CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP027202	Escherichia coli strain WCHEC025943 plasmid pMCR1_025943, complete sequence	0 crisprs	csa3	0	0	1
CP027203	Escherichia coli strain WCHEC025943 plasmid pMCR3_025943, complete sequence	0 crisprs	NA	0	0	5
CP027201	Escherichia coli strain WCHEC025943 plasmid p3_025943, complete sequence	0 crisprs	NA	0	0	0
CP027205	Escherichia coli strain WCHEC025943 chromosome, complete genome	10 crisprs	RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,cas3,DEDDh,c2c9_V-U4,DinG,WYL	1	14	10
CP027199	Escherichia coli strain WCHEC025943 plasmid p1_025943, complete sequence	0 crisprs	NA	0	0	1
CP027204	Escherichia coli strain WCHEC025943 plasmid pNDM5_025943, complete sequence	0 crisprs	NA	0	0	0
CP027200	Escherichia coli strain WCHEC025943 plasmid p2_025943, complete sequence	0 crisprs	NA	0	0	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 95578

105

Escherichia_phage(64.36%)

plate,holin,terminase,transposase,portal,head,lysis,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVM98528.1\|0_861_+	replication protein RepA	Q71TL8	Escherichia_phage	4.7e-158	100.0
AVM98529.1\|1418_2615_+	ParA family protein	A0A077SL49	Escherichia_phage	1.6e-225	100.0
AVM98530.1\|2631_3633_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.7e-178	100.0
AVM98531.1\|3858_5565_+	hypothetical protein	Q71TM1	Escherichia_phage	0.0e+00	99.8
AVM98532.1\|5625_7215_+	hypothetical protein	Q71TB2	Escherichia_phage	2.9e-302	98.9
AVM98533.1\|7224_8040_+	hypothetical protein	A0A1B0V835	Salmonella_phage	2.4e-111	98.2
AVM98534.1\|8075_8657_+	hypothetical protein	Q1MVJ8	Enterobacteria_phage	7.3e-102	97.4
AVM98535.1\|8668_9178_+\|plate	baseplate protein	Q1MVJ9	Enterobacteria_phage	1.3e-91	100.0
AVM98536.1\|9293_9449_-	type I toxin-antitoxin system Hok family toxin	A0A1I9LJU7	Stx_converting_phage	4.0e-15	90.2
AVM98628.1\|9630_9876_-	hypothetical protein	A0A1B0VDM5	Salmonella_phage	3.5e-13	45.0
AVM98537.1\|9926_10772_-	Replication protein repL	Q1MVK3	Enterobacteria_phage	1.5e-151	98.9
AVM98538.1\|10801_11602_-	DNA-binding protein	Q1MVK4	Enterobacteria_phage	1.6e-147	99.6
AVM98539.1\|11766_12810_-	phage antirepressor Ant	Q71TN2	Escherichia_phage	2.7e-171	92.5
AVM98629.1\|12806_13028_-	host cell division inhibitor Icd-like protein	Q38557	Escherichia_phage	3.6e-38	97.3
AVM98540.1\|13428_14103_+	hypothetical protein	Q71TC4	Escherichia_phage	2.0e-18	92.0
AVM98541.1\|14361_14631_+	hypothetical protein	NA	NA	NA	NA
AVM98542.1\|14689_15256_+	hypothetical protein	Q71TN7	Escherichia_phage	3.3e-99	98.9
AVM98543.1\|15266_15878_+\|tail	phage tail protein	Q71TN8	Escherichia_phage	2.9e-109	99.5
AVM98544.1\|15892_16774_+	morphogenetic protein	Q71TC9	Escherichia_phage	2.2e-174	100.0
AVM98545.1\|16855_20596_+	lytic transglycosylase domain-containing protein	Q1MVL3	Enterobacteria_phage	0.0e+00	86.8
AVM98546.1\|20595_20952_+	hypothetical protein	Q71TP1	Escherichia_phage	1.0e-61	100.0
AVM98547.1\|20948_22382_+	bleomycin hydrolase	Q71TP2	Escherichia_phage	3.4e-270	99.4
AVM98548.1\|22381_23218_+\|tail	phage tail protein	A0A077SLH5	Escherichia_phage	1.5e-153	99.6
AVM98549.1\|23296_23731_+\|tail	phage tail protein	Q71TD4	Escherichia_phage	3.7e-74	98.6
AVM98550.1\|27782_28016_+	hypothetical protein	NA	NA	NA	NA
AVM98551.1\|28467_28749_+	hypothetical protein	Q71TD9	Escherichia_phage	8.7e-45	97.8
AVM98552.1\|28816_29146_+\|holin	holin	Q37876	Escherichia_phage	1.3e-52	100.0
AVM98553.1\|29142_29586_+\|lysis	lysis protein	A0A077SK09	Escherichia_phage	1.3e-82	100.0
AVM98554.1\|29572_30175_+	odaE	Q1MVM6	Enterobacteria_phage	1.6e-99	99.5
AVM98555.1\|30176_32096_+	hypothetical protein	A0A1B0V7H1	Salmonella_phage	0.0e+00	98.6
AVM98556.1\|32092_32458_+	ddrA	Q1MVM8	Enterobacteria_phage	1.5e-44	96.7
AVM98557.1\|32470_35458_+	hypothetical protein	A0A1B0VFX4	Salmonella_phage	0.0e+00	99.0
AVM98558.1\|35447_35756_+	hypothetical protein	O21974	Escherichia_phage	5.4e-48	97.1
AVM98559.1\|35786_36581_-	hypothetical protein	Q71TF1	Escherichia_phage	1.5e-142	95.8
AVM98560.1\|36783_37272_-	single-stranded DNA-binding protein	A0A1B0VAF5	Salmonella_phage	1.9e-87	99.4
AVM98561.1\|37441_37999_+	lysozyme	Q71TF3	Escherichia_phage	6.7e-105	98.4
AVM98562.1\|38134_38311_+\|holin	antiholin	Q71TR5	Escherichia_phage	2.3e-27	94.8
AVM98563.1\|38290_39310_-\|head	head processing protein	Q71TR6	Escherichia_phage	2.2e-178	96.5
AVM98564.1\|39302_41012_-\|portal	phage portal protein	Q71TR7	Escherichia_phage	0.0e+00	99.5
AVM98565.1\|41783_44801_-\|transposase	Tn3-like element IS3000 family transposase	A0A125RQ78	Bacillus_phage	5.5e-52	24.7
AVM98630.1\|45603_51096_+	helicase	A0A077SK04	Escherichia_phage	0.0e+00	98.7
AVM98566.1\|51129_51570_+	peptide-binding protein	A0A077SLF0	Escherichia_phage	1.7e-79	100.0
AVM98567.1\|51566_51815_+	modulator protein	Q71TG0	Escherichia_phage	1.8e-41	100.0
AVM98568.1\|51861_53169_-	SIR2 family protein	NA	NA	NA	NA
AVM98569.1\|53225_53867_-	maturation control protein	A0A077SK30	Escherichia_phage	1.6e-113	98.1
AVM98570.1\|54055_54616_-	recombinase	Q5QBN4	Enterobacteria_phage	2.9e-100	99.5
AVM98571.1\|54865_55177_-	lysogeny establishment protein	Q5QBN5	Enterobacteria_phage	3.0e-46	99.0
AVM98572.1\|55227_56259_-	recombinase	Q71TG5	Escherichia_phage	4.6e-192	98.8
AVM98573.1\|56266_56488_-	creatininase	Q5QBN7	Enterobacteria_phage	1.3e-35	98.6
AVM98574.1\|56899_57013_+	peptidase	Q5XLQ7	Enterobacteria_phage	3.2e-14	100.0
AVM98575.1\|57031_57127_+	peptidase	Q38402	Escherichia_phage	2.8e-11	100.0
AVM98576.1\|57092_57302_+	c1 repressor inactivator	A0A077SK26	Escherichia_phage	1.8e-31	100.0
AVM98577.1\|57412_58264_+	hypothetical protein	A0A077SLM8	Escherichia_phage	2.8e-158	99.6
AVM98578.1\|58296_59319_-	phage antirepressor Ant	A0A077SLR9	Escherichia_phage	3.2e-161	86.3
AVM98579.1\|59343_60552_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
AVM98580.1\|60743_61307_-	host cell division inhibitor Icd-like protein	Q38557	Escherichia_phage	4.1e-25	80.3
AVM98581.1\|61303_62788_-\|terminase	terminase	Q5QBP2	Enterobacteria_phage	2.1e-291	99.6
AVM98582.1\|62787_63981_-\|terminase	terminase	Q5QBP3	Enterobacteria_phage	4.1e-208	99.0
AVM98583.1\|64067_64520_-	Late promoter-activating protein	Q71T63	Escherichia_phage	6.7e-79	99.3
AVM98584.1\|64608_65652_-	DUF968 domain-containing protein	A0A1B0VBU2	Salmonella_phage	3.0e-207	99.7
AVM98585.1\|65679_65859_-	PdcA protein	Q71TH5	Escherichia_phage	1.2e-23	98.3
AVM98586.1\|65863_66244_-	type II toxin-antitoxin system death-on-curing family toxin	A0A077SK56	Escherichia_phage	1.1e-63	100.0
AVM98587.1\|66243_66465_-	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
AVM98588.1\|66537_66927_-	DNA repair protein	Q1MVE7	Enterobacteria_phage	1.4e-69	99.2
AVM98589.1\|67050_67302_-	DNA polymerase III subunit theta	A0A077SLL5	Escherichia_phage	1.4e-38	100.0
AVM98631.1\|67475_67685_+	hypothetical protein	A0A222YY00	Escherichia_phage	1.1e-31	98.6
AVM98590.1\|68508_68883_-	hypothetical protein	A0A1B0VBU7	Salmonella_phage	9.2e-66	96.8
AVM98591.1\|68889_69183_-	hypothetical protein	A0A077SK23	Escherichia_phage	1.2e-44	92.8
AVM98592.1\|69361_69595_-	hypothetical protein	A0A1B0V7L5	Salmonella_phage	2.5e-37	100.0
AVM98593.1\|69671_69932_-	eaa protein	A0A077SLR0	Escherichia_phage	9.3e-41	96.5
AVM98594.1\|69928_70726_-	DUF551 domain-containing protein	A0A192Y7X3	Salmonella_phage	8.8e-50	46.1
AVM98595.1\|70727_71372_-	ead/Ea22-like family protein	K7P6J7	Enterobacteria_phage	1.1e-53	56.0
AVM98596.1\|71368_72019_-	ead/Ea22-like family protein	A0A0F6TJR7	Escherichia_coli_O157_typing_phage	1.1e-26	82.1
AVM98597.1\|72015_72255_-	hypothetical protein	S5MQM0	Escherichia_phage	1.3e-36	97.5
AVM98598.1\|72247_72451_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	5.2e-31	95.5
AVM98599.1\|72534_73263_-	hypothetical protein	Q71T76	Escherichia_phage	1.7e-140	99.1
AVM98600.1\|73457_73964_-	3'-phosphatase	A0A1B0VAK0	Salmonella_phage	1.8e-93	99.4
AVM98601.1\|74036_75299_-	hypothetical protein	A0A1B0V7L1	Salmonella_phage	1.6e-234	99.8
AVM98602.1\|75300_75519_-	hypothetical protein	Q71TI9	Escherichia_phage	3.4e-36	100.0
AVM98603.1\|75600_76302_-	hypothetical protein	Q1MVG6	Enterobacteria_phage	4.2e-144	100.0
AVM98604.1\|76298_76976_-	serine/threonine protein phosphatase	A0A077SLQ6	Escherichia_phage	7.6e-135	100.0
AVM98605.1\|76972_77599_-	norphogenetic protein	A0A077SK52	Escherichia_phage	4.0e-122	99.0
AVM98606.1\|77496_78159_-	norphogenetic protein	Q71T83	Escherichia_phage	9.4e-122	98.6
AVM98607.1\|78100_78256_-	norphogenetic protein	Q71TJ4	Escherichia_phage	2.7e-19	96.1
AVM98608.1\|78322_78901_-	VRR-NUC domain-containing protein	Q71T85	Escherichia_phage	1.5e-107	99.5
AVM98609.1\|78903_79149_-	hypothetical protein	Q71T86	Escherichia_phage	2.1e-39	98.8
AVM98610.1\|79295_79673_+	hypothetical protein	Q38620	Escherichia_phage	2.2e-67	100.0
AVM98611.1\|79682_80900_+\|tail	phage tail protein	A0A077SL53	Escherichia_phage	4.1e-224	99.8
AVM98612.1\|80903_81632_+\|tail	phage tail protein	Q71TJ9	Escherichia_phage	4.2e-139	100.0
AVM98613.1\|81618_82404_+\|plate	baseplate	A0A1B0V7N6	Salmonella_phage	2.7e-144	99.6
AVM98614.1\|82405_83422_+\|tail	phage tail tape measure protein	A0A077SLQ1	Escherichia_phage	3.5e-192	100.0
AVM98615.1\|83414_84047_+\|plate	baseplate protein	Q1MVH8	Enterobacteria_phage	9.0e-90	100.0
AVM98616.1\|84093_85092_-	hypothetical protein	Q71TK3	Escherichia_phage	1.4e-193	99.1
AVM98617.1\|85091_86456_-	replicative DNA helicase	O80281	Escherichia_phage	1.6e-253	99.8
AVM98618.1\|86446_86662_+	hypothetical protein	NA	NA	NA	NA
AYC76614.1\|86928_87093_-	DUF3927 domain-containing protein	Q71T96	Escherichia_phage	2.9e-16	98.1
AVM98619.1\|87092_87518_-	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	1.8e-70	99.3
AVM98620.1\|87709_87901_+	hypothetical protein	Q71T98	Escherichia_phage	6.0e-29	100.0
AVM98621.1\|89075_92117_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A077SL51	Escherichia_phage	0.0e+00	86.8
AVM98622.1\|92113_93019_-	recombination-associated protein RdgC	A0A077SK17	Escherichia_phage	5.0e-158	96.0
AVM98623.1\|93011_93296_-	hypothetical protein	Q71TA2	Escherichia_phage	7.7e-49	98.9
AVM98624.1\|93569_93749_+	hypothetical protein	A0A1B0V758	Salmonella_phage	6.8e-27	98.3
AVM98625.1\|93757_94546_+	hypothetical protein	A0A1B0V830	Salmonella_phage	8.6e-114	92.3
AVM98626.1\|94585_95008_+	ppfA	Q71TL5	Escherichia_phage	7.4e-56	85.7
AVM98627.1\|95185_95578_+	hypothetical protein	A0A1B0VBK3	Salmonella_phage	2.4e-72	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP027202

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

96406 : 177677

Escherichia_phage(48.28%)

integrase,transposase

attL 100030:100089|attR 150266:151086

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVM98812.1\|96406_97111_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVM98813.1\|97236_97821_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AVM98814.1\|97820_99059_-	MFS transporter	NA	NA	NA	NA
AVM98815.1\|99055_99961_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
100030:100089	attL	NA	NA	NA	NA
AVM98816.1\|100082_100787_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVM98817.1\|100777_100966_+	hypothetical protein	NA	NA	NA	NA
AVM98818.1\|101053_102490_+	glutathione synthase	NA	NA	NA	NA
AVM98819.1\|102803_103070_-	hypothetical protein	NA	NA	NA	NA
AVM98820.1\|103157_103829_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA
AVM98821.1\|103838_104543_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVM98822.1\|104725_105031_-	PadR family transcriptional regulator	NA	NA	NA	NA
AVM98823.1\|105041_106247_-	chromate efflux transporter	NA	NA	NA	NA
AVM98824.1\|107462_107549_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
AVM98825.1\|107564_109484_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	98.0
AVM98826.1\|109559_110165_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	7.0e-116	99.5
AVM98827.1\|110939_111605_-	hypothetical protein	NA	NA	NA	NA
AVM98828.1\|111662_112043_-	hypothetical protein	NA	NA	NA	NA
AVM98829.1\|112685_113504_+	DUF4942 domain-containing protein	NA	NA	NA	NA
AVM98830.1\|113500_114706_+	ATP/GTP-binding protein	NA	NA	NA	NA
AVM98831.1\|114769_114973_-	hypothetical protein	NA	NA	NA	NA
AVM98832.1\|114985_116305_-	DUF1173 family protein	NA	NA	NA	NA
AVM98833.1\|116555_117983_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.4e-100	52.3
AVM98834.1\|118197_118713_+	thermonuclease family protein	A0A1X6WF84	Pacmanvirus	2.1e-07	38.6
AVM98835.1\|118715_119612_+	hypothetical protein	NA	NA	NA	NA
AVM98982.1\|119833_120067_+	hypothetical protein	NA	NA	NA	NA
AVM98836.1\|120112_120367_+	hypothetical protein	NA	NA	NA	NA
AVM98837.1\|120404_120692_+	hypothetical protein	NA	NA	NA	NA
AVM98838.1\|120728_120959_+	hypothetical protein	NA	NA	NA	NA
AVM98839.1\|121295_121757_+	hypothetical protein	NA	NA	NA	NA
AVM98840.1\|121786_122194_+	hypothetical protein	NA	NA	NA	NA
AVM98983.1\|122244_122562_-	hypothetical protein	NA	NA	NA	NA
AVM98984.1\|122938_123289_-	hypothetical protein	NA	NA	NA	NA
AVM98985.1\|125153_125546_+	cysteine hydrolase	NA	NA	NA	NA
AVM98841.1\|125683_126568_+	EamA family transporter	NA	NA	NA	NA
AVM98842.1\|126599_127799_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
AVM98843.1\|127877_128555_+	TetR family transcriptional regulator	NA	NA	NA	NA
AVM98844.1\|128586_128829_-	relaxase	NA	NA	NA	NA
AVM98845.1\|129134_129971_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AVM98846.1\|129970_130774_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
AVM98847.1\|130834_131650_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
AVM98848.1\|131811_132672_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AVM98986.1\|132854_133331_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.5e-76	100.0
AVM98849.1\|133379_134084_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVM98850.1\|133974_134283_-	hypothetical protein	NA	NA	NA	NA
AVM98851.1\|134635_135340_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVM98852.1\|135230_136190_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.7e-47	40.5
AVM98987.1\|136338_137130_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA22	NA	NA	NA	NA
AVM98853.1\|137261_138083_+	lincosamide nucleotidyltransferase Lnu(F)	NA	NA	NA	NA
AVM98854.1\|138235_138940_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVM98855.1\|139560_139752_+	hypothetical protein	NA	NA	NA	NA
AVM98856.1\|140775_141579_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
AVM98857.1\|141578_142415_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AVM98858.1\|142750_143566_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	4.8e-160	98.2
AVM98859.1\|143719_144595_-	acyl-CoA--6-aminopenicillanic acid acyl-transferase	NA	NA	NA	NA
AVM98860.1\|146249_147002_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.4e-41	44.7
AVM98861.1\|147423_148449_-	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA
AVM98862.1\|148435_148657_-	hypothetical protein	NA	NA	NA	NA
AVM98863.1\|148677_149454_-	aminoglycoside N-acetyltransferase AAC(3)-IV	NA	NA	NA	NA
AVM98864.1\|149567_150272_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVM98865.1\|150351_150603_+	tetracycline resistance protein	NA	NA	NA	NA
AVM98866.1\|150869_151175_-	LysR family transcriptional regulator	NA	NA	NA	NA
150266:151086	attR	NA	NA	NA	NA
AVM98867.1\|151202_152417_-	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.5e-16	25.4
AVM98868.1\|152633_153518_-	DUF3363 domain-containing protein	NA	NA	NA	NA
AVM98869.1\|154442_155147_+\|transposase	IS6 family transposase IS1006	A0A077SL39	Escherichia_phage	1.9e-120	85.8
AVM98988.1\|155231_155651_-	hypothetical protein	NA	NA	NA	NA
AVM98870.1\|155641_158593_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.5
AVM98871.1\|158595_159156_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
AVM98872.1\|161173_162142_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.6e-186	100.0
AVM98873.1\|162176_163052_-	class A extended-spectrum beta-lactamase CTX-M-65	A0A1B0VBP7	Salmonella_phage	6.8e-152	98.9
AVM98874.1\|163556_164183_-	hypothetical protein	NA	NA	NA	NA
AVM98875.1\|164780_165485_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVM98876.1\|165709_165913_-	hypothetical protein	NA	NA	NA	NA
AVM98877.1\|165931_166111_+	hypothetical protein	NA	NA	NA	NA
AVM98878.1\|166040_166880_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AVM98879.1\|167060_167225_+	cupin domain-containing protein	NA	NA	NA	NA
AVM98880.1\|168615_169320_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVM98881.1\|169265_169445_-	hypothetical protein	Q1MVP5	Enterobacteria_phage	7.3e-05	85.7
AVM98882.1\|169513_169900_+	bleomycin binding protein	NA	NA	NA	NA
AVM98883.1\|170219_170612_-	NimC/NimA family protein	NA	NA	NA	NA
AVM98884.1\|170946_171651_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AVM98885.1\|171970_173146_+	multidrug efflux RND transporter periplasmic adaptor subunit OqxA	NA	NA	NA	NA
AVM98886.1\|173169_176322_+	multidrug efflux RND transporter permease subunit OqxB	NA	NA	NA	NA
AVM98887.1\|176391_176871_-	transcriptional regulator	NA	NA	NA	NA
AVM98888.1\|176972_177677_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP027203

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 13230

Leptospira_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVM98997.1\|271_598_-	hypothetical protein	NA	NA	NA	NA
AVM99045.1\|594_924_-	hypothetical protein	NA	NA	NA	NA
AVM98996.1\|944_1478_-	conjugative transfer signal peptidase TraF	NA	NA	NA	NA
AVM98995.1\|1474_3421_-	conjugal transfer protein TraG	NA	NA	NA	NA
AYC76615.1\|3407_3563_-	hypothetical protein	NA	NA	NA	NA
AVM98994.1\|3559_6169_-	conjugal transfer protein TraI	NA	NA	NA	NA
AVM98993.1\|6217_6574_-	conjugal transfer protein TraJ	NA	NA	NA	NA
AVM98992.1\|6921_7356_+	DNA-processing protein	NA	NA	NA	NA
AVM99044.1\|7355_8141_+	conjugal transfer protein TraL	NA	NA	NA	NA
AVM99043.1\|8140_8581_+	conjugal transfer protein TraM	NA	NA	NA	NA
AVM99042.1\|8631_8865_+	hypothetical protein	NA	NA	NA	NA
AVM99050.1\|8963_9446_-	hypothetical protein	NA	NA	NA	NA
AVM99041.1\|9825_10506_-	traN-like protein	NA	NA	NA	NA
AVM99049.1\|10527_10857_-	conjugal transfer protein TraO	NA	NA	NA	NA
AVM99040.1\|11127_11334_-	hypothetical protein	NA	NA	NA	NA
AVM99039.1\|11458_12472_-	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	6.7e-10	29.4
AVM99048.1\|12471_13230_-	ParA family protein	E9LUK9	Lactobacillus_phage	2.6e-06	22.7

DBSCAN-SWA_2

16539 : 18920

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVM99032.1\|16539_17007_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	6.2e-11	32.0
AVM99031.1\|17188_17386_-	DUF905 domain-containing protein	NA	NA	NA	NA
AVM99030.1\|18055_18304_-	antirestriction protein ArdR	NA	NA	NA	NA
AVM99029.1\|18303_18612_-	addiction module antidote protein, HigA family	A0A222YWD7	Escherichia_phage	1.3e-12	44.0
AVM99028.1\|18620_18920_-	toxin	A0A222YWE2	Escherichia_phage	1.5e-18	49.5

DBSCAN-SWA_3

33227 : 33914

Xanthomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVM99013.1\|33227_33914_+	conjugal transfer protein TraX	A0A1W6DY89	Xanthomonas_phage	2.5e-24	34.0

DBSCAN-SWA_4

37494 : 38199

Escherichia_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVM99010.1\|37494_38199_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6

DBSCAN-SWA_5

44601 : 48561

Caulobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVM99000.1\|44601_48561_-	DUF1738 domain-containing protein	A0A1V0EBY3	Caulobacter_phage	1.7e-32	38.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP027200

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1262 : 42244

Salmonella_phage(23.53%)

transposase,integrase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVM98633.1\|1262_1994_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	1.5e-19	52.5
AVM98634.1\|2223_2928_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVM98635.1\|3148_3463_-\|transposase	transposase	NA	NA	NA	NA
AVM98636.1\|3401_4415_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AVM98709.1\|4706_5261_+	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
AVM98637.1\|5357_5810_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
AVM98638.1\|5942_6416_+	trimethoprim-resistant dihydrofolate reductase DfrA27	G3MBI7	Bacillus_virus	1.4e-15	29.1
AVM98639.1\|6596_7442_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA16	NA	NA	NA	NA
AVM98640.1\|7558_7906_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AVM98641.1\|7899_8739_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AVM98642.1\|9143_10685_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AVM98643.1\|11277_12033_-	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1	NA	NA	NA	NA
AVM98644.1\|12202_13063_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AVM98645.1\|13245_13653_-	resolvase	Q1MVP4	Enterobacteria_phage	1.0e-57	100.0
AVM98646.1\|13658_14363_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVM98647.1\|14595_15456_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
AVM98648.1\|15468_16011_+	tunicamycin resistance protein	NA	NA	NA	NA
AVM98649.1\|16492_16684_-	hypothetical protein	NA	NA	NA	NA
AVM98650.1\|16689_16935_+	hypothetical protein	NA	NA	NA	NA
AVM98651.1\|16985_18122_+	DUF3883 domain-containing protein	NA	NA	NA	NA
AVM98652.1\|18236_19607_+\|transposase	IS1182-like element ISCfr1 family transposase	NA	NA	NA	NA
AVM98653.1\|20427_21288_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
AVM98654.1\|21518_22355_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
AVM98655.1\|22354_23158_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
AVM98656.1\|23218_24034_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
AVM98657.1\|24363_24540_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
AVM98658.1\|24721_25726_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
AVM98659.1\|25804_28771_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
AVM98660.1\|29141_29846_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AVM98661.2\|29915_30389_-	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
AVM98662.1\|30544_31558_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AVM98663.1\|31496_32111_+	DUF3330 domain-containing protein	NA	NA	NA	NA
AVM98664.1\|32286_32847_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
AVM98665.1\|32850_33447_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	4.7e-64	85.1
AVM98666.1\|33478_34156_-	TetR family transcriptional regulator	NA	NA	NA	NA
AVM98667.1\|34234_35434_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
AVM98668.1\|35465_36350_-	EamA family transporter	NA	NA	NA	NA
AVM98710.1\|36487_36880_-	cysteine hydrolase	NA	NA	NA	NA
AVM98669.1\|38849_40622_-	DUF262 domain-containing protein	NA	NA	NA	NA
AVM98670.1\|40805_40910_-	hypothetical protein	NA	NA	NA	NA
AVM98671.1\|40906_41371_-	mRNA interferase PemK	NA	NA	NA	NA
AVM98672.1\|41590_42244_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_2

55543 : 62131

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVM98689.1\|55543_56227_-	DNA methylase	A0A2I7RE86	Vibrio_phage	5.1e-30	36.9
AVM98690.1\|56302_56608_-	hypothetical protein	NA	NA	NA	NA
AVM98691.1\|56611_57583_-	DUF1281 domain-containing protein	NA	NA	NA	NA
AVM98692.1\|57551_57821_-	hypothetical protein	NA	NA	NA	NA
AVM98693.1\|57931_58180_+	protein ImpC	Q2A098	Sodalis_phage	1.9e-14	48.0
AVM98694.1\|58176_58614_+	peptidase	A0A1W6JNS2	Morganella_phage	8.3e-26	48.4
AVM98695.1\|58613_59885_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.2e-142	60.2
AVM98696.1\|59889_60318_-	plasmid stability protein	NA	NA	NA	NA
AVM98697.1\|60286_61258_-	plasmid segregation protein parM	A0A222YXF2	Escherichia_phage	1.3e-66	42.9
AVM98698.1\|61486_62131_+	chromosome partitioning protein ParA	A0A222YXS3	Escherichia_phage	1.9e-39	43.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. CP027205

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP027205_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027205_1

636634-636773

Orphan

Consensus_repeat	Method
TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027205_1

>merge|CP027205|1|636634-636773|CRISPRCasFinder
TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAACAGCAGTCGGATGCGGCGTAAACACCTTATCTGACCTACGTTTTGTGTCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA

>CP027205|1|1|636634-636773|CRISPRCasFinder
TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	ACAGCAGTCGGATGCGGCGTAAACACCTTATCTGACCTACGT
TTTGTGTCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP027205.2\|AVM99702.1\|631199_632195_-\|collagenase	unknown	unknown	gnl\|CDD\|223896
CP027205.2\|AVM99719.1\|647499_648303_-\|N-acetylgalactosamine-permease-IIC-component-1	unknown	unknown	gnl\|CDD\|236621
CP027205.2\|AVM99707.1\|634187_634706_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
CP027205.2\|AVM99704.1\|632921_633425_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
CP027205.2\|AVM99706.1\|633764_634208_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235127
CP027205.2\|AVM99708.1\|634833_635469_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187560
CP027205.2\|AVM99701.1\|629099_630107_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
CP027205.2\|AVM99713.1\|638334_640371_-\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|225649
CP027205.2\|AVM99703.1\|632403_632928_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
CP027205.2\|AVM99718.1\|646718_647510_-\|PTS-N-acetylgalactosamine-transporter-subunit-IID	unknown	unknown	gnl\|CDD\|182115
CP027205.2\|AVM99711.1\|637371_637962_-\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
CP027205.2\|AVM99709.1\|635541_636582_+\|permease	unknown	unknown	gnl\|CDD\|223773
CP027205.2\|AVM99710.1\|636786_637362_-\|osmotically-inducible-protein-OsmY	unknown	unknown	gnl\|CDD\|182907
CP027205.2\|AVM99717.1\|645962_646718_-\|galactosamine-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|182064
CP027205.2\|AVM99714.1\|640435_641296_+\|rRNA-(cytidine-2'-O-)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
CP027205.2\|AVM99715.1\|641338_642430_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
CP027205.2\|AVM99716.1\|642440_644813_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
CP027205.2\|AVM99705.1\|633411_633714_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
CP027205.2\|AVN03540.1\|630312_631191_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
CP027205.2\|AVM99712.1\|637981_638377_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|129354

Protein	Function_ID	Function_description	E-value
CP027205.2\|AVM99702.1\|631199_632195_-\|collagenase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.87234e-118
CP027205.2\|AVM99719.1\|647499_648303_-\|N-acetylgalactosamine-permease-IIC-component-1	gnl\|CDD\|236621	PRK09757, PRK09757, PTS N-acetylgalactosamine transporter subunit IIC.	2.85176e-176
CP027205.2\|AVM99707.1\|634187_634706_-\|glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	6.06977e-86
CP027205.2\|AVM99704.1\|632921_633425_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.31299e-64
CP027205.2\|AVM99706.1\|633764_634208_+\|hypothetical-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	2.19601e-100
CP027205.2\|AVM99708.1\|634833_635469_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.89133e-65
CP027205.2\|AVM99701.1\|629099_630107_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
CP027205.2\|AVM99713.1\|638334_640371_-\|penicillin-binding-protein-activator	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	6.33924e-141
CP027205.2\|AVM99703.1\|632403_632928_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	8.79126e-85
CP027205.2\|AVM99718.1\|646718_647510_-\|PTS-N-acetylgalactosamine-transporter-subunit-IID	gnl\|CDD\|182115	PRK09855, PRK09855, PTS N-acetylgalactosamine transporter subunit IID.	5.05026e-179
CP027205.2\|AVM99711.1\|637371_637962_-\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	5.61903e-143
CP027205.2\|AVM99709.1\|635541_636582_+\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	4.11883e-63
CP027205.2\|AVM99710.1\|636786_637362_-\|osmotically-inducible-protein-OsmY	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.97056e-117
CP027205.2\|AVM99717.1\|645962_646718_-\|galactosamine-6-phosphate-isomerase	gnl\|CDD\|182064	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional.	1.51027e-147
CP027205.2\|AVM99714.1\|640435_641296_+\|rRNA-(cytidine-2'-O-)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
CP027205.2\|AVM99715.1\|641338_642430_-\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	3.34626e-21
CP027205.2\|AVM99716.1\|642440_644813_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
CP027205.2\|AVM99705.1\|633411_633714_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	3.58629e-45
CP027205.2\|AVN03540.1\|630312_631191_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
CP027205.2\|AVM99712.1\|637981_638377_-\|YraN-family-protein	gnl\|CDD\|129354	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment [Hypothetical proteins, Conserved].	3.92681e-63

>CP027205.2|AVM99709.1|635541_636582_+|permease
MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWEPYYGKAFTAAETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLSWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGTVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGLALLF
>CP027205.2|AVM99708.1|634833_635469_+|NAD-dependent-epimerase/dehydratase-family-protein
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLTDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAESMRPEHEGVTILSSSELRKRAE
>CP027205.2|AVM99707.1|634187_634706_-|glutamine-amidotransferase
MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>CP027205.2|AVM99706.1|633764_634208_+|hypothetical-protein
METLIAISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFYILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYNRRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA
>CP027205.2|AVM99705.1|633411_633714_-|GIY-YIG-nuclease-family-protein
MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKGELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD
>CP027205.2|AVM99704.1|632921_633425_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEYHEHFNRF
>CP027205.2|AVM99703.1|632403_632928_+|SCP2-domain-containing-protein
MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQALDDGELEFLEGRWLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMKNAPETKQTSVGEPC
>CP027205.2|AVM99702.1|631199_632195_-|collagenase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKADPQNFVPQSAWMETLGSMSEGTQTTLGAYHRKWQ
>CP027205.2|AVN03540.1|630312_631191_-|U32-family-peptidase
MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNMCAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLNGIQTMSGYVYNLGNELASMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANSDCNGYWRRLAGLELQA
>CP027205.2|AVM99701.1|629099_630107_-|LLM-class-flavin-dependent-oxidoreductase
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPNVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG
>CP027205.2|AVM99710.1|636786_637362_-|osmotically-inducible-protein-OsmY
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFIK
>CP027205.2|AVM99711.1|637371_637962_-|DnaA-initiator-associating-protein-DiaA
MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD
>CP027205.2|AVM99712.1|637981_638377_-|YraN-family-protein
MATVPTRSGSPRQLTTKQTGDAWEAQARRWLEGKGLRFIAANVNERGGEIDLIMREGRTTVFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGSFDTVDCRFDVVAFTGNEVEWIKDAFNDHS
>CP027205.2|AVM99713.1|638334_640371_-|penicillin-binding-protein-activator
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKTLLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGSPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS
>CP027205.2|AVM99714.1|640435_641296_+|rRNA-(cytidine-2'-O-)-methyltransferase
MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQG
>CP027205.2|AVM99715.1|641338_642430_-|fimbrial-protein
MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVTVNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQAGYYKLNDSLDIKTTLKANDIPGLVTDQTVSVNTRFTQIKSNTVYSAATQTGVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGDFHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITYDCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNAPDVGIRIENLGGGVANIPFQNGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITVIVR
>CP027205.2|AVM99716.1|642440_644813_-|fimbrial-biogenesis-outer-membrane-usher-protein
MLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYSGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVGVSGQQWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSVNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
>CP027205.2|AVM99717.1|645962_646718_-|galactosamine-6-phosphate-isomerase
MERGTASGGASLLKEFHPVQTLQQVENYTALSERASEYLLAVIRSKPDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVSTAIPASFLWLHSNFICLINT
>CP027205.2|AVM99718.1|646718_647510_-|PTS-N-acetylgalactosamine-transporter-subunit-IID
MGSEISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKKIYKDDKPGLSAAMKDNLEFINTHPNLVGFLMGLLISMEEKGENRDTIKGLKVALFGPIAGIGDAIFWFTLLPIMAGICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGVKAIDKVRENSQMIARSATILGITVIGGLIASYVHINVVTSFAIDSTHSVALQQDFFDKVFPNILPMAYTLLMYYFLRVKKAHPVLLIGVTFVLSIVCSAFGIL
>CP027205.2|AVM99719.1|647499_648303_-|N-acetylgalactosamine-permease-IIC-component-1
MHEITLLQGLSLAALVFVLGIDFWLEALFLFRPIIVCTLTGAILGDIQTGLITGGLTELAFAGLTPAGGVQPPNPIMAGLMTTVIAWSTGVDAKTAIGLGLPFSLLMQYVILFFYSAFSLFMTKADKCAKEADTAAFSRLNWTTMLIVASAYAVIAFLCTYLAQGAMQALVKAMPAWLTHGFEVAGGILPAVGFGLLLRVMFKAQYIPYLIAGFLFVCYIQVSNLLPVAVLGAGFAVYEFFNAKSRQQAQPQPVASKNEEEDYSNGI

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Crispr_ID: CP027205_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027205_2

665028-665279

Orphan

Consensus_repeat	Method
TTTTGGAGGAGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA	PILER-CR

2 spacers

The CRISPR arrays of CP027205_2

>merge|CP027205|2|665028-665279|PILER-CR
AGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATTTACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGAGCGGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGTAAAAAACCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA

>CP027205|2|1|665028-665279|PILER-CR
AGATGAATGACTGTCCACGACAGAACCCGGCTTATCGGTCAGTTTCACCTGATT	TACGTAAAAACCCGCTTCGGCGGGTTTTTGCTTTTGGAGGAGCGGAAAGATGAATGACTGTCCA
CGACGCTATACCCAAAAGAAAGCGGCTTATCGGTCAGTTTCACCTGGTTTACGT	AAAAAACCGCTTCGGCGGGTTTTTGCTTTTGGAGGGGCAGAAAGATGAATGACTGTCCA
CGACGCTATACCCAAAAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP027205.2\|AVM99731.1\|657491_657956_-\|type-II-toxin-antitoxin-system-YhaV-family-toxin	unknown	unknown	gnl\|CDD\|371659
CP027205.2\|AVM99735.1\|661735_662506_+\|5-keto-4-deoxy-D-glucarate-aldolase	unknown	unknown	gnl\|CDD\|182547
CP027205.2\|AVM99740.1\|668114_669053_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|182391
CP027205.2\|AVM99730.1\|656627_657437_+\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182086
CP027205.2\|AVM99732.1\|657955_658291_-\|antitoxin-PrlF	unknown	unknown	gnl\|CDD\|236638
CP027205.2\|AVM99728.1\|655098_656379_-\|tagatose-bisphosphate-aldolase-subunit-KbaZ	unknown	unknown	gnl\|CDD\|185355
CP027205.2\|AVM99727.1\|654602_655076_-\|PTS-N-acetylgalactosamine-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|183129
CP027205.2\|AVM99736.1\|663522_664668_+\|glycerate-2-kinase	unknown	unknown	gnl\|CDD\|182392
CP027205.2\|AVM99737.1\|665577_666765_-\|YhaC-family-protein	unknown	unknown	gnl\|CDD\|182043
CP027205.2\|AVM99739.1\|667581_667926_-\|DNA-binding-transcriptional-activator-TdcR	unknown	unknown	gnl\|CDD\|236909
CP027205.2\|AVM99746.1\|675530_676895_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000
CP027205.2\|AVM99734.1\|660385_661720_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
CP027205.2\|AVM99741.1\|669151_670141_+\|serine/threonine-dehydratase	unknown	unknown	gnl\|CDD\|236317
CP027205.2\|AVM99743.1\|671519_672728_+\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484
CP027205.2\|AVM99745.1\|675069_675459_+\|enamine/imine-deaminase	unknown	unknown	gnl\|CDD\|105214
CP027205.2\|AVM99744.1\|672761_675056_+\|PFL-like-enzyme-TdcE	unknown	unknown	gnl\|CDD\|153087
CP027205.2\|AVN03541.1\|662535_663426_+\|2-hydroxy-3-oxopropionate-reductase	unknown	unknown	gnl\|CDD\|183197
CP027205.2\|AVM99738.1\|666786_667326_-\|hypothetical-protein	unknown	unknown	unknown
CP027205.2\|AVM99742.1\|670162_671494_+\|threonine/serine-transporter-TdcC	unknown	unknown	gnl\|CDD\|184191
CP027205.2\|AVM99733.1\|658439_660011_-\|D-galactarate-dehydratase	unknown	unknown	gnl\|CDD\|274491

Protein	Function_ID	Function_description	E-value
CP027205.2\|AVM99731.1\|657491_657956_-\|type-II-toxin-antitoxin-system-YhaV-family-toxin	gnl\|CDD\|371659	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system. YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity.	3.04838e-73
CP027205.2\|AVM99735.1\|661735_662506_+\|5-keto-4-deoxy-D-glucarate-aldolase	gnl\|CDD\|182547	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional.	0
CP027205.2\|AVM99740.1\|668114_669053_+\|transcriptional-regulator	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
CP027205.2\|AVM99730.1\|656627_657437_+\|DeoR-family-transcriptional-regulator	gnl\|CDD\|182086	PRK09802, PRK09802, DeoR family transcriptional regulator.	0
CP027205.2\|AVM99732.1\|657955_658291_-\|antitoxin-PrlF	gnl\|CDD\|236638	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin.	5.08893e-52
CP027205.2\|AVM99728.1\|655098_656379_-\|tagatose-bisphosphate-aldolase-subunit-KbaZ	gnl\|CDD\|185355	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional.	0
CP027205.2\|AVM99727.1\|654602_655076_-\|PTS-N-acetylgalactosamine-transporter-subunit-IIB	gnl\|CDD\|183129	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB.	2.31755e-109
CP027205.2\|AVM99736.1\|663522_664668_+\|glycerate-2-kinase	gnl\|CDD\|182392	PRK10342, PRK10342, glycerate kinase I; Provisional.	0
CP027205.2\|AVM99737.1\|665577_666765_-\|YhaC-family-protein	gnl\|CDD\|182043	PRK09716, PRK09716, YhaC family protein.	0
CP027205.2\|AVM99739.1\|667581_667926_-\|DNA-binding-transcriptional-activator-TdcR	gnl\|CDD\|236909	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional.	3.36123e-66
CP027205.2\|AVM99746.1\|675530_676895_+\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
CP027205.2\|AVM99734.1\|660385_661720_+\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	4.1837e-133
CP027205.2\|AVM99741.1\|669151_670141_+\|serine/threonine-dehydratase	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
CP027205.2\|AVM99743.1\|671519_672728_+\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
CP027205.2\|AVM99745.1\|675069_675459_+\|enamine/imine-deaminase	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	1.34001e-81
CP027205.2\|AVM99744.1\|672761_675056_+\|PFL-like-enzyme-TdcE	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
CP027205.2\|AVN03541.1\|662535_663426_+\|2-hydroxy-3-oxopropionate-reductase	gnl\|CDD\|183197	PRK11559, garR, tartronate semialdehyde reductase; Provisional.	0
CP027205.2\|AVM99742.1\|670162_671494_+\|threonine/serine-transporter-TdcC	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0
CP027205.2\|AVM99733.1\|658439_660011_-\|D-galactarate-dehydratase	gnl\|CDD\|274491	TIGR03248, galactar-dH20, galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0714).	0

>CP027205.2|AVM99736.1|663522_664668_+|glycerate-2-kinase
MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSIPVADGGEGTVEAMIAATQGSERHAWVTGPLGEKVNASWGISGDGKTAFIEMAAASGLELVPAEKRDPLVTTSRGTGELILQALESGATNIIIGIGGSATNDGGAGMVQALGAKLCDANGNEIGFGGGSLNTLNDIDISGLDPRLKDCVIRVACDVTNPLVGDNGASRIFGPQKGASEAMIVELDNNLSHYADVIKKALHVDVKDVPGAGAAGGMGAALMAFLGAELKSGIEIVTTALNLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDDVGVVHQHGIDAVFSVLTSIGTLDEAFRGAYDNICRASRNIAATLAIGMRNAG
>CP027205.2|AVN03541.1|662535_663426_+|2-hydroxy-3-oxopropionate-reductase
MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNQEAIADVIAAGSETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTADHSALACYYEKLAKVEVTR
>CP027205.2|AVM99735.1|661735_662506_+|5-keto-4-deoxy-D-glucarate-aldolase
MNNDVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAEQAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNIDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPIEADARRYLEWGATFVAVGSDLGVFRSATQKLADTFKK
>CP027205.2|AVM99734.1|660385_661720_+|MFS-transporter
MILDTVDVKKKGVHTRYLILLIIFIVTAVNYADRATLSIAGTEVAKELQLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGISMFFMRFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLTFAWGWEHVFTVMGVIGFVLTALWIKLIHNPTDHPRMSAEELKFISENGAVVDMDHKKPGSAAASGPKLHYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKVGLVASIPALCGFAGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLLASTIILCNYTNNTTLVVMLMALAFFGKGFGALGWSVISDTAPKEIVGLCGGVFNVFGNVASIVTPLVIGYLVSELHSFNAALIFVGCSALMAMVCYLFVVGDIKRMELQK
>CP027205.2|AVM99733.1|658439_660011_-|D-galactarate-dehydratase
MANIEIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPEAPPLHTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNISLNPNFGGEVMVIGLGCEKLQPERLLTGTDDVQAIPVESASIVSLQDEKHVGFQSMVEDILQVAERHLQKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAVNEEVGKRLLEEMEWYDNYLNIGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWFDLMDINAGTIATGEETIEEVGWKLFHFILDVASGKKKTFSDQWGLHNQLAVFNPAPVT
>CP027205.2|AVM99732.1|657955_658291_-|antitoxin-PrlF
MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHYEILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNNPQKTRPFNIQQGKKLVAGMDVNIDDEIGDDE
>CP027205.2|AVM99731.1|657491_657956_-|type-II-toxin-antitoxin-system-YhaV-family-toxin
MDFPQRVNGWALYAHPCFQETYDALVAEVEALKGKDPENYQRKAATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKNKDWSRVKFGAGRYRLFFRYSEKEKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWESLTQETEENH
>CP027205.2|AVM99730.1|656627_657437_+|DeoR-family-transcriptional-regulator
MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE
>CP027205.2|AVM99728.1|655098_656379_-|tagatose-bisphosphate-aldolase-subunit-KbaZ
MKHLTEMVRQHKAGKTNAIYAVCSAHPLVLEAAIRYASANQTPLLIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQDALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFKKIHLDCSMSCQDDPIPLTDDIVAERAARLAKVAEETCLEHFGEADLEYVIGTEVPVPGGAHETLSELAVTTPDAARATLEAHRHAFEKQGLNAIWPRIIALVVQPGVEFDHTNVIDYQPAKASALSQMVENYETLIFEAHSTDYQTPQSLRQLVIDHFAILKVGPALTFALREALFSLAAIEEELVPAKACSGLRQVLEDVMLDRPEYWQSHYHGDGNARRLARGYSYSDRVRYYWPDSQIDDAFAHLVRNLADSPIPLPLISQYLPLQYVKVRSGELQPTPRELIINHIQDILAQYHTACEGQ
>CP027205.2|AVM99727.1|654602_655076_-|PTS-N-acetylgalactosamine-transporter-subunit-IIB
MPNIVLSRIDERLIHGQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVLAEGIAVRFWTLQKVIDNIHRAADRQKILLVCKTPADFLTLVKGGVPVNRINVGNMHYANGKQQIAKTVSVDAGDIAAFNDLKAAGVECFVQGVPTEPAVDLFKLL
>CP027205.2|AVM99737.1|665577_666765_-|YhaC-family-protein
MFPVSSIGNDISSDLVRRKMNDLPESPIVNNLEALAPGIEKLKQTSIQMVTLLNALQPGGKCIITGDFQKELAYLQNVILYNDSSLRMDFFGYNALIIQRSDNTCELTINEPLKNQEISTGNINVNFPLKDIYNEIRRLNVVFSCGTGGIVDLSSLDLRNIDLELYDFTDKHMANAILNPFKLDDTDFTNANMFQVNFVSSKQNTTISWDYLLKITPVLTSISDMYSEEKIKLVESCLNELGDITEEQLKIMRFAIIESIPRATLTDQLENELTKEIYKNSSKINNYLNRIKLPEMKGFSSEKIDYYIDIIIKDYESVKENAYLIDPKINYNTDLNIEDSSSEEFLSDNTLEKDENSPDNCFEVVKYNTYEAYNSENLYFTREEYTYDYDLLNAI
>CP027205.2|AVM99738.1|666786_667326_-|hypothetical-protein
MKGFPIAHIFHPSIPPMHAVVNNHNRNIDYWTVKRKFAEIVSTNDVNKIYSISNELRRVLSAITALNFYQGDVPSVMIRIQPENMSPFIIDISTGEHDDYIIQTLDVGTFAPFGEQCTCSAVNKKELECIKETISKYCAKFTRKEAILTPPAHFNKTSITSDCWQILFFSPDHFNNDFY
>CP027205.2|AVM99739.1|667581_667926_-|DNA-binding-transcriptional-activator-TdcR
MTGITIFYGDNIIRYVVNIKKGLRPYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP
>CP027205.2|AVM99740.1|668114_669053_+|transcriptional-regulator
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG
>CP027205.2|AVM99741.1|669151_670141_+|serine/threonine-dehydratase
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA
>CP027205.2|AVM99742.1|670162_671494_+|threonine/serine-transporter-TdcC
MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF
>CP027205.2|AVM99743.1|671519_672728_+|propionate-kinase
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGVEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHLGKVNAPAEFA
>CP027205.2|AVM99744.1|672761_675056_+|PFL-like-enzyme-TdcE
MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL
>CP027205.2|AVM99745.1|675069_675459_+|enamine/imine-deaminase
MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSYVQVARLPKDVKLEIEAIAVRSA
>CP027205.2|AVM99746.1|675530_676895_+|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG

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Crispr_ID: CP027205_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027205_3

679860-679977

Orphan

Consensus_repeat	Method
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027205_3

>merge|CP027205|3|679860-679977|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGATGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

>CP027205|3|2|679860-679977|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	GTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGA
TGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP027205.2\|AVM99758.1\|685576_685882_-\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
CP027205.2\|AVM99750.1\|680237_680939_-\|pirin-like-protein-YhaK	unknown	unknown	gnl\|CDD\|224655
CP027205.2\|AVM99746.1\|675530_676895_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000
CP027205.2\|AVM99740.1\|668114_669053_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|182391
CP027205.2\|AVM99739.1\|667581_667926_-\|DNA-binding-transcriptional-activator-TdcR	unknown	unknown	gnl\|CDD\|236909
CP027205.2\|AVM99745.1\|675069_675459_+\|enamine/imine-deaminase	unknown	unknown	gnl\|CDD\|105214
CP027205.2\|AVM99749.1\|680050_680215_-\|hypothetical-protein	unknown	unknown	unknown
CP027205.2\|AVM99741.1\|669151_670141_+\|serine/threonine-dehydratase	unknown	unknown	gnl\|CDD\|236317
CP027205.2\|AVM99755.1\|684302_684785_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
CP027205.2\|AVM99756.1\|684880_685180_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372871
CP027205.2\|AVM99748.1\|678528_679839_+\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
CP027205.2\|AVM99754.1\|683246_684233_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223512
CP027205.2\|AVM99743.1\|671519_672728_+\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484
CP027205.2\|AVM99757.1\|685169_685574_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227681
CP027205.2\|AVM99751.1\|681043_681940_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
CP027205.2\|AVM99753.1\|682588_682954_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
CP027205.2\|AVM99747.1\|677169_678501_+\|transporter	unknown	unknown	gnl\|CDD\|273283
CP027205.2\|AVM99744.1\|672761_675056_+\|PFL-like-enzyme-TdcE	unknown	unknown	gnl\|CDD\|153087
CP027205.2\|AVM99752.1\|681990_682347_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
CP027205.2\|AVM99742.1\|670162_671494_+\|threonine/serine-transporter-TdcC	unknown	unknown	gnl\|CDD\|184191

Protein	Function_ID	Function_description	E-value
CP027205.2\|AVM99758.1\|685576_685882_-\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.46625e-41
CP027205.2\|AVM99750.1\|680237_680939_-\|pirin-like-protein-YhaK	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.02982e-67
CP027205.2\|AVM99746.1\|675530_676895_+\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
CP027205.2\|AVM99740.1\|668114_669053_+\|transcriptional-regulator	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
CP027205.2\|AVM99739.1\|667581_667926_-\|DNA-binding-transcriptional-activator-TdcR	gnl\|CDD\|236909	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional.	3.36123e-66
CP027205.2\|AVM99745.1\|675069_675459_+\|enamine/imine-deaminase	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	1.34001e-81
CP027205.2\|AVM99741.1\|669151_670141_+\|serine/threonine-dehydratase	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
CP027205.2\|AVM99755.1\|684302_684785_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.8476e-29
CP027205.2\|AVM99756.1\|684880_685180_-\|hypothetical-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	6.11451e-20
CP027205.2\|AVM99748.1\|678528_679839_+\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0
CP027205.2\|AVM99754.1\|683246_684233_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
CP027205.2\|AVM99743.1\|671519_672728_+\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
CP027205.2\|AVM99757.1\|685169_685574_-\|hypothetical-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	2.73939e-60
CP027205.2\|AVM99751.1\|681043_681940_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.2986e-51
CP027205.2\|AVM99753.1\|682588_682954_-\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	3.68376e-42
CP027205.2\|AVM99747.1\|677169_678501_+\|transporter	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	2.53913e-167
CP027205.2\|AVM99744.1\|672761_675056_+\|PFL-like-enzyme-TdcE	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
CP027205.2\|AVM99752.1\|681990_682347_-\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	1.64644e-35
CP027205.2\|AVM99742.1\|670162_671494_+\|threonine/serine-transporter-TdcC	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0

>CP027205.2|AVM99748.1|678528_679839_+|serine-dehydratase-subunit-alpha-family-protein
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
>CP027205.2|AVM99747.1|677169_678501_+|transporter
MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS
>CP027205.2|AVM99746.1|675530_676895_+|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
>CP027205.2|AVM99745.1|675069_675459_+|enamine/imine-deaminase
MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSYVQVARLPKDVKLEIEAIAVRSA
>CP027205.2|AVM99744.1|672761_675056_+|PFL-like-enzyme-TdcE
MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL
>CP027205.2|AVM99743.1|671519_672728_+|propionate-kinase
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGVEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHLGKVNAPAEFA
>CP027205.2|AVM99742.1|670162_671494_+|threonine/serine-transporter-TdcC
MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF
>CP027205.2|AVM99741.1|669151_670141_+|serine/threonine-dehydratase
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA
>CP027205.2|AVM99740.1|668114_669053_+|transcriptional-regulator
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG
>CP027205.2|AVM99739.1|667581_667926_-|DNA-binding-transcriptional-activator-TdcR
MTGITIFYGDNIIRYVVNIKKGLRPYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP
>CP027205.2|AVM99749.1|680050_680215_-|hypothetical-protein
MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA
>CP027205.2|AVM99750.1|680237_680939_-|pirin-like-protein-YhaK
MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVWLHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLPV
>CP027205.2|AVM99751.1|681043_681940_+|LysR-family-transcriptional-regulator
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFSGK
>CP027205.2|AVM99752.1|681990_682347_-|DUF805-domain-containing-protein
MQWYLAVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLEFPFLSLIYLAATIIPVIALCVRRLHDTDRSGAWALLYLVPIIGWLVLFVFACLEGNSGSNRYGNDPKFGSN
>CP027205.2|AVM99753.1|682588_682954_-|DUF805-domain-containing-protein
MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLEP
>CP027205.2|AVM99754.1|683246_684233_-|glutathione-S-transferase-family-protein
MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQQAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISNYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG
>CP027205.2|AVM99755.1|684302_684785_-|DoxX-family-protein
MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVARILMPILFITAGWGKITGYAGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW
>CP027205.2|AVM99756.1|684880_685180_-|hypothetical-protein
MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWNMLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG
>CP027205.2|AVM99757.1|685169_685574_-|hypothetical-protein
MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ
>CP027205.2|AVM99758.1|685576_685882_-|DUF883-domain-containing-protein
MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR

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Crispr_ID: CP027205_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027205_4

1053310-1053826

Orphan

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

8 spacers

The CRISPR arrays of CP027205_4

>merge|CP027205|4|1053310-1053826|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGTCCACGCTGTAACGGCCATCATTAAGTTTAGTGAGTTCCCCGCGCCAGCGGGGATAAACCGGCTGATGGTCTGGGAGTGTCCATCGGGCAACTGAGTTCCCCGCGCCAGCGGGGATAAACCGGAAGTAGGCCTGACAGTGATTGAACGCATACTGAGTTCCCCGCGCCAGCGGGGATAAACCGAGTTGGGGCGGCGCAATAACGAGACGATACGCGAGTTCCCCGCGCCAGCGGGGATAAACCGGGGAGTGGCACTTCTGGGGTAGCGGCGGCCCTGAGTTCCCCGCGCCAGCGGGGATAAACCGTCAACGCGCTCAGACGTTGCGTGAGTGAACCAGAGTTCCCCGCGCCAGCGGGGATAAACCGAAATATCCAGGGCTGGGCTGGAGGCAGACGGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCCCGGAATGCATTCTGAAGGTTTGCTGTATATGAGTTCCCCGCGCCAGCGGGGATAAACCA

>CP027205|4|2|1053310-1053825|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACC	GTCCACGCTGTAACGGCCATCATTAAGTTTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACC	GGCTGATGGTCTGGGAGTGTCCATCGGGCAACT
GAGTTCCCCGCGCCAGCGGGGATAAACC	GGAAGTAGGCCTGACAGTGATTGAACGCATACT
GAGTTCCCCGCGCCAGCGGGGATAAACC	GAGTTGGGGCGGCGCAATAACGAGACGATACGC
GAGTTCCCCGCGCCAGCGGGGATAAACC	GGGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
GAGTTCCCCGCGCCAGCGGGGATAAACC	GTCAACGCGCTCAGACGTTGCGTGAGTGAACCA
GAGTTCCCCGCGCCAGCGGGGATAAACC	GAAATATCCAGGGCTGGGCTGGAGGCAGACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCCCGGAATGCATTCTGAAGGTTTGCTGTATAT
GAGTTCCCCGCGCCAGCGGGGATAAACC

>CP027205|4|3|1053310-1053826|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACGCTGTAACGGCCATCATTAAGTTTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGGTCTGGGAGTGTCCATCGGGCAACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGTAGGCCTGACAGTGATTGAACGCATACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGGGGCGGCGCAATAACGAGACGATACGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>CP027205|4|1|1053310-1053826|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACGCTGTAACGGCCATCATTAAGTTTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGGTCTGGGAGTGTCCATCGGGCAACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGTAGGCCTGACAGTGATTGAACGCATACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGGGGCGGCGCAATAACGAGACGATACGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
CP027205.2\|AVN00091.1\|1049775_1051074_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP027205.2\|AVN00101.1\|1062058_1062919_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
CP027205.2\|AVN00098.1\|1058419_1059874_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
CP027205.2\|AVN00090.1\|1048050_1049688_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP027205.2\|AVN00089.1\|1047031_1047823_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP027205.2\|AVN00086.1\|1044065_1046300_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP027205.2\|AVN00094.1\|1052298_1052970_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP027205.2\|AVN00093.1\|1052019_1052160_-\|hypothetical-protein	unknown	unknown	unknown
CP027205.2\|AVN00087.1\|1046377_1046626_+\|MazF-MazE-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
CP027205.2\|AVN00099.1\|1059967_1061305_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
CP027205.2\|AVN00088.1\|1046625_1046961_+\|mRNA-interferase-MazF	unknown	unknown	gnl\|CDD\|182138
CP027205.2\|AVN00102.1\|1063066_1063642_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
CP027205.2\|AVN00085.1\|1042716_1044018_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP027205.2\|AVN00103.1\|1063658_1063919_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
CP027205.2\|AVN00097.1\|1057564_1058350_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
CP027205.2\|AVN00095.1\|1054463_1055942_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
CP027205.2\|AVN00100.1\|1061282_1062062_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
CP027205.2\|AVN00092.1\|1051133_1052006_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
CP027205.2\|AVN00104.1\|1063909_1065181_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
CP027205.2\|AVN00096.1\|1055968_1057246_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949

Protein	Function_ID	Function_description	E-value
CP027205.2\|AVN00091.1\|1049775_1051074_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP027205.2\|AVN00101.1\|1062058_1062919_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.47186e-88
CP027205.2\|AVN00098.1\|1058419_1059874_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82
CP027205.2\|AVN00090.1\|1048050_1049688_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP027205.2\|AVN00089.1\|1047031_1047823_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
CP027205.2\|AVN00086.1\|1044065_1046300_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP027205.2\|AVN00094.1\|1052298_1052970_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.23739e-155
CP027205.2\|AVN00092.1\|1051133_1052006_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	4.46208e-100
CP027205.2\|AVN00087.1\|1046377_1046626_+\|MazF-MazE-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
CP027205.2\|AVN00099.1\|1059967_1061305_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.74708e-50
CP027205.2\|AVN00088.1\|1046625_1046961_+\|mRNA-interferase-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
CP027205.2\|AVN00102.1\|1063066_1063642_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
CP027205.2\|AVN00085.1\|1042716_1044018_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP027205.2\|AVN00103.1\|1063658_1063919_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.6328e-41
CP027205.2\|AVN00097.1\|1057564_1058350_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.14687e-138
CP027205.2\|AVN00095.1\|1054463_1055942_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	9.76816e-108
CP027205.2\|AVN00100.1\|1061282_1062062_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.46503e-62
CP027205.2\|AVN00104.1\|1063909_1065181_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.82789e-125
CP027205.2\|AVN00096.1\|1055968_1057246_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	5.26475e-29

>CP027205.2|AVN00094.1|1052298_1052970_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVISRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP027205.2|AVN00093.1|1052019_1052160_-|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>CP027205.2|AVN00092.1|1051133_1052006_-|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIKVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQCSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>CP027205.2|AVN00091.1|1049775_1051074_+|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP027205.2|AVN00090.1|1048050_1049688_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP027205.2|AVN00089.1|1047031_1047823_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP027205.2|AVN00088.1|1046625_1046961_+|mRNA-interferase-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>CP027205.2|AVN00087.1|1046377_1046626_+|MazF-MazE-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>CP027205.2|AVN00086.1|1044065_1046300_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>CP027205.2|AVN00085.1|1042716_1044018_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>CP027205.2|AVN00095.1|1054463_1055942_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNYFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>CP027205.2|AVN00096.1|1055968_1057246_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFIFLLFQKIRTADSAPAMASSK
>CP027205.2|AVN00097.1|1057564_1058350_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAASCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>CP027205.2|AVN00098.1|1058419_1059874_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>CP027205.2|AVN00099.1|1059967_1061305_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>CP027205.2|AVN00100.1|1061282_1062062_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWRDYLRQRMQP
>CP027205.2|AVN00101.1|1062058_1062919_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLIIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>CP027205.2|AVN00102.1|1063066_1063642_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>CP027205.2|AVN00103.1|1063658_1063919_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>CP027205.2|AVN00104.1|1063909_1065181_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERCITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: CP027205_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027205_5

1076212-1076545

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

5 spacers

cas2,cas1,cas6e,cas5

The CRISPR arrays of CP027205_5

>merge|CP027205|5|1076212-1076545|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGGATCTAACGCGCTGTAAAAATTCCGTGCTTTGTGTTCCCCGCGCCAGCGGGGATAAACCATGCGGATTACCGGCAAAACATGGGAGCAAACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAACGGCTGGCGAAGCAGGTGGCTGGCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTTACCGCCCCGCAGAGGCGCTGGCAGATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGATGACCTGTCGCTAAAACTCGCCGCGTACAGTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP027205|5|3|1076212-1076545|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTAACGCGCTGTAAAAATTCCGTGCTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TGCGGATTACCGGCAAAACATGGGAGCAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATGACCTGTCGCTAAAACTCGCCGCGTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP027205|5|4|1076212-1076545|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTAACGCGCTGTAAAAATTCCGTGCTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TGCGGATTACCGGCAAAACATGGGAGCAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATGACCTGTCGCTAAAACTCGCCGCGTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP027205|5|2|1076212-1076545|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTAACGCGCTGTAAAAATTCCGTGCTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TGCGGATTACCGGCAAAACATGGGAGCAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATGACCTGTCGCTAAAACTCGCCGCGTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP027205.2\|AVN00123.1\|1083970_1084732_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP027205.2\|AVN00111.1\|1074254_1074905_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP027205.2\|AVN00108.1\|1069524_1070259_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP027205.2\|AVN00121.1\|1082464_1082944_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP027205.2\|AVN00106.1\|1065939_1067739_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP027205.2\|AVN00122.1\|1082940_1083990_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP027205.2\|AVN00114.1\|1076626_1077664_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP027205.2\|AVN00107.1\|1067738_1069451_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP027205.2\|AVN00116.1\|1078825_1080253_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP027205.2\|AVN00115.1\|1077915_1078824_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP027205.2\|AVN00109.1\|1070523_1070676_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
CP027205.2\|AVN00105.1\|1065258_1065624_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP027205.2\|AVN00118.1\|1080907_1081231_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP027205.2\|AVN00113.1\|1075821_1076115_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP027205.2\|AVN00110.1\|1073526_1074273_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP027205.2\|AVN00117.1\|1080252_1080858_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP027205.2\|AVN00119.1\|1081424_1081736_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP027205.2\|AVN00104.1\|1063909_1065181_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
CP027205.2\|AVN00120.1\|1081754_1082465_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP027205.2\|AVN00112.1\|1074901_1075825_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693

Protein	Function_ID	Function_description	E-value
CP027205.2\|AVN00123.1\|1083970_1084732_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	5.52694e-150
CP027205.2\|AVN00111.1\|1074254_1074905_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.0289e-91
CP027205.2\|AVN00108.1\|1069524_1070259_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.33579e-136
CP027205.2\|AVN00121.1\|1082464_1082944_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.39469e-104
CP027205.2\|AVN00106.1\|1065939_1067739_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP027205.2\|AVN00122.1\|1082940_1083990_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP027205.2\|AVN00114.1\|1076626_1077664_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP027205.2\|AVN00107.1\|1067738_1069451_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP027205.2\|AVN00116.1\|1078825_1080253_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP027205.2\|AVN00115.1\|1077915_1078824_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP027205.2\|AVN00109.1\|1070523_1070676_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
CP027205.2\|AVN00105.1\|1065258_1065624_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
CP027205.2\|AVN00118.1\|1080907_1081231_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP027205.2\|AVN00113.1\|1075821_1076115_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
CP027205.2\|AVN00110.1\|1073526_1074273_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.83917e-49
CP027205.2\|AVN00117.1\|1080252_1080858_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
CP027205.2\|AVN00119.1\|1081424_1081736_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
CP027205.2\|AVN00104.1\|1063909_1065181_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.82789e-125
CP027205.2\|AVN00120.1\|1081754_1082465_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
CP027205.2\|AVN00112.1\|1074901_1075825_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.67486e-158

>CP027205.2|AVN00113.1|1075821_1076115_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>CP027205.2|AVN00112.1|1074901_1075825_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>CP027205.2|AVN00111.1|1074254_1074905_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELRTGQQLCFNLRANPTICKSGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>CP027205.2|AVN00110.1|1073526_1074273_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>CP027205.2|AVN00109.1|1070523_1070676_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>CP027205.2|AVN00108.1|1069524_1070259_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMLEEETRFFGLKRECGLHEG
>CP027205.2|AVN00107.1|1067738_1069451_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>CP027205.2|AVN00106.1|1065939_1067739_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLVRLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKDGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>CP027205.2|AVN00105.1|1065258_1065624_-|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>CP027205.2|AVN00104.1|1063909_1065181_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERCITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
>CP027205.2|AVN00114.1|1076626_1077664_-|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>CP027205.2|AVN00115.1|1077915_1078824_+|sulfate-adenylyltransferase-subunit-2
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP027205.2|AVN00116.1|1078825_1080253_+|sulfate-adenylyltransferase
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEKTFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMAWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>CP027205.2|AVN00117.1|1080252_1080858_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP027205.2|AVN00118.1|1080907_1081231_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP027205.2|AVN00119.1|1081424_1081736_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP027205.2|AVN00120.1|1081754_1082465_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP027205.2|AVN00121.1|1082464_1082944_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYERGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP027205.2|AVN00122.1|1082940_1083990_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP027205.2|AVN00123.1|1083970_1084732_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVICSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: CP027205_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027205_6

1622376-1622493

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027205_6

>merge|CP027205|6|1622376-1622493|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>CP027205|6|5|1622376-1622493|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
CP027205.2\|AVN00635.1\|1641519_1642296_+\|DUF2135-domain-containing-protein	unknown	unknown	gnl\|CDD\|227021
CP027205.2\|AVN00632.1\|1634703_1635327_+\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
CP027205.2\|AVN00626.1\|1620894_1621149_-\|ferredoxin	unknown	unknown	gnl\|CDD\|182668
CP027205.2\|AVN00628.1\|1625493_1629246_+\|AIDA-I-family-autotransporter-YfaL	unknown	unknown	gnl\|CDD\|182059
CP027205.2\|AVN00618.1\|1611642_1612902_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
CP027205.2\|AVN00634.1\|1639865_1641515_+\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
CP027205.2\|AVN00627.1\|1622512_1624798_-\|ribonucleoside-diphosphate-reductase-1-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
CP027205.2\|AVN00633.1\|1635260_1639865_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
CP027205.2\|AVN00624.1\|1619769_1619976_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182050
CP027205.2\|AVN00621.1\|1616155_1617232_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
CP027205.2\|AVN03576.1\|1621148_1622279_-\|ribonucleoside-diphosphate-reductase-1-subunit-beta	unknown	unknown	gnl\|CDD\|181647
CP027205.2\|AVN00625.1\|1620190_1620841_+\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
CP027205.2\|AVN00620.1\|1614792_1616151_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
CP027205.2\|AVN00622.1\|1617450_1617765_-\|hypothetical-protein	unknown	unknown	unknown
CP027205.2\|AVN00636.1\|1642369_1643554_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
CP027205.2\|AVN00619.1\|1612891_1614520_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
CP027205.2\|AVN00630.1\|1630242_1632870_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
CP027205.2\|AVN00617.1\|1610455_1611646_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
CP027205.2\|AVN00631.1\|1633018_1634707_+\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
CP027205.2\|AVN00629.1\|1629373_1630096_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350

Protein	Function_ID	Function_description	E-value
CP027205.2\|AVN00635.1\|1641519_1642296_+\|DUF2135-domain-containing-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	1.0163e-152
CP027205.2\|AVN00632.1\|1634703_1635327_+\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
CP027205.2\|AVN00626.1\|1620894_1621149_-\|ferredoxin	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
CP027205.2\|AVN00628.1\|1625493_1629246_+\|AIDA-I-family-autotransporter-YfaL	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
CP027205.2\|AVN00618.1\|1611642_1612902_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
CP027205.2\|AVN00634.1\|1639865_1641515_+\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	2.06112e-125
CP027205.2\|AVN00627.1\|1622512_1624798_-\|ribonucleoside-diphosphate-reductase-1-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
CP027205.2\|AVN00633.1\|1635260_1639865_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
CP027205.2\|AVN00624.1\|1619769_1619976_-\|hypothetical-protein	gnl\|CDD\|182050	PRK09729, PRK09729, hypothetical protein; Provisional.	2.02381e-36
CP027205.2\|AVN00621.1\|1616155_1617232_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
CP027205.2\|AVN03576.1\|1621148_1622279_-\|ribonucleoside-diphosphate-reductase-1-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
CP027205.2\|AVN00625.1\|1620190_1620841_+\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.43283e-158
CP027205.2\|AVN00620.1\|1614792_1616151_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
CP027205.2\|AVN00636.1\|1642369_1643554_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
CP027205.2\|AVN00619.1\|1612891_1614520_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
CP027205.2\|AVN00630.1\|1630242_1632870_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
CP027205.2\|AVN00617.1\|1610455_1611646_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
CP027205.2\|AVN00631.1\|1633018_1634707_+\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
CP027205.2\|AVN00629.1\|1629373_1630096_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	9.80223e-171

>CP027205.2|AVN03576.1|1621148_1622279_-|ribonucleoside-diphosphate-reductase-1-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>CP027205.2|AVN00626.1|1620894_1621149_-|ferredoxin
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>CP027205.2|AVN00625.1|1620190_1620841_+|lipopolysaccharide-kinase-InaA
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>CP027205.2|AVN00624.1|1619769_1619976_-|hypothetical-protein
MNFIRQGLGIALQPELTLKSIAGELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQTCTEQLVVSGKI
>CP027205.2|AVN00622.1|1617450_1617765_-|hypothetical-protein
MTNKLGGELIDIADKKLAPLINDSFSYTRDFFAYSKQENNIFTFDNSKFVDPKEKEGLMIQHSNGQLVITGKYCPEGVQTAFTQEQYDKLIRYINIFFTFPKCE
>CP027205.2|AVN00621.1|1616155_1617232_+|glycerophosphodiester-phosphodiesterase
MKLKLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYSYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDVLYNKAGVNGLFTDFPDKAVKFLNKE
>CP027205.2|AVN00620.1|1614792_1616151_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>CP027205.2|AVN00619.1|1612891_1614520_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQDPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>CP027205.2|AVN00618.1|1611642_1612902_-|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVMNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>CP027205.2|AVN00617.1|1610455_1611646_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTAKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>CP027205.2|AVN00627.1|1622512_1624798_-|ribonucleoside-diphosphate-reductase-1-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>CP027205.2|AVN00628.1|1625493_1629246_+|AIDA-I-family-autotransporter-YfaL
MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKMVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>CP027205.2|AVN00629.1|1629373_1630096_-|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEKHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNSFKLGPGVDVNYMLHTQNK
>CP027205.2|AVN00630.1|1630242_1632870_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>CP027205.2|AVN00631.1|1633018_1634707_+|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>CP027205.2|AVN00632.1|1634703_1635327_+|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>CP027205.2|AVN00633.1|1635260_1639865_+|alpha-2-macroglobulin-family-protein
MDTQRFQSQFHWHLSFKFSGAIAACLSLSLVGTGLANADDSLPSSNYAPPAGGTFFLLADSSFSSSEEAKVRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVDVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQVNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLITGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEIARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYMRSYAPAQQSVAAGSEWTRMQVK
>CP027205.2|AVN00634.1|1639865_1641515_+|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEEPPLQLALRGAQHDQLYKLSSSGVTNVSTLPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVKPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMAAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>CP027205.2|AVN00635.1|1641519_1642296_+|DUF2135-domain-containing-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPVEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>CP027205.2|AVN00636.1|1642369_1643554_-|acetyl-CoA-C-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKANSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKTLGFDPEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN

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Crispr_ID: CP027205_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027205_7

2228582-2228705

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027205_7

>merge|CP027205|7|2228582-2228705|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP027205|7|6|2228582-2228705|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP027205.2\|AVN01173.1\|2225587_2226400_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
CP027205.2\|AVN01180.1\|2234024_2235236_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
CP027205.2\|AVN01172.1\|2224798_2225584_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
CP027205.2\|AVN01166.1\|2218036_2219449_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
CP027205.2\|AVN01167.1\|2220004_2220214_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
CP027205.2\|AVN01171.1\|2224133_2224802_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
CP027205.2\|AVN01182.1\|2236277_2237303_-\|PurR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236739
CP027205.2\|AVN01184.1\|2237601_2237691_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
CP027205.2\|AVN01186.1\|2239171_2239753_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
CP027205.2\|AVN01174.1\|2226411_2228016_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
CP027205.2\|AVN01169.1\|2221316_2223419_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
CP027205.2\|AVN01185.1\|2237856_2239026_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
CP027205.2\|AVN01177.1\|2230316_2231690_-\|multidrug-resistance-protein-MdtK	unknown	unknown	gnl\|CDD\|234981
CP027205.2\|AVN01168.1\|2220669_2221296_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
CP027205.2\|AVN01170.1\|2223422_2224070_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
CP027205.2\|AVN01179.1\|2232585_2233734_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
CP027205.2\|AVN01181.1\|2235348_2236281_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
CP027205.2\|AVN01175.1\|2228141_2228447_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
CP027205.2\|AVN01178.1\|2231904_2232546_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
CP027205.2\|AVN01176.1\|2229019_2230276_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602

Protein	Function_ID	Function_description	E-value
CP027205.2\|AVN01173.1\|2225587_2226400_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	9.78241e-175
CP027205.2\|AVN01180.1\|2234024_2235236_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
CP027205.2\|AVN01172.1\|2224798_2225584_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.33298e-163
CP027205.2\|AVN01166.1\|2218036_2219449_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
CP027205.2\|AVN01167.1\|2220004_2220214_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
CP027205.2\|AVN01171.1\|2224133_2224802_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.09652e-76
CP027205.2\|AVN01182.1\|2236277_2237303_-\|PurR-family-transcriptional-regulator	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
CP027205.2\|AVN01186.1\|2239171_2239753_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
CP027205.2\|AVN01174.1\|2226411_2228016_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
CP027205.2\|AVN01169.1\|2221316_2223419_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
CP027205.2\|AVN01185.1\|2237856_2239026_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
CP027205.2\|AVN01177.1\|2230316_2231690_-\|multidrug-resistance-protein-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
CP027205.2\|AVN01168.1\|2220669_2221296_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
CP027205.2\|AVN01170.1\|2223422_2224070_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	2.81741e-122
CP027205.2\|AVN01179.1\|2232585_2233734_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
CP027205.2\|AVN01181.1\|2235348_2236281_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
CP027205.2\|AVN01175.1\|2228141_2228447_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
CP027205.2\|AVN01178.1\|2231904_2232546_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.8868e-122
CP027205.2\|AVN01176.1\|2229019_2230276_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0

>CP027205.2|AVN01175.1|2228141_2228447_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>CP027205.2|AVN01174.1|2226411_2228016_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLVVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>CP027205.2|AVN01173.1|2225587_2226400_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLAQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>CP027205.2|AVN01172.1|2224798_2225584_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSVTDYGEKIYLYCKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>CP027205.2|AVN01171.1|2224133_2224802_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>CP027205.2|AVN01170.1|2223422_2224070_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>CP027205.2|AVN01169.1|2221316_2223419_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKELFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPV
>CP027205.2|AVN01168.1|2220669_2221296_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>CP027205.2|AVN01167.1|2220004_2220214_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>CP027205.2|AVN01166.1|2218036_2219449_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>CP027205.2|AVN01176.1|2229019_2230276_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFIVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>CP027205.2|AVN01177.1|2230316_2231690_-|multidrug-resistance-protein-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVIILQRASR
>CP027205.2|AVN01178.1|2231904_2232546_+|riboflavin-synthase
MFTGIVQGTVKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>CP027205.2|AVN01179.1|2232585_2233734_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>CP027205.2|AVN01180.1|2234024_2235236_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>CP027205.2|AVN01181.1|2235348_2236281_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVVLELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>CP027205.2|AVN01182.1|2236277_2237303_-|PurR-family-transcriptional-regulator
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>CP027205.2|AVN01184.1|2237601_2237691_+|YnhF-family-membrane-protein
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>CP027205.2|AVN01185.1|2237856_2239026_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>CP027205.2|AVN01186.1|2239171_2239753_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: CP027205_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027205_10

3255706-3255850

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027205_10

>merge|CP027205|10|3255706-3255850|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>CP027205|10|8|3255706-3255850|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
CP027205.2\|AVN02112.1\|3252324_3252576_-\|hypothetical-protein	unknown	unknown	unknown
CP027205.2\|AVN02125.1\|3265086_3265776_-\|molybdenum-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181841
CP027205.2\|AVN02119.1\|3258317_3259751_-\|anion-permease	unknown	unknown	gnl\|CDD\|279307
CP027205.2\|AVN02122.1\|3262056_3263052_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
CP027205.2\|AVN02126.1\|3265775_3266549_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
CP027205.2\|AVN02128.1\|3266715_3266865_-\|multidrug-efflux-pump-accessory-protein-AcrZ	unknown	unknown	gnl\|CDD\|371231
CP027205.2\|AVN02123.1\|3263206_3264025_+\|pyridoxal-phosphatase	unknown	unknown	gnl\|CDD\|182523
CP027205.2\|AVN02110.1\|3251471_3251693_+\|TraR/DksA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|222775
CP027205.2\|AVN02111.1\|3251903_3252434_-\|hypothetical-protein	unknown	unknown	unknown
CP027205.2\|AVN02124.1\|3264025_3265084_-\|molybdenum-import-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
CP027205.2\|AVN02116.1\|3253151_3254222_+\|integrase	unknown	unknown	gnl\|CDD\|271181
CP027205.2\|AVN02118.1\|3255873_3258135_-\|hydratase	unknown	unknown	gnl\|CDD\|183125
CP027205.2\|AVN02120.1\|3259826_3260879_-\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
CP027205.2\|AVN02113.1\|3252630_3252816_-\|hypothetical-protein	unknown	unknown	unknown
CP027205.2\|AVN02109.1\|3251091_3251373_+\|cell-division-protein-ZapA	unknown	unknown	unknown
CP027205.2\|AVN02114.1\|3252748_3252916_+\|hypothetical-protein	unknown	unknown	unknown
CP027205.2\|AVN02108.1\|3250889_3251081_+\|DUF1382-family-protein	unknown	unknown	gnl\|CDD\|369224
CP027205.2\|AVN02121.1\|3261062_3262016_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
CP027205.2\|AVN02115.1\|3252955_3253174_+\|excisionase	unknown	unknown	gnl\|CDD\|116439
CP027205.2\|AVN02117.1\|3254356_3255640_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|236709

Protein	Function_ID	Function_description	E-value
CP027205.2\|AVN02125.1\|3265086_3265776_-\|molybdenum-ABC-transporter-permease	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146
CP027205.2\|AVN02119.1\|3258317_3259751_-\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
CP027205.2\|AVN02122.1\|3262056_3263052_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
CP027205.2\|AVN02126.1\|3265775_3266549_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
CP027205.2\|AVN02128.1\|3266715_3266865_-\|multidrug-efflux-pump-accessory-protein-AcrZ	gnl\|CDD\|371231	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ. AcrZ is associated with the AcrA-TolC multidrug efflux pump, it may enhance the ability of the pump to recognize and export certain substrates.	1.04381e-17
CP027205.2\|AVN02110.1\|3251471_3251693_+\|TraR/DksA-family-transcriptional-regulator	gnl\|CDD\|222775	PHA00080, PHA00080, DksA-like zinc finger domain containing protein.	1.11886e-26
CP027205.2\|AVN02116.1\|3253151_3254222_+\|integrase	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	8.02573e-62
CP027205.2\|AVN02124.1\|3264025_3265084_-\|molybdenum-import-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
CP027205.2\|AVN02118.1\|3255873_3258135_-\|hydratase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
CP027205.2\|AVN02120.1\|3259826_3260879_-\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
CP027205.2\|AVN02123.1\|3263206_3264025_+\|pyridoxal-phosphatase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
CP027205.2\|AVN02108.1\|3250889_3251081_+\|DUF1382-family-protein	gnl\|CDD\|369224	pfam07131, DUF1382, Protein of unknown function (DUF1382). This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	8.16312e-23
CP027205.2\|AVN02121.1\|3261062_3262016_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.09679e-82
CP027205.2\|AVN02115.1\|3252955_3253174_+\|excisionase	gnl\|CDD\|116439	pfam07825, Exc, Excisionase-like protein. The phage-encoded excisionase protein (Xis) is involved in excisive recombination by regulating the assembly of the excisive intasome and by inhibiting viral integration. It adopts an unusual 'winged'-helix structure in which two alpha helices are packed against two extended strands. Also present in the structure is a two-stranded anti-parallel beta-sheet, whose strands are connected by a four-residue 'wing'. During interaction with DNA, helix alpha2 is thought to insert into the major groove, while the wing contacts the adjacent minor groove or phosphodiester backbone. The C-terminal region of Xis is involved in interaction with phage-encoded integrase (Int), and a putative C-terminal alpha helix may fold upon interaction with Int and/or DNA.	8.49552e-35
CP027205.2\|AVN02117.1\|3254356_3255640_+\|acyl-CoA-thioesterase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0

>CP027205.2|AVN02117.1|3254356_3255640_+|acyl-CoA-thioesterase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>CP027205.2|AVN02116.1|3253151_3254222_+|integrase
MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTVLHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
>CP027205.2|AVN02115.1|3252955_3253174_+|excisionase
MYLTLQEWNARQRRPRSLETVRRWVRECRIFPPPVKDGREYLFHESAVKVDLNRPVTGSLLKRIRNGKKAKS
>CP027205.2|AVN02114.1|3252748_3252916_+|hypothetical-protein
MHFRVTGEWNGEPFNRVIEAENISDCYDHWMLWAQIAHADVTNIRIEELKEHQAA
>CP027205.2|AVN02113.1|3252630_3252816_-|hypothetical-protein
MFSASITLLNGSPFHSPVTRKCIYHLHKTKPAVASSDKRNPRQCEDAVHCCYTLFCSQRKR
>CP027205.2|AVN02112.1|3252324_3252576_-|hypothetical-protein
MSAERAKIHAKNLRNFVYYCAVSNELFSAQKMDGKFVRVRKNFMGAKHEKRFVSLFDLHDSFRADLYFPFLLVAGRYLQGHVS
>CP027205.2|AVN02111.1|3251903_3252434_-|hypothetical-protein
MKKDSYPYLICMTVSGLIFIFLFFWWRADIYRVTFLNQSISHYYILFSMGIAFLLSLFWVKKGIVKQSGWKSLSAYLKVYAGMCIFAGFFLIIPLTTLTYFLPGETSSYVAPYRYTSGSSKSCSGAEVDDPDLHENIRICYPYGNYEYDNIIYVEKKINILGAVVTYAQTARDDTE
>CP027205.2|AVN02110.1|3251471_3251693_+|TraR/DksA-family-transcriptional-regulator
MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLAVQGCRTCASCQQDLELISKQRGSK
>CP027205.2|AVN02109.1|3251091_3251373_+|cell-division-protein-ZapA
MHFSGSGLHILCAYACRHGACSMTPQQENALRSIARQANSEIKKARQQFPDKNVDDICRSVLKKHRETVTLMGFTPTHLSLAIGMLNGVFKER
>CP027205.2|AVN02108.1|3250889_3251081_+|DUF1382-family-protein
MHKASPVELRTSIEMAHSLAQIGVRFVPIPVETDEEFHTLAAFLSQKLEMMVAKAEADERDQV
>CP027205.2|AVN02118.1|3255873_3258135_-|hydratase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAQKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYKIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAQKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMGSLTAEEREIIKAGSLINFNKNRQM
>CP027205.2|AVN02119.1|3258317_3259751_-|anion-permease
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>CP027205.2|AVN02120.1|3259826_3260879_-|4-oxalomesaconate-tautomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDLRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>CP027205.2|AVN02121.1|3261062_3262016_+|LysR-family-transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>CP027205.2|AVN02122.1|3262056_3263052_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYSIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>CP027205.2|AVN02123.1|3263206_3264025_+|pyridoxal-phosphatase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>CP027205.2|AVN02124.1|3264025_3265084_-|molybdenum-import-ATP-binding-protein-ModC
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>CP027205.2|AVN02125.1|3265086_3265776_-|molybdenum-ABC-transporter-permease
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>CP027205.2|AVN02126.1|3265775_3266549_-|molybdate-ABC-transporter-substrate-binding-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVAIFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK
>CP027205.2|AVN02128.1|3266715_3266865_-|multidrug-efflux-pump-accessory-protein-AcrZ
MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH

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Crispr_ID: CP027205_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027205_11

3766520-3766673

Orphan

Consensus_repeat	Method
CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027205_11

>merge|CP027205|11|3766520-3766673|CRISPRCasFinder
CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCTGCGCATAACCGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACCGATCCGGCACAGGTTTGTAGGCATGATAAGACGCG

>CP027205|11|9|3766520-3766673|CRISPRCasFinder
CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	TCAGCGTCGCATCAGGCATCTGCGCATAACCGCCGGATGCGGCGTAAA
CGCCTTATCCGGCCTACCGATCCGGCACAGGTTTGTAGGCATGATAAGACGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP027205.2\|AVN03671.1\|3776711_3779771_-\|RHS-repeat-protein	unknown	unknown	gnl\|CDD\|225750
CP027205.2\|AVN02589.1\|3767375_3768134_-\|peptidoglycan-endopeptidase	unknown	unknown	gnl\|CDD\|223862
CP027205.2\|AVN02596.1\|3776250_3776700_-\|hypothetical-protein	unknown	unknown	unknown
CP027205.2\|AVN02580.1\|3757898_3759143_-\|esterase	unknown	unknown	gnl\|CDD\|235337
CP027205.2\|AVN02592.1\|3770109_3770688_-\|phosphoheptose-isomerase	unknown	unknown	gnl\|CDD\|179012
CP027205.2\|AVN02579.1\|3757439_3757841_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
CP027205.2\|AVN02588.1\|3766702_3767200_-\|transposase	unknown	unknown	gnl\|CDD\|224854
CP027205.2\|AVN02581.1\|3759234_3759693_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
CP027205.2\|AVN02587.1\|3764645_3766385_+\|flagellar-type-III-secretion-system-protein-FlhA	unknown	unknown	gnl\|CDD\|224217
CP027205.2\|AVN02595.1\|3774041_3774812_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|182461
CP027205.2\|AVN02586.1\|3762789_3763845_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP027205.2\|AVN02593.1\|3770927_3773372_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528
CP027205.2\|AVN02594.1\|3773414_3773888_-\|inhibitor-of-vertebrate-lysozyme	unknown	unknown	gnl\|CDD\|182187
CP027205.2\|AVN02585.1\|3762340_3762793_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
CP027205.2\|AVN02583.1\|3761767_3762034_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181972
CP027205.2\|AVN02591.1\|3769136_3769904_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
CP027205.2\|AVN02590.1\|3768425_3769166_+\|transpeptidase	unknown	unknown	gnl\|CDD\|225577
CP027205.2\|AVN02582.1\|3759953_3761411_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
CP027205.2\|AVN03670.1\|3763915_3764704_-\|putative-lateral-flagellar-export/assembly-protein-LafU	unknown	unknown	gnl\|CDD\|235860
CP027205.2\|AVN02578.1\|3756345_3757401_+\|phosphoporin-PhoE	unknown	unknown	gnl\|CDD\|182275

Protein	Function_ID	Function_description	E-value
CP027205.2\|AVN03671.1\|3776711_3779771_-\|RHS-repeat-protein	gnl\|CDD\|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	1.46409e-133
CP027205.2\|AVN02589.1\|3767375_3768134_-\|peptidoglycan-endopeptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	3.3314e-41
CP027205.2\|AVN02580.1\|3757898_3759143_-\|esterase	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP027205.2\|AVN02592.1\|3770109_3770688_-\|phosphoheptose-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	1.61173e-142
CP027205.2\|AVN02579.1\|3757439_3757841_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	1.11584e-87
CP027205.2\|AVN02588.1\|3766702_3767200_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.32036e-43
CP027205.2\|AVN02581.1\|3759234_3759693_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	5.05624e-113
CP027205.2\|AVN02587.1\|3764645_3766385_+\|flagellar-type-III-secretion-system-protein-FlhA	gnl\|CDD\|224217	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion].	0
CP027205.2\|AVN02595.1\|3774041_3774812_+\|amidohydrolase	gnl\|CDD\|182461	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.	0
CP027205.2\|AVN02586.1\|3762789_3763845_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP027205.2\|AVN02593.1\|3770927_3773372_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
CP027205.2\|AVN02594.1\|3773414_3773888_-\|inhibitor-of-vertebrate-lysozyme	gnl\|CDD\|182187	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional.	9.39999e-93
CP027205.2\|AVN02585.1\|3762340_3762793_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	4.77997e-103
CP027205.2\|AVN02583.1\|3761767_3762034_-\|hypothetical-protein	gnl\|CDD\|181972	PRK09588, PRK09588, hypothetical protein; Reviewed.	1.93527e-42
CP027205.2\|AVN02591.1\|3769136_3769904_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	8.29603e-146
CP027205.2\|AVN02590.1\|3768425_3769166_+\|transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.07529e-116
CP027205.2\|AVN02582.1\|3759953_3761411_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
CP027205.2\|AVN03670.1\|3763915_3764704_-\|putative-lateral-flagellar-export/assembly-protein-LafU	gnl\|CDD\|235860	PRK06778, PRK06778, hypothetical protein; Validated.	5.58541e-173
CP027205.2\|AVN02578.1\|3756345_3757401_+\|phosphoporin-PhoE	gnl\|CDD\|182275	PRK10159, PRK10159, phosphoporin PhoE.	0

>CP027205.2|AVN02587.1|3764645_3766385_+|flagellar-type-III-secretion-system-protein-FlhA
MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRISDNGDITHDVRHQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFSYDDITQLHNRLSSMAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSAVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM
>CP027205.2|AVN03670.1|3763915_3764704_-|putative-lateral-flagellar-export/assembly-protein-LafU
MVTTIKLIVNSVSKSERESIIAALHGQSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFECGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRMR
>CP027205.2|AVN02586.1|3762789_3763845_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVILLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL
>CP027205.2|AVN02585.1|3762340_3762793_-|GNAT-family-N-acetyltransferase
MNNIQIRNYQPGDFQQLCAIFIRAVMMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFISRIERHIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQIVKQQHVECRGAWFTNFYMRYKPQH
>CP027205.2|AVN02583.1|3761767_3762034_-|hypothetical-protein
MEWYMGKYIRPLSDAVFTIASDDLWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAFFSVGRFYPARRRGNGAGNRNGPLL
>CP027205.2|AVN02582.1|3759953_3761411_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWLQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDALKSLVNTYQDILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIKSVGHYWTLLTELLKEIPAK
>CP027205.2|AVN02581.1|3759234_3759693_-|xanthine-phosphoribosyltransferase
MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDNYVVDIPQDTWIEQPWDMGVVFVPPISGR
>CP027205.2|AVN02580.1|3757898_3759143_-|esterase
MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTIPHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWATQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEAAQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDDALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVYRNFDKGLQEITGWIEKRLC
>CP027205.2|AVN02579.1|3757439_3757841_-|sigma-factor-binding-protein-Crl
MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPADDFRDEPVKLTA
>CP027205.2|AVN02578.1|3756345_3757401_+|phosphoporin-PhoE
MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYMSDNDSKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF
>CP027205.2|AVN02588.1|3766702_3767200_-|transposase
MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDINAGERIIL
>CP027205.2|AVN02589.1|3767375_3768134_-|peptidoglycan-endopeptidase
MSFMSSFLLGRFLHPGVFSLCVLLPLFASATTSHISFSYAARQRMQNRARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRRWQALAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDQGFDCSGLVFYAYNKILEAKLPRTANEMYHYHRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGENIRVSRLAEPFWQDHFLGARRILTEETIL
>CP027205.2|AVN02590.1|3768425_3769166_+|transpeptidase
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
>CP027205.2|AVN02591.1|3769136_3769904_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTTPNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV
>CP027205.2|AVN02592.1|3770109_3770688_-|phosphoheptose-isomerase
MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVK
>CP027205.2|AVN02593.1|3770927_3773372_+|acyl-CoA-dehydrogenase
MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALAKGLIDKDEAAILVKAEESRLCSINVDDFDPEELATKPVKLPEKVRKVEAA
>CP027205.2|AVN02594.1|3773414_3773888_-|inhibitor-of-vertebrate-lysozyme
MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK
>CP027205.2|AVN02595.1|3774041_3774812_+|amidohydrolase
MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQNDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAIYVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMVALREYREKFPAWQDADEFRLR
>CP027205.2|AVN02596.1|3776250_3776700_-|hypothetical-protein
MMKYLMVLLSLFSGSVLGMGRVNELCGIDSVKTIEIINLPSYVTTLVPLSKEGLNEIYRYKVVVNEISDLYAGKIIDLLQMKYFRKEKYNNIRWGVSIISKGNNKCEIYFDAFGECGSVNGINVCFEKNEMIGWIKKEIPLLSQKIGGL
>CP027205.2|AVN03671.1|3776711_3779771_-|RHS-repeat-protein
MTSPLNSEGRYTEGEGGLKRVVKKEHADGSITRSEYDEAGRLKAQTDAAGRRTEYSLHMASGAVTAVTGPDGRTVRYGYNSQRQVTSVTYPDGLRSSREYDEKGRLTAETSRSGETTRYSYDDPASELPTGIQDATGSTKQMAWSRYGQLLAFTDCSGYTTRYEYDRYGQQIAVHREEGISTYSSYNPRGQLVSQKDAQGREIRYEYSAAGDLTATISPDGKRSTIEYDKRGRPVSVTEGGLTRSMGYDAAGRITVLTNENGSQSTFRYDPVDRLTEQRGFDGRTQRYHYDLTGKLTQSEDEGLITLWHYDASDRITHRTVNGDPAEQWQYDEHGWLTTLSHTCEGHRVSVHYGYDDKGRLTGERQTVENPETGEMLWEHETGHAYSEQGLATRQEPDGLPPVEWLTYGSGYLAGMKLGGTPLVEYTRDRLHRETARSFGGAGSTAGYEQATAYTLTGQLQSRHLNLPQLDCDYTWNDNGQLVRISGPQECREYRYSGTGRLTGVHTTAANLDIDIPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYVYRYDEYGRLAEKTDRIPEGVIRMHDERTHHYHYDSQHRLVFYTRIQHGEPQVESRYLYDPLGRRTGKRVWRRERDLTGWMSLSRKPEETWYGWDGDRLTTVQTQQTRIQTVYQPGSFTPLLRIETENGEQAKARHRSLAEVLQEDTGVTLPAELAVMLGRLERELRQGSVSEESQQWLAQCGLTAEQMAAQLEAEYIPERKLHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGEESAQHLQQSLRLPGQQYDEESGLYYNRNRYYDPLQGRYITQDPIGLRGEWNLYKYPLNPVRFIDSLGLKFHVNGDPSDFNQAVEYLKQDSQMKETIDFLSSSEETINIEYIEGTNVRFNSNNMAIYWNSRASLFCSTELNSKSQSPALGLGHEFAHAQYYLLDKENFMALLSRTDKKYENKEEARVITIIESRAAKTLGECTRGAHSGLPFYRVDGPLQTMKITGTPE

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Crispr_ID: CP027205_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027205_12

3979967-3980099

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of CP027205_12

>merge|CP027205|12|3979967-3980099|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCCTCACCAATATTGAAAACATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGGATCACCAATATTGAAAG

>CP027205|12|5|3979967-3980099|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTC
CTCACCAATATTGAAAA	CATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP027205.2\|AVN02771.1\|3978149_3979091_-\|protein-FixB	unknown	unknown	gnl\|CDD\|235120
CP027205.2\|AVN02766.1\|3972646_3974509_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
CP027205.2\|AVN02767.1\|3974501_3975032_-\|glutathione-regulated-potassium-efflux-system-ancillary-protein-KefF	unknown	unknown	gnl\|CDD\|234852
CP027205.2\|AVN02763.1\|3970671_3971049_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP027205.2\|AVN02781.1\|3988274_3991496_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
CP027205.2\|AVN02782.1\|3991513_3992662_-\|carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
CP027205.2\|AVN02778.1\|3986909_3987500_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
CP027205.2\|AVN02776.1\|3984456_3986010_+\|ATP-dependent-acyl-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
CP027205.2\|AVN02764.1\|3971055_3971898_+\|diadenosine-tetraphosphatase	unknown	unknown	gnl\|CDD\|273208
CP027205.2\|AVN02769.1\|3976528_3976816_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
CP027205.2\|AVN02765.1\|3971975_3972455_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
CP027205.2\|AVN02775.1\|3983165_3984383_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
CP027205.2\|AVN02777.1\|3986118_3986904_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
CP027205.2\|AVN02774.1\|3981894_3983037_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
CP027205.2\|AVN02772.1\|3979105_3979876_-\|protein-FixA	unknown	unknown	gnl\|CDD\|179569
CP027205.2\|AVN02773.1\|3980349_3981864_+\|L-carnitine/gamma-butyrobetaine-antiporter	unknown	unknown	gnl\|CDD\|179568
CP027205.2\|AVN02768.1\|3975139_3976471_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
CP027205.2\|AVN02770.1\|3976812_3978099_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
CP027205.2\|AVN02783.1\|3993117_3993939_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
CP027205.2\|AVN02779.1\|3987618_3988014_-\|transcriptional-activatory-protein-CaiF	unknown	unknown	gnl\|CDD\|183154

Protein	Function_ID	Function_description	E-value
CP027205.2\|AVN02771.1\|3978149_3979091_-\|protein-FixB	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
CP027205.2\|AVN02766.1\|3972646_3974509_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
CP027205.2\|AVN02767.1\|3974501_3975032_-\|glutathione-regulated-potassium-efflux-system-ancillary-protein-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
CP027205.2\|AVN02763.1\|3970671_3971049_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
CP027205.2\|AVN02781.1\|3988274_3991496_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
CP027205.2\|AVN02782.1\|3991513_3992662_-\|carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
CP027205.2\|AVN02778.1\|3986909_3987500_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	4.44962e-142
CP027205.2\|AVN02776.1\|3984456_3986010_+\|ATP-dependent-acyl-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
CP027205.2\|AVN02764.1\|3971055_3971898_+\|diadenosine-tetraphosphatase	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP027205.2\|AVN02769.1\|3976528_3976816_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	2.23442e-69
CP027205.2\|AVN02765.1\|3971975_3972455_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
CP027205.2\|AVN02775.1\|3983165_3984383_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
CP027205.2\|AVN02777.1\|3986118_3986904_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	1.51953e-178
CP027205.2\|AVN02774.1\|3981894_3983037_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
CP027205.2\|AVN02772.1\|3979105_3979876_-\|protein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	6.8619e-170
CP027205.2\|AVN02773.1\|3980349_3981864_+\|L-carnitine/gamma-butyrobetaine-antiporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
CP027205.2\|AVN02768.1\|3975139_3976471_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4298e-59
CP027205.2\|AVN02770.1\|3976812_3978099_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
CP027205.2\|AVN02783.1\|3993117_3993939_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	9.17052e-141
CP027205.2\|AVN02779.1\|3987618_3988014_-\|transcriptional-activatory-protein-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	1.42176e-74

>CP027205.2|AVN02772.1|3979105_3979876_-|protein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>CP027205.2|AVN02771.1|3978149_3979091_-|protein-FixB
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>CP027205.2|AVN02770.1|3976812_3978099_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>CP027205.2|AVN02769.1|3976528_3976816_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQVLELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>CP027205.2|AVN02768.1|3975139_3976471_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>CP027205.2|AVN02767.1|3974501_3975032_-|glutathione-regulated-potassium-efflux-system-ancillary-protein-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>CP027205.2|AVN02766.1|3972646_3974509_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGCGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>CP027205.2|AVN02765.1|3971975_3972455_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>CP027205.2|AVN02764.1|3971055_3971898_+|diadenosine-tetraphosphatase
MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGEAAAS
>CP027205.2|AVN02763.1|3970671_3971049_+|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>CP027205.2|AVN02773.1|3980349_3981864_+|L-carnitine/gamma-butyrobetaine-antiporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>CP027205.2|AVN02774.1|3981894_3983037_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>CP027205.2|AVN02775.1|3983165_3984383_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLSTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>CP027205.2|AVN02776.1|3984456_3986010_+|ATP-dependent-acyl-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLLTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>CP027205.2|AVN02777.1|3986118_3986904_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVNQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>CP027205.2|AVN02778.1|3986909_3987500_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCNTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFIKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>CP027205.2|AVN02779.1|3987618_3988014_-|transcriptional-activatory-protein-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>CP027205.2|AVN02781.1|3988274_3991496_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>CP027205.2|AVN02782.1|3991513_3992662_-|carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>CP027205.2|AVN02783.1|3993117_3993939_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKEGGLFDMRDVLDLNSL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP027205_9	9.2\|3244374\|26\|CP027205\|PILER-CR	3244374-3244399	26	CP027205.2	2743271-2743296	0	1.0

1. spacer 9.2|3244374|26|CP027205|PILER-CR matches to position: 2743271-2743296, mismatch: 0, identity: 1.0

atttacctctttcaggtaaactttat	CRISPR spacer
atttacctctttcaggtaaactttat	Protospacer
**************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027205_8	8.1\|2949565\|40\|CP027205\|CRISPRCasFinder	2949565-2949604	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
CP027205_9	9.1\|3244327\|25\|CP027205\|PILER-CR	3244327-3244351	25	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44572-44596	0	1.0
CP027205_9	9.2\|3244374\|26\|CP027205\|PILER-CR	3244374-3244399	26	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37604-37629	0	1.0
CP027205_9	9.2\|3244374\|26\|CP027205\|PILER-CR	3244374-3244399	26	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37887-37912	0	1.0
CP027205_12	12.1\|3979984\|42\|CP027205\|PILER-CR	3979984-3980025	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	0	1.0
CP027205_9	9.2\|3244374\|26\|CP027205\|PILER-CR	3244374-3244399	26	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44524-44549	1	0.962
CP027205_12	12.2\|3980043\|40\|CP027205\|PILER-CR	3980043-3980082	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	1	0.975
CP027205_7	7.1\|2228625\|38\|CP027205\|CRISPRCasFinder	2228625-2228662	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP027205_9	9.1\|3244327\|25\|CP027205\|PILER-CR	3244327-3244351	25	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37652-37676	2	0.92
CP027205_9	9.1\|3244327\|25\|CP027205\|PILER-CR	3244327-3244351	25	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37935-37959	2	0.92
CP027205_11	11.1\|3766573\|48\|CP027205\|CRISPRCasFinder	3766573-3766620	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4089-4136	3	0.938
CP027205_11	11.1\|3766573\|48\|CP027205\|CRISPRCasFinder	3766573-3766620	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4088-4135	3	0.938
CP027205_11	11.1\|3766573\|48\|CP027205\|CRISPRCasFinder	3766573-3766620	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4088-4135	3	0.938
CP027205_11	11.1\|3766573\|48\|CP027205\|CRISPRCasFinder	3766573-3766620	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4088-4135	3	0.938
CP027205_9	9.2\|3244374\|26\|CP027205\|PILER-CR	3244374-3244399	26	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	35661-35686	4	0.846
CP027205_1	1.1\|636683\|42\|CP027205\|CRISPRCasFinder	636683-636724	42	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30214-30255	7	0.833
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_MG299151	Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence	51276-51307	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_KY471628	Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence	45716-45747	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_MG299131	Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence	51276-51307	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_KY471629	Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence	45716-45747	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_MG299133	Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence	51276-51307	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_MG299128	Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence	51276-51307	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_MG299147	Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence	51276-51307	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NC_018995	Escherichia coli plasmid pHUSEC41-1, complete sequence	29015-29046	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	78292-78323	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	39563-39594	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	KU932021	Escherichia coli plasmid pEC3I, complete sequence	51902-51933	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_CP024154	Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence	18560-18591	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NC_011754	Escherichia coli ED1a plasmid pECOED, complete sequence	49240-49271	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	81434-81465	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_LR213460	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3	28916-28947	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_MH287044	Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence	36182-36213	7	0.781
CP027205_4	4.15\|1053705\|32\|CP027205\|CRISPRCasFinder,CRT	1053705-1053736	32	NZ_MH618673	Escherichia coli strain 838B plasmid p838B-R, complete sequence	32230-32261	7	0.781
CP027205_1	1.1\|636683\|42\|CP027205\|CRISPRCasFinder	636683-636724	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24899-24940	8	0.81
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_MG299151	Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence	51275-51307	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_KY471628	Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence	45715-45747	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_MG299131	Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence	51275-51307	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_KY471629	Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence	45715-45747	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_MG299133	Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence	51275-51307	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_MG299128	Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence	51275-51307	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_MG299147	Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence	51275-51307	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NC_018995	Escherichia coli plasmid pHUSEC41-1, complete sequence	29014-29046	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	78291-78323	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_CP024154	Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence	18559-18591	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NC_011754	Escherichia coli ED1a plasmid pECOED, complete sequence	49239-49271	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	81433-81465	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_LR213460	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3	28915-28947	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_MH287044	Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence	36181-36213	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_MH618673	Escherichia coli strain 838B plasmid p838B-R, complete sequence	32229-32261	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	39563-39595	8	0.758
CP027205_4	4.7\|1053704\|33\|CP027205\|PILER-CR	1053704-1053736	33	KU932021	Escherichia coli plasmid pEC3I, complete sequence	51902-51934	8	0.758
CP027205_4	4.14\|1053644\|32\|CP027205\|CRISPRCasFinder,CRT	1053644-1053675	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1417960-1417991	8	0.75
CP027205_5	5.3\|1076363\|32\|CP027205\|PILER-CR,CRISPRCasFinder,CRT	1076363-1076394	32	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	148991-149022	8	0.75
CP027205_5	5.3\|1076363\|32\|CP027205\|PILER-CR,CRISPRCasFinder,CRT	1076363-1076394	32	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	530640-530671	8	0.75
CP027205_5	5.4\|1076424\|32\|CP027205\|PILER-CR,CRISPRCasFinder,CRT	1076424-1076455	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	532343-532374	8	0.75
CP027205_1	1.1\|636683\|42\|CP027205\|CRISPRCasFinder	636683-636724	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24786-24827	9	0.786
CP027205_5	5.3\|1076363\|32\|CP027205\|PILER-CR,CRISPRCasFinder,CRT	1076363-1076394	32	NZ_CP036297	Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence	14953-14984	9	0.719
CP027205_5	5.3\|1076363\|32\|CP027205\|PILER-CR,CRISPRCasFinder,CRT	1076363-1076394	32	NZ_CP036288	Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence	14983-15014	9	0.719
CP027205_5	5.3\|1076363\|32\|CP027205\|PILER-CR,CRISPRCasFinder,CRT	1076363-1076394	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	3454-3485	9	0.719
CP027205_5	5.4\|1076424\|32\|CP027205\|PILER-CR,CRISPRCasFinder,CRT	1076424-1076455	32	NZ_CP040723	Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence	35740-35771	9	0.719
CP027205_4	4.9\|1053339\|32\|CP027205\|CRISPRCasFinder,CRT	1053339-1053370	32	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	51062-51093	10	0.688

1. spacer 8.1|2949565|40|CP027205|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 9.1|3244327|25|CP027205|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 0, identity: 1.0

gtgcctttacctgatttgggtaaac	CRISPR spacer
gtgcctttacctgatttgggtaaac	Protospacer
*************************

3. spacer 9.2|3244374|26|CP027205|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

atttacctctttcaggtaaactttat	CRISPR spacer
atttacctctttcaggtaaactttat	Protospacer
**************************

4. spacer 9.2|3244374|26|CP027205|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

atttacctctttcaggtaaactttat	CRISPR spacer
atttacctctttcaggtaaactttat	Protospacer
**************************

5. spacer 12.1|3979984|42|CP027205|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

6. spacer 9.2|3244374|26|CP027205|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.962

atttacctctttcaggtaaactttat	CRISPR spacer
atttacctctttaaggtaaactttat	Protospacer
************ *************

7. spacer 12.2|3980043|40|CP027205|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *****************************

8. spacer 7.1|2228625|38|CP027205|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

9. spacer 9.1|3244327|25|CP027205|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.92

gtgcctttacctgatttgggtaaac	CRISPR spacer
acgcctttacctgatttgggtaaac	Protospacer
..***********************

10. spacer 9.1|3244327|25|CP027205|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.92

gtgcctttacctgatttgggtaaac	CRISPR spacer
acgcctttacctgatttgggtaaac	Protospacer
..***********************

11. spacer 11.1|3766573|48|CP027205|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

12. spacer 11.1|3766573|48|CP027205|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

13. spacer 11.1|3766573|48|CP027205|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

14. spacer 11.1|3766573|48|CP027205|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

15. spacer 9.2|3244374|26|CP027205|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.846

atttacctctttcaggtaaactttat	CRISPR spacer
aggtatctcattcaggtaaactttat	Protospacer
*  **.*** ****************

16. spacer 1.1|636683|42|CP027205|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.833

acagcagtcggatgcggcgtaaacaccttatctgacctacgt	CRISPR spacer
acaaatgccggatgcggcgtaaacgccttatctggcctacgc	Protospacer
***.  *.****************.*********.******.

17. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

18. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

19. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

20. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

21. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

22. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

23. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

24. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

25. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

26. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

27. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

28. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

29. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

30. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

31. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

32. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

33. spacer 4.15|1053705|32|CP027205|CRISPRCasFinder,CRT matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

34. spacer 1.1|636683|42|CP027205|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 8, identity: 0.81

acagcagtcggatgcggcgtaaacaccttatctgacctacgt	CRISPR spacer
attgatgtcggatgcggcgtaaacgccttatccgacctacaa	Protospacer
*. *  ******************.*******.*******.

35. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

36. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

37. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

38. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

39. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

40. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

41. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

42. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

43. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

44. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

45. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

46. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

47. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

48. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

49. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

50. spacer 4.7|1053704|33|CP027205|PILER-CR matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

51. spacer 4.7|1053704|33|CP027205|PILER-CR matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatatccagggctgggctggaggcagacggc--	CRISPR spacer
acgttatccagggctgagctgcaggcag--ggcca	Protospacer
. . ************.**** ******  ***

52. spacer 4.14|1053644|32|CP027205|CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcaacgcgctcagacgttgcgtgagtgaacca	CRISPR spacer
acaacgcggtcggacgttgcgtgattaccccg	Protospacer
 ******* **.************ *.  **.

53. spacer 5.3|1076363|32|CP027205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
gggtacggctggcgaaggaggcggctgcggaa	Protospacer
  * ************* ***.*****  * *

54. spacer 5.3|1076363|32|CP027205|PILER-CR,CRISPRCasFinder,CRT matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
ccgaacaggtggcgaagcaggtgatgggccag	Protospacer
******.* **************.. ***  .

55. spacer 5.4|1076424|32|CP027205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.75

gtttaccgccccgcagaggcgctggcagatcc	CRISPR spacer
catcatcctcccgcagatgcgctggccgatcc	Protospacer
  *.*.* .******** ******** *****

56. spacer 1.1|636683|42|CP027205|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.786

acagcagtcggatgcggcgtaaacaccttatctgacctacgt	CRISPR spacer
gttgatgtcggatgcggcgtaaacgccttatccgacctacaa	Protospacer
.. *  ******************.*******.*******.

57. spacer 5.3|1076363|32|CP027205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036297 (Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgtg	Protospacer
   ..*.******** ********** ****.

58. spacer 5.3|1076363|32|CP027205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036288 (Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
agcggcagctggcgatgcaggtggcttgcgtg	Protospacer
   ..*.******** ********** ****.

59. spacer 5.3|1076363|32|CP027205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.719

ccgaacggctggcgaagcaggtggctggcgta	CRISPR spacer
ttgcgcagctggcgcagcaggtggctgccgag	Protospacer
..* .*.******* ************ ** .

60. spacer 5.4|1076424|32|CP027205|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040723 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

gtttaccgccccgcagaggcgctggcagatcc	CRISPR spacer
cgagaccgcctcgccgaggcgctggcagcgac	Protospacer
    ******.*** *************   *

61. spacer 4.9|1053339|32|CP027205|CRISPRCasFinder,CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 10, identity: 0.688

tccacgctgtaacggccatcattaagtttagt	CRISPR spacer
ccgctgctgtgacgcccatcattaagttactc	Protospacer
.*  .*****.*** *************   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1083970 : 1097153

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVN00123.1\|1083970_1084732_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.0e-59	48.0
AVN00124.1\|1084725_1085352_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
AVN00125.1\|1085491_1086631_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
AVN00126.1\|1086693_1087686_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
AVN00127.1\|1087779_1089144_-	GntP family transporter	NA	NA	NA	NA
AVN00128.1\|1089232_1090009_-	HPr family phosphocarrier protein	NA	NA	NA	NA
AVN00129.1\|1090013_1090652_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
AVN00130.1\|1090648_1091911_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
AVN00131.1\|1091907_1092816_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
AVN00132.1\|1093011_1093779_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
AVN00133.1\|1093829_1094486_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	8.0e-49	46.3
AVN00134.1\|1094591_1097153_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6

DBSCAN-SWA_2

1458101 : 1503041

Enterobacteria_phage(48.28%)

lysis,tail,head,portal,coat,protease,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVN00454.1\|1458101_1459535_-	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	7.0e-29	25.4
AVN00455.1\|1459750_1460665_+	aminoimidazole riboside kinase	NA	NA	NA	NA
AVN00456.1\|1462513_1462714_-	excisionase	K7P7V0	Enterobacteria_phage	2.7e-32	98.5
AVN00457.1\|1463099_1463267_-	hypothetical protein	A5VWB7	Enterobacteria_phage	2.9e-27	98.2
AVN00458.1\|1463302_1463614_-	hypothetical protein	A0A1I9LJL8	Stx_converting_phage	1.1e-53	97.1
AVN00459.1\|1463788_1464406_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	9.2e-55	56.2
AVN00460.1\|1464407_1464833_-	ead/Ea22-like family protein	A0A077SLK5	Escherichia_phage	6.4e-31	85.5
AVN00461.1\|1464819_1465053_-	hypothetical protein	NA	NA	NA	NA
AVN00462.1\|1465049_1465610_-	hypothetical protein	Q76H44	Enterobacteria_phage	2.3e-60	69.4
AVN00463.1\|1465606_1465771_-	DUF2737 family protein	A0A2I6PID4	Escherichia_phage	2.3e-21	96.3
AVN00464.1\|1465767_1466058_-	hypothetical protein	K7P7M4	Enterobacteria_phage	3.7e-46	100.0
AVN00465.1\|1466068_1466362_-	DUF2856 family protein	G8C7L1	Escherichia_phage	2.5e-50	99.0
AVN00466.1\|1466375_1466882_-	single-stranded DNA-binding protein	K7PHK1	Enterobacteria_phage	6.8e-80	98.8
AVN00467.1\|1466878_1467346_-	hypothetical protein	A0A2I7QWC6	Vibrio_phage	1.2e-46	62.0
AVN00468.1\|1467346_1468054_-	recombinase	K7PKU3	Enterobacteria_phage	2.2e-137	99.6
AVN00469.1\|1468554_1468866_-	superinfection exclusion protein	A0A0N7BTN9	Escherichia_phage	4.6e-55	98.1
AVN00470.1\|1469041_1469293_-	hypothetical protein	A4KWV4	Enterobacteria_phage	5.6e-43	100.0
AVN00471.1\|1469355_1469580_-	hypothetical protein	K7PJZ1	Enterobacterial_phage	8.8e-32	98.6
AVN00472.1\|1469583_1469847_-	hypothetical protein	K7PKE4	Enterobacteria_phage	1.7e-29	100.0
AVN00473.1\|1470214_1470583_-	hypothetical protein	K7PJJ3	Enterobacteria_phage	1.3e-56	100.0
AVN00474.1\|1470600_1471317_-	helix-turn-helix domain-containing protein	K7PGR7	Enterobacteria_phage	9.2e-123	100.0
AVN00475.1\|1471423_1471618_+	Cro/Cl family transcriptional regulator	K7PLQ6	Enterobacteria_phage	1.8e-28	100.0
AVN03570.1\|1471726_1472005_+	hypothetical protein	K7P7A2	Enterobacteria_phage	8.1e-43	97.8
AVN00476.1\|1472039_1472186_+	DUF2740 domain-containing protein	Q687G5	Enterobacteria_phage	1.1e-19	100.0
AVN00477.1\|1472178_1473039_+	replication protein	K7PL20	Enterobacteria_phage	4.3e-159	99.7
AVN00478.1\|1473146_1475027_+	bifunctional DNA primase/helicase	K7PK08	Enterobacteria_phage	0.0e+00	99.7
AVN00479.1\|1475086_1475545_+	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.3e-81	100.0
AVN00480.1\|1475541_1476069_+	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
AVN00481.1\|1476065_1476242_+	NinE family protein	A5VW90	Enterobacteria_phage	4.6e-28	100.0
AVN00482.1\|1476244_1476604_+	DUF2591 domain-containing protein	K7PH48	Enterobacterial_phage	7.5e-41	73.3
AVN00483.1\|1476596_1476773_+	protein ninF	Q76H71	Enterobacteria_phage	1.5e-26	98.3
AVN00484.1\|1476765_1477377_+	recombination protein NinG	A0A2D1GLP2	Escherichia_phage	8.7e-98	98.0
AVN00485.1\|1477373_1477580_+	protein ninH	Q716C0	Shigella_phage	7.3e-33	100.0
AVN00486.1\|1477557_1478229_+	serine/threonine protein phosphatase	Q716B9	Shigella_phage	2.4e-133	99.1
AVN00487.1\|1478219_1478738_+	DUF1133 family protein	Q716B8	Shigella_phage	5.0e-94	97.7
AVN00488.1\|1479334_1479658_+\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
AVN00489.1\|1479641_1480118_+	lysozyme	K7PKV2	Enterobacteria_phage	1.7e-88	100.0
AVN00490.1\|1480114_1480552_+\|lysis	lysis protein	Q716B4	Shigella_phage	2.5e-70	97.2
AVN00491.1\|1480539_1480692_+	hypothetical protein	C6ZR68	Salmonella_phage	1.2e-21	100.0
AVN00492.1\|1480893_1481418_+	Rha family transcriptional regulator	G8C7W4	Escherichia_phage	4.5e-87	94.2
AVN00493.1\|1481718_1481961_+	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.4e-35	98.8
AVN03571.1\|1481996_1482485_+	DNA-packaging protein	A0A0M3ULC0	Salmonella_phage	5.0e-88	100.0
AVN00494.1\|1482462_1483959_+\|terminase	terminase	A0A2D1GLW6	Escherichia_phage	8.2e-283	93.8
AVN00495.1\|1483958_1486160_+\|portal	portal protein	A0A088CQ69	Enterobacteria_phage	0.0e+00	96.8
AVN00496.1\|1486250_1487144_+	scaffolding protein	A0A088CPT0	Enterobacteria_phage	5.9e-127	97.3
AVN00497.1\|1487162_1488416_+\|coat	coat protein	A0A088CQ56	Enterobacteria_phage	2.9e-233	98.1
AVN00498.1\|1488457_1488646_+	hypothetical protein	A0A088CPR7	Enterobacteria_phage	6.5e-28	98.4
AVN00499.1\|1488626_1489088_+\|head	head DNA stabilization protein	A5VW70	Enterobacteria_phage	7.1e-84	100.0
AVN00500.1\|1489097_1490516_+	hypothetical protein	A0A2D1GM00	Escherichia_phage	9.2e-276	99.2
AVN00501.1\|1490518_1491013_+	HNH endonuclease	A0A1U9HWQ1	Salmonella_phage	5.1e-32	46.0
AVN00502.1\|1491012_1491714_+\|tail	phage tail protein	G5DA78	Enterobacteria_phage	2.5e-117	98.3
AVN00503.1\|1491713_1492169_+	DUF2824 family protein	A0A2D1GLX4	Escherichia_phage	8.8e-87	99.3
AVN00504.1\|1492171_1492864_+	DNA transfer protein	A5VW66	Enterobacteria_phage	4.4e-114	97.8
AVN00505.1\|1492874_1494260_+	acyltransferase	I6RSG0	Salmonella_phage	6.3e-245	95.4
AVN00506.1\|1494259_1496077_+	DNA transfer protein	A0A2H4FNB8	Salmonella_phage	3.2e-289	97.5
AVN00507.1\|1496094_1496283_-	hypothetical protein	NA	NA	NA	NA
AVN00508.1\|1496313_1496679_+	hypothetical protein	A0A192Y6W5	Salmonella_phage	2.1e-67	100.0
AVN00509.1\|1496692_1496917_-	hypothetical protein	NA	NA	NA	NA
AVN00510.1\|1496942_1497128_+	hypothetical protein	I6RSG3	Salmonella_phage	1.8e-06	65.6
AVN00511.1\|1497205_1497742_-\|protease	Clp protease	NA	NA	NA	NA
AVN00512.1\|1497741_1497978_-	Arc family DNA-binding protein	G0ZNE9	Cronobacter_phage	4.5e-18	61.0
AVN00513.1\|1498066_1498240_+	Arc family DNA-binding protein	NA	NA	NA	NA
AVN00514.1\|1498302_1499205_+	phage antirepressor Ant	Q0H8C7	Salmonella_phage	4.3e-170	97.3
AVN00515.1\|1501883_1503041_-	DUF4102 domain-containing protein	A5VW56	Enterobacteria_phage	4.8e-222	99.5

DBSCAN-SWA_3

1750688 : 1760130

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVN00736.1\|1750688_1751615_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	30.8
AVN00737.1\|1751619_1752351_+	ABC transporter permease	NA	NA	NA	NA
AVN00738.1\|1752331_1752439_-	protein YohO	NA	NA	NA	NA
AVN00739.1\|1752498_1753230_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
AVN00740.1\|1753451_1755137_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AVN00741.1\|1755133_1755853_+	DNA-binding response regulator	NA	NA	NA	NA
AVN00742.1\|1755899_1756370_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
AVN00743.1\|1756410_1756872_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
AVN00744.1\|1756996_1758997_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.3
AVN00745.1\|1758993_1760130_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	3.2e-162	97.4

DBSCAN-SWA_4

2314426 : 2328529

Escherichia_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVN01257.1\|2314426_2316853_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.7e-214	49.0
AVN01258.1\|2317051_2317357_-	DUF1161 domain-containing protein	NA	NA	NA	NA
AVN01259.1\|2317464_2318175_+	YnfC family lipoprotein	NA	NA	NA	NA
AVN01260.1\|2318177_2318738_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
AVN01261.1\|2318772_2319114_-	DUF1283 family protein	NA	NA	NA	NA
AVN01262.1\|2319248_2319575_+	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
AVN01264.1\|2319780_2320995_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
AVN01265.1\|2321006_2322026_+	starvation-sensing protein RspB	E3SJ82	Synechococcus_phage	4.3e-17	26.2
AVN01266.1\|2322083_2322194_+	transporter	NA	NA	NA	NA
AVN01267.1\|2322213_2323509_-	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	6.7e-156	62.3
AVN01268.1\|2323528_2323780_-	DNA-binding protein	S4TND0	Salmonella_phage	2.2e-15	50.0
AVN01269.1\|2323852_2326324_-	exonuclease	K7PLW7	Enterobacteria_phage	6.1e-57	59.8
AVN01270.1\|2326417_2326609_-	DUF1482 family protein	NA	NA	NA	NA
AVN01271.1\|2326605_2326794_-	division inhibition protein DicB	NA	NA	NA	NA
AVN01272.1\|2326877_2327120_+	hypothetical protein	NA	NA	NA	NA
AVN01273.1\|2327046_2328066_+	hypothetical protein	U5P0A0	Shigella_phage	1.0e-58	63.9
AVN01274.1\|2328106_2328529_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.0e-61	85.6

DBSCAN-SWA_5

2739435 : 2750213

Enterobacteria_phage(40.0%)

integrase

attL 2737408:2737431|attR 2748916:2748939

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2737408:2737431	attL	NA	NA	NA	NA
AVN01636.1\|2739435_2741391_-	AAA family ATPase	K4I1H4	Acidithiobacillus_phage	7.5e-26	28.6
AVN01637.1\|2743755_2744295_-	regulator	M9NZI6	Enterobacteria_phage	7.5e-61	65.6
AVN01638.1\|2744477_2744789_+	recombinase	A0A0N7KZJ3	Stx2-converting_phage	2.4e-43	100.0
AVN01639.1\|2744785_2745466_+	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	5.1e-131	98.7
AVN03625.1\|2745462_2745621_+	DUF1317 family protein	M1FJ61	Enterobacteria_phage	6.4e-21	88.5
AVN01640.1\|2745617_2746682_+	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	1.7e-133	64.8
AVN01641.1\|2746835_2747054_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	3.2e-34	94.4
AVN01642.1\|2747101_2747341_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	3.9e-38	94.9
AVN01643.1\|2747480_2747717_+	excisionase	NA	NA	NA	NA
AVN01644.1\|2747706_2748849_+\|integrase	integrase	O21929	Phage_21	8.1e-206	99.7
AVN01645.1\|2748962_2750213_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
2748916:2748939	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2879020 : 2923673

Stx2-converting_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVN01773.1\|2879020_2879479_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	5.5e-12	31.5
AVN01774.1\|2880207_2881353_-	class C beta-lactamase CMY-2	NA	NA	NA	NA
AVN01775.1\|2881676_2882939_-\|transposase	IS1380 family transposase ISEc9	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
AVN01776.1\|2883204_2884533_-\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
AVN01777.1\|2884764_2884944_-	hypothetical protein	NA	NA	NA	NA
AVN01778.1\|2884906_2885083_-	DUF3927 domain-containing protein	NA	NA	NA	NA
AVN01779.1\|2885326_2886109_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.7e-138	99.2
AVN01780.1\|2887141_2887285_-	chemotaxis protein	NA	NA	NA	NA
AVN01781.2\|2887838_2889377_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	7.1e-298	99.2
AVN01782.2\|2889426_2889774_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	1.1e-60	99.1
AVN03635.1\|2889770_2890151_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.2e-65	99.2
AVN01783.1\|2890605_2891619_-	DUF4432 domain-containing protein	NA	NA	NA	NA
AVN01784.1\|2891630_2892947_-	L-fucose:H+ symporter permease	NA	NA	NA	NA
AVN01785.1\|2892974_2893895_-	ribokinase	NA	NA	NA	NA
AVN01786.1\|2894200_2894983_+	DeoR family transcriptional regulator	NA	NA	NA	NA
AVN01787.1\|2894984_2895083_-	acetolactate synthase	NA	NA	NA	NA
AVN03636.1\|2895210_2895411_-	hypothetical protein	NA	NA	NA	NA
AVN01788.1\|2895695_2896924_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.7e-170	96.0
AVN01789.1\|2897100_2897340_+	hypothetical protein	NA	NA	NA	NA
AVN01790.1\|2897526_2898162_+	galactonate dehydratase	NA	NA	NA	NA
AVN01791.1\|2898243_2898681_+	hypothetical protein	NA	NA	NA	NA
AVN01792.1\|2898743_2899568_-	DeoR family transcriptional regulator	NA	NA	NA	NA
AVN01794.1\|2899816_2900155_+	aldolase	NA	NA	NA	NA
AVN01795.1\|2900268_2901840_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA
AVN01796.1\|2901851_2903027_+	putative C-S lyase	NA	NA	NA	NA
AVN01797.1\|2903040_2904930_+	enterotoxin	NA	NA	NA	NA
AVN03637.1\|2905098_2905305_-	methyltransferase	NA	NA	NA	NA
AVN01798.1\|2905409_2906846_-	hypothetical protein	NA	NA	NA	NA
AVN03638.1\|2906842_2911801_-	nuclease	NA	NA	NA	NA
AVN01799.1\|2912475_2913039_-	inovirus Gp2 family protein	NA	NA	NA	NA
AVN01800.1\|2913859_2915293_-	DUF3987 domain-containing protein	NA	NA	NA	NA
AVN01801.1\|2915511_2915709_-	DUF3987 domain-containing protein	NA	NA	NA	NA
AVN01802.1\|2915953_2916250_-	AlpA family transcriptional regulator	NA	NA	NA	NA
AVN01803.1\|2917361_2919179_+	hypothetical protein	NA	NA	NA	NA
AVN01804.1\|2919365_2920568_-	DUF4102 domain-containing protein	A0A1B0VMI6	Pseudomonas_phage	2.9e-44	34.4
AVN01805.1\|2920934_2921921_-	hypothetical protein	NA	NA	NA	NA
AVN03639.1\|2921917_2922241_-	ACP S-malonyltransferase	NA	NA	NA	NA
AVN01806.1\|2922511_2923673_+\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-51	40.6

DBSCAN-SWA_7

3137341 : 3147435

Salmonella_phage(90.0%)

transposase,integrase

attL 3137011:3137024|attR 3147477:3147490

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3137011:3137024	attL	NA	NA	NA	NA
AVN03647.1\|3137341_3137530_-	hypothetical protein	A0A1S6L006	Salmonella_phage	2.0e-24	95.2
AVN01986.1\|3137688_3140082_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	93.7
AVN01987.1\|3140078_3140936_-	DNA adenine methylase	E5G6L8	Salmonella_phage	9.5e-159	95.8
AVN01988.1\|3140932_3141160_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	7.8e-36	98.7
AVN01989.1\|3141159_3141393_-	DUF2732 family protein	E5G6L6	Salmonella_phage	1.9e-32	97.4
AVN01990.1\|3141460_3141802_-	hypothetical protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
AVN01991.1\|3141919_3142216_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.9e-21	88.5
AVN01992.1\|3142223_3142733_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.3e-86	98.2
AVN01993.1\|3142765_3142987_-	regulator	NA	NA	NA	NA
AVN01994.1\|3143132_3144011_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.4
AVN01995.1\|3144022_3144967_+	hypothetical protein	NA	NA	NA	NA
AVN01996.1\|3145087_3146308_+\|transposase	ISL3-like element ISKox3 family transposase	NA	NA	NA	NA
AVN01997.1\|3146382_3147435_+\|integrase	site-specific integrase	A0A218M4I3	Erwinia_phage	1.4e-106	57.0
3147477:3147490	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3227018 : 3254222

Enterobacteria_phage(47.06%)

lysis,tail,integrase,capsid,terminase

attL 3228934:3228948|attR 3254296:3254310

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVN02067.1\|3227018_3228308_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	3.4e-19	27.1
AVN02068.1\|3228366_3228843_+	kinase inhibitor	NA	NA	NA	NA
3228934:3228948	attL	NA	NA	NA	NA
AVN02070.1\|3229588_3230920_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.4e-20	37.1
AVN02071.1\|3230993_3231170_-\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	9.4e-21	84.5
AVN03651.1\|3231361_3231988_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AVN02072.1\|3231932_3232070_-\|capsid	nucleocapsid protein	NA	NA	NA	NA
AVN02073.1\|3232878_3233439_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	4.9e-87	98.8
AVN02075.1\|3233827_3234061_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	7.3e-21	94.4
AVN02076.1\|3234117_3234528_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.3e-52	76.3
AVN02077.1\|3234573_3234738_+	hypothetical protein	NA	NA	NA	NA
AVN02078.1\|3234879_3235032_-	hypothetical protein	K7PKL2	Enterobacteria_phage	3.1e-20	96.0
AVN02079.1\|3235019_3235487_-\|lysis	lysis protein	A0A2D1GLQ7	Escherichia_phage	1.6e-75	96.8
AVN02080.1\|3235483_3235981_-	lysozyme	A0A1B5FP97	Escherichia_phage	1.6e-89	97.0
AVN02081.1\|3235980_3236196_-\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.2e-33	98.6
AVN02082.1\|3236383_3236971_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AVN02083.1\|3236979_3237114_-	AraC family transcriptional regulator	NA	NA	NA	NA
AVN02084.1\|3237465_3238425_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
AVN02085.1\|3238617_3239142_+	hypothetical protein	A0A1W6JNX6	Morganella_phage	1.1e-48	54.1
AVN02086.1\|3239297_3239675_-	antitermination protein	Q777W5	Enterobacteria_phage	7.3e-55	84.2
AVN02087.1\|3239760_3239901_-	YlcG family protein	K7PHH3	Enterobacteria_phage	5.5e-08	67.4
AVN02088.1\|3239897_3240260_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	1.5e-60	97.4
AVN02089.1\|3240256_3240547_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	4.8e-46	91.7
AVN02090.1\|3240539_3240710_-	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
AVN02091.1\|3240709_3241165_-	hypothetical protein	I6PD71	Cronobacter_phage	5.9e-59	66.2
AVN02092.1\|3241161_3241263_-	hypothetical protein	NA	NA	NA	NA
AVN02093.1\|3241355_3241808_-	hypothetical protein	NA	NA	NA	NA
AVN02094.1\|3241804_3242365_-	UDP-N-acetylglucosamine acyltransferase	NA	NA	NA	NA
AVN02095.1\|3242621_3242813_+	hypothetical protein	NA	NA	NA	NA
AVN02096.1\|3242849_3243143_-	protein ren	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
AVN02097.1\|3243139_3243841_-	Replication protein P	K7P6G2	Enterobacteria_phage	3.8e-129	99.6
AVN02098.1\|3243837_3244857_-	Replication protein O	A0A0M5M7Y1	Salmonella_phage	1.7e-109	63.4
AVN02099.1\|3244853_3245393_-	regulator	M9NZI6	Enterobacteria_phage	2.0e-61	66.1
AVN02100.1\|3245462_3245693_-	transcriptional regulator	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
AVN02101.1\|3245731_3246487_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.4e-92	75.0
AVN02102.1\|3246609_3247359_+	hypothetical protein	NA	NA	NA	NA
AVN02103.1\|3247355_3248183_+	DUF3037 domain-containing protein	NA	NA	NA	NA
AVN02104.1\|3248691_3248898_+	cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
AVN02105.1\|3248973_3249270_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
AVN02106.1\|3249275_3250061_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
AVN02107.1\|3250057_3250738_+	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	3.0e-131	98.7
AVN03652.1\|3250734_3250917_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	2.2e-28	98.3
AVN02108.1\|3250889_3251081_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.8e-26	98.4
AVN02109.1\|3251091_3251373_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	2.5e-47	100.0
AVN02110.1\|3251471_3251693_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	1.4e-34	97.3
AVN02111.1\|3251903_3252434_-	hypothetical protein	NA	NA	NA	NA
AVN02112.1\|3252324_3252576_-	hypothetical protein	NA	NA	NA	NA
AVN02113.1\|3252630_3252816_-	hypothetical protein	NA	NA	NA	NA
AVN02114.1\|3252748_3252916_+	hypothetical protein	A5VWB7	Enterobacteria_phage	2.9e-27	98.2
AVN02115.1\|3252955_3253174_+	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
AVN02116.1\|3253151_3254222_+\|integrase	integrase	Q9MCR4	Enterobacteria_phage	1.9e-201	99.7
3254296:3254310	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3741713 : 3757401

Shigella_phage(35.29%)

integrase,tail

attL 3738817:3738876|attR 3753486:3753545

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3738817:3738876	attL	NA	NA	NA	NA
AVN02563.1\|3741713_3742487_+	hypothetical protein	G9IA57	Pseudomonas_phage	4.1e-36	37.7
AVN03666.1\|3742556_3742685_-\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	1.7e-11	84.6
AVN02564.1\|3742739_3745883_-	GntR family transcriptional regulator	K7PGT9	Enterobacteria_phage	9.3e-260	57.4
AVN02565.1\|3745872_3746052_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
AVN03667.1\|3746227_3746785_-	protein YmfL	S5FXP0	Shigella_phage	1.5e-96	96.2
AVN02566.1\|3746822_3747023_-	cell division protein	NA	NA	NA	NA
AVN02567.1\|3747120_3747747_+	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	2.5e-47	48.8
AVN03668.1\|3747977_3748475_-	hypothetical protein	NA	NA	NA	NA
AVN02569.1\|3748671_3748896_-	hypothetical protein	A0A291AWX8	Escherichia_phage	1.2e-15	66.2
AVN02570.1\|3748968_3749331_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
AVN02571.1\|3749396_3750221_+	DUF2303 family protein	U5P439	Shigella_phage	6.0e-150	99.6
AVN02572.1\|3750348_3750885_+	HD family hydrolase	S5MW55	Escherichia_phage	2.0e-98	98.3
AVN02573.1\|3750875_3751754_+	hypothetical protein	A0A2R2Z314	Escherichia_phage	5.3e-165	92.4
AVN02574.1\|3751750_3752095_+	DNA-binding protein	U5P0J0	Shigella_phage	2.0e-30	80.7
AVN02575.1\|3752094_3752445_+	DNA-binding protein	U5P4J3	Shigella_phage	4.9e-61	100.0
AVN03669.1\|3752546_3753485_+\|integrase	site-specific integrase	U5P434	Shigella_phage	4.7e-183	99.7
AVN02576.1\|3753689_3754943_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.7e-95	47.0
3753486:3753545	attR	NA	NA	NA	NA
AVN02577.1\|3754954_3756058_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
AVN02578.1\|3756345_3757401_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	7.7e-118	60.9

DBSCAN-SWA_10

4143280 : 4149839

uncultured_Caudovirales_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVN02922.1\|4143280_4144237_+	iron-dicitrate ABC transporter permease FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
AVN02923.1\|4144237_4145005_+	Fe(3+) dicitrate transport ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
AVN02924.1\|4145562_4145976_-	hypothetical protein	NA	NA	NA	NA
AVN02925.1\|4146871_4148023_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.6e-42	36.0
AVN02926.1\|4147942_4148293_-\|transposase	transposase	Q716C1	Shigella_phage	8.9e-39	97.7
AVN02927.1\|4148393_4148966_+	hypothetical protein	Q858R9	Enterobacteria_phage	2.2e-71	69.0
AVN02928.1\|4149014_4149839_-	hypothetical protein	L7TR00	Rhizobium_phage	3.0e-16	35.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage