGK
>CP024650.2|ATV11285.1|4367628_4369002_-|two-component-sensor-histidine-kinase
MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQRQGLMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERSEMQIIRNFIGQADNADHPQKKKYGRVELVGPFSVRDGEDNYQLYLIRPASSSQSDFINLLFDRPLLLLIVTMLVSTPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEFLAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELERIETEAQRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVSPEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIWLPLYKRS

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Crispr_ID: CP024650_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024650_5

4793510-4793649

Orphan

Consensus_repeat	Method
TGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024650_5

>merge|CP024650|5|4793510-4793649|CRISPRCasFinder
TGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACAGCCTTGCCTGATGCGACGCTGTCGCGTCTCATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA

>CP024650|5|4|4793510-4793649|CRISPRCasFinder
TGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA	GCCTTGCCTGATGCGACGCTGTCGCGTCTCATCAGGCCTACGAGTTCAGTGC
TGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP024650.2\|ATV11750.1\|4800430_4801750_-\|gluconate-permease	unknown	unknown	gnl\|CDD\|129873
CP024650.2\|ATV11741.1\|4788179_4788683_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP024650.2\|ATV11752.1\|4802602_4803634_-\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
CP024650.2\|ATV11753.1\|4803850_4804414_+\|gluconokinase	unknown	unknown	gnl\|CDD\|182097
CP024650.2\|ATV11747.1\|4796543_4797626_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
CP024650.2\|ATV11744.1\|4792964_4793408_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
CP024650.2\|ATV11737.1\|4784026_4785247_-\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
CP024650.2\|ATV11740.1\|4787586_4788003_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
CP024650.2\|ATV11754.1\|4804417_4805437_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
CP024650.2\|ATV11735.1\|4782056_4783061_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179366
CP024650.2\|ATV11749.1\|4799366_4800365_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380489
CP024650.2\|ATV11751.1\|4801814_4802579_-\|3-oxoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|181225
CP024650.2\|ATV11748.1\|4797786_4799289_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
CP024650.2\|ATV11739.1\|4786420_4787425_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
CP024650.2\|ATV11736.1\|4783071_4784016_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183466
CP024650.2\|ATV11742.1\|4788875_4790063_+\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
CP024650.2\|ATV11745.1\|4793665_4795177_-\|cytosol-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
CP024650.2\|ATV11743.1\|4790109_4792965_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
CP024650.2\|ATV11746.1\|4795443_4796544_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
CP024650.2\|ATV11738.1\|4785924_4786377_+\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345

Protein	Function_ID	Function_description	E-value
CP024650.2\|ATV11750.1\|4800430_4801750_-\|gluconate-permease	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
CP024650.2\|ATV11741.1\|4788179_4788683_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.51706e-18
CP024650.2\|ATV11752.1\|4802602_4803634_-\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
CP024650.2\|ATV11753.1\|4803850_4804414_+\|gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	2.59086e-125
CP024650.2\|ATV11747.1\|4796543_4797626_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
CP024650.2\|ATV11744.1\|4792964_4793408_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
CP024650.2\|ATV11737.1\|4784026_4785247_-\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
CP024650.2\|ATV11740.1\|4787586_4788003_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	8.18116e-69
CP024650.2\|ATV11754.1\|4804417_4805437_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	5.98969e-169
CP024650.2\|ATV11735.1\|4782056_4783061_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179366	PRK02102, PRK02102, ornithine carbamoyltransferase; Validated.	0
CP024650.2\|ATV11749.1\|4799366_4800365_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	3.35057e-107
CP024650.2\|ATV11751.1\|4801814_4802579_-\|3-oxoacyl-ACP-reductase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
CP024650.2\|ATV11748.1\|4797786_4799289_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
CP024650.2\|ATV11739.1\|4786420_4787425_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
CP024650.2\|ATV11736.1\|4783071_4784016_-\|carbamate-kinase	gnl\|CDD\|183466	PRK12354, PRK12354, carbamate kinase; Reviewed.	0
CP024650.2\|ATV11742.1\|4788875_4790063_+\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	6.82189e-106
CP024650.2\|ATV11745.1\|4793665_4795177_-\|cytosol-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
CP024650.2\|ATV11743.1\|4790109_4792965_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
CP024650.2\|ATV11746.1\|4795443_4796544_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
CP024650.2\|ATV11738.1\|4785924_4786377_+\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	1.2775e-64

>CP024650.2|ATV11744.1|4792964_4793408_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>CP024650.2|ATV11743.1|4790109_4792965_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIVDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>CP024650.2|ATV11742.1|4788875_4790063_+|DUF898-domain-containing-protein
MNDVNIGKDNSRHSFVFTGKGGEYFLICLVSFLLTIITLGIYGPWALIKCRRYIYQHVTLKGQPFSYKGTGGAIFVSMLLIVVVYLLSISCFAGQHFALGLFLFALLICGIPCMAVKSLQYQANMTSLNDIRFGFNCSMMRAWWVMLGLPVLLALVFWFALYLIAQVTTSIGGLFFNLVALSLLSAIGLGVVHGITYSKWMPLLGNNATFGIHKFSIQVNVKECIKGCMLAILTMVPFIIVIGIMIAPVFQQLMMMTMLGRSDAGSEFVLQYYPQIMASYFLYFVAILVFASYLYVTLRNLFLNNLTLANGTIRFHSSVTAIGMLLRMLAVLMGSSITCGLAYPWLKMWMVSWIANNTHVQGDLDSLELTNDDKPQDSGSLMWISRGIMPYVPFI
>CP024650.2|ATV11741.1|4788179_4788683_-|N-acetyltransferase
MNVVASPALRLRKLTVADNPAIAHVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLRKL
>CP024650.2|ATV11740.1|4787586_4788003_+|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGIRH
>CP024650.2|ATV11739.1|4786420_4787425_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEARLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVAECSALAQKHGGKITLTEDIASGVKGADFIYTDVWVSMGEPKEKWAERIALLRDYQVNSKMMALTGNSQVKFLHCLPAFHDEQTTLGKKMAAEFGLYGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLAK
>CP024650.2|ATV11738.1|4785924_4786377_+|YhcH/YjgK/YiaL-family-protein
MIVGNIHHLQSWLPEELREAIEYIKSHVSDETAKGKHAIDGDRLFYLISEDTTEPGELRRAEYHARYLDIQIVLKGQEGMTFSTQPAGVPETDWLADKDIAFIGQGIDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKLLKA
>CP024650.2|ATV11737.1|4784026_4785247_-|arginine-deiminase
MEKHYVGSEIGQLCSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDIFANTLRQQGIEVLLLTDLLTQTLDIPEAKSWLLETQISDYRLGPTFATDVRTWLAEMSHRDLARHLSGGLTYSEIPASIKNMVVDTHDINDFIMKPLPNHLFTRDTSCWIYNGVSINPMAKPARQRETNNLRAIYRWHPQFAGGEFIKYFGDENINYDHATLEGGDVLVIGRGAVLIGMSERTTPQGVEFLAQALFKHRQAERVIAVELPKHRYCMHLDTVMTHIDIDTFSVYPEVVRPDVNCWTLTPDGHGGLKRTQESTLLHAIEKALGIDQVRLITTGGDAFEAEREQWNDANNVLTLRPGVVVGYERNIWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLHRDGI
>CP024650.2|ATV11736.1|4783071_4784016_-|carbamate-kinase
MENKPTLVIALGGNALLKRGEPLEAEIQRKNIDLAAKTIAQLTQHWRVVLVHGNGPQVGLLALQNSAYAHVAPYPLDILGAESQGMIGYMLQQALKNQLPQREISVLLTQVEVDANDPAFSNPTKYIGPIYDHAQTQVLQAEKGWVFKADGHSFRRVVPSPQPKRIVERDAIQTLIAHDHLVICNGGGGVPVVEKADGYHGIEAVIDKDLSAALLASQIHADALLILTDADAVYLDWGKPTQRPLAQVTPELLNEMQFDAGSMGPKVTACAKFVSQCRGIAGIGSLADGPEILAGDKGTLIRLDTPITTLDPFL
>CP024650.2|ATV11735.1|4782056_4783061_-|ornithine-carbamoyltransferase
MATSLKNRNFLKLLDYTPAEIQYLIDLAINLKAAKKSGNEKQTLVGKNIALIFEKSSTRTRCAFEVAAFDQGAQVTYIGPSGSQIGHKESMKDTARVLGRMYDGIEYRGYGQNIVEELGEFAGVPVWNGLTNEFHPTQILADLMTMLEHAPGKTLPELSFAYLGDARNNMGNSLMVGAAKMGMDIRLVAPKSFWPDEALVTQCREIASVTGARITLTEDVEEGVYDVDFLYTDVWVSMGEPKEAWAERVSLMAPYQINQQVITATRNPEVKFMHCLPAFHNEHTTVGREIEMAYGLKGLEVTEEVFESAHSIVFDEAENRMHTIKAVMVATLGD
>CP024650.2|ATV11745.1|4793665_4795177_-|cytosol-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>CP024650.2|ATV11746.1|4795443_4796544_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>CP024650.2|ATV11747.1|4796543_4797626_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>CP024650.2|ATV11748.1|4797786_4799289_-|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPRLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDDVDRESAYEMLQKGVQASTEQQNNPAVKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>CP024650.2|ATV11749.1|4799366_4800365_-|LacI-family-DNA-binding-transcriptional-regulator
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSVHNYQTIIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERKLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRTAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>CP024650.2|ATV11750.1|4800430_4801750_-|gluconate-permease
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGQYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>CP024650.2|ATV11751.1|4801814_4802579_-|3-oxoacyl-ACP-reductase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVKKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>CP024650.2|ATV11752.1|4802602_4803634_-|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSKLHEGQTVAINPSKPCGHCKYCIEHNENQCTEMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLKGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>CP024650.2|ATV11753.1|4803850_4804414_+|gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQDDEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>CP024650.2|ATV11754.1|4804417_4805437_-|NAD(P)-dependent-alcohol-dehydrogenase
MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKTLAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLPVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	271-327	5	0.912
CP024650_1	1.2\|938571\|32\|CP024650\|CRISPRCasFinder	938571-938602	32	NC_015163	Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence	83332-83363	8	0.75
CP024650_3	3.2\|4298151\|56\|CP024650\|PILER-CR	4298151-4298206	56	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	13988-14043	9	0.839
CP024650_3	3.2\|4298151\|56\|CP024650\|PILER-CR	4298151-4298206	56	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87116-87171	11	0.804
CP024650_5	5.1\|4793554\|52\|CP024650\|CRISPRCasFinder	4793554-4793605	52	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12113-12164	11	0.788
CP024650_5	5.1\|4793554\|52\|CP024650\|CRISPRCasFinder	4793554-4793605	52	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	272-323	11	0.788
CP024650_5	5.1\|4793554\|52\|CP024650\|CRISPRCasFinder	4793554-4793605	52	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31252-31303	11	0.788
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30155-30211	12	0.789
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	43-99	13	0.772
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	42-98	13	0.772
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18328-18384	13	0.772
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	42-98	13	0.772
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	42-98	13	0.772
CP024650_5	5.1\|4793554\|52\|CP024650\|CRISPRCasFinder	4793554-4793605	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208982-209033	13	0.75
CP024650_5	5.1\|4793554\|52\|CP024650\|CRISPRCasFinder	4793554-4793605	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219476-219527	13	0.75
CP024650_5	5.1\|4793554\|52\|CP024650\|CRISPRCasFinder	4793554-4793605	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210310-210361	13	0.75
CP024650_5	5.1\|4793554\|52\|CP024650\|CRISPRCasFinder	4793554-4793605	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191265-191316	13	0.75
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87115-87171	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229227-229283	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229328-229384	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229429-229485	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4114-4170	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239721-239777	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239822-239878	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239923-239979	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4113-4169	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230633-230689	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230734-230790	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230835-230891	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4113-4169	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211603-211659	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211704-211760	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211805-211861	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4113-4169	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7392-7448	14	0.754
CP024650_4	4.1\|4358587\|57\|CP024650\|CRISPRCasFinder	4358587-4358643	57	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84216-84272	14	0.754
CP024650_3	3.1\|4298052\|63\|CP024650\|PILER-CR	4298052-4298114	63	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87115-87177	15	0.762

1. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 5, identity: 0.912

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctac-aactattgccgacct	CRISPR spacer
atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaaccgttaccgact-	Protospacer
****************************************** ***..**.*****.

2. spacer 1.2|938571|32|CP024650|CRISPRCasFinder matches to NC_015163 (Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence) position: , mismatch: 8, identity: 0.75

ttgccgcggatcctgtctgccaataatgacaa	CRISPR spacer
ctggacggcatcctgtctgccaattttgacaa	Protospacer
.**    * ***************  ******

3. spacer 3.2|4298151|56|CP024650|PILER-CR matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.839

tacag-tgcccgatgcgacgctgccgcgtcttatcgggcctacaaa-agttctgaacc	CRISPR spacer
-acggatgcccgatgcgacgctggcgcgtcttatcgggcctacaaacggccccgaat-	Protospacer
 **.* ***************** ********************** .*..*.***.

4. spacer 3.2|4298151|56|CP024650|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.804

tacagtgcccgatgcgacgctgccgcgtcttatcgggcctacaaaagttctgaacc----	CRISPR spacer
cacgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaaa----tcaatcgctt	Protospacer
.**..****.************************.***********    * **.*

5. spacer 5.1|4793554|52|CP024650|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc	CRISPR spacer
tcggtgcctgatgcgacgctggcgcgtcttatcaggcctacgagtcgcccgt	Protospacer
 *  ***************** *******.***************.   .*.

6. spacer 5.1|4793554|52|CP024650|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc-	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaa-ccgttacc	Protospacer
 *  *************************.***********.*. .*. *.*

7. spacer 5.1|4793554|52|CP024650|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc--	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacag--ccgttgcca	Protospacer
 *  *************************.***********..  .*. ***

8. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 12, identity: 0.789

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa-ctattgccgacct	CRISPR spacer
tctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaatctgcacccgaac-	Protospacer
 ...****************** ************ ******** **..  **** *

9. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***

10. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***

11. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***

12. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***

13. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***

14. spacer 5.1|4793554|52|CP024650|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.

15. spacer 5.1|4793554|52|CP024650|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.

16. spacer 5.1|4793554|52|CP024650|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.

17. spacer 5.1|4793554|52|CP024650|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.

18. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
cacgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaaatcaatcgcttt	Protospacer
  *.******************.*********************   . ..** ..*

19. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

20. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

21. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

22. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**

23. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

24. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

25. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

26. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**

27. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

28. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

29. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

30. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**

31. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

32. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

33. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

34. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**

35. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctac--aactattgccgacct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaaactgcactcaac--	Protospacer
 . .****************** ************ ******  ****..  .*.**

36. spacer 4.1|4358587|57|CP024650|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctac--aactattgccgacct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaaactgcactcaac--	Protospacer
 . .****************** ************ ******  ****..  .*.**

37. spacer 3.1|4298052|63|CP024650|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 15, identity: 0.762

ttggtgcacgatgcctgatgcgacgctggcgcgtcttatcaggcctacattggtgccgga	CRISPR spacer
tcggtgcacgatgcctgatgcgacgctgccgcgtcttatcaggcctaca--------aaa	Protospacer
*.************************** ********************        ..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

127927 : 190399

Erysipelothrix_phage(11.11%)

tRNA,transposase,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATV07321.1\|127927_128212_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
ATV07322.1\|128379_128619_+	hypothetical protein	NA	NA	NA	NA
ATV07323.1\|128619_128910_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
ATV07324.1\|129076_129265_+	HNH endonuclease	NA	NA	NA	NA
ATV07325.1\|129318_129609_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
ATV07326.1\|130064_130829_+	pyruvate dehydrogenase complex repressor	NA	NA	NA	NA
ATV07327.1\|130825_131008_-	hypothetical protein	NA	NA	NA	NA
ATV07328.1\|130989_133653_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
ATV07329.1\|133667_135560_+	pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA
ATV12013.1\|135767_137192_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	4.2e-42	27.8
ATV07330.1\|137433_139191_-	translation initiation factor IF-2	NA	NA	NA	NA
ATV07331.1\|139447_139564_+	aconitate hydratase	NA	NA	NA	NA
ATV07332.1\|139544_142142_+	aconitate hydratase B	NA	NA	NA	NA
ATV07333.1\|142316_142679_+	UPF0231 family protein	NA	NA	NA	NA
ATV07334.1\|142716_143511_-	S-adenosylmethionine decarboxylase proenzyme	NA	NA	NA	NA
ATV07335.1\|143526_144393_-	polyamine aminopropyltransferase	NA	NA	NA	NA
ATV07336.1\|144498_144846_-	hypothetical protein	NA	NA	NA	NA
ATV07337.1\|145011_146562_+	multicopper oxidase CueO	NA	NA	NA	NA
ATV07342.1\|146818_149209_-	glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase	NA	NA	NA	NA
ATV07343.1\|149414_149951_+	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	5.1e-17	33.1
ATV07344.1\|149991_150654_-	carbonate dehydratase	NA	NA	NA	NA
ATV07345.1\|150762_151689_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-21	34.0
ATV07346.1\|151685_152456_+	inner membrane transport permease YadH	NA	NA	NA	NA
ATV07347.1\|152560_153001_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
ATV07348.1\|153064_154294_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
ATV07349.1\|154297_154678_-	aspartate 1-decarboxylase	NA	NA	NA	NA
ATV07350.1\|154627_154831_+	hypothetical protein	NA	NA	NA	NA
ATV07351.1\|154951_155884_+\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	6.5e-60	48.4
ATV07352.1\|155952_156156_+\|transposase	transposase	NA	NA	NA	NA
ATV07353.1\|156237_157089_-	pantoate--beta-alanine ligase	NA	NA	NA	NA
ATV07354.1\|157100_157895_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
ATV07355.1\|158006_159293_-	adhesin	NA	NA	NA	NA
ATV07356.1\|159318_159915_-	fimbrial protein StaF	NA	NA	NA	NA
ATV07357.1\|159941_160550_-	fimbrial protein StaE	NA	NA	NA	NA
ATV07358.1\|160561_161128_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA
ATV07359.1\|161144_163733_-	outer membrane usher protein	NA	NA	NA	NA
ATV07360.1\|163767_164508_-	fimbrial chaperone	NA	NA	NA	NA
ATV07361.1\|164616_165207_-	fimbrial protein	NA	NA	NA	NA
ATV07362.1\|165568_166048_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
ATV07363.1\|166044_167463_-	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	3.2e-26	37.9
ATV07364.1\|167501_168428_-\|tRNA	glutamyl-Q tRNA(Asp) synthetase	NA	NA	NA	NA
ATV07365.1\|168464_168920_-	RNA polymerase-binding transcription factor DksA	NA	NA	NA	NA
ATV07366.1\|169097_169802_-	DNA/RNA nuclease SfsA	NA	NA	NA	NA
ATV07367.1\|169816_170347_-	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
ATV07368.1\|170420_172850_+	ATP-dependent helicase HrpB	A0A0G2Y9F4	Acanthamoeba_polyphaga_mimivirus	2.1e-41	28.8
ATV07369.1\|172943_175478_+	penicillin-binding protein 1B	NA	NA	NA	NA
ATV07370.1\|175697_177941_+	ferrichrome porin FhuA	NA	NA	NA	NA
ATV07371.1\|177991_178789_+	iron(3+)-hydroxamate import ATP-binding protein FhuC	G9BWD6	Planktothrix_phage	6.0e-14	26.9
ATV07372.1\|178788_179679_+	iron-hydroxamate transporter substrate-binding subunit	NA	NA	NA	NA
ATV07373.1\|179675_181658_+	Fe(3+)-hydroxamate ABC transporter permease FhuB	NA	NA	NA	NA
ATV07374.1\|181692_182973_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
ATV07375.1\|183197_184619_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA
ATV07376.1\|184700_185045_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	4.5e-27	51.4
ATV07377.1\|185091_185715_-	hypothetical protein	NA	NA	NA	NA
ATV07378.1\|185752_186553_-	vitamin B12 ABC transporter substrate-binding protein BtuF	NA	NA	NA	NA
ATV07379.1\|186545_187244_-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA
ATV07380.1\|187327_188845_+	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
ATV07381.1\|188974_190399_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	2.5e-26	28.8

DBSCAN-SWA_2

256757 : 307032

Streptococcus_phage(22.22%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATV07438.1\|256757_258104_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
ATV07439.1\|258106_258631_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
ATV12018.1\|258627_259908_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
ATV07440.1\|259924_260974_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
ATV07441.1\|260937_262797_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
ATV07442.1\|262784_263210_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
ATV07443.1\|263214_264699_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
ATV07444.1\|264721_265225_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
ATV07445.1\|265930_266449_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
ATV07446.1\|266669_268652_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.6e-23	25.3
ATV07447.1\|268758_269805_+	DUF2169 domain-containing protein	NA	NA	NA	NA
ATV07448.1\|269797_271237_+	DUF4150 domain-containing protein	NA	NA	NA	NA
ATV07449.1\|271211_271502_+	hypothetical protein	NA	NA	NA	NA
ATV07450.1\|272752_273256_+	hypothetical protein	NA	NA	NA	NA
ATV07451.1\|273325_273838_+	integrating conjugative element protein	NA	NA	NA	NA
ATV07452.1\|274108_274879_-	amidohydrolase	NA	NA	NA	NA
ATV07453.1\|275032_275506_+	C-lysozyme inhibitor	NA	NA	NA	NA
ATV07454.1\|275548_277993_-	crotonobetainyl-CoA dehydrogenase	NA	NA	NA	NA
ATV07455.1\|278232_278811_+	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
ATV07456.1\|279015_279783_+	class II glutamine amidotransferase	NA	NA	NA	NA
ATV07457.1\|279753_280494_-	transpeptidase	NA	NA	NA	NA
ATV07458.1\|281514_283254_-	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
ATV12019.1\|283213_283984_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
ATV07459.1\|284054_285110_+	DNA polymerase IV	NA	NA	NA	NA
ATV07460.1\|285161_285455_+	antitoxin YafN	NA	NA	NA	NA
ATV07461.1\|285457_285856_+	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA
ATV07462.1\|285865_286318_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
ATV07463.1\|286495_287647_+	RNA ligase RtcB family protein	A0A222ZMP7	Mycobacterium_phage	7.8e-31	31.8
ATV07464.1\|287643_288258_+	peptide chain release factor H	NA	NA	NA	NA
ATV07465.1\|288314_289772_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA
ATV07466.1\|290032_290491_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
ATV07467.1\|290582_291827_+	esterase	NA	NA	NA	NA
ATV07468.1\|291884_292286_+	sigma factor-binding protein Crl	NA	NA	NA	NA
ATV07469.1\|292324_293380_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.0e-117	60.6
ATV07470.1\|293668_294772_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
ATV07471.1\|294783_296037_+	gamma-glutamyl-phosphate reductase	A0A1X9I5D4	Streptococcus_phage	5.8e-96	47.5
ATV07472.1\|296537_297134_+	hypothetical protein	A0A1B0VBK8	Salmonella_phage	1.7e-98	88.4
ATV12020.2\|297220_298858_-	hypothetical protein	NA	NA	NA	NA
ATV07473.1\|299549_299777_+	AlpA family phage regulatory protein	NA	NA	NA	NA
ATV07474.1\|299882_300110_+	DUF3987 domain-containing protein	NA	NA	NA	NA
ATV07475.1\|300358_301792_+	DUF3987 domain-containing protein	NA	NA	NA	NA
ATV07476.1\|302761_303325_+	inovirus Gp2 family protein	NA	NA	NA	NA
AUM61469.1\|303532_305064_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.8e-44	35.0
ATV12021.1\|305858_305996_+	chemotaxis protein	NA	NA	NA	NA
AUM61470.1\|306009_307032_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	6.0e-200	99.4

DBSCAN-SWA_3

922245 : 929968

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATV08051.1\|922245_924192_+	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	1.1e-37	40.1
ATV08052.1\|924264_924489_-	cold-shock protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
ATV08053.1\|924893_926132_+	DUF4102 domain-containing protein	A0A2H4JB45	uncultured_Caudovirales_phage	2.0e-125	52.2
ATV08054.1\|926541_926751_+	AlpA family phage regulatory protein	A0A2H4JB58	uncultured_Caudovirales_phage	2.2e-16	67.9
ATV08055.1\|926889_927069_-	hypothetical protein	A0A2H4JB52	uncultured_Caudovirales_phage	1.2e-10	58.6
ATV08056.1\|927202_927400_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
ATV08057.1\|927392_927704_+	hypothetical protein	NA	NA	NA	NA
ATV08058.1\|927696_927924_+	hypothetical protein	NA	NA	NA	NA
ATV08059.1\|927929_928217_+	DUF4222 domain-containing protein	NA	NA	NA	NA
ATV08060.1\|928213_929968_+	DNA primase	Q7M2A8	Enterobacteria_phage	2.2e-93	40.8

DBSCAN-SWA_4

1183894 : 1249490

Enterobacteria_phage(53.57%)

terminase,capsid,integrase,tRNA,portal,lysis,head,tail

attL 1176529:1176544|attR 1236174:1236189

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1176529:1176544	attL	NA	NA	NA	NA
ATV08300.1\|1183894_1185001_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
ATV08301.1\|1185054_1185516_-	NUDIX hydrolase	NA	NA	NA	NA
ATV08302.1\|1185525_1186179_-	23S rRNA pseudouridine synthase E	NA	NA	NA	NA
ATV08303.1\|1186350_1187601_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
ATV08304.1\|1187714_1188857_-\|integrase	integrase	Q77Z02	Phage_21	3.1e-205	99.4
ATV08305.1\|1188846_1189083_-	excisionase	NA	NA	NA	NA
ATV08306.1\|1189222_1189462_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	3.9e-38	94.9
ATV08307.1\|1189509_1189728_-	conjugal transfer protein TraR	M1FQT7	Enterobacteria_phage	1.8e-34	95.8
ATV08308.1\|1189826_1190108_-	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	1.2e-46	97.8
ATV08309.1\|1190118_1190310_-	hypothetical protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
ATV08310.1\|1190282_1190465_-	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	1.3e-28	98.3
ATV08311.1\|1190461_1191142_-	exonuclease	B6DZ61	Enterobacteria_phage	5.1e-131	98.2
ATV08312.1\|1191138_1191924_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
ATV08313.1\|1191929_1192226_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	3.6e-49	99.0
ATV08314.1\|1192300_1192507_-	cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
ATV08315.1\|1192982_1193360_-	hypothetical protein	Q6SE87	Lactobacillus_prophage	1.3e-30	49.2
ATV08316.1\|1193337_1194399_-	N-acetyltransferase	Q6SE88	Lactobacillus_prophage	2.9e-64	42.0
ATV12054.1\|1194479_1195172_-	transcriptional repressor LexA	Q76H56	Enterobacteria_phage	1.5e-109	86.1
ATV08317.1\|1195282_1195510_+	transcriptional regulator	Q76H55	Enterobacteria_phage	3.8e-22	69.0
ATV08318.1\|1195540_1196080_+	regulator	M9NZI6	Enterobacteria_phage	8.9e-62	66.7
ATV08319.1\|1196076_1197096_+	Replication protein O	A0A0M5M7Y1	Salmonella_phage	6.1e-112	64.7
ATV08320.1\|1197092_1197806_+	phage replication protein	G8C7U6	Escherichia_phage	9.8e-109	83.4
ATV08321.1\|1197884_1198313_-	hypothetical protein	NA	NA	NA	NA
ATV08322.1\|1198309_1198687_-	hypothetical protein	NA	NA	NA	NA
ATV08323.1\|1198954_1199410_+	hypothetical protein	I6PD71	Cronobacter_phage	7.0e-60	66.2
ATV08324.1\|1199409_1199580_+	hypothetical protein	K7P7K0	Enterobacteria_phage	2.0e-12	67.9
ATV08325.1\|1199572_1199863_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	9.6e-47	92.7
ATV08326.1\|1199859_1200222_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
ATV08327.1\|1200218_1200359_+	YlcG family protein	K7PHH3	Enterobacteria_phage	1.1e-08	69.8
ATV08328.1\|1200444_1200828_+	antitermination protein	A0A088CD47	Shigella_phage	1.5e-55	83.3
ATV08329.1\|1201016_1202099_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.6e-166	80.1
ATV08330.1\|1202687_1202903_+\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	9.0e-34	100.0
ATV08331.1\|1202902_1203400_+	lysozyme	M1FJA0	Enterobacteria_phage	2.1e-89	96.4
ATV08332.1\|1203396_1203858_+\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	1.2e-75	98.7
ATV08333.1\|1203889_1204183_-	lipoprotein bor	K7PL54	Enterobacteria_phage	7.0e-45	92.8
ATV08334.1\|1204609_1204990_+	hypothetical protein	H6WZK5	Escherichia_phage	2.6e-39	72.2
ATV08335.1\|1205112_1205466_-	hypothetical protein	NA	NA	NA	NA
ATV12055.1\|1205353_1205674_-	hypothetical protein	NA	NA	NA	NA
ATV08337.1\|1205942_1206491_+\|terminase	phage terminase small subunit	A0A0U2S671	Escherichia_phage	1.0e-57	84.2
ATV08338.1\|1206462_1208391_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	3.3e-260	66.7
ATV08339.1\|1208374_1208581_+\|head	phage head-stabilizing protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
ATV08340.1\|1208577_1210170_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	6.5e-185	61.1
ATV08341.1\|1210159_1211665_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	1.3e-99	53.2
ATV08342.1\|1211701_1212049_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.6e-22	58.1
ATV08343.1\|1212106_1213135_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	2.7e-115	61.6
ATV08344.1\|1213138_1213561_+	hypothetical protein	NA	NA	NA	NA
ATV08345.1\|1213553_1213907_+\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	3.4e-38	65.0
ATV08346.1\|1213918_1214497_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-79	92.2
ATV08347.1\|1214493_1214889_+\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	5.0e-70	98.5
ATV12056.1\|1214896_1215637_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	6.1e-130	98.0
ATV08348.1\|1215652_1216075_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-70	95.7
ATV08349.1\|1216056_1216491_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.5e-63	97.5
ATV08350.1\|1216483_1219045_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	90.0
ATV08351.1\|1219041_1219371_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	2.8e-58	98.2
ATV08352.1\|1219370_1220069_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	6.2e-132	98.7
ATV08353.1\|1220073_1220817_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	7.7e-149	97.2
ATV08354.1\|1220714_1221386_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	8.1e-105	100.0
ATV08355.1\|1221446_1224845_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	90.8
ATV08356.1\|1224911_1225511_+	Ail/Lom family protein	A0A0P0ZCF6	Stx2-converting_phage	2.3e-111	99.5
ATV08357.1\|1225575_1228416_+	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	2.5e-54	92.3
ATV08358.1\|1228415_1228997_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.6e-101	93.8
ATV08359.1\|1229777_1230635_-	metal ABC transporter permease	NA	NA	NA	NA
ATV08360.1\|1230631_1231489_-	metal ABC transporter permease	NA	NA	NA	NA
ATV08361.1\|1231485_1232313_-	manganese/iron transporter ATP-binding protein	M1HV27	Acanthocystis_turfacea_Chlorella_virus	1.5e-07	28.0
ATV08362.1\|1232312_1233227_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
ATV08363.1\|1234154_1234307_+	isocitrate dehydrogenase	Q77Z09	Phage_21	1.6e-21	100.0
ATV08364.1\|1234568_1234973_-	DUF1398 domain-containing protein	NA	NA	NA	NA
ATV08365.1\|1235193_1235925_-	helix-turn-helix-type transcriptional regulator	Q9EYF2	Enterobacteria_phage	1.6e-53	51.0
ATV08366.1\|1236129_1237341_-	diguanylate phosphodiesterase	NA	NA	NA	NA
1236174:1236189	attR	NA	NA	NA	NA
ATV08367.1\|1237654_1237891_+	two-component-system connector protein YcgZ	NA	NA	NA	NA
ATV08368.1\|1237933_1238206_+	two-component-system connector protein YmgA	NA	NA	NA	NA
ATV08369.1\|1238234_1238501_+	regulatory protein AriR	NA	NA	NA	NA
ATV08370.1\|1238613_1238862_+	hypothetical protein	NA	NA	NA	NA
ATV08371.1\|1240184_1240403_+	hypothetical protein	NA	NA	NA	NA
ATV08372.1\|1240800_1240980_+	ATPase	NA	NA	NA	NA
AUD55437.1\|1241269_1241647_+	porin	NA	NA	NA	NA
ATV08373.1\|1241663_1242320_+	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	3.0e-35	29.1
ATV08374.1\|1242377_1242707_-	hypothetical protein	NA	NA	NA	NA
ATV08375.1\|1242716_1243061_-	glycine zipper family protein	NA	NA	NA	NA
ATV08376.1\|1243062_1243236_-	hypothetical protein	NA	NA	NA	NA
ATV08377.1\|1243336_1243522_+	hypothetical protein	NA	NA	NA	NA
ATV08378.1\|1244025_1244211_+	hypothetical protein	NA	NA	NA	NA
ATV08379.1\|1244352_1244619_-	cell division topological specificity factor	NA	NA	NA	NA
ATV08380.1\|1244622_1245435_-	septum site-determining protein MinD	NA	NA	NA	NA
ATV08381.1\|1245458_1246154_-	septum site-determining protein MinC	NA	NA	NA	NA
ATV08382.1\|1246293_1246521_+	hypothetical protein	NA	NA	NA	NA
ATV08383.1\|1246673_1247042_+	hypothetical protein	NA	NA	NA	NA
ATV08384.1\|1247144_1247546_-	inhibitor of g-type lysozyme	NA	NA	NA	NA
ATV08385.1\|1247787_1248081_+	hypothetical protein	NA	NA	NA	NA
ATV08386.1\|1248152_1248812_+	isomerase/hydrolase	NA	NA	NA	NA
ATV08387.1\|1248888_1249350_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
AUM61477.1\|1249346_1249490_+\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_5

2698142 : 2774295

Salmonella_phage(47.27%)

terminase,holin,tRNA,head,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATV09695.1\|2698142_2698883_-\|tRNA	tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ	NA	NA	NA	NA
ATV09696.1\|2699001_2699805_+	inositol monophosphatase	NA	NA	NA	NA
ATV09697.1\|2699949_2700804_+	alpha/beta hydrolase	NA	NA	NA	NA
ATV09698.1\|2700994_2702275_+	PRD domain-containing protein	NA	NA	NA	NA
ATV09699.1\|2702266_2703406_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
ATV09700.1\|2703774_2704197_+	hypothetical protein	NA	NA	NA	NA
AUM61484.1\|2704271_2705619_+\|transposase	IS3-like element IS1397 family transposase	A0A1B1P773	Bacillus_phage	1.3e-74	52.4
ATV09703.1\|2705792_2706665_-	aldose 1-epimerase	NA	NA	NA	NA
ATV12110.1\|2706676_2707738_-	alcohol dehydrogenase	NA	NA	NA	NA
ATV09704.1\|2707803_2708802_-	ABC transporter permease	NA	NA	NA	NA
ATV09705.1\|2708826_2710338_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.3e-13	27.3
ATV09706.1\|2710360_2711344_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
ATV09707.1\|2711440_2714722_-	DUF5107 domain-containing protein	NA	NA	NA	NA
ATV09708.1\|2714839_2716033_+	ROK family protein	NA	NA	NA	NA
ATV09709.1\|2716096_2717350_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	7.8e-101	52.7
ATV09710.1\|2717678_2718869_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
ATV09711.1\|2718913_2719252_-	nitrogen regulatory protein P-II 1	NA	NA	NA	NA
ATV09712.1\|2719312_2720647_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	3.9e-10	37.3
ATV09713.1\|2720636_2721350_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
ATV09714.1\|2721514_2722942_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	3.0e-16	24.9
ATV09715.1\|2723517_2727405_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	2.2e-130	59.4
ATV09716.1\|2727419_2727569_-	phosphoribosylglycinamide synthetase	NA	NA	NA	NA
ATV09717.1\|2727662_2729219_+	lytic transglycosylase F	NA	NA	NA	NA
ATV09718.1\|2729215_2729752_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
ATV09719.1\|2729776_2730412_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
ATV09720.1\|2730620_2731469_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
ATV09721.1\|2731781_2732048_+	hypothetical protein	A0A0M3ULK3	Salmonella_phage	1.7e-34	80.7
ATV09722.1\|2732106_2732754_+	hypothetical protein	NA	NA	NA	NA
ATV09723.1\|2732834_2733389_-	recombinase family protein	A0A1S6L009	Salmonella_phage	3.7e-87	87.3
ATV09724.1\|2733418_2733913_+\|tail	phage tail protein	K7PH60	Enterobacterial_phage	1.1e-79	92.8
ATV09725.1\|2733912_2734506_+\|tail	phage tail protein	Q9MCR5	Enterobacteria_phage	4.5e-59	64.9
ATV09726.1\|2734477_2734918_-\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	5.6e-54	69.7
ATV09727.1\|2734944_2735634_-	hypothetical protein	A0A0M3ULD8	Salmonella_phage	3.7e-28	70.0
ATV09728.1\|2735633_2736314_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	3.4e-103	78.8
ATV09729.1\|2736310_2737510_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	1.7e-185	83.9
ATV09730.1\|2737509_2737863_-	hypothetical protein	A0A0M4R339	Salmonella_phage	1.5e-54	88.9
ATV09731.1\|2737862_2738615_-	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	2.5e-86	65.9
ATV09732.1\|2738674_2739070_-	hypothetical protein	NA	NA	NA	NA
ATV09733.1\|2739056_2739830_-	hypothetical protein	NA	NA	NA	NA
ATV09734.1\|2739925_2740258_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.1e-22	70.5
ATV09735.1\|2740257_2741322_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	3.2e-156	81.1
ATV09736.1\|2741324_2741627_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	6.3e-49	91.0
ATV09737.1\|2741626_2742214_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.4e-83	88.0
ATV09738.1\|2742213_2744199_-	lytic transglycosylase catalytic	A0A0M4REK7	Salmonella_phage	3.8e-174	53.3
ATV09739.1\|2744188_2744365_-	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	1.6e-12	70.0
ATV09740.1\|2744376_2744829_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	6.1e-56	72.7
ATV09741.1\|2744832_2745273_-	DUF3277 domain-containing protein	A0A2H4J619	uncultured_Caudovirales_phage	7.0e-57	75.3
ATV09742.1\|2745283_2746429_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	5.2e-160	73.2
ATV09743.1\|2746432_2746996_-	hypothetical protein	A0A0M4R331	Salmonella_phage	1.3e-79	75.7
ATV09744.1\|2746970_2747360_-\|head,tail	head-tail adaptor	A0A0M3ULK0	Salmonella_phage	5.6e-66	95.3
ATV09745.1\|2747346_2747901_-	hypothetical protein	A0A0M4S631	Salmonella_phage	1.7e-79	83.2
ATV09746.1\|2747897_2748305_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	4.3e-69	94.8
ATV09747.1\|2748270_2748492_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	7.7e-12	68.6
ATV09748.1\|2748533_2749475_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.2e-155	86.3
ATV09749.1\|2749486_2749993_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	1.1e-69	79.3
ATV09750.1\|2749996_2751217_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	3.2e-200	88.0
ATV09751.1\|2751231_2751669_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	5.0e-71	89.7
ATV09752.1\|2751855_2753322_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	6.7e-261	91.8
ATV09753.1\|2753321_2754944_-	TerL protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	95.4
ATV09754.1\|2754946_2755519_-\|terminase	terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	6.1e-61	69.6
ATV09755.1\|2755580_2756105_-	hypothetical protein	K7P6W1	Enterobacteria_phage	4.5e-42	66.9
ATV09756.1\|2756088_2756565_-	lysozyme	Q8SBE0	Shigella_phage	2.1e-86	96.2
ATV09757.1\|2756568_2756910_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.8e-53	91.9
ATV09758.1\|2757355_2757697_-	hypothetical protein	NA	NA	NA	NA
ATV09759.1\|2757728_2758151_-	antitermination protein	Q8W638	Enterobacteria_phage	8.8e-41	63.3
ATV09760.1\|2758432_2760625_-	replication protein	B6SCY1	Bacteriophage	1.2e-173	71.3
ATV09761.1\|2760628_2760841_-	XRE family transcriptional regulator	A0A0R6PHL1	Moraxella_phage	7.9e-06	42.9
ATV09762.1\|2760961_2761585_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	3.3e-36	44.8
ATV09763.1\|2762364_2763267_+	hypothetical protein	Q3LZP9	Bacteriophage	6.1e-07	54.4
ATV09764.1\|2763269_2764571_+	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	7.2e-134	56.4
ATV09765.1\|2764586_2765135_+	DUF2815 domain-containing protein	Q775A5	Bordetella_phage	1.6e-66	65.9
ATV12111.1\|2765186_2765825_+	hypothetical protein	H6WRY3	Salmonella_phage	3.9e-72	68.8
ATV09766.1\|2765924_2766161_-	hypothetical protein	NA	NA	NA	NA
ATV09767.1\|2766217_2768281_+	DNA polymerase	Q775A3	Bordetella_phage	8.7e-275	67.8
ATV09768.1\|2768286_2768490_+	hypothetical protein	K7PLX1	Enterobacteria_phage	3.2e-12	55.4
ATV09769.1\|2768495_2768717_+	hypothetical protein	NA	NA	NA	NA
ATV09770.1\|2768706_2769189_+	malonyl-ACP O-methyltransferase BioC	H9C170	Pectobacterium_phage	3.6e-70	79.6
ATV09771.1\|2769188_2769482_+	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	5.0e-27	68.2
ATV09772.1\|2769451_2770483_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	1.1e-100	53.0
ATV09773.1\|2770479_2770800_-	hypothetical protein	NA	NA	NA	NA
ATV09774.1\|2770834_2772229_+	ATP-dependent helicase	Q3LZN8	Bacteriophage	7.3e-217	74.7
ATV09775.1\|2772225_2772426_+	DNA-binding protein	NA	NA	NA	NA
ATV09776.1\|2772422_2773820_-	recombinase	NA	NA	NA	NA
ATV09777.1\|2774034_2774295_+	ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.7e-18	54.7

DBSCAN-SWA_6

4077774 : 4089335

Enterobacteria_phage(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
ATV11023.1\|4077774_4078962_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	1.5e-207	91.2
ATV12162.1\|4079008_4079536_-	hypothetical protein	NA	NA	NA	NA
ATV12163.1\|4079542_4080628_-	hypothetical protein	NA	NA	NA	NA
ATV11024.1\|4080924_4081497_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	5.0e-95	96.8
ATV11025.1\|4081570_4082071_-	transactivation protein	NA	NA	NA	NA
ATV11026.1\|4082067_4082802_-	glycoprotein 3	Q7M2A2	Enterobacteria_phage	1.1e-126	96.3
ATV11027.1\|4083354_4083621_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
ATV11028.1\|4083617_4084208_+	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	2.0e-59	89.6
ATV11029.1\|4084200_4084488_+	Derepression protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
ATV11030.1\|4084480_4084936_+	hypothetical protein	Q7M298	Enterobacteria_phage	1.6e-64	99.1
ATV11031.1\|4085071_4085392_+	hypothetical protein	NA	NA	NA	NA
ATV11032.1\|4085406_4087740_+	50S ribosomal protein L37ae	Q7M2A8	Enterobacteria_phage	0.0e+00	99.0
ATV11033.1\|4088297_4089335_+	hydroxyacid dehydrogenase	Q9JMN3	Wolbachia_phage	7.4e-73	43.6

DBSCAN-SWA_7

4995318 : 5036262

Enterobacteria_phage(48.94%)

terminase,holin,integrase,portal,lysis,tail

attL 4995069:4995088|attR 5040214:5040233

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4995069:4995088	attL	NA	NA	NA	NA
ATV11922.1\|4995318_4996533_+\|integrase	site-specific integrase	A0A291AWU1	Escherichia_phage	1.6e-236	99.3
ATV11923.1\|4996908_4997904_-	hypothetical protein	NA	NA	NA	NA
ATV11924.1\|4998277_4998472_-	DNA-binding protein	A5LH59	Enterobacteria_phage	2.5e-30	93.8
ATV11925.1\|4998471_4999092_-	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	1.2e-118	95.6
ATV11926.1\|4999091_4999454_-	hypothetical protein	U5P092	Shigella_phage	1.3e-64	95.8
ATV11927.1\|4999444_4999981_-	HD family hydrolase	S5MW55	Escherichia_phage	7.4e-101	100.0
ATV11928.1\|5000108_5000933_-	DUF2303 domain-containing protein	U5P439	Shigella_phage	6.6e-149	99.3
ATV11929.1\|5000998_5001361_-	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
ATV11930.1\|5001433_5001658_+	hypothetical protein	A0A291AWX8	Escherichia_phage	4.9e-14	66.2
ATV11931.1\|5001566_5001857_+	hypothetical protein	U5P0J5	Shigella_phage	1.2e-41	96.2
ATV11932.1\|5001829_5002342_+	hypothetical protein	NA	NA	NA	NA
ATV11933.1\|5002657_5003350_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	7.3e-125	99.1
ATV11934.1\|5003323_5003476_+	amino acid permease	NA	NA	NA	NA
ATV11935.1\|5003447_5003708_+	XRE family transcriptional regulator	S5FKP1	Shigella_phage	9.3e-41	98.8
ATV11936.1\|5003700_5004252_+	hypothetical protein	K7PGU3	Enterobacteria_phage	1.1e-99	97.8
ATV11937.1\|5004248_5005085_+	ash family protein	Q8SBF3	Shigella_phage	1.1e-138	92.4
ATV12209.1\|5005089_5005314_+	hypothetical protein	A0A291AX25	Escherichia_phage	9.1e-37	97.3
ATV11938.1\|5005310_5006129_+	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	4.7e-123	99.6
ATV11939.1\|5006125_5006620_+	PerC family transcriptional regulator	A0A291AWV6	Escherichia_phage	8.1e-86	97.5
ATV11940.1\|5006619_5007273_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
ATV11941.1\|5007269_5007596_+	LexA family transcriptional regulator	K7PLX6	Enterobacteria_phage	2.0e-53	99.1
ATV11942.1\|5007592_5007982_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
ATV11943.1\|5008001_5008844_+	DNA-binding protein	S5MC03	Escherichia_phage	5.7e-140	91.8
ATV11944.1\|5008851_5009841_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	8.1e-194	99.1
ATV11945.1\|5009858_5010200_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	4.2e-57	90.3
ATV11946.1\|5010212_5010761_-	hypothetical protein	NA	NA	NA	NA
ATV11947.1\|5010747_5011674_-	hypothetical protein	NA	NA	NA	NA
ATV11948.1\|5011938_5012142_+	hypothetical protein	A0A291AWX6	Escherichia_phage	3.0e-31	98.5
ATV11949.1\|5012292_5013345_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.6e-206	98.9
ATV12210.1\|5013421_5013748_+\|holin	phage holin, lambda family	U5P0K7	Shigella_phage	2.6e-56	98.1
ATV11950.1\|5013751_5014228_+	lysozyme	K7PKV2	Enterobacteria_phage	2.5e-84	95.6
ATV11951.1\|5014224_5014668_+\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	1.5e-70	93.9
ATV11952.1\|5014706_5015081_+	hypothetical protein	M1FPD9	Enterobacteria_phage	2.5e-55	87.9
ATV11953.1\|5015179_5015362_-	hypothetical protein	NA	NA	NA	NA
ATV11954.1\|5015360_5015561_+	hypothetical protein	K7PJR7	Enterobacteria_phage	2.3e-31	93.9
ATV11955.1\|5015719_5016214_+	DUF1441 domain-containing protein	A0A291AWV8	Escherichia_phage	3.8e-83	99.4
ATV11956.1\|5016213_5018316_+\|terminase	phage terminase large subunit family protein	K7PH40	Enterobacteria_phage	0.0e+00	99.6
ATV11957.1\|5018312_5018525_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
ATV11958.1\|5018524_5020033_+\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	1.6e-289	99.8
ATV11959.1\|5019977_5022005_+	peptidase S14	A5LH30	Enterobacteria_phage	0.0e+00	99.5
ATV11960.1\|5022046_5022415_+	DUF2190 domain-containing protein	A0A291AWX2	Escherichia_phage	9.7e-52	100.0
ATV11961.1\|5022407_5022683_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
ATV11962.1\|5022694_5023273_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	2.1e-101	99.5
ATV12212.1\|5023269_5023671_+\|tail	phage tail protein	A5LH34	Enterobacteria_phage	1.6e-71	98.5
ATV11963.1\|5023681_5024425_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.6e-130	98.0
ATV12211.1\|5024485_5024872_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	3.3e-66	100.0
ATV11964.1\|5024880_5025210_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
ATV11965.1\|5025181_5028247_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.8
ATV11966.1\|5028246_5028576_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	5.1e-60	99.1
ATV11967.1\|5028585_5029284_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	8.9e-131	97.0
ATV11968.1\|5029288_5030032_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	7.7e-149	97.2
ATV11969.1\|5030660_5034143_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.1
ATV11970.1\|5034201_5036262_+\|tail	phage tail protein	A0A0E3M194	Enterobacteria_phage	5.7e-125	54.9
5040214:5040233	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP024652

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP024650

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection