CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP031118	Providencia sp. WCHPr000369 plasmid p1_000369, complete sequence	0 crisprs	NA	0	0
CP031123	Providencia sp. WCHPr000369 chromosome, complete genome	5 crisprs	DEDDh,cas3,RT,PD-DExK,DinG,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,csa3,WYL,TnsE_C	14	10
CP031121	Providencia sp. WCHPr000369 plasmid pIMP4_000369, complete sequence	0 crisprs	RT	0	0
CP031120	Providencia sp. WCHPr000369 plasmid p3_000369, complete sequence	0 crisprs	NA	0	0
CP031119	Providencia sp. WCHPr000369 plasmid p2_000369, complete sequence	0 crisprs	NA	0	0
CP031122	Providencia sp. WCHPr000369 plasmid pIMP69_000369, complete sequence	0 crisprs	DEDDh	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP031123_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031123_1

1475252-1475938

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCCGCCTGTATGGCGGTGAAC	PILER-CR
TTTCTAAGCCGCCTGTATGGCGGTGAAC	CRISPRCasFinder
TTTCTAAGCCGCCTGTNTGGCGGTGAAC	CRT

11 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of CP031123_1

>merge|CP031123|1|1475252-1475938|PILER-CR,CRISPRCasFinder,CRT
TTTCTAAGCCGCCTGTGTGGCGGTGAACAACCACGGCTACGCAAACCGATTATGAGTGATTTTCTAAGCCGCCTGTATGGCGGTGAACCTACCGCATGGCAGATGCAATGTTAAAGGCTATTTCTAAGCCGCCTGTGTGGCGGTGAATTAACAACGTGAAAGTCGCCAGTGAATGCTTCTTTTTCTAAGCCGCCTGTGTGGCGGTGAACCAACCAATTTATGCAATGCAACCATCTTACATTTTCTAAGCCGCCTGTATGGCGGTGAACGCCTGCGCCTGTTCAAGCGCTGTAACCGCTTGTTTCTAAGCCGCCTGTATGGCGGTGAACAACTGCCCCGAGACGTATAAACCTCAATTAGATTTCTAAGCCGCCTGTATGGCGGTGAACTTGCAAACTGGAATTTTCTGTCTTGATATATATCTAAGCCGCCTGTATGGCGGTGAACTTTTGAAGATGACCAGTGTGATATTTCAGGGTTTTCTAAGCCGCCTGTATGGCGGTGAACTTGGTTTGCGCTGCTGCGGTATTATCAGTAATTTTCTAAGCCGCCTGTATGGCGGTGAACATTGATACGAATTTGTGGTTGCCACGCCGAAATTTCTAAGCCGCCTGTATGGCGGTGAACATACAGATTTTAAAATGAAACCAGATTAGCAATTTCTAAGCCGCCTGTGTGGCGGTGAAC

>CP031123|1|1|1475252-1475938|PILER-CR
TTTCTAAGCCGCCTGTGTGGCGGTGAAC	AACCACGGCTACGCAAACCGATTATGAGTGAT
TTTCTAAGCCGCCTGTATGGCGGTGAAC	CTACCGCATGGCAGATGCAATGTTAAAGGCTA
TTTCTAAGCCGCCTGTGTGGCGGTGAAT	TAACAACGTGAAAGTCGCCAGTGAATGCTTCTT
TTTCTAAGCCGCCTGTGTGGCGGTGAAC	CAACCAATTTATGCAATGCAACCATCTTACAT
TTTCTAAGCCGCCTGTATGGCGGTGAAC	GCCTGCGCCTGTTCAAGCGCTGTAACCGCTTG
TTTCTAAGCCGCCTGTATGGCGGTGAAC	AACTGCCCCGAGACGTATAAACCTCAATTAGA
TTTCTAAGCCGCCTGTATGGCGGTGAAC	TTGCAAACTGGAATTTTCTGTCTTGATATA
TATCTAAGCCGCCTGTATGGCGGTGAAC	TTTTGAAGATGACCAGTGTGATATTTCAGGGT
TTTCTAAGCCGCCTGTATGGCGGTGAAC	TTGGTTTGCGCTGCTGCGGTATTATCAGTAAT
TTTCTAAGCCGCCTGTATGGCGGTGAAC	ATTGATACGAATTTGTGGTTGCCACGCCGAAA
TTTCTAAGCCGCCTGTATGGCGGTGAAC	ATACAGATTTTAAAATGAAACCAGATTAGCAA
TTTCTAAGCCGCCTGTGTGGCGGTGAAC

>CP031123|1|1|1475252-1475938|CRISPRCasFinder
TTTCTAAGCCGCCTGTGTGGCGGTGAAC	AACCACGGCTACGCAAACCGATTATGAGTGAT
TTTCTAAGCCGCCTGTATGGCGGTGAAC	CTACCGCATGGCAGATGCAATGTTAAAGGCTA
TTTCTAAGCCGCCTGTGTGGCGGTGAAT	TAACAACGTGAAAGTCGCCAGTGAATGCTTCTT
TTTCTAAGCCGCCTGTGTGGCGGTGAAC	CAACCAATTTATGCAATGCAACCATCTTACAT
TTTCTAAGCCGCCTGTATGGCGGTGAAC	GCCTGCGCCTGTTCAAGCGCTGTAACCGCTTG
TTTCTAAGCCGCCTGTATGGCGGTGAAC	AACTGCCCCGAGACGTATAAACCTCAATTAGA
TTTCTAAGCCGCCTGTATGGCGGTGAAC	TTGCAAACTGGAATTTTCTGTCTTGATATA
TATCTAAGCCGCCTGTATGGCGGTGAAC	TTTTGAAGATGACCAGTGTGATATTTCAGGGT
TTTCTAAGCCGCCTGTATGGCGGTGAAC	TTGGTTTGCGCTGCTGCGGTATTATCAGTAAT
TTTCTAAGCCGCCTGTATGGCGGTGAAC	ATTGATACGAATTTGTGGTTGCCACGCCGAAA
TTTCTAAGCCGCCTGTATGGCGGTGAAC	ATACAGATTTTAAAATGAAACCAGATTAGCAA
TTTCTAAGCCGCCTGTGTGGCGGTGAAC

>CP031123|1|1|1475252-1475938|CRT
TTTCTAAGCCGCCTGTGTGGCGGTGAAC	AACCACGGCTACGCAAACCGATTATGAGTGAT
TTTCTAAGCCGCCTGTATGGCGGTGAAC	CTACCGCATGGCAGATGCAATGTTAAAGGCTA
TTTCTAAGCCGCCTGTGTGGCGGTGAAT	TAACAACGTGAAAGTCGCCAGTGAATGCTTCTT
TTTCTAAGCCGCCTGTGTGGCGGTGAAC	CAACCAATTTATGCAATGCAACCATCTTACAT
TTTCTAAGCCGCCTGTATGGCGGTGAAC	GCCTGCGCCTGTTCAAGCGCTGTAACCGCTTG
TTTCTAAGCCGCCTGTATGGCGGTGAAC	AACTGCCCCGAGACGTATAAACCTCAATTAGA
TTTCTAAGCCGCCTGTATGGCGGTGAAC	TTGCAAACTGGAATTTTCTGTCTTGATATA
TATCTAAGCCGCCTGTATGGCGGTGAAC	TTTTGAAGATGACCAGTGTGATATTTCAGGGT
TTTCTAAGCCGCCTGTATGGCGGTGAAC	TTGGTTTGCGCTGCTGCGGTATTATCAGTAAT
TTTCTAAGCCGCCTGTATGGCGGTGAAC	ATTGATACGAATTTGTGGTTGCCACGCCGAAA
TTTCTAAGCCGCCTGTATGGCGGTGAAC	ATACAGATTTTAAAATGAAACCAGATTAGCAA
TTTCTAAGCCGCCTGTGTGGCGGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP031123.1\|AXH62073.1\|1473819_1474599_+\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
CP031123.1\|AXH62066.1\|1468856_1470224_+\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|236652
CP031123.1\|AXH62075.1\|1476068_1476704_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
CP031123.1\|AXH62081.1\|1484526_1484808_+\|hypothetical-protein	unknown	unknown	unknown
CP031123.1\|AXH62068.1\|1470871_1471879_+\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
CP031123.1\|AXH62070.1\|1472310_1472769_+\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|183160
CP031123.1\|AXH62072.1\|1473547_1473817_+\|flagellar-biosynthetic-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
CP031123.1\|AXH62074.1\|1474933_1475206_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
CP031123.1\|AXH62082.1\|1484861_1485944_+\|lipopolysaccharide-heptosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223928
CP031123.1\|AXH62069.1\|1471871_1472288_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|181183
CP031123.1\|AXH62077.1\|1477737_1478682_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
CP031123.1\|AXH62078.1\|1478678_1479947_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
CP031123.1\|AXH62076.1\|1476712_1477735_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
CP031123.1\|AXH62065.1\|1468412_1468856_+\|flagella-biosynthesis-chaperone-FliJ	unknown	unknown	gnl\|CDD\|235563
CP031123.1\|AXH62083.1\|1486164_1486908_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133474
CP031123.1\|AXH62084.1\|1487223_1487508_+\|hypothetical-protein	unknown	unknown	unknown
CP031123.1\|AXH62079.1\|1479974_1483430_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
CP031123.1\|AXH62080.1\|1483426_1484401_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
CP031123.1\|AXH62067.1\|1470386_1470866_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|235909
CP031123.1\|AXH62071.1\|1472781_1473525_+\|flagellar-biosynthetic-protein-FliP	unknown	unknown	gnl\|CDD\|235566

Protein	Function_ID	Function_description	E-value
CP031123.1\|AXH62073.1\|1473819_1474599_+\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	5.19405e-69
CP031123.1\|AXH62066.1\|1468856_1470224_+\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|236652	PRK10118, PRK10118, flagellar hook length control protein FliK.	6.27218e-29
CP031123.1\|AXH62075.1\|1476068_1476704_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	3.56892e-51
CP031123.1\|AXH62068.1\|1470871_1471879_+\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	1.62299e-161
CP031123.1\|AXH62070.1\|1472310_1472769_+\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|183160	PRK11486, PRK11486, flagellar type III secretion system protein FliO.	4.62282e-30
CP031123.1\|AXH62072.1\|1473547_1473817_+\|flagellar-biosynthetic-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	5.07576e-31
CP031123.1\|AXH62074.1\|1474933_1475206_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	4.6391e-11
CP031123.1\|AXH62082.1\|1484861_1485944_+\|lipopolysaccharide-heptosyltransferase-family-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	1.49103e-17
CP031123.1\|AXH62069.1\|1471871_1472288_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|181183	PRK07963, fliN, flagellar motor switch protein FliN; Validated.	1.12852e-75
CP031123.1\|AXH62077.1\|1477737_1478682_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	4.02198e-129
CP031123.1\|AXH62078.1\|1478678_1479947_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	1.69619e-122
CP031123.1\|AXH62076.1\|1476712_1477735_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
CP031123.1\|AXH62065.1\|1468412_1468856_+\|flagella-biosynthesis-chaperone-FliJ	gnl\|CDD\|235563	PRK05689, fliJ, flagella biosynthesis chaperone FliJ.	7.61685e-37
CP031123.1\|AXH62083.1\|1486164_1486908_-\|hypothetical-protein	gnl\|CDD\|133474	cd06532, Glyco_transf_25, Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.	2.17653e-34
CP031123.1\|AXH62079.1\|1479974_1483430_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
CP031123.1\|AXH62080.1\|1483426_1484401_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	1.00081e-175
CP031123.1\|AXH62067.1\|1470386_1470866_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|235909	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed.	2.66678e-61
CP031123.1\|AXH62071.1\|1472781_1473525_+\|flagellar-biosynthetic-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	2.80312e-125

>CP031123.1|AXH62074.1|1474933_1475206_-|XRE-family-transcriptional-regulator
MKTHKELHDEWMKDPEYQVAYEEEIRTEKLQAMLKAWRESAGLTKVQIAEIIGVNPSTITRLESNENNASIKSIVKYAAACGIKNPVIAL
>CP031123.1|AXH62073.1|1473819_1474599_+|flagellar-type-III-secretion-system-protein-FliR
MLTITSETLTLWLSQGFYPFIRLLALLGTAPFFNEKQAITKVRVALAFFVVLIVSPQLPVVNIPLFSAMGLWVIVQQMVIGVAMGLTMQMAFAAVRHAGEVIGLQMGLSFATFFDPTGGPNMPILGRIFNVITLLLFLAFDGHLWLIYIVVNSFELLPIQTAPLNRDGFWVFAQFANTIFINGLMLALPFITLFLILNLALGILNRMTPQLSVFVVGFPLTLTIGISMLGVIISILPRYTERLIHQAFEQLSLMFNLFV
>CP031123.1|AXH62072.1|1473547_1473817_+|flagellar-biosynthetic-protein-FliQ
MTPESVMAMGTEAMKIALMLAAPLLLAALAAGLIISLLQAATQVNEMTLSFIPKILSVISVIIIAGPWMLNLLIDYMRSLLSSLPFIIG
>CP031123.1|AXH62071.1|1472781_1473525_+|flagellar-biosynthetic-protein-FliP
MLSFKSLFTITALLFLLPNSASAALPAIISHSMADGGQTWSLPVQTLLFLTLLGFIPALLLMMTSFTRIIIVLGLLRNALGTPSAPPNQVLLGLALFLTFFVMSPVADQVYREAYQPFSEDKISLETALEKGTAPLRTFMLGQTRESDLALFARIAKVGEIQEAKDVPLRILVPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPATVSLPFKLMLFVLVDGWQLLLGSLSQSFFN
>CP031123.1|AXH62070.1|1472310_1472769_+|flagellar-biosynthetic-protein-FliO
MAISNQAEQAPTSVPFLSTTVSSSEPNAPAIDHNDSLTQISGALGGIILLILAGAWLVKKLGFAPKKMGKEQIVKVKSRCSLGNKERVVVVEVNNECLVLGVTSQNISLLHQYPSEPENTTALPVEPLTFQSLLKKKQEAAKFAASVTSIHK
>CP031123.1|AXH62069.1|1471871_1472288_+|flagellar-motor-switch-protein-FliN
MSEAKNSPDASTNHDSEDLWAEALEQQKKAESASAGAQAFDNFDGQNPLNQLSDIDMIMDIPVRLSVELGRTKMTIKKLLSLSQGSVVSLDGLAGEPLDILINGYLIAQGEVVVVSDNYGIRITDIITPSERMRRLSR
>CP031123.1|AXH62068.1|1470871_1471879_+|flagellar-motor-switch-protein-FliM
MSDNILSQAEIDALLNDDAPSSSTPVPEMQGKDNVRPYDPNTQRRVIRERMQSLEIINERFARQFRMGLFNMLRRSPDITVGGIKIEPYHEFARNLPVPTNLNLIHMPPLRGTALFTFEPALVYIAVDNLFGGDGRFPVRQEGKEFTNTEQRIINRMLKLALGAYRDAWKPIADIEVEYVRSEIQVKFTNITTSPNDIVVTTPFLVEIGNTVGEFSICIPIAMIEPLRERLINPPMEQGHQENETWVTNLVTQVKRSELELVANFVDIPMRISRLLQLQKGDVLPIEKPDRLIVNVDGVPVLTSQYGTQNGQYALRVEHLINPVLNTLDEESTNE
>CP031123.1|AXH62067.1|1470386_1470866_+|flagellar-basal-body-associated-protein-FliL
MSSSKKSNSSNKGLIILFALLALAGAGFGGYTWWTTQQGAQTDSEEEKRPNMPQPIFMELEPFTVNLTGAADTPDRVLYIHVTLRLANEKSRKQLHEYLPEVRSRLLLLLSEQKAKNIETHEGKLQLMKDIKQTLTPTLIPGDTDQDISDVLFTTFILR
>CP031123.1|AXH62066.1|1468856_1470224_+|flagellar-hook-length-control-protein-FliK
MDINALNVPAASSTKNGNIQQNESRTDENQAPALPFQAMLDNQQPIEKQNAANQPVNEEALNKDIVDNKLAIASKETVEQTQVGQKNAENTIEQLNFSRNLRADSVQTALNTELLTGKDTNKQAWLNNLKQSLTGQVQTVASTAIKTESHPVLGAFTQKMQHLTDNTNGIINEDDGKHLESSQQQIAGEEDSPELGVFIKNEKEERRDQSLFPLDNQRDIRGKNLTADFMPLNKKVSDKDPVLNLQNVSSEALNQTTKSAFTLQTETGAFTTTSSQHTTTMPVSMMPTATTAQAAAMNAPTATPTMHLASQLGSEAWQQQLSQHMLFFSRQGVSQAQIRLHPEELGSLNVHLRIEDNQAVIHFVSPHSHVRAAMESMMPVLRSALQESGIHLAQGSVGQDNLNHQSDNPQQSTHQHDGQIQATHPSMGAVGISEANTTVSPITTASRQGGINTFA
>CP031123.1|AXH62065.1|1468412_1468856_+|flagella-biosynthesis-chaperone-FliJ
MAKNNALTTLLTLAVEASEEAAKVLAQVRQTHTQMAQQLNMLENYQSEYRQKLNQTLHTGMESDKWQNYQQFLVTLELTIEQQQQQLNLWEQRVSEANRHWQEKQQRVNAFDTLIQRAEHTEYQRQNRLEQKQMDEFAQRATLRRPQ
>CP031123.1|AXH62075.1|1476068_1476704_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEVTLLPDSTVPLDFLWQKVYQQIHIALADNKTSQGHSTIAVAFPEYGSVGFRLGKKIRLHAKTPAELELLNVQKWLARLMDYVHIKSIQTVPEQHVQVSYIRKHVKGQSRIEADMQQKARLWSEKSGQPLEQCLKTLSASKPKAANRLPFIWVESLHARDKQAESRSFPLFIKRIDATQKQVGVFSCYGLSQTTNDTVCLATVPHF
>CP031123.1|AXH62076.1|1476712_1477735_-|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDVASVLAFEKKLVPSDGYFYGTCWDNKSQFSPLSLQEKSVRGTISNRLKGAVKSDPLKLNSEVEKANLQTVDACALGTEQDTLVHQFTLKVLGGVETPSACNNALFKQSYAQAAKDYIEKQGFQELGRRYAQNIANGRFLWRNRVGAEQIEVVVKVLNKGQSMEWVFDATQYSIHQFDAKDEKITQLAEKIAAALAHPQGALLLEITTYSQLGKAQEVYPSEELVMDKGKGDKSKILYHVNGHAAMHSQKIGNALRSIDTWYPAYGSESGAGAIAIEPYGAVTNLGTAYRTPKDKQDFYTHFDKWARGEKLPRIEDEHYVMAVLVRGGVFGESDK
>CP031123.1|AXH62077.1|1477737_1478682_-|type-I-F-CRISPR-associated-protein-Csy2
MSSTYILKLPHLKIHNANALSSPYTIGFPAMTAWLGFMHALERKLGDDGSLNIILDSIAIISHDCDLQTYRGANDYVSSIVGTGNPLNSDGSRSAFIEEARCHLDVSLLIKYGIKNNKVIEGLPEYSPLLDVIHDLVMTMKLAGGDILSLGKPSVHILPSEDANGKYRQKLLNSVMPGYALIERRDLMIGAMNNGQDAIDALLDHVVVENYCVDTGKENGNKTSFEWRTQRKTAGWIVPIATGYQGISPLGQAKNQRDSEVPHRFAESVVTLGEFVLANRVNNIHDILWGFKFVESQNLYLCQQVAANFISSGE
>CP031123.1|AXH62078.1|1478678_1479947_-|type-I-F-CRISPR-associated-protein-Csy1
MLDPAIEVFFAERKEGWLKKNVKASMSDNELLQLQQECDAAFSLSQWLPNAAKRAGQISLSTHPCTFSHPSSRKNKNGYVTAILASSAQANDGFLRTGNVVVETDALGNAAALDVYKFLTLELQDNKTLLAHIEDETSLAKDLLKQGDENYQVLRDGFLAMVVSDDTVATSSKIKQVYFPVWLEGSEYHLLSPLTPSGLVFELRKRIDAIRFSEQTKALRDLKRKGEFSDIGYQEIYGLTTIGYGGTKPQNISVLNNQNAGKAHLLPSLPPKIAQRKLRLPTHDFFSNTLSPWQVKESLEAFHGLISLPKELRGSRFIEYRDRRIQEYLDYVMLTMWEVRREFEQYGIQLPAELAKVQQTWLFPDQQRRNNSDEWLEGVILLIAQQFMRHYKKVLGKKAISLGDDELAAIADVIAINKELLR
>CP031123.1|AXH62079.1|1479974_1483430_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKHALKRTRRVLDAFANRIGDNTWQTLITQEGLQMVQKLLRRSASRNTAVSCHWIRSRSRSQLLWVVGNKNKFNSQGYVPVNRTEKSLLASERENNWKYLSLINALTRLAALLHDWGKASQLFQDKLNPHSKNHFKGDPLRHEWVSSLLFSALVKSQGDPQQDESWLDALVNSSWHELQLQTWVKENNHCETPFSQLPDAASLLVWLIVSHHRLPFLGNDKERLSYADKSSDSLAKLLETLDKHWGYQNYYDEAEYSQRIHQCFEFPYGLLSESKVWQQALSQAAEHLKHQLPLLNEALENGCWRLVAEQVRLCLMLGDHNYSSKEADSAWQSDIPLYANTQRLHGHTEYKQRLDEHLVNVANIAANVTEYLPFFATEPPVASDINELKHDKHATGKFSWQEDAVNAIDQYREEQQDKTQGYFVINMASTGCGKTIANAKIMQALAEDKQSLRFILALGLRTLTLQTGDEYRDRLGVEDDNLAVLIGSKAVLELHQEQQNNIEEQPLSVESGSESQESLFDDERLELNWQGSLPEEELSTVLTRSKDRALLYAPILACTIDHIMGATETTRGGRYILPYLRLMSSDLVIDEIDDFTGDDSKAIGRLVYLAGALGRKVMISSATIPPTLALFYFKAYQLGWRIHALSQRKSLQVGCVWVDEGQYDGKKDKCLRSCQIATITAVDDDVTLNHYRQYHHTFIEKRIKVLQSQAARRKAFIVPMQKEQGPDRQTQYFSHIQQGILGLHQMHFCTEKQTQLQVSFGVVRVANIPVCVVLTHYLLASEWPEGVEIRTMAYHSQQVLLLRHEQEKHLDAVLKRKEKIGEPPEAFQNPVIRQHIDHVHQQGNAKQLIFILVATPVEEVGRDHDFDWAVIEPSSYRSIIQMAGRVRRHREGEISSPNIALLQYNWKGFIEEKPQDVFYKPGYENGNLNLRLSTHDLCELVDELQLQNSVDAIPRIQQIPNWKSQQKNSLACLEHASIERLMGDITDLKPKTTTHSRLLFQAIETPLNTPNTLWGYTCGVWGLTALSQQFFSYRKSEPTMCLSLILSAKNNPYFCEYDKDSGWVKVDGKYGIGFQPLAESLKQRLWLVRDYQQSLESRENEYQSAEQLSRRYGEISFSPREKSGVHFYYNDQMGLSTLNVSE
>CP031123.1|AXH62080.1|1483426_1484401_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPSDLKTILHSKRANMYYLEHCRVMQKDGRVLYFTEAKNENLYFNIPIANTTVLLLGTGTSVTQAAMRMLSQAGVLVGFCGGGGTPLYMSTEVEWLTPQGEYRPTEYLQGWLFFWFDDEKRLAVAKKLQQSRIKYLQQVWQSSRELQNEGFTYNDSTIQSALNTFHQRTDAAQDTQELLLTEAQLTKTLYKYAANNTGQKNFTRQHQATDKANDFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDIADLIKDAIVLPWAFICGKEGASEQEFRQQVLQSFVDHQSLDFMFDTVKSLALPPTKNPQQVTSL
>CP031123.1|AXH62081.1|1484526_1484808_+|hypothetical-protein
MVSKKYLFDNFFMRFMAVTSTTTHIYSGKTENSGSRAAFAVTNAYIILMLWYRVSQCRVRIIDIYFDADVLRQYGNVVLNHLSVIFKLNNLQS
>CP031123.1|AXH62082.1|1484861_1485944_+|lipopolysaccharide-heptosyltransferase-family-protein
MNILRKINRYRNEKTKKIKFKLNLWFMKLFYKKQNIDVNDCNNVCIFMHAKAIGDAIITSGLIEKIRSSGKKVYVIAPEGLSFLFSDIIGNDGFYSFDKKKIPELVSELKKVNIDLVIDIFDFDHSIRHRLKTLFLLKPAKSIGFDQPKASIYDINLHSDGGSHLTDRMRKVLDYLKLDTKNYQYKLSFDSVKFSSAHDYANSIKENKKLIILNPYASQSERSFSMQQINEIIEYLNSLNNYKTVVFNLGHNINCESLENVVLNPYSDAGNSFALVENADVVVSVDTAIVHLASAFNIKQYCVYNNKRNVLNQNCNIIFGANSPNAIQLTTSDNLGLAIGDPMSKFDVNRLINAMRKDLN
>CP031123.1|AXH62083.1|1486164_1486908_-|hypothetical-protein
MIVFIINLKESSERRMKIQIQLDKTKLKYEFINAINGKDLSDTELKEITYDYPNCMLSKGEIGCVLSHLSIYKKMADENIEQALVLEDDATLPHNIEYVVSKIKKIDKLTKPNIYLLSCVDSYIKNQKLDNNIFKVYQAIRSHAYIINKKAAKRLISFQTPIKYEADMWWYFRYFNCANIYCFIPSVIPYDDETKSISLIEQERLPLIESREKYRSRLRKKIRNYQYYRLKDLFLKKVLLKIEYCKK
>CP031123.1|AXH62084.1|1487223_1487508_+|hypothetical-protein
MLQKENPKENLKAKCPPIVGQPITTALFMPKYSQYNEQLAIPIEFFKSETRAALWTTTQKLIQICLGGIKNQIRYQPKLTFINFEFASRDGIYI

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Crispr_ID: CP031123_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031123_2

1487505-1487658

TypeI-F

I-F

Consensus_repeat	Method
GCTGATTTCTAAGCTGCCTGTGTGGCAGTGAACT	CRISPRCasFinder
CAGCTGATTTCTAAGCTGCCTGTGTGGCAGTGAAC	PILER-CR

2 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of CP031123_2

>merge|CP031123|2|1487505-1487658|CRISPRCasFinder,PILER-CR
CTGACTTTCTAAGCTGCCTGTGTGGCAGTGAACAAAGCATCCAAAGGCATTGTCTTTACTGCTGATTTCTAAGCTGCCTGTGTGGCAGTGAACTTGCTCTGGTAGTTGCCCGACTCGTCAGCTGATTTCTAAGCTGCCTGTGTGGCAGTGAACT

>CP031123|2|2|1487505-1487658|CRISPRCasFinder
CTGACTTTCTAAGCTGCCTGTGTGGCAGTGAACA	AAGCATCCAAAGGCATTGTCTTTACT
GCTGATTTCTAAGCTGCCTGTGTGGCAGTGAACT	TGCTCTGGTAGTTGCCCGACTCGTCA
GCTGATTTCTAAGCTGCCTGTGTGGCAGTGAACT

>CP031123|2|2|1487510-1487657|PILER-CR
TTTCTAAGCTGCCTGTGTGGCAGTGAACAAAGCAT	CCAAAGGCATTGTCTTTACTGCTGA
TTTCTAAGCTGCCTGTGTGGCAGTGAACTTGCTCT	GGTAGTTGCCCGACTCGTCAGCTGA
TTTCTAAGCTGCCTGTGTGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP031123.1\|AXH62081.1\|1484526_1484808_+\|hypothetical-protein	unknown	unknown	unknown
CP031123.1\|AXH62085.1\|1487936_1488872_-\|flagellar-hook-filament-junction-protein-FlgL	unknown	unknown	gnl\|CDD\|181202
CP031123.1\|AXH62088.1\|1491665_1492769_-\|flagellar-basal-body-P-ring-protein-FlgI	unknown	unknown	gnl\|CDD\|235399
CP031123.1\|AXH62075.1\|1476068_1476704_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
CP031123.1\|AXH62086.1\|1488900_1490544_-\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236165
CP031123.1\|AXH64736.1\|1492804_1493551_-\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
CP031123.1\|AXH62091.1\|1495228_1496488_-\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235557
CP031123.1\|AXH62074.1\|1474933_1475206_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
CP031123.1\|AXH62082.1\|1484861_1485944_+\|lipopolysaccharide-heptosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223928
CP031123.1\|AXH62083.1\|1486164_1486908_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133474
CP031123.1\|AXH62087.1\|1490685_1491666_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	unknown	unknown	gnl\|CDD\|235559
CP031123.1\|AXH62077.1\|1477737_1478682_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
CP031123.1\|AXH62078.1\|1478678_1479947_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
CP031123.1\|AXH62076.1\|1476712_1477735_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
CP031123.1\|AXH62093.1\|1497385_1497790_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
CP031123.1\|AXH62092.1\|1496515_1497373_-\|flagellar-basal-body-rod-modification-protein	unknown	unknown	gnl\|CDD\|235847
CP031123.1\|AXH62090.1\|1494457_1495213_-\|flagellar-hook-basal-body-complex-protein	unknown	unknown	gnl\|CDD\|183642
CP031123.1\|AXH62079.1\|1479974_1483430_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
CP031123.1\|AXH62080.1\|1483426_1484401_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
CP031123.1\|AXH62089.1\|1493656_1494439_-\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687

Protein	Function_ID	Function_description	E-value
CP031123.1\|AXH62085.1\|1487936_1488872_-\|flagellar-hook-filament-junction-protein-FlgL	gnl\|CDD\|181202	PRK08027, flgL, flagellar hook-filament junction protein FlgL.	4.41224e-97
CP031123.1\|AXH62088.1\|1491665_1492769_-\|flagellar-basal-body-P-ring-protein-FlgI	gnl\|CDD\|235399	PRK05303, flgI, flagellar basal body P-ring protein FlgI.	0
CP031123.1\|AXH62075.1\|1476068_1476704_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	3.56892e-51
CP031123.1\|AXH62086.1\|1488900_1490544_-\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236165	PRK08147, flgK, flagellar hook-associated protein FlgK; Validated.	0
CP031123.1\|AXH64736.1\|1492804_1493551_-\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	2.0398e-96
CP031123.1\|AXH62091.1\|1495228_1496488_-\|flagellar-hook-protein-FlgE	gnl\|CDD\|235557	PRK05682, flgE, flagellar hook protein FlgE; Validated.	8.46989e-151
CP031123.1\|AXH62074.1\|1474933_1475206_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	4.6391e-11
CP031123.1\|AXH62082.1\|1484861_1485944_+\|lipopolysaccharide-heptosyltransferase-family-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	1.49103e-17
CP031123.1\|AXH62083.1\|1486164_1486908_-\|hypothetical-protein	gnl\|CDD\|133474	cd06532, Glyco_transf_25, Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.	2.17653e-34
CP031123.1\|AXH62087.1\|1490685_1491666_-\|flagellar-assembly-peptidoglycan-hydrolase-FlgJ	gnl\|CDD\|235559	PRK05684, flgJ, flagellar assembly peptidoglycan hydrolase FlgJ.	1.47195e-137
CP031123.1\|AXH62077.1\|1477737_1478682_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	4.02198e-129
CP031123.1\|AXH62078.1\|1478678_1479947_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	1.69619e-122
CP031123.1\|AXH62076.1\|1476712_1477735_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
CP031123.1\|AXH62093.1\|1497385_1497790_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	4.2813e-72
CP031123.1\|AXH62092.1\|1496515_1497373_-\|flagellar-basal-body-rod-modification-protein	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	2.32681e-46
CP031123.1\|AXH62090.1\|1494457_1495213_-\|flagellar-hook-basal-body-complex-protein	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	1.79293e-108
CP031123.1\|AXH62079.1\|1479974_1483430_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
CP031123.1\|AXH62080.1\|1483426_1484401_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	1.00081e-175
CP031123.1\|AXH62089.1\|1493656_1494439_-\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	8.45266e-153

>CP031123.1|AXH62083.1|1486164_1486908_-|hypothetical-protein
MIVFIINLKESSERRMKIQIQLDKTKLKYEFINAINGKDLSDTELKEITYDYPNCMLSKGEIGCVLSHLSIYKKMADENIEQALVLEDDATLPHNIEYVVSKIKKIDKLTKPNIYLLSCVDSYIKNQKLDNNIFKVYQAIRSHAYIINKKAAKRLISFQTPIKYEADMWWYFRYFNCANIYCFIPSVIPYDDETKSISLIEQERLPLIESREKYRSRLRKKIRNYQYYRLKDLFLKKVLLKIEYCKK
>CP031123.1|AXH62082.1|1484861_1485944_+|lipopolysaccharide-heptosyltransferase-family-protein
MNILRKINRYRNEKTKKIKFKLNLWFMKLFYKKQNIDVNDCNNVCIFMHAKAIGDAIITSGLIEKIRSSGKKVYVIAPEGLSFLFSDIIGNDGFYSFDKKKIPELVSELKKVNIDLVIDIFDFDHSIRHRLKTLFLLKPAKSIGFDQPKASIYDINLHSDGGSHLTDRMRKVLDYLKLDTKNYQYKLSFDSVKFSSAHDYANSIKENKKLIILNPYASQSERSFSMQQINEIIEYLNSLNNYKTVVFNLGHNINCESLENVVLNPYSDAGNSFALVENADVVVSVDTAIVHLASAFNIKQYCVYNNKRNVLNQNCNIIFGANSPNAIQLTTSDNLGLAIGDPMSKFDVNRLINAMRKDLN
>CP031123.1|AXH62081.1|1484526_1484808_+|hypothetical-protein
MVSKKYLFDNFFMRFMAVTSTTTHIYSGKTENSGSRAAFAVTNAYIILMLWYRVSQCRVRIIDIYFDADVLRQYGNVVLNHLSVIFKLNNLQS
>CP031123.1|AXH62080.1|1483426_1484401_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPSDLKTILHSKRANMYYLEHCRVMQKDGRVLYFTEAKNENLYFNIPIANTTVLLLGTGTSVTQAAMRMLSQAGVLVGFCGGGGTPLYMSTEVEWLTPQGEYRPTEYLQGWLFFWFDDEKRLAVAKKLQQSRIKYLQQVWQSSRELQNEGFTYNDSTIQSALNTFHQRTDAAQDTQELLLTEAQLTKTLYKYAANNTGQKNFTRQHQATDKANDFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDIADLIKDAIVLPWAFICGKEGASEQEFRQQVLQSFVDHQSLDFMFDTVKSLALPPTKNPQQVTSL
>CP031123.1|AXH62079.1|1479974_1483430_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKHALKRTRRVLDAFANRIGDNTWQTLITQEGLQMVQKLLRRSASRNTAVSCHWIRSRSRSQLLWVVGNKNKFNSQGYVPVNRTEKSLLASERENNWKYLSLINALTRLAALLHDWGKASQLFQDKLNPHSKNHFKGDPLRHEWVSSLLFSALVKSQGDPQQDESWLDALVNSSWHELQLQTWVKENNHCETPFSQLPDAASLLVWLIVSHHRLPFLGNDKERLSYADKSSDSLAKLLETLDKHWGYQNYYDEAEYSQRIHQCFEFPYGLLSESKVWQQALSQAAEHLKHQLPLLNEALENGCWRLVAEQVRLCLMLGDHNYSSKEADSAWQSDIPLYANTQRLHGHTEYKQRLDEHLVNVANIAANVTEYLPFFATEPPVASDINELKHDKHATGKFSWQEDAVNAIDQYREEQQDKTQGYFVINMASTGCGKTIANAKIMQALAEDKQSLRFILALGLRTLTLQTGDEYRDRLGVEDDNLAVLIGSKAVLELHQEQQNNIEEQPLSVESGSESQESLFDDERLELNWQGSLPEEELSTVLTRSKDRALLYAPILACTIDHIMGATETTRGGRYILPYLRLMSSDLVIDEIDDFTGDDSKAIGRLVYLAGALGRKVMISSATIPPTLALFYFKAYQLGWRIHALSQRKSLQVGCVWVDEGQYDGKKDKCLRSCQIATITAVDDDVTLNHYRQYHHTFIEKRIKVLQSQAARRKAFIVPMQKEQGPDRQTQYFSHIQQGILGLHQMHFCTEKQTQLQVSFGVVRVANIPVCVVLTHYLLASEWPEGVEIRTMAYHSQQVLLLRHEQEKHLDAVLKRKEKIGEPPEAFQNPVIRQHIDHVHQQGNAKQLIFILVATPVEEVGRDHDFDWAVIEPSSYRSIIQMAGRVRRHREGEISSPNIALLQYNWKGFIEEKPQDVFYKPGYENGNLNLRLSTHDLCELVDELQLQNSVDAIPRIQQIPNWKSQQKNSLACLEHASIERLMGDITDLKPKTTTHSRLLFQAIETPLNTPNTLWGYTCGVWGLTALSQQFFSYRKSEPTMCLSLILSAKNNPYFCEYDKDSGWVKVDGKYGIGFQPLAESLKQRLWLVRDYQQSLESRENEYQSAEQLSRRYGEISFSPREKSGVHFYYNDQMGLSTLNVSE
>CP031123.1|AXH62078.1|1478678_1479947_-|type-I-F-CRISPR-associated-protein-Csy1
MLDPAIEVFFAERKEGWLKKNVKASMSDNELLQLQQECDAAFSLSQWLPNAAKRAGQISLSTHPCTFSHPSSRKNKNGYVTAILASSAQANDGFLRTGNVVVETDALGNAAALDVYKFLTLELQDNKTLLAHIEDETSLAKDLLKQGDENYQVLRDGFLAMVVSDDTVATSSKIKQVYFPVWLEGSEYHLLSPLTPSGLVFELRKRIDAIRFSEQTKALRDLKRKGEFSDIGYQEIYGLTTIGYGGTKPQNISVLNNQNAGKAHLLPSLPPKIAQRKLRLPTHDFFSNTLSPWQVKESLEAFHGLISLPKELRGSRFIEYRDRRIQEYLDYVMLTMWEVRREFEQYGIQLPAELAKVQQTWLFPDQQRRNNSDEWLEGVILLIAQQFMRHYKKVLGKKAISLGDDELAAIADVIAINKELLR
>CP031123.1|AXH62077.1|1477737_1478682_-|type-I-F-CRISPR-associated-protein-Csy2
MSSTYILKLPHLKIHNANALSSPYTIGFPAMTAWLGFMHALERKLGDDGSLNIILDSIAIISHDCDLQTYRGANDYVSSIVGTGNPLNSDGSRSAFIEEARCHLDVSLLIKYGIKNNKVIEGLPEYSPLLDVIHDLVMTMKLAGGDILSLGKPSVHILPSEDANGKYRQKLLNSVMPGYALIERRDLMIGAMNNGQDAIDALLDHVVVENYCVDTGKENGNKTSFEWRTQRKTAGWIVPIATGYQGISPLGQAKNQRDSEVPHRFAESVVTLGEFVLANRVNNIHDILWGFKFVESQNLYLCQQVAANFISSGE
>CP031123.1|AXH62076.1|1476712_1477735_-|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDVASVLAFEKKLVPSDGYFYGTCWDNKSQFSPLSLQEKSVRGTISNRLKGAVKSDPLKLNSEVEKANLQTVDACALGTEQDTLVHQFTLKVLGGVETPSACNNALFKQSYAQAAKDYIEKQGFQELGRRYAQNIANGRFLWRNRVGAEQIEVVVKVLNKGQSMEWVFDATQYSIHQFDAKDEKITQLAEKIAAALAHPQGALLLEITTYSQLGKAQEVYPSEELVMDKGKGDKSKILYHVNGHAAMHSQKIGNALRSIDTWYPAYGSESGAGAIAIEPYGAVTNLGTAYRTPKDKQDFYTHFDKWARGEKLPRIEDEHYVMAVLVRGGVFGESDK
>CP031123.1|AXH62075.1|1476068_1476704_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEVTLLPDSTVPLDFLWQKVYQQIHIALADNKTSQGHSTIAVAFPEYGSVGFRLGKKIRLHAKTPAELELLNVQKWLARLMDYVHIKSIQTVPEQHVQVSYIRKHVKGQSRIEADMQQKARLWSEKSGQPLEQCLKTLSASKPKAANRLPFIWVESLHARDKQAESRSFPLFIKRIDATQKQVGVFSCYGLSQTTNDTVCLATVPHF
>CP031123.1|AXH62074.1|1474933_1475206_-|XRE-family-transcriptional-regulator
MKTHKELHDEWMKDPEYQVAYEEEIRTEKLQAMLKAWRESAGLTKVQIAEIIGVNPSTITRLESNENNASIKSIVKYAAACGIKNPVIAL
>CP031123.1|AXH62085.1|1487936_1488872_-|flagellar-hook-filament-junction-protein-FlgL
MRLSTNMIYHQRLQDMNSAQARWMDAGSQLASGKRVSKPSDDPQASSQAVRINQSENRNQQYVASRGFAKTGMTLQMSILTQMTDVTTQIDTTIIQASNQGSLSDKDRNTLAEQLTGLKEQLVALGNSTDGNGRYIFAGFKSDKPPFEIDANGDVLYHGGDKAIMQNVASDREMTTYFTGAQVFDTDSNGVVNIFKALNTGIESLKKPLQGAPQADLDQAQSELGEANRAIKSALDQISNIEAKQGLQLQEIDKLNFLADTRSIQNAARKSELLETNWTGTTTDYYKEKAMFEASQSIFKDLNSMSLFGSR
>CP031123.1|AXH62086.1|1488900_1490544_-|flagellar-hook-associated-protein-FlgK
MLNNVMNNALSGVNAAQGGLSVISNNLANAGVGYYHRQSAVFGENPGTMTPNGYFGNGTYFSHVRREFDEFVNAQYSQSRARSGDYEAYVKNCNKVDDLLTNDIEDISSNIGSFFTALDAASSDASDKTLIDVFLGNSNALLSQFKEADRRLQEMERDTNHQIENKVKDINIYAEKIAGLNQQISRIRSVSGSEPNDLLDVRDRLVNEVNSLVGVKVIEQNGNYNVTFANGLPLVTGEKANRLEAVPSSKDDSRFSIGFVGANGQAREIPDESFRGGELSGILRSRQEVMDPAYQKLNKLALVFATKFNEVHSKGYDANGNTGKDFFEMGKGSVVSNTHNSGKADFDLSYSDVSKVTGNNYEMRFDGNEWNVTRLPEGIKVPVDSNTAGTLKFDGLEIKISNSTGMSKGDSFLVKPVSGVINGMQVLVSNASDFAAAGSKDSGPGDNENIKQLVKLQDEKLIDGSSTFSDFYATLVNDVGSKTKQAQIDSETQNKMTESFYEQEQAISGVNMNEESIQMQKIQQFFNANAQVLKTVDDLFNALMRAF
>CP031123.1|AXH62087.1|1490685_1491666_-|flagellar-assembly-peptidoglycan-hydrolase-FlgJ
MSDMQLLQGAAFDLQSLGQLKGELNKNSEQGLRHVTQQLEATFVQLMLKSMRDALPQDGLFSSDQTRMLTSMYDQQIAQDLSQKGLGFGEMMYQQLTRDQHSSSEPASSGLLPLDEKTAQSLPPFNMEQMMRHFAPMGDALSAPFQKIKALSLNSSNFISRLIEPAKAASQNSGISHFLVLAQAALESGWGQREILKSDGKTSHNLFGIKAGKNWEGLVTNIMTTEVINGKTIKMRDDFRVYGSYEEAIADYINLLTENPRYKDVKKAPTPEIAARRLHQAGYATDPGYSDKLITLINQIRGHQPTSSLSTSRAVQAYTIDLNDIF
>CP031123.1|AXH62088.1|1491665_1492769_-|flagellar-basal-body-P-ring-protein-FlgI
MKNNVLILLSLFFCFAFSAHSERIKDLTTVQGVRDNALIGYGLVVGLDGTGDQTMQTPFTTQSLNNMLSQMGITVPPGTNMQLKNVAAVMVTAKLPPFARTGQSVDIVVSSMGNAKSLRGGTLLMTPLKGVDGQIYAMAQGNILVGGAGASGGGSSIKVNQLNGGRITGGATIERELPSSFGQSGAINLQLNEDSFTLAQDIADAINRMGGMGTASALDSRTVQLLVPANNRDQVRFLARVQELNVRAPVAEAKVILNSRTGSVVINRSVTLDSCAVAHGSLAVTVERQTQVSQPDTPFAGGQTVVTRNTSVGVQDRGGALQKVNASVQLNQVIQALNTLGATPNDLMSILQAMESAGCLRAKLEII
>CP031123.1|AXH64736.1|1492804_1493551_-|flagellar-basal-body-L-ring-protein-FlgH
MIESGTISQQQKAALLTRFITPKQAGLLAILVLVTSGCAQIKSRPLVDTQTTAIPTAPTAPAPNGSIFQSAQPAYYGYQPLFEDRRPRNVGDILTINLQENVSASKNSSANANRSGKTGFLAAILPGFMQGWIGGKNTELDIKGNSDFSGKGGANANNTFKGTITVTVDQLLANGNLHVVGEKRIAINQGTESIRFSGVVNPRTIGSDNHVSSTQVADARIEYVGDGYINESQNMGWLQRFFLNVSPY
>CP031123.1|AXH62089.1|1493656_1494439_-|flagellar-basal-body-rod-protein-FlgG
MIRSLWIAKTGLDAQQTNLDVISNNLANVSTNGFKRQRAVFEDLMYQNIRQPGAMSSEQTSLPSGLQMGTGSRPVATMRIHAQGALNKTGNTNDIAIRGQGFLHVQMPDGTDAYTRDGALQPNQDGQLVTSSGYQIVPAIMIPDNANSLSIARDGTVTITVYGDNQPQQIGQITLTTFINDAGLESMGENLYMETASSGAPNESAPGTNGAGLLYQHMLETSNVNVAEELVNMIQTQRAYEINSKAVSASDQMLQRLTQL
>CP031123.1|AXH62090.1|1494457_1495213_-|flagellar-hook-basal-body-complex-protein
MDHVIYTAMGGARHALENQAIVSNNIANVSTAGFKAQLSAMRAVPINGDSEQTRTLVVASTPGADMSQGPLNYTGKQTDVALNDKHFLAVELADGTEAYTRNGNIQVSSEGELVIGERRLQGDGGPINVPPNAELTIGADGTVTALLATDPPTMLGQIGRLKVVEAQPQDLIRGEDGLFHLSPQGQAANGNVLPQSERGIVTAGVIEGSNVNAAEAMVSMIANARHFEMQMKVVRSADENAQRANQLLAVS
>CP031123.1|AXH62091.1|1495228_1496488_-|flagellar-hook-protein-FlgE
MSFSQAVSGLNAASAGLDSIGNNIANSATNGFKGATTSFADMFAGSGVGLGVNVAAVTQNFKDGPITRTDRATDVAISGNGFFRVQDQNGDTYYSRDGQFLRDKSGNLVNNQGMVVTGYPASVDEKGNVTIQSGGVPAGLNIPTDMMDAKASELAKLTINLNSEDKIKDKPFDVNNPDDSATYNFSTTMTAYDSQGNTHEISVYFVKSADNEWKVYAKDANDKVATQLINTEDVDDTVVVHNKLIFDGNGRLSAPTDATFDFNYKGLNGANDGVLRVDLNKTRQQKVSESSVSAIDVNGYPAGEYTTFKIEDNGLITANYSNQQKRVVGQVALSAFANPNGLVSQGGNVWASSNASGNPMDGVPGVGQFGKLTSGALESSNVDMSQELISMIVMQRNYQSNAQTIKTQDQMLQTLVNLR
>CP031123.1|AXH62092.1|1496515_1497373_-|flagellar-basal-body-rod-modification-protein
MGIAATMYDSLDNSIAGPEPAASNVPKKSQSDDMRDTFLKMIVTQMQNQDPTKPMENTDLTSQLAQIATLESMNKLSDSVSGISQQIGSGQSLQATQLVGKGVLIPRNEIILAPLKKENTGEDSNVTKPSNPLPDEGISPNSPSMFGLSNKGAIAGEEGGEEPQSEYISSPFGFFLPKLADNVEITIRDKNRMVVRTITYDTEVKPDIYDMAWDGRDNNGNLVTDTTGKYYFDVKAVSSGAEIEVTKLGYTRVNGVTPGSDAPLLDVGIGQSVPLSSIFKVYPSS
>CP031123.1|AXH62093.1|1497385_1497790_-|flagellar-basal-body-rod-protein-FlgC
MALLSIFDISASALTAQSQRLNVSASNMANAESIAGPDGQPYRAKQVVFQMAPQGRHEVGGVRVSELIEDPTPPRMEYKPGHPSANEKGYVQMPNVDMVGEMINTISASRSYQANLEVMNTAKTLLQKTLTIGQ

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Crispr_ID: CP031123_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031123_3

3131870-3132009

Orphan

Consensus_repeat	Method
CCCAGTTCCCAACTATTTTGTCA	PILER-CR

2 spacers

The CRISPR arrays of CP031123_3

>merge|CP031123|3|3131870-3132009|PILER-CR
AGTTCCAAACTATTTTGTCATTTTTAATTTTCGTATTAGCTTACGACGCTACACCCAGTTCCCATCTATTTTGTCACTCTTCCCTAAATAATCCTTAAAAACTCCATTTCCACCCCTCCCAGTTCCCAACTATTTTGTCC

>CP031123|3|3|3131870-3132009|PILER-CR
AGTTCCAAACTATTTTGTCATTT	TTAATTTTCGTATTAGCTTACGACGCTACACCC
AGTTCCCATCTATTTTGTCACTC	TTCCCTAAATAATCCTTAAAAACTCCATTTCCACCCCTCCC
AGTTCCCAACTATTTTGTCC

Protein	Signature genes	Signature genes Name	Protein_function
CP031123.1\|AXH63422.1\|3138064_3138727_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
CP031123.1\|AXH63411.1\|3127832_3128621_-\|ANT(3'')-Ia-family-aminoglycoside-nucleotidyltransferase-AadA1	unknown	unknown	gnl\|CDD\|184296
CP031123.1\|AXH63424.1\|3141443_3142019_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
CP031123.1\|AXH63408.1\|3126471_3126795_-\|hypothetical-protein	unknown	unknown	unknown
CP031123.1\|AXH63421.1\|3136580_3137990_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341045
CP031123.1\|AXH63410.1\|3127259_3127757_-\|hypothetical-protein	unknown	unknown	unknown
CP031123.1\|AXH63409.1\|3126827_3127199_-\|hypothetical-protein	unknown	unknown	unknown
CP031123.1\|AXH63417.1\|3132122_3133289_+\|hypothetical-protein	unknown	unknown	unknown
CP031123.1\|AXH63425.1\|3142018_3146956_-\|DNA-repair-protein	unknown	unknown	gnl\|CDD\|378861
CP031123.1\|AXH63414.1\|3130102_3130639_+\|class-2-integron-integrase-IntI2	unknown	unknown	gnl\|CDD\|131303
CP031123.1\|AXH63419.1\|3134391_3134937_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380063
CP031123.1\|AXH63423.1\|3138764_3141278_-\|penicillin-acylase	unknown	unknown	gnl\|CDD\|239717
CP031123.1\|AXH63418.1\|3133407_3134322_-\|hypothetical-protein	unknown	unknown	unknown
CP031123.1\|AXH63416.1\|3131267_3131507_-\|DUF1819-family-protein	unknown	unknown	gnl\|CDD\|378066
CP031123.1\|AXH63413.1\|3129297_3129771_-\|trimethoprim-resistant-dihydrofolate-reductase-DfrA1	unknown	unknown	gnl\|CDD\|238127
CP031123.1\|AXH63420.1\|3135032_3136538_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|184957
CP031123.1\|AXH63415.1\|3130753_3131080_+\|integrase	unknown	unknown	gnl\|CDD\|131303
CP031123.1\|AXH63426.1\|3147051_3149253_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225177
CP031123.1\|AXH63412.1\|3128678_3129203_-\|streptothricin-N-acetyltransferase-Sat2	unknown	unknown	gnl\|CDD\|366181
CP031123.1\|AXH63407.1\|3126040_3126418_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP031123.1\|AXH63420.1\|3135032_3136538_+\|MFS-transporter	gnl\|CDD\|184957	PRK14995, PRK14995, SmvA family efflux MFS transporter.	2.14603e-113
CP031123.1\|AXH63424.1\|3141443_3142019_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	1.45971e-10
CP031123.1\|AXH63422.1\|3138064_3138727_+\|transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	1.98325e-50
CP031123.1\|AXH63411.1\|3127832_3128621_-\|ANT(3'')-Ia-family-aminoglycoside-nucleotidyltransferase-AadA1	gnl\|CDD\|184296	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional.	1.61477e-174
CP031123.1\|AXH63421.1\|3136580_3137990_-\|MFS-transporter	gnl\|CDD\|341045	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of multidrug resistance (MDR) transporters including various Saccharomyces cerevisiae proteins such as azole resistance protein 1 (Azr1p), vacuolar basic amino acid transporter 1 (Vba1p), vacuolar basic amino acid transporter 5 (Vba5p), and Sge1p (also known as Nor1p, 10-N-nonyl acridine orange resistance protein, and crystal violet resistance protein). MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.89608e-32
CP031123.1\|AXH63414.1\|3130102_3130639_+\|class-2-integron-integrase-IntI2	gnl\|CDD\|131303	TIGR02249, Integrase/recombinase_E2_protein., integron integrase. Members of this family are integrases associated with integrons (and super-integrons), which are systems for incorporating and expressing cassettes of laterally transferred DNA. Incorporation occurs at an attI site. A super-integron, as in Vibrio sp., may include over 100 cassettes. This family belongs to the phage integrase family (pfam00589) that also includes recombinases XerC (TIGR02224) and XerD (TIGR02225), which are bacterial housekeeping proteins. Within this family of integron integrases, some are designated by class, e.g. IntI4, a class 4 integron integrase from Vibrio cholerae N16961. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Other].	3.54716e-72
CP031123.1\|AXH63423.1\|3138764_3141278_-\|penicillin-acylase	gnl\|CDD\|239717	cd03748, Ntn_PGA, Penicillin G acylase (PGA) is the key enzyme in the industrial production of beta-lactam antibiotics. PGA hydrolyzes the side chain of penicillin G and related beta-lactam antibiotics releasing 6-amino penicillanic acid (6-APA), a building block in the production of semisynthetic penicillins. PGA is widely distributed among microorganisms, including bacteria, yeast and filamentous fungi but it's in vivo role remains unclear.	0
CP031123.1\|AXH63425.1\|3142018_3146956_-\|DNA-repair-protein	gnl\|CDD\|378861	pfam12458, DUF3686, ATPase involved in DNA repair. This domain family is found in bacteria, and is approximately 450 amino acids in length. There are two conserved sequence motifs: DVF and SPNGED.	0
CP031123.1\|AXH63416.1\|3131267_3131507_-\|DUF1819-family-protein	gnl\|CDD\|378066	pfam08849, DUF1819, Putative inner membrane protein (DUF1819). These proteins are functionally uncharacterized. Several are annotated as putative inner membrane proteins.	2.15941e-15
CP031123.1\|AXH63413.1\|3129297_3129771_-\|trimethoprim-resistant-dihydrofolate-reductase-DfrA1	gnl\|CDD\|238127	cd00209, DHFR, Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.	3.39419e-57
CP031123.1\|AXH63415.1\|3130753_3131080_+\|integrase	gnl\|CDD\|131303	TIGR02249, Integrase/recombinase_E2_protein., integron integrase. Members of this family are integrases associated with integrons (and super-integrons), which are systems for incorporating and expressing cassettes of laterally transferred DNA. Incorporation occurs at an attI site. A super-integron, as in Vibrio sp., may include over 100 cassettes. This family belongs to the phage integrase family (pfam00589) that also includes recombinases XerC (TIGR02224) and XerD (TIGR02225), which are bacterial housekeeping proteins. Within this family of integron integrases, some are designated by class, e.g. IntI4, a class 4 integron integrase from Vibrio cholerae N16961. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Other].	2.82591e-45
CP031123.1\|AXH63426.1\|3147051_3149253_-\|hypothetical-protein	gnl\|CDD\|225177	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown].	2.48887e-75
CP031123.1\|AXH63412.1\|3128678_3129203_-\|streptothricin-N-acetyltransferase-Sat2	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.87486e-19
CP031123.1\|AXH63419.1\|3134391_3134937_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380063	pfam17937, TetR_C_28, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in CgmR (C. glutamicum multidrug-responsive transcriptional repressor), previously called CGL2612 protein. CgmR (CGL2612) from Corynebacterium glutamicum is a multidrug-resistance-related transcription factor belonging to the TetR family. It regulates expression of the immediately upstream gene cgmA (cgl2611) by binding to the operator cgmO in the cgmA promoter. The cgmA gene encodes a permease belonging to the major facilitator superfamily, a protein family composed of bacterial multidrug exporters, and the pair of CgmR and CgmA confers multidrug resistance on C. glutamicum.	2.43262e-17

>CP031123.1|AXH63416.1|3131267_3131507_-|DUF1819-family-protein
MTPFRYNSDLTSGSLQTRECRIITGLLLQELDEAAWDKAMYKENVLQKRTQSTVRRISSALRKRLEHLSSDFWAFAFLC
>CP031123.1|AXH63415.1|3130753_3131080_+|integrase
MFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRHSFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHVLGQHFAGTTSPADGLMLLINQ
>CP031123.1|AXH63414.1|3130102_3130639_+|class-2-integron-integrase-IntI2
MSNSPFLNSIRTDMRQKGYALKTEKTYLHWIKRFILFHKKRHPQTMGSEEVRLFLSSLANSRHVAINTQKIALNALAFLYNRFLQQPLGDIDYIPASKPRRLPSVISANEVQRILQVMDTRNQVIFTLLYGAGLRINECLRLRVKDFDFDNGCITVHDGKGGKSRNSLLPTRLIPAIK
>CP031123.1|AXH63413.1|3129297_3129771_-|trimethoprim-resistant-dihydrofolate-reductase-DfrA1
MKLSLMVAISKNGVIGNGPDIPWSAKGEQLLFKAITYNQWLLVGRKTFESMGALPNRKYAVVTRSSFTSDNENVLIFPSIKDALTNLKKITDHVIVSGGGEIYKSLIDQVDTLHISTIDIEPEGDVYFPEIPSNFRPVFTQDFASNINYSYQIWQKG
>CP031123.1|AXH63412.1|3128678_3129203_-|streptothricin-N-acetyltransferase-Sat2
MKISVIPEQVAETLDAENHFIVREVFDVHLSDQGFELSTRSVSPYRKDYISDDDSDEDSACYGAFIDQELVGKIELNSTWNDLASIEHIVVSHTHRGKGVAHSLIEFAKKWALSRQLLGIRLETQTNNVPACNLYAKCGFTLGGIDLFTYKTRPQVSNETAMYWYWFSGAQDDA
>CP031123.1|AXH63411.1|3127832_3128621_-|ANT(3'')-Ia-family-aminoglycoside-nucleotidyltransferase-AadA1
MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKPHSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYPAKRELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQDLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPAQYQPVILEARQAYLGQEDRLASRADQLEEFVHYVKGEITKVVGK
>CP031123.1|AXH63410.1|3127259_3127757_-|hypothetical-protein
MRDLLKVVLSLVLAMASGQALADLPIVLVDEARLPYDYSPSNYDISPSNYDNSISNYDNSPSNYDNSESNYDNSSSNYDNSRNGNRRLIYSANGSRTFAGYYVIANNGTTNFFSTSGKRMFYTPKGGRGVYGGKDGSFCGALVVINGQFSLALTDNGLKIMYLSN
>CP031123.1|AXH63409.1|3126827_3127199_-|hypothetical-protein
MSYEPPRDGYTNGYIVDVMYDNRPSKYPAVFRTYVRIPDYVELDNAEELADAIIREVELKEAWLTRVLGNSADPDASVGKWDRRLAQCGGIDEMSSGVQATYFSPNGQLVGLVAYIDAEWMDE
>CP031123.1|AXH63408.1|3126471_3126795_-|hypothetical-protein
MGIAYKLSCHRCGYESDLLYLGQGMAMLPEQIVGTCTCCDNLTTISINESYGVCSLCGAKDRVIFTSYQHEARPRNPCYLERSFKYQCPRCHAFSMEPPDLPEMLWD
>CP031123.1|AXH63407.1|3126040_3126418_-|hypothetical-protein
MSAAKALAYALCDKLESKKVDEVVRNLVSSGWNIREVAWEASSFDHEMPYFDTGRDFDIGFPDTLSSKIEFLTANGSIVQARARLHFKQALIFAKASKHVAALKNSLDYYYGSSVIPPQNHGGYL
>CP031123.1|AXH63417.1|3132122_3133289_+|hypothetical-protein
MEIIFIDVIDKEYEFVCQLYWQVEENGRFSYSMIKIEEKTQLKSKEIKAIVAKSCKAYCLKLKCVACGEKESLRDRSHFSHLSNFEHICVDCIRIENEKERQEKIEYIDNLLFLKKENALSINDLSFENSVFLLALIRCCADENLMYLDSLDNQMYEKLTPNYKFDLLIIEQLYAAGVIAVSSVTDLKYINVSENYICFNNKFMCWEVLIKETDNLSSTIDLLEGKLANIYYLQKNKKSLIELCKKNNLFECFFYLNHEMDEYSFTSFQIGEKTTKNITYLLENLSVGQVFYIISKTVTDAFVYHQKKSTKINKGKAANSVVDAMKRMHERYLANGWSIYSKYRPRHCPQSVLCQVLFVFILQTDDGGIHKSLKQIITDDDKGIFLNN
>CP031123.1|AXH63418.1|3133407_3134322_-|hypothetical-protein
MRKIITTTVPSHKYYYQPQKTNKNFIIDNIKNVKSKNDGDLKFNQPSYKKEYKFNVNVPYLASKDKKTSPLNKKQEPITPVSRTKLEDIKSIDSFVRRIKEENIYFIAIDKKGYIYQGPLNTIGKRKPTNLYLNVTNSLGHGVYGTAYRVGNFVIKVPFYDAYEINPHSNVNRCSSILNELNRNTHFSRAVTLNKGKDVLITKYISGENINDDDAYDFVKQRGRIMFDYGSNGNVKMDSNGKKYVIDADLVAQPTKLKRYPSLETLEIRKIYKNKFIRKPLGATEIKPLYYPEIENLLPKLKKK
>CP031123.1|AXH63419.1|3134391_3134937_-|TetR/AcrR-family-transcriptional-regulator
MGRQRTIDREKLLDAAEDIVLQQGATALIIDAVAKAMGISKGGVQYCFGNKDALIDAMFERWGQSYDEIFNQTIEQDNSPEGQIFAHMQATHQHDKVSMAKGASLMASLLQTPEYLESTRIWYRERLAKLDTSTEKGKQARIVFLATEGAFMLRYMGFMEIDDNEWQSIFSDLESLLKSHS
>CP031123.1|AXH63420.1|3135032_3136538_+|MFS-transporter
MLTDYKRWIVLLLVSSVLFLIVIDVTVLYTALPKLTHDLGATSSEKLWIMNAYPLVVAGLSPAAGMLSDKVGHKQMFLLGLPLFGLASLCAAFSPTATSLILSRGFLAVGAAVSMPATLAIVRHVFLDPKERALAIGIWSAVASGGAAIGPLIGGILLNHFWWGSVFLINVPVVLLVIPFACYLIPKCGGNSDKKIDILGSILVLIGLIGVIYALKELGKPYTDWPAVLVSGVIGVFFLVVFRNRQVKSTSPMIDFTLLKHPKFNAGLMMAVLSIVVIVGVELLLSQRLQLVLGYTPFEAALYIIPIPLASVIAAPLAGMYLHKFGEVKLTVFGFTCTLIGVVGLTMVYQTSTGILLLSFLFLIGFGLGAIFTTASTTVMLNAPDEKAGMAASIEEIAYEIGSVLGVTFMGGLMSAIYTLKLSLPEGITVSDKVYDSIDEALLVSESLPANNAFALINQANIAFDHAFLGVMVATIFVLLISIIVLPYFLRSEKTLTSSLD
>CP031123.1|AXH63421.1|3136580_3137990_-|MFS-transporter
MSNETSTIPQAKWADLLSGTNALLTIALTGGVALHAINIYIVTTILPSVVNDIGGLEYYAWNTTLFVATSIVGSALSSKVLDRFGPKYSYLFALILFSLGSIWCAASPSMLVLLGGRALQGLGGGILFALSYALIRIVFTENLWSRAMGVVSGMWGIATLCGPAIGGIFAESGHWRWAFWALLPVAVFLALIVINQLPKKQTQAPKNSKVPFLAISLLVISVLAISIGSLSESLFINLIGLLIGLAILLTIALLDGKNDRRLLPTGSYSLKSPLGVIFLTMCLLVGGMTTEIYVPYFLQTIHQFSPLTAGYLTAIMAAGWTIGALFSANKTGAIVIRIIRIGPVIILMSLIVLAVLTHNQQLIESWPLFVIYLIAMAGVGLGIGVCWPHLVLHVFKNAPEGEENLASSSIITIQLYATALSAALVGVVVNNSGLINPGGIAGAQQASIWLFALFAISPLLATVLIRKIR
>CP031123.1|AXH63422.1|3138064_3138727_+|transcriptional-regulator
MINASNYFDNLNLTQAVDKVLFCIKTKGPISTAVIANDLNMTGEAARQHIQKLTSLGLVEGAQCLSQTGAGRPRQNWVLTELGHQRFPDTHAQLALQLIDSVRTIFGDEGLEKLINQRETESREKYFARCKNLPLAERLEALAEVRSEEGYMAKVEQDGDSWLFIENHCPICAAATACQNFCRSELALFSEIVGDNGSIEREQYLLNGAGRCVYRVKVKS
>CP031123.1|AXH63423.1|3138764_3141278_-|penicillin-acylase
MKKHLISIAIVLSLSSLSLSSFSQSTQIKIERDNYGVPHIYANDTYSLFYGYGYAVAQDRLFQMEMAKRSTQGTVSEVLGKDYISFDKEIRNNYWPDSIHKQINQLPSQEQDILRGYADGMNAWIKQINTKPDDLMPKQFIDYDFLPSQWTSFDVAMIMVGTMANRFSDMNSEIDNLALLTALKDKYGEQLGVEFFNQINWLNNPNAPTTISSEEFTYSDSQKTKNISQLNQISDYRLTAPMFERTAKDTTGKVIALSSQENNALIAKQYEQSGANGLAGYPTTSNVWLVGKAKASGAKAILLNGPQFGWFNPAYTYGIGLHGAGFNIVGNTPFAYPAILFGHNGHISWGSTAGFGDGVDIFAEQVSPEDPNSYLHQGQWKKMLSRQETLNVKGEQPITFEIYRTVHGNVVKRDKTTHTAYSKARAWDGKELTSLMAWVKQGQAQNWQQWLDQAQNQALTINWYYADKDGNIGYVHTGHYPDRQINHDPRLPVSGTGEWDWKGIQPFANNPKVYNPKSGYIANWNNSPAKNYPASDLFAFLWGSADRVKEIDNRIEAYDKLTADDMWAILQQTSRVDLNHRLFTPFLTQATQGLPSNDNSVKLVSMLQQWDGINQLSSDGKHYIHPGSAILDIWLKEMLKATLGQTVPAPFDKWYLASGYETTQEGPTGSLNISTGAKLLYESLLEDKSPISQSIDLFSGQPQNDVIRKALNTTYQKMIEKYGDNPTNWQTPATALTFRENNFFGIPQALPQENFHQNEYHNRGTENDLIVFTEEGVSAWDVVAPGQSGFISPQGKPSPHYQDQLSLYQQFGKKPLWLNNEELAPYIESTETLIIER
>CP031123.1|AXH63424.1|3141443_3142019_-|rhomboid-family-intramembrane-serine-protease
MSYLSGYPRVKLLTSIVAIFIIVQSVNSLTAGGLTQFGLVPRTEWGLLGIFFAPFIHGSWEHLLSNLPPFIILSALLLHRTIKAYILASLFIIIVGGLAVWLIGRNAVHIGASGWFFGLWGLLIAQGFFRRKWGDIAIALLVLFYFGTMASGLLPTHLYISTESHIAGAIAGAIYAWLSHRYHQKTNNRSL
>CP031123.1|AXH63425.1|3142018_3146956_-|DNA-repair-protein
MSDIQDTDREQEILDSAVAEGGAYEILRKRLTDQGQQLHQKAAQLNEMRLDEFGQSQMDIIGRIRIRTENNCQARDIVRVGEWLLFGYNVFLGLKKETHLEDVFSLYRLIENDNEFDVEAVPYEDTFLSDNRFVQDFTELYTYYKNTQLLQLVERDGKLLASFQIGDRITDVRVFRWSISSDKRKIEYIDNRGERDIALPPAYDFEWQKTTREDTVNGRYPHINILDTVFIETIGGDLTIKCENNTEDGLGIYQEAVLDKNQSLDDAQIEYAQTGSLIILKVLPYREETWRYLVYNTLSQSVQRIDAIGQACVQLPEDHGIIFPGGYYLQNGDYKTFEQSMDGMRFRRLRRSPNGEDVLYVFYSPNQGRIALFNYNLIERTLSVPLIGHGYAMLEDGKMVLFEGEGEEATRVHPMQVWQTPFYSEEFADQQPTRSGFLGRIGNADLVRGISEILHVSKEIEGSQISIARYEQLSQQAKNLLDIYYWFGDEQCLGIGKLLKEITQTSELVLDEYEKVESIRQQSAKSMNEAISRQKSLLSLTLPESWADIQQFVDGLNALSAQRGHLISLREFRYMDLEKLSEMESEIEKNQQYVSQETAVFLASDKALQPFKTQLTVFEEQIEKAQNSAQLDIPMKDMEKMSTDLDMLSNLMASLSFNDVTQQTHIIDAISQIYAQLNQSRARLQQKRKSQSSVETVAQFGAQFRLFSQGITNALSLATDPERCDDQLSRLLVQLEELESQFSNHDEFLDDILAKREELLETFESHKQVLIDDRQRRAQNLVTAADRLLDSLQRRTTRLQSQDELNAFFASDPLALKTREIIEKLREINDNVKADDIDARLKSSRDQAIRVLRDKTDIFEDGGNVIKLGRHRFSVNTQELDLTILPKNEQLWVYLTGTDFQEPIENEQLSQLKPYWSASLESESDTVYRAEYLAYSIIYAATKRQEGLDFDILKNALTSTEKLEKIVRDFASPRYKEGYEKGIHDHDAVALLKKLLPIGESADLLRYSPTARAIAAIYWEQVQNDDFPALWPERARTAMNIHQLFHNDNALLDLQAEIEAGISLFLQDNPIQCQAYEQTQAAEYLSFVLARTPIELVYSKYARELVLALQSRLEEAHMWGDFNRSQQNLGARYAQRWSLVQNWLQGLCSTPEFAHLVPYIPGAIAIIILDKVASARFSEADLYFKVSGLLGEHPTIENQTLALSLDNYFSRMRGQRKRFIPEFRQYQTLRQQIVTEERSRLKLHEYKAKPLSSFVRNKLINDVYLPIIGDNMAKQIGALGEGKRTDLMGLLLMISPPGYGKTTLMEYAADRLGLIFMKVNGPALGHDVLSLDPEQAPNATARQELEKLNLALEMGNNVMLYVDDIQHTHPEFLQKFISLCDGTRRIEGVWKGKTKTYDMRGKKFCVVMAGNPYTESGEVFRIPDMLANRADIYNLGEVLGGMDEAFALSYIENSLTSNPVLAPLALRDLNDLYLFVDKAMGKSVSTNTLSYPYSDAEINEITSVISKLIKLRDVVLKVNQHYIASAAQSDKYRTEPAFRLQGSYRNMNKLSEKVSSVMNNNELERLLDDHYLGEAQLLTTGAEENLLKLAELRGTLTEKDSARWQQIKKDFMRNKSLGGDNADIGDRVVGQLASLVESVQALGNH
>CP031123.1|AXH63426.1|3147051_3149253_-|hypothetical-protein
MDLAALMPFLTIIGGIILVILGFFGLFKAFYIKVPQGTALIVNDMSSQPKVHFTGALVYPVIYKKEFMRISLLTLEVDRRGKDGLICHDNLRADITVAFYLRVNETTEDVLKVAKAIGVDRASDHQAVSTLFSAKFSEALKTVGKQLDLATLFENRQDFRDRIVDVIGKDLNGYALEDVAIDYLEQTPKSALDPNNIFDSEGIRKITEITAIHNIETNQKERDQELAIQKKNVETREASLALERQQADAEARQKREIDNIRAREQAETLRVQEEERLKAEQARIQTQQEIEIREENRMREVEVAQQNRTRAVAIEEERVSRARELEIVAREREVELQRIEKEKALEEERKNISNVIRERVAVEKTVAQEEERIKEVREVSEAERMRQVTVINAQAEAEESLVRQVKKAEADEASAKHRAEEISTMAQAELEASAKQAEAKKRLAEGVEAEHAALGLAEARVRQATAEAEEKEGLVLANITAEKLLAEARGLKEKGLTEAQVMEAKAKAEQQQGFAEAKILEEKLAAQARGEEQQANAKEKLGLADAKVLEEKLAAQARGEGQLGSAQAEVIRQRLKAEADGLTDKFKSMDHLSDTARSHEEFRMRLEKEFEQSMASIDANKEIAREQADVLAAALSKTNIEIVGGDGSFFNTFSKALSLGKAVDGFMDKSSFAKENVEKLINRSKEDKKIDIAALLKNPEVQDLINGFMAAKGANQPAKTVMSKPIPPTDDQL

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Crispr_ID: CP031123_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031123_4

3710008-3710121

Orphan

Consensus_repeat	Method
AATTTTCGTCATCCTTCGAGCTGTAGCGGTGTTGGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031123_4

>merge|CP031123|4|3710008-3710121|CRISPRCasFinder
AATTTTCGTCATCCTTCGAGCTGTAGCGGTGTTGGCTATGCTCGCTACCCCGGGTCACATACTTTTGTATGCTCCCAATTTTCGTCATCCTTCGAGCTGTAGCGGTGTTGGCTA

>CP031123|4|3|3710008-3710121|CRISPRCasFinder
AATTTTCGTCATCCTTCGAGCTGTAGCGGTGTTGGCTA	TGCTCGCTACCCCGGGTCACATACTTTTGTATGCTCCC
AATTTTCGTCATCCTTCGAGCTGTAGCGGTGTTGGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP031123.1\|AXH63908.1\|3704287_3704818_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
CP031123.1\|AXH63915.1\|3710247_3711714_-\|hypothetical-protein	unknown	unknown	unknown
CP031123.1\|AXH63921.1\|3718275_3720090_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223521
CP031123.1\|AXH63912.1\|3707315_3708278_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226965
CP031123.1\|AXH63913.1\|3708264_3709248_+\|enterobactin-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226964
CP031123.1\|AXH63907.1\|3703237_3703792_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185187
CP031123.1\|AXH63918.1\|3714894_3715557_-\|DUF1028-domain-containing-protein	unknown	unknown	gnl\|CDD\|377639
CP031123.1\|AXH63923.1\|3720923_3721694_+\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
CP031123.1\|AXH64825.1\|3703778_3704288_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|185187
CP031123.1\|AXH63920.1\|3717331_3718279_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
CP031123.1\|AXH63924.1\|3721698_3722754_+\|osmoprotectant-NAGGN-system-M42-family-peptidase	unknown	unknown	gnl\|CDD\|132150
CP031123.1\|AXH63906.1\|3702663_3703245_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
CP031123.1\|AXH63909.1\|3704835_3705678_+\|adhesin	unknown	unknown	gnl\|CDD\|185201
CP031123.1\|AXH63919.1\|3715720_3717280_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173858
CP031123.1\|AXH63922.1\|3720089_3720893_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
CP031123.1\|AXH63911.1\|3706343_3707312_+\|siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226966
CP031123.1\|AXH63917.1\|3712557_3713976_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
CP031123.1\|AXH63905.1\|3701897_3702650_+\|molecular-chaperone	unknown	unknown	gnl\|CDD\|185185
CP031123.1\|AXH63910.1\|3705692_3705965_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP031123.1\|AXH63916.1\|3711930_3712434_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|100008

Protein	Function_ID	Function_description	E-value
CP031123.1\|AXH63908.1\|3704287_3704818_+\|type-1-fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	3.55642e-22
CP031123.1\|AXH63923.1\|3720923_3721694_+\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	4.55162e-35
CP031123.1\|AXH63921.1\|3718275_3720090_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.68342e-128
CP031123.1\|AXH63912.1\|3707315_3708278_+\|ABC-transporter-permease	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	3.21218e-135
CP031123.1\|AXH63913.1\|3708264_3709248_+\|enterobactin-ABC-transporter-permease	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	6.38485e-109
CP031123.1\|AXH63907.1\|3703237_3703792_+\|fimbrial-protein	gnl\|CDD\|185187	PRK15287, PRK15287, fimbrial minor subunit StfF.	4.87516e-21
CP031123.1\|AXH63918.1\|3714894_3715557_-\|DUF1028-domain-containing-protein	gnl\|CDD\|377639	pfam06267, DUF1028, Family of unknown function (DUF1028). Family of bacterial and archaeal proteins with unknown function. Some members are associated with a C-terminal peptidoglycan binding domain. So perhaps this could be an enzyme involved in peptidoglycan metabolism.	3.89586e-78
CP031123.1\|AXH63924.1\|3721698_3722754_+\|osmoprotectant-NAGGN-system-M42-family-peptidase	gnl\|CDD\|132150	TIGR03106, trio_M42_hydro, hydrolase, peptidase M42 family. This model describes a subfamily of MEROPS peptidase family M42, a glutamyl aminopeptidase family that also includes the cellulase CelM from Clostridium thermocellum and deblocking aminopeptidases that can remove acylated amino acids. Members of this family occur in a three gene cassette with an amidotransferase (TIGR03104)in the asparagine synthase (glutamine-hydrolyzing) family, and a probable acetyltransferase (TIGR03103) in the GNAT family.	1.80075e-159
CP031123.1\|AXH64825.1\|3703778_3704288_+\|pilus-assembly-protein	gnl\|CDD\|185187	PRK15287, PRK15287, fimbrial minor subunit StfF.	4.71147e-29
CP031123.1\|AXH63920.1\|3717331_3718279_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.96683e-127
CP031123.1\|AXH63906.1\|3702663_3703245_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	8.10236e-15
CP031123.1\|AXH63909.1\|3704835_3705678_+\|adhesin	gnl\|CDD\|185201	PRK15301, PRK15301, hypothetical protein; Provisional.	0.00737596
CP031123.1\|AXH63919.1\|3715720_3717280_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173858	cd08493, PBP2_DppA_like, The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold. This family represents the substrate-binding domain of an ATP-binding cassette (ABC)-type dipeptide import system. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
CP031123.1\|AXH63922.1\|3720089_3720893_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	3.05579e-108
CP031123.1\|AXH63911.1\|3706343_3707312_+\|siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226966	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism].	3.12287e-112
CP031123.1\|AXH63917.1\|3712557_3713976_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	6.54562e-39
CP031123.1\|AXH63905.1\|3701897_3702650_+\|molecular-chaperone	gnl\|CDD\|185185	PRK15285, PRK15285, fimbrial chaperone StfD.	1.11807e-91
CP031123.1\|AXH63910.1\|3705692_3705965_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.28025e-14
CP031123.1\|AXH63916.1\|3711930_3712434_-\|hypothetical-protein	gnl\|CDD\|100008	cd06151, YjgF_YER057c_UK114_like_3, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	6.30762e-57

>CP031123.1|AXH63913.1|3708264_3709248_+|enterobactin-ABC-transporter-permease
MQKVNSSIALPRKGVTPLQRIWILLALSLLSIVLYMTVNLGSNLAYILPHRGYIVLTMIVVAFASGVSTVLFQTIANNKILTPSIMGLEALFILLQTIFVFYTDSFPSSWLLNIGKFLLESTLLVLFSVLLYRWLFVSVKMNINLVLMVGIILGTLFRSVATLLQRLMDPNEFSILQSRMFATFTKGTPELILFTLLITAVVGVLLWRMRYCFDVIALGQANAVNLGINYRQQVTVILLLISILVAVSTALVGPLTFLGLMVANLAYLVAGSSQHRYLLPVSFLLGVIALVGGQLILEYGLNMAGTLSVVIEFVGGIFFIYMVLRRF
>CP031123.1|AXH63912.1|3707315_3708278_+|ABC-transporter-permease
MKTLYLFCGIIALLVLAVLSLFIGAGDVSPVSLFTDPEMQDIFFISRIPRTISLILAGSAMSVAGLIMQLLTQNRFVEPSLAGTTQSASLGLLVVMVLFPAASIMTKMVVASGFALLGTMLFMMLLRRVILKSALIVPLVGIMLGAVISALTIFTAYYFDLLQSLGAWMSGDFSSIIQGRYELLWLVGILTLIACWIADSFTVAGMGREFSINVGLNYRKVMTIGLSIIALISGVVVVVVGALPFLGLIIPNLVSLVMGDNIRKTIPWICLAGGGLVLLCDIIGRLIRYPFEIPASVILGVVGAVIFLYLLLKQQRYAKS
>CP031123.1|AXH63911.1|3706343_3707312_+|siderophore-ABC-transporter-substrate-binding-protein
MFVKSLVSGIALLSALVLAGCDNAKDTSETAQVAEKQTITVEHAQGKTEIPRHPQKVMVMNMETLDIMDALGAPVAGVPQTNVRFPEFLTKYSGSEYVNGGTLFEPAYETLSNAKPDLILGGSRARDAYDKLSGVAPTISLDIDNKNFIGSLTERTNELGALFGKEEQAKKLIADFNTKIEGIKTKAPTAGKAMVILVSGGKISAYGPGSRFGFIFDVLGFEPAYVFTENTGRHGNIVNAELLVKLNPDWLFVIDRDSAIGKSDAQPAAEVLDNALVRKTAAWEKGQITYLDPTAVYIAGGIQTYSQLMDDINTALEKSQAK
>CP031123.1|AXH63910.1|3705692_3705965_+|XRE-family-transcriptional-regulator
MYSENGSEKIHYMVGQRILEKRRELGYTGFQLAQLLGVSQQQISRYERGKIKIDLFHLFKLAFLMGTPIDWFLEDISSQLNKHGNLDDIQ
>CP031123.1|AXH63909.1|3704835_3705678_+|adhesin
MKVFLSLLIGAVMFSSTASAYVFSYITESRPGNNPNNGDADYKYVIARWDPELPTTPNPCFGWSKCYLTISHKHTANGTPGAATVELAEISRYRYMLDVQNIPGVLAKATAPATQWAVHTGVRLQNNQECVGLFYQDRTGVTSNGGLIPGSLCGIAPPPIGACKINNTVPDINFGPISEADLAGQSKQVNISVTCNLSMDVLVVATGVNVTNGRVNLRADNSLYANLYLGGNDTPGENGYKIHVPAGGTNSVTLKAVLGTNGRVQAGQFEGAAALILTVP
>CP031123.1|AXH63908.1|3704287_3704818_+|type-1-fimbrial-protein
MNKLIQCAVAGALLIDVSTAFAVPDNLRIIGNLVEEPCTILPGDENIPMDFFDTPEKNFYAYGETPPKEFVIKLSDCDTTIGKFVEVTFSGTPNLALPGFLALSTSSVASGFAVGLQNSDKTPLALEQKGSKLTLQDGANQLRFYAYLKGEPDAIADKTIKVGPYSAVATFKLDYE
>CP031123.1|AXH64825.1|3703778_3704288_+|pilus-assembly-protein
MIISEGKIMQKIMKRFPLIMGLLVIPASAAMANDVEFTGTLLIPPPCTVFEDKVNVIEYKDIGLHKIDGVRFTKPINYALKCEDNLKGWDLMLTIKGTATDFDTSALETNFRDLGMRITQNGLGFEINKPLKITYGQPPVLEVVPVKRLGVTLPEGGFTATGTLLAEYQ
>CP031123.1|AXH63907.1|3703237_3703792_+|fimbrial-protein
MSDLNKQRYLLASCLVGLLFTSASYAGLPDSRISPSGSTRATVTPGMITVPIKGVVLAPPPCKINGGNIIKVNFDEIMSTRIDGNAYSKPINYNIDCEKRPTSQMKMTLIGIPASFDTGAIETDLPGLGIAFRYNGSKLRLNQEIKFVYPNAPQFEAIPVRDLSTTLTKGGVFHAGVTIKLDYQ
>CP031123.1|AXH63906.1|3702663_3703245_+|type-1-fimbrial-protein
MKRTLQFSTILFSLVPVFTFGISSWDIDGLHGTLTVNGMMTEAPCTMDVTNSKRQEVSLGEIPSYSLRKPGDRAEPVSFELEFRHCIRTESRMKDTRTGRAIWDAMQPVITVSFVAVSDKHFPEMLSVKGVSGLALEVTDAQREDIRLGSRGRPQFLDAPQGTLQYFVTPVRTPEKLTEGSFSAVMDFKVDYE
>CP031123.1|AXH63905.1|3701897_3702650_+|molecular-chaperone
MNIKKIAFFTTTITLSAVLCGQALAAIALDRTRVIYNGAEKTISLNIKNENTELPYLAQGWIEDANGNKIESPLTVLPPVQRVEPGEGSQVKIQSLPDIATLPQDRESVYYFNLREIPPRSKEANVLQIALQTRIKLFYRPKALYATRTDLENPWQEKITLTRKGDAYEVTNPTAYFVTIVDASSKVGGDTVKQFEPVMISPKGNGMLKGSASAMGAKPVLTYINDYGGRPKLTFGCAGTTCKVESSTDR
>CP031123.1|AXH63915.1|3710247_3711714_-|hypothetical-protein
MIKESLKIHGKKQFEIKQKVLFPRKSKEIRYQVDTFFFLPSSLQINPDLYAASNLQRSLKNYIRLRPPTVKLSSLTDENGALNELKQWLQQYNPQNLPSLDEYENRLKRYALTFKRTIRLNIKMVSQTPQRQTPEYLTEFMANIAKCFCAYRELAIPSAKIEEAIHSNAFSYCDEFMTYYTMNYLRDLLADKQIPLREEIRHFWYQEMRYLKKQYPDCFPSDETDAELVTYRRNLLKKYINRYLYLEIRHKRGLPLLLHSIYGIAAAISMIFATVIAFFWQGKYGALSANLFLAMIIGYIFKDRLKEVGREQLYRLFQKWIPDRQLRIYREGIKAPVGICKESFRFINEAMLSPDIREMRQKSHWVNLVNVQRMEDILYYRKDVLLHNRQSVFEKNQSSIADITRFNISDFLKHIDISYEELTVNDDEPAIMGEKVYHIYLCRRITINKKTYNELARLVVNADGIKRLEMLQSLDLLTTDEDIEISPQ
>CP031123.1|AXH63916.1|3711930_3712434_-|hypothetical-protein
MRYKTLLLSLPLILGVASANAADDVKRVPVKGFPISESVEIGAGNSLIFLSGKVPSKISADAKEGVLESYGNTEAQTINVLKQIQANLEGMGLTMNDVVKMQVFLVGGEETQGTMDFAGFMAGYNKFYESEKVTNLPARSTFQVAKLANPAWRVEIEVTAVRPAAKK
>CP031123.1|AXH63917.1|3712557_3713976_-|FAD-binding-oxidoreductase
MKISRRKLLLGVGAAGVLAGGAAVVPMINREGRFESTKSRVPAVAGTEGKLPESADAVIIGAGLQGIMTAINLAEKGLNVVICEKGVVGGEQSGRAYSQIISYKTSPAIFPLHHYGKIQWLGMNEKIGADTSYRVQGRVEVPSSEEDLEISRAWIKSASENPGFDTPLRTRMIEGTELANRLVDAQTPWKIGGFEEDSGSLDPEVVTPTMANYAKSIGIRIYTNCAVRGIETAGGKISDVVTEKGAIKTSRVVLTGGIWSRLFMGNLGIDVPTLNVYLSQQRITGVPGAPKGNVHLPNGIHFREQADGTYAVAPRIFTSSIVKDSFLLGPRFLHVLGGGELPLEFSIGKDLFNSFMMATSWNLDEKTPFEEFRTATNTPNNEHLDGVLERLRKEFPVFKESKVVERWGGTVAPTDDEIPIISTVEQYPGLVINTATGWGMTESPASGRLTAELLMGEKPFIDPTPYKLSRFN
>CP031123.1|AXH63918.1|3714894_3715557_-|DUF1028-domain-containing-protein
MTFSIVARCPVTGKIGAATATGGPAVGALVLHGESQTGAIATQAMTNPIAGLTGIEYLQQGHNANKSLDYLVTQDIGCEQRQLIILDNHGGTADWTGQDCLPWCGSLSEPNFAIAGNMLAGEQVLDAIHQSYYKNAHQDLADRLLIAMQAGADEGGDYRGIRSAALKIWNNRQYADIDIRCDWSEAPLSALVTILQQVRSEDYANFFAQIPTGNEYITNN
>CP031123.1|AXH63919.1|3715720_3717280_+|ABC-transporter-substrate-binding-protein
MKMRLCRWIASLWLLCFISLPTLAVNHPNVLLLGQVAEPQSLDPQVATAANDSRILVNLYEGLVRNADGTLTLEPALAQSWSISDDGLTYTFHLREDIKFHDGSPFNADAVKFTFERMLDNQHPYYHTGPFPLSFFFSAIDKITTPDDRTVVFTLKEPFAPFLSNLATPAGLIVSPTAVKQYDKDFSRHPSGTGPFKFDEWTANQRVVVSANENYWDGKPSLEHVVFRPITDANTRVAEMLSGGIDAMVEVPADNVPLFVNDDRFDVYEAVGPHVWYAMLNASEPPFDDVRVRQAVNYAVNKDNIVKYILQDSAGVAQGPIPSAFDWAFDAETKAYPYDPEKARQLIAEAGAQGQKVIFYVTEGGSGMLDPIPMATAIQADLKAVGLSVEIQTFEWNTYLSKVNAGLKQAHMAEMAWMTNDPDTLPFLTLHSASWPDKGGFNSGYYSNKQLDRLLDKARVTNNLEERAQLYRQVQKIVHQDAPWLFVANWKQNAVANEHVKHFKLQPNFNLLLKDVRKD
>CP031123.1|AXH63920.1|3717331_3718279_+|ABC-transporter-permease
MWLYCLKRVLATIPILIGLTLIVFFIMAMIPGDPAQALLGPWATPENVARVKVELGLDKPLYQQYFIWMNNLISGDFGRSFVLNRPVVDEVLERFSATLILGGSALLLSSILGLLAGVLSAIRQFSWSDRFITLAVLLGISMPSFWIGLLMIMLFSVQLQWFPASGMYDIWQGGGLSDLLHHLVLPAVTLSLVATGVIARLTRTAMLEVLRLDFIRTARAKGLSERRVIFRHAFRMALVSVIPVIGIQAGFVFGGAVYIETVFQWPGLGAMLVKAVATRDLFLVQGGVLIAAASYVFINLLADVVQAMLDPRLKS
>CP031123.1|AXH63921.1|3718275_3720090_+|ABC-transporter-permease-subunit
MSQSVTPVIQHRHRQSIGSLLLANRLATLGLFILVIIMLLAFLAPWLPLADPDKTDLVNRLLPAFSPDHLLGTDHLGRDILSRLLWGTRVSLLVGISATLIAAIFGTLIGLVAGYVGHRTDTLLMRCIDMLMAFPYILLALAIVAVLGPGLLNALYAIALVNIPFFARNIRGLTVGLRDRDFIQAARLSGKNHLQVLLTEVLPNVLPIIVVTMSTTIGWMILETAGLSFLGLGTQPPNADLGSMLGQGRAQMFVAPHVALVPGIMIFLIVISFNLLGDGVRDILDPRLKSGALQRSQPMTQTDRVNIPAKTGDKQAVLEVKELSVAFRQGNQLRPTVKGISFTVGAGECLGLIGESGSGKSVTALSVMGLLASPPALITAGGIYVEHEEMLSLPLSVMQRRRGAKVSYIFQDPLTTLHPQFTIGVQLREAITAHQSLSLYEAKNKAIELLDSVGIPDAQERFDAYPHELSGGQRQRVGIAMALANDPVLIIADEPTTALDVTVQARILELLNQLRRERGVALLFITHDFAVINQICDRVAVMQQGEIVETGDTQTVLRQPQHPYTQRLIASVPKLGEGRGFLKQVQQLYGHQPNGNDLASTQEA
>CP031123.1|AXH63922.1|3720089_3720893_+|ABC-transporter-ATP-binding-protein
MKKVIEVNQLVKTFGQPKSLFHPRGRQVHALKNISLSLYEGETLAVVGESGSGKSTLARILVGLERETSGEISVLGQTRAEWLQQGARAFGQAIQYVFQDPVASLNPRKTIGETLTVPLKYLKHMSASQRAKRLAELLEAVNMPIDALACYPHEFSGGQAQRLAIARALAADARILVLDEPVSALDVSVQAQVLLLLEQLKQQFSLSYLFISHDLAVVESIADRVAVLYLGDLLECRDTRSLFAAPEHEYTRNLLASAPRIRVDSVV
>CP031123.1|AXH63923.1|3720923_3721694_+|FadR-family-transcriptional-regulator
MSTNKPTTIEPVRIKRTDEIVNAIKETIMANNLIPGDRLPQEKELIEHYNASKSTVREALKSLEVQGLIKTKTGPGGGAFIDSMTESRAMSLLSNYLFTRDISIKDIYTLRKLLEPVVAVSAIDNIDNEGIQKLYDTIAIYDHEPADENERWQQRMAELDFHAVVASYSDNVLLVFICHFLQRLLKDLAVCKDIYLKPEPVDRRQGIEYQYQLIEALRRKDVAKVQSVMEAHMAYAEQAMLALQATLQERFLSEDR
>CP031123.1|AXH63924.1|3721698_3722754_+|osmoprotectant-NAGGN-system-M42-family-peptidase
MIDKVYLTSVLKTLLCTPSPVGMTEQAVAQTHQWLTELGFTPKYTRRGVLYITLGSEEPKRALAAHLDTLGAMVTQLKPNGRLALRNTGTWAARFAEGARVTVFSDNHQYRGTILPLKASGHRFNTEVDTQIADWDNLEIRLDAPCYNFADLQSHGLNVGDIVAVDAQPEFIDNGFIVSRHLDDKAGCAVMLAALKSLVDDGIVPAVPCQMMFTISEEVGIGGTHGFGPQVQELLAIDNSVSAPDQTTRDDALTLAFRDRTGPFDLAITRHLLQLCQQYDIPHVRDTFKHYRSDSAAAIDAGWDIRAALACFALDSSHGWERTHLDSLVALATLVRRYIESDLVPLPGQSL

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Crispr_ID: CP031123_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP031123_5

3931158-3931257

Orphan

Consensus_repeat	Method
AGTCACATACTGGTGTATGCTCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP031123_5

>merge|CP031123|5|3931158-3931257|CRISPRCasFinder
AGTCACATACTGGTGTATGCTCCTTTTTTTCGTCATACTTCAAGCTGTGCCTGTGTTGGCTTCATTCGTCAACCCTAGTCACATACTGGTGTATGCTCCT

>CP031123|5|4|3931158-3931257|CRISPRCasFinder
AGTCACATACTGGTGTATGCTCCT	TTTTTTCGTCATACTTCAAGCTGTGCCTGTGTTGGCTTCATTCGTCAACCCT
AGTCACATACTGGTGTATGCTCCT

Protein	Signature genes	Signature genes Name	Protein_function
CP031123.1\|AXH64130.1\|3937612_3937978_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132616
CP031123.1\|AXH64115.1\|3922259_3924605_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	unknown	unknown	gnl\|CDD\|236842
CP031123.1\|AXH64131.1\|3938010_3938349_-\|transcriptional-antiterminator	unknown	unknown	gnl\|CDD\|132621
CP031123.1\|AXH64116.1\|3924837_3925488_+\|isoprenoid-biosynthesis-protein-ElbB	unknown	unknown	gnl\|CDD\|236980
CP031123.1\|AXH64114.1\|3920552_3922037_-\|glutamate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|273553
CP031123.1\|AXH64118.1\|3926282_3926858_-\|osmotically-inducible-protein-OsmY	unknown	unknown	gnl\|CDD\|182907
CP031123.1\|AXH64119.1\|3926867_3927458_-\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
CP031123.1\|AXH64122.1\|3929767_3930640_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
CP031123.1\|AXH64126.1\|3934577_3935717_-\|amidohydrolase/deacetylase-family-metallohydrolase	unknown	unknown	gnl\|CDD\|236423
CP031123.1\|AXH64123.1\|3931515_3932613_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|223425
CP031123.1\|AXH64128.1\|3936498_3937290_-\|DUF4311-domain-containing-protein	unknown	unknown	gnl\|CDD\|274659
CP031123.1\|AXH64127.1\|3935845_3936496_-\|DUF4310-family-protein	unknown	unknown	gnl\|CDD\|132618
CP031123.1\|AXH64132.1\|3938831_3940802_-\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226234
CP031123.1\|AXH64124.1\|3932739_3933480_-\|oxo-acid-lyase	unknown	unknown	gnl\|CDD\|188342
CP031123.1\|AXH64120.1\|3927573_3927954_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
CP031123.1\|AXH64113.1\|3919972_3920467_+\|ClpXP-protease-specificity-enhancing-factor	unknown	unknown	gnl\|CDD\|236987
CP031123.1\|AXH64125.1\|3933481_3934594_-\|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase	unknown	unknown	gnl\|CDD\|273623
CP031123.1\|AXH64121.1\|3927993_3929706_-\|penicillin-binding-protein-activator-LpoA	unknown	unknown	gnl\|CDD\|225649
CP031123.1\|AXH64117.1\|3925496_3926219_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	unknown	unknown	gnl\|CDD\|234603
CP031123.1\|AXH64129.1\|3937316_3937613_-\|DUF4312-family-protein	unknown	unknown	gnl\|CDD\|213831

Protein	Function_ID	Function_description	E-value
CP031123.1\|AXH64130.1\|3937612_3937978_-\|hypothetical-protein	gnl\|CDD\|132616	TIGR03577, EF_0830, conserved hypothetical protein EF_0830/AHA_3911. Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	1.43448e-60
CP031123.1\|AXH64115.1\|3922259_3924605_+\|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	0
CP031123.1\|AXH64131.1\|3938010_3938349_-\|transcriptional-antiterminator	gnl\|CDD\|132621	TIGR03582, EF_0829, PRD domain protein EF_0829/AHA_3910. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. This protein contains a PRD domain (see pfam00874). The function is unknown. [Unknown function, General].	5.47605e-31
CP031123.1\|AXH64116.1\|3924837_3925488_+\|isoprenoid-biosynthesis-protein-ElbB	gnl\|CDD\|236980	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB.	2.51528e-138
CP031123.1\|AXH64114.1\|3920552_3922037_-\|glutamate-synthase-small-subunit	gnl\|CDD\|273553	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.	0
CP031123.1\|AXH64118.1\|3926282_3926858_-\|osmotically-inducible-protein-OsmY	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	3.07338e-103
CP031123.1\|AXH64119.1\|3926867_3927458_-\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	3.39842e-134
CP031123.1\|AXH64122.1\|3929767_3930640_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
CP031123.1\|AXH64126.1\|3934577_3935717_-\|amidohydrolase/deacetylase-family-metallohydrolase	gnl\|CDD\|236423	PRK09237, PRK09237, amidohydrolase/deacetylase family metallohydrolase.	0
CP031123.1\|AXH64123.1\|3931515_3932613_+\|4Fe-4S-binding-protein	gnl\|CDD\|223425	COG0348, NapH, Polyferredoxin [Energy production and conversion].	1.82159e-42
CP031123.1\|AXH64128.1\|3936498_3937290_-\|DUF4311-domain-containing-protein	gnl\|CDD\|274659	TIGR03580, EF_0832, conserved hypothetical protein EF_0832/AHA_3913. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Unknown function, General].	6.27572e-148
CP031123.1\|AXH64127.1\|3935845_3936496_-\|DUF4310-family-protein	gnl\|CDD\|132618	TIGR03579, EF_0833, conserved hypothetical protein EF_0833/AHA_3914. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.	5.77034e-95
CP031123.1\|AXH64132.1\|3938831_3940802_-\|PRD-domain-containing-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.12294e-56
CP031123.1\|AXH64124.1\|3932739_3933480_-\|oxo-acid-lyase	gnl\|CDD\|188342	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	7.69891e-140
CP031123.1\|AXH64120.1\|3927573_3927954_-\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	4.06186e-45
CP031123.1\|AXH64113.1\|3919972_3920467_+\|ClpXP-protease-specificity-enhancing-factor	gnl\|CDD\|236987	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional.	2.04207e-79
CP031123.1\|AXH64125.1\|3933481_3934594_-\|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase	gnl\|CDD\|273623	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. [Unknown function, Enzymes of unknown specificity].	0
CP031123.1\|AXH64121.1\|3927993_3929706_-\|penicillin-binding-protein-activator-LpoA	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	3.84756e-132
CP031123.1\|AXH64117.1\|3925496_3926219_+\|monofunctional-biosynthetic-peptidoglycan-transglycosylase	gnl\|CDD\|234603	PRK00056, mtgA, monofunctional biosynthetic peptidoglycan transglycosylase; Provisional.	1.0798e-125
CP031123.1\|AXH64129.1\|3937316_3937613_-\|DUF4312-family-protein	gnl\|CDD\|213831	TIGR03578, EF_0831, conserved hypothetical protein EF_0831/AHA_3912. Members of this family of small (about 100 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	4.95194e-34

>CP031123.1|AXH64122.1|3929767_3930640_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MNQPNQAVVMASTLYIVPTPIGNMKDITQRALDVLKHVDLIAAEDTRHSGILLQNFAINARLFALHDHNEQQKADQLISLLQQGDSIALVSDAGTPLINDPGYHLVNRCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKTKGRKDVLQSLEQETRTLIFYESTHRLLDSLADMVEVWGPERHVVLAREITKTWESIEGRPVGELLAWVKEDENRHRGEMVLIVEGYKKPEDDSAISPDVVRTLNLLQKELPPKKAAAITAEIYGLKKNMLYKLMLDNQADE
>CP031123.1|AXH64121.1|3927993_3929706_-|penicillin-binding-protein-activator-LpoA
MRPSIFLHLKKGLMCTAMLSTFALSGCQIVSEYFPSTQKTPEQSTSDNASHYQAIIDAAQGKPSMEAIRAYISQEPLLKTAAERQANIDGLWQMLTQLTPEQIHGVGADENILQGWVDLLDIYQNNRDDTDALLAGYNDWKMRYSNNPAVTTTPTLLQQAMIPQVGKTPKIALFLPMSGQGKVFGQAIMQGFMDAQKGLPQGSAPQAAVTPASSGNDVLDQIYEQVAATTGNAPTTSDSDVVTSALRIDAAPVNTQSVKVFDTTNKQMPELIEQAKNEGFNLIVGPLLKSDVQSITQMGAPVSVLALNELDANQLQPRPNLCYFSLSPEDEAQNAAAYMKAEGKQMPLVLVPANAFGDRIAKAFAQGWQEKGGGTVLMQTFGSIPSLKESINRGAGIRMTGTPVNTGTQSIDTQSIDPQYIDSTGAIDSVYIVATRDELTLIKPMIEMAISSRSRPALYTSSRSNQAGSGADYRFEMDGVKFSEIPLLAGANNNLRKQAQQKLSNDYSLFRLYAMGIDAWSLANNYDKLQQSGQFRINGASGTLSTTPNCVVYRELPWLQFKQGKVVSAQ
>CP031123.1|AXH64120.1|3927573_3927954_-|YraN-family-protein
MKIMPKAIQWLTGRYYENQVLAFLQQQGLTFVERNARNRGGEIDLIMRDNTGWVFVEVRFRKNCDYGDALLSVNWHKRRKLLAAAKIWLSKRQESFETSACRFDICAITGNRFDWVQNAFNENDVY
>CP031123.1|AXH64119.1|3926867_3927458_-|DnaA-initiator-associating-protein-DiaA
MLDRIKVCFTESIQTQIAAAEALPDAISRAAMMMVQSLLNGNKILCCGNGASAATAQRFAASMIHRFETERPSLPALALNTDNAVLTAISGSKQPSEIYAKQVRALGQHGDVLMAISTHGNSSDIIKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSQRSVRIQEVHLLTVNCLCDLIDNTLFPHQDD
>CP031123.1|AXH64118.1|3926282_3926858_-|osmotically-inducible-protein-OsmY
MRLIPIFAIVISTVLLQGCIGAAVVGSAAVATKSATDPRTVGQQVDDGTLEARVSGQLNKDKDITGKARIIATAYKGNVLLTGQSPDMAWAERAKQIASNVDGTIAVYNEVRSGEPVDLGTASKDTWLTTKVKSKILASDSVKSGSVKVITENGEVFLLGVLTRQEGDAAAKIASETDGVRRVTTAFTYLN
>CP031123.1|AXH64117.1|3925496_3926219_+|monofunctional-biosynthetic-peptidoglycan-transglycosylase
MRTIVSKLWHWLKKITFSLLVVWICSVVLFKYIPVPFSAVMIERQITAWVNLNFSYVSRSEWVDENHISPYVYLAVIAAEDQNFPHHWGFDLDAIERAYKHNLSNKQTIRGASTISQQTVKNLWLWDGRSWLRKGLETVMTPIMELLWSKQRVLTVYLNIVEFGDGVFGVEEAANKFFNKPASKLSMSEAALLAAVLPNPHRYSVKNPSSYVLKRQAWILNQMHLLGGKNYLKINQLMDE
>CP031123.1|AXH64116.1|3924837_3925488_+|isoprenoid-biosynthesis-protein-ElbB
MKSIAVILSGCGVFDGSEIHESVLTMLALSQNNAEIHFFAPDELQPTVINHMTGESKSEKRNQMEESSRITRGKISPLSSADASTLDALIIPGGFGAAKNLCDFAVKGSECVINKELLSLVRQMHQQKKPLGLMCIAPVMLPKMLNTSVVLTIGNDSETIAQIEIMGGKHIECAVDDIVIDEVNRVVTTPAYMLAQSISEANTGINKLVKKVLEMA
>CP031123.1|AXH64115.1|3922259_3924605_+|aerobic-respiration-two-component-sensor-histidine-kinase-ArcB
MKVLRGLAQYYVDLMMKLGLVRFSLLLAAALVVLAMIMQMAVTIVLRGHVDSLDMVGSIFFGLIITPLAVYFLSVVVEQLEESRQRLSRMVDKLEVMRKRDADLNIQLQGNIEQLNLEILEREKAERAHLELLEQLKQEMKYREQTQIELEQQSVLLRSFLDASPDLVYYRNENNEFSGCNRAMELLTGKSEKHLVGLTPLDIYDVEIASKVMETDEKVFRHNVSLTYEQWLVYPDGRKACFELRKVPFYDRVGKRHGLMGFGRDITERKRYQEALENASREKTTFISTISHELRTPLNGIVGLSRILLDTDLTSEQSSYLKTIHVSAVTLGNIFNDIIEMDKIERRKVQLDNQPITLSEFVNDLENLSGLLVQPKGLKFVMDVAPALPKTVLTDGTRLRQVLWNLIGNAVKFTQKGEVKLSIWQEAENKLFFRVQDSGIGIPKDELDKIFAMYYQVTDSAGGKPATGTGIGLSVSRRLAQNMGGDIQVESEIGQGSTFTLSITAPVVENNVIEQQDPEDDYPLPALHILLVEDIELNIVVACSVLENLGNTVDVAMNGKDALEMFAPGEYDLVLLDIQLPDMTGLDISRQLKQQYDKQDLPPLIALTANVLKDKKEYFDAGMDGVLSKPLSVPALTQVIEQFWGEQSVQPEEASNDREASSVDESILDCDMLEQYIELVGPKLIYDGLDVFEKMLPGYLAILDSNMVAKDQKGIVEEAHKIKGAAGSVGLKNLQKIAQQIQSPELPAWWDNVQEWVDELKQDWKADIETLRNWVDERTKK
>CP031123.1|AXH64114.1|3920552_3922037_-|glutamate-synthase-small-subunit
MGKAAKITVKAQAISSKIRQNSVRNTMSSNIFGHQRREPLKKALAIRKIAFTEIYESDNTVDVQQQASRCLSCGSPFCEWKCPLHNPISKWLKLAAEGKIIEAAELSHHTNSLPEICGRVCPQEKLCELACVLHDTTGSITIGHIERYVNDTAFEMGWRPTSSPIRSVNKCVAIVGAGPAGLSCADVLIRNGVNVVVFDKHPEIGGLLTFGIPSFKLEKKLMVQRREIFTEMGIQFQLNTEVGTDISLDELLCTYDAIFIGTGTYQAIRGNVPKKPIQGVFESLPYLIANTRHLMQLPTPNDEPYINLHSKSVIVLGGGDTAMDCVRSAIRQGAKQVSCLYRRDEQSLPASRKEVVNALDEGAQFHFNLQVTQFVVNEQQQLTGVYATRTQNGKLENGRYQLELIDDSTFFIEADAVIVAYGFAPHDQVWLNNALIKRDKYGHILANRNSPIPFQTSHEKVFAGGDIIRGSDLVVTAIDDGRNAAEGILLFLGV
>CP031123.1|AXH64113.1|3919972_3920467_+|ClpXP-protease-specificity-enhancing-factor
MMEMTAMSPRRPYLLRAHYEWLLDNDMTPHLVVDVTVPAVNVPMEFARDGQIVLNVAPRAVGNFEITNDEVRFNARFGGIPRQVYVPMAAIMAVYARENGAGMMFEPEAAYDAELSAGFEHVEEPEDNITLVHEAESVDEKSHEPSGDEPPRPPKGRPSLRVVK
>CP031123.1|AXH64123.1|3931515_3932613_+|4Fe-4S-binding-protein
MLKRCADMIEKPRIRYQRRPGTTGGKLPWNDWRNASTWRKFVQVTLLAINLYIGITFYYWVRYYETGGATLYLPRPGGIEGWLPIAGLMNLKYTLETGSFPVIHAASMFLLVSFIVISLLFKKAFCSWMCPIGTISEYTGKLGKKLFRYQNQISLPKWLDIPLRGLKYLLLGFFLYIAFSMSAQMIQYFMMSPYGIIIDVKMLDFFRYISLFALITVVVLVVASLFIRNAWCRYLCPYGALLGLFSLFSPFKIRRNRENCIDCGKCAKNCPSRIPVDKLITVKTVECTGCMTCVESCPVASTLDFSLQVPTKKRQFRLSGMLMAILTLAILFITIGIAMYFGVWGSPVPDNYWFHIIPNARTIGH
>CP031123.1|AXH64124.1|3932739_3933480_-|oxo-acid-lyase
MKLSPNFYRDRVCLNVLAGSHQNAKDIYAAAETFVVVGVLSKNYPDLESAIADMRIYAQETDNALSVGLGAGDPNQSTMVSLISKEVQPQHVNQVFTGAPISRALLGQNETFVNALISPTGTVGMVKISTGPLSSQAPDGIVPIETAIMMLKDMGADSVKFFNMKGLTYIEEYKAIAKACAEFDFSLEPTGGIDLDNFAEILQIALDAGVKKIIPHIYSSIIDKESGNTRPEDVRQLLQMVKQAVN
>CP031123.1|AXH64125.1|3933481_3934594_-|DgaE-family-pyridoxal-phosphate-dependent-ammonia-lyase
MQSIYDKYQLKHVINASGRMTILGVSTPTPEVVERVAYGLNNYFEIKDLVNKTGEYIASLLNVEAAVVVSCASAGIAQAVAAVIVQDDDDLLLNLHSSDKVVPREIILPKGHNVNFGAPVDTMVSLGGGKVVEAGFANECNAAQLAAKITPNTAAILYIKSHHTVQKSMLTVEQAAKVAHDHQLPLIVDAAAEEELTAYYQAGGDIVIYSGAKAIEGPTSGLVIGKKQYVEWIKRQSQGIGRAMKVGKEGILGLTLAIEQYLTATKETGAEMVNRMSQFISDLNAIKGISAQIVWDAAGRDIARTEISFDEKTIGKTTYQIMAELKQGDTAIYFREYKANEGKVEADIRSVSTEQLNVISKNIRLLVEGI
>CP031123.1|AXH64126.1|3934577_3935717_-|amidohydrolase/deacetylase-family-metallohydrolase
MYTLIIKHGKCIDGTIIDILIRDGKIEAAGPELANNQQAEKVIDLQGKTYVSAGWIDSHAHCFVESPIYFDDPDLAGAAGGVTSLVDAGSVGADDIDKFYQLTQKSKTNVFSLLNISRIGIIAQNELSDMNNINETCFQDAIERHSGFVVGMKARMSKSVVGENGIAPLVKAKEMQKKHHLPLMVHIGNNPPDIDEVADLLTRGDIITHCFNGKPNKILGEDGYLKPSIARALARGVILDVGHGGESFSFKVTEQAMRIGTYPDIISSDIYHRNRVNGPVYSLAFVMTKFLCMGFSAEQVLRCVTEKAANFLSLPAKGYLRPGFDADITLFDLKEEQTELTDAEGEQRIGTHRFVPLAAIVGGKHIIHAQGESEHAIDL
>CP031123.1|AXH64127.1|3935845_3936496_-|DUF4310-family-protein
MTTEINKQDFWYAEWSFPIFVGLLSAGSFAGTHMYVVYGFGAFNEVAFVAMLRAGLDTGVYGAVAAFGASFLFARIIEGSLVGILDIGGALQTGIGLGVPALFLAAGWDFLVTNFWMSLLTGLFLGVLIGLLIVFARKFTIAQANSTFGADVMMGAGNTSGRFLGPLIILAAMAASIPIGIGSLIGALIFYVWQKPVAGGAILGAMLFGYFFPIVA
>CP031123.1|AXH64128.1|3936498_3937290_-|DUF4311-domain-containing-protein
MSETASFLEILGMSLIIGGLCGFGLGAGAARMFHAPTIQGMGAFRTLGELNACEGDPASHFSFGLGFFFNAWASSVAAGAFTQDVDHRIIPNWGAAALLTKNRSVADTLHNPKKMAIACAIIGALVVAFLNTTASAVPAALQTTAINVLVPAANLLVNTVMPVIFWLAAMDAGRRSGFWATLFGGCAQLIMGNAIPGLVLGILIGKGVDDNGWNRITRTMMVTVVLLFVLSGFFREFDLKMITSFNLDKPLWLEYVHGLLSGK
>CP031123.1|AXH64129.1|3937316_3937613_-|DUF4312-family-protein
MKKSIETVVRVTGQGDTKQKAIADALNSIQKTVLKNSTDIILRIEPKDVEVISAHSHSRTEKFLFLFLPRKREHFRVVLDVSLDVTLLSVNEIPFTEQ
>CP031123.1|AXH64130.1|3937612_3937978_-|hypothetical-protein
MKQIVVVIGDRLGKGQKVAAGVEAAGGKAVVVPGVAADMKLGDVMNAEQADLGISFCGSGGAGAITAQTKYGYKARYGMRSIEEGETAIADGCNVLGFGFMDKEELGERLVKAFNKKYGNA
>CP031123.1|AXH64131.1|3938010_3938349_-|transcriptional-antiterminator
MSESVVVFKMLEHNLDIDEVTQKLLAVITDWLKQEGCYTTDVQQQMLESHLRAMVGRAKTGEALPEVDISLFDEISEHSITLAQRVVDTLPGLAPEETYLLSVHFEVARSND
>CP031123.1|AXH64132.1|3938831_3940802_-|PRD-domain-containing-protein
MLFCFDFKGVSVALFTQQRHNQIFAQILNEVVPQDELAKNFSVSTRTIRSDINEINELIQPYSAHIVYERGRGYRLKIEDEALFATFTQQNDEDNHIPRTSKERIDALLLKLLMLSLPVKLDDIAEEWFISRGTLQQDMGAVREQLQKYQIALESIPHQGIRLNGSEWAVRACMTETLWRRYSAQITPDLTTFRPDCLDNLDLTYIDKVLHNSMNRFDIRISNEGHLYLVFNCAVTILRITRGHELTTAVKDDDSEEAIRKACGEISKGLIYFLGNDLSGAELSYLHDQIIAQRISHQDSSTQKNGTHNELCEYILNYINELYNYDLRNDEKLKKDLNTHLAALITRLQYHISTPNPLLSDIKQYYPFAYDVTLSALTSASKQLLPHPISEDELGYLAVHIGVSLERNYGAGSIRQTEVLVVTDAGNSTFRVVESKIMREFPQLKFSRGLTLQEYESLDEVSEDFVITTVRISEKNKPVIKIAPFPTPYQLEQVGRLAMVDQTRPYIIERFFDERFFMVINEKISQEALFQMVCHKLQQEGYVTPDFYPSLQERESIVSTLLGEGIALPHSLGLLANKTVVATVVAPKGIEWNKETKENAYVIFLLAISKTDYEEAMAIYDLFVTFVKEKTTRRLVSVKNFNEFQVIAKDSLARIL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP031123_1	1.2\|1475340\|32\|CP031123\|PILER-CR,CRISPRCasFinder,CRT	1475340-1475371	32	MW057862	Providencia phage PSTCR7lys, complete genome	1033-1064	0	1.0
CP031123_1	1.2\|1475340\|32\|CP031123\|PILER-CR,CRISPRCasFinder,CRT	1475340-1475371	32	KY420199	Proteus phage vB_PvuS_Pm34, complete genome	12679-12710	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_KX774387	Providencia rettgeri strain 30905 plasmid pC131, complete sequence	10387-10419	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP053895	Proteus mirabilis strain JPM24 plasmid pJPM24, complete sequence	72648-72680	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_KU963389	Escherichia coli strain ECO37 plasmid ECO37P1, complete sequence	15133-15165	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP047288	Proteus cibarius strain G11 plasmid p152, complete sequence	62060-62092	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP044485	Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-2, complete sequence	28402-28434	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP025853	Escherichia coli strain 510016 plasmid p510016_36, complete sequence	25816-25848	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_KT754165	Shigella dysenteriae 1 strain 93-531-1 plasmid p93-531-1, complete sequence	23240-23272	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP053372	Proteus cibarius strain G32 plasmid pG32-177, complete sequence	57315-57347	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP024247	Escherichia coli O27:H7 strain B4103-1 plasmid unnamed2	64739-64771	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP053043	Proteus cibarius strain HNCF44W plasmid pHNCF44W_NDM-1, complete sequence	95158-95190	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	JX469830	Uncultured bacterium plasmid pG527, complete sequence	41349-41381	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP013819	Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence	10767-10799	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP025925	Escherichia coli strain 520873 plasmid p520873_36, complete sequence	13633-13665	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP025875	Escherichia coli strain 503458 plasmid p503458_37, complete sequence	10830-10862	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP013795	Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence	10767-10799	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP023380	Escherichia coli strain 127 plasmid p43, complete sequence	15396-15428	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP011314	Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence	172056-172088	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NC_008357	Pseudomonas aeruginosa plasmid pBS228, complete sequence	68063-68095	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP027138	Escherichia coli strain AR_0369 plasmid unnamed2	74789-74821	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP022673	Shigella sonnei strain 866 plasmid p866, complete sequence	78315-78347	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP045128	Acinetobacter indicus strain XG03 plasmid pXG03-X3, complete sequence	89271-89303	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_LT985250	Escherichia coli strain 170 plasmid RCS38_p, complete sequence	152291-152323	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_MK360096	Salmonella enterica strain 13-SA02717 plasmid pSE13-SA02717, complete sequence	17850-17882	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP053897	Providencia rettgeri strain YPR31 plasmid pYPR31, complete sequence	75880-75912	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_MF150120	Klebsiella pneumoniae strain A64477 plasmid pKP64477d, complete sequence	40084-40116	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_KX756453	Klebsiella pneumoniae strain 1194/11 plasmid pKP1194a, complete sequence	42453-42485	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NC_015472	Escherichia coli plasmid pECTm80, complete sequence	13464-13496	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP013800	Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence	12090-12122	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	MG516911	Proteus mirabilis plasmid pPm60, complete sequence	57128-57160	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP003997	Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13d, complete sequence	42619-42651	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP054380	Escherichia coli strain SCU-175 plasmid pSCU-175-1, complete sequence	38153-38185	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NC_002525	Escherichia coli K-12 plasmid R721, complete sequence	10525-10557	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP048015	Acinetobacter towneri strain 205 plasmid pAT205, complete sequence	49215-49247	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP034054	Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 plasmid unnamed1, complete sequence	140941-140973	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP047114	Proteus mirabilis strain SCBX1.1 plasmid plas1.1.2, complete sequence	46467-46499	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP034046	Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 plasmid unnamed1, complete sequence	150963-150995	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP027700	Klebsiella pneumoniae strain KP30835 plasmid unnamed5, complete sequence	7471-7503	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP053899	Proteus mirabilis strain YPM35 plasmid pJPM35-1, complete sequence	116699-116731	0	1.0
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_MK264770	Klebsiella pneumoniae strain KP89 plasmid pKP89, complete sequence	42620-42652	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_KX774387	Providencia rettgeri strain 30905 plasmid pC131, complete sequence	10443-10483	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_MF150120	Klebsiella pneumoniae strain A64477 plasmid pKP64477d, complete sequence	40020-40060	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP053895	Proteus mirabilis strain JPM24 plasmid pJPM24, complete sequence	72704-72744	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_KX756453	Klebsiella pneumoniae strain 1194/11 plasmid pKP1194a, complete sequence	42389-42429	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_KU963389	Escherichia coli strain ECO37 plasmid ECO37P1, complete sequence	15189-15229	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP047288	Proteus cibarius strain G11 plasmid p152, complete sequence	62116-62156	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NC_015472	Escherichia coli plasmid pECTm80, complete sequence	13400-13440	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP044485	Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-2, complete sequence	28458-28498	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP025853	Escherichia coli strain 510016 plasmid p510016_36, complete sequence	25872-25912	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_KT754165	Shigella dysenteriae 1 strain 93-531-1 plasmid p93-531-1, complete sequence	23296-23336	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP013800	Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence	12026-12066	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP053372	Proteus cibarius strain G32 plasmid pG32-177, complete sequence	57371-57411	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP024247	Escherichia coli O27:H7 strain B4103-1 plasmid unnamed2	64795-64835	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP053043	Proteus cibarius strain HNCF44W plasmid pHNCF44W_NDM-1, complete sequence	95214-95254	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	MG516911	Proteus mirabilis plasmid pPm60, complete sequence	57064-57104	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	JX469830	Uncultured bacterium plasmid pG527, complete sequence	41405-41445	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP013819	Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence	10823-10863	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP003997	Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13d, complete sequence	42555-42595	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	CP025925	Escherichia coli strain 520873 plasmid p520873_36, complete sequence	13689-13729	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	CP025875	Escherichia coli strain 503458 plasmid p503458_37, complete sequence	10886-10926	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP013795	Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence	10823-10863	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	CP054380	Escherichia coli strain SCU-175 plasmid pSCU-175-1, complete sequence	38089-38129	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NC_002525	Escherichia coli K-12 plasmid R721, complete sequence	10461-10501	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP023380	Escherichia coli strain 127 plasmid p43, complete sequence	15452-15492	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP011314	Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence	172112-172152	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NC_008357	Pseudomonas aeruginosa plasmid pBS228, complete sequence	68119-68159	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP027138	Escherichia coli strain AR_0369 plasmid unnamed2	74845-74885	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP022673	Shigella sonnei strain 866 plasmid p866, complete sequence	78371-78411	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP048015	Acinetobacter towneri strain 205 plasmid pAT205, complete sequence	49151-49191	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP034054	Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 plasmid unnamed1, complete sequence	140877-140917	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP047114	Proteus mirabilis strain SCBX1.1 plasmid plas1.1.2, complete sequence	46403-46443	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP034046	Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 plasmid unnamed1, complete sequence	150899-150939	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP045128	Acinetobacter indicus strain XG03 plasmid pXG03-X3, complete sequence	89327-89367	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP027700	Klebsiella pneumoniae strain KP30835 plasmid unnamed5, complete sequence	7407-7447	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_LT985250	Escherichia coli strain 170 plasmid RCS38_p, complete sequence	152347-152387	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_MK360096	Salmonella enterica strain 13-SA02717 plasmid pSE13-SA02717, complete sequence	17906-17946	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP053899	Proteus mirabilis strain YPM35 plasmid pJPM35-1, complete sequence	116635-116675	0	1.0
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_MK264770	Klebsiella pneumoniae strain KP89 plasmid pKP89, complete sequence	42556-42596	0	1.0
CP031123_2	2.1\|1487539\|26\|CP031123\|CRISPRCasFinder	1487539-1487564	26	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	90321-90346	1	0.962
CP031123_1	1.1\|1475280\|32\|CP031123\|PILER-CR,CRISPRCasFinder,CRT	1475280-1475311	32	MW057862	Providencia phage PSTCR7lys, complete genome	3155-3186	2	0.938
CP031123_2	2.3\|1487545\|25\|CP031123\|PILER-CR	1487545-1487569	25	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	90323-90347	2	0.92
CP031123_2	2.3\|1487545\|25\|CP031123\|PILER-CR	1487545-1487569	25	NZ_CP016898	Acinetobacter soli strain GFJ2 plasmid pGFJ2, complete sequence	17798-17822	2	0.92
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052804	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence	113091-113123	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP038508	Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence	228634-228666	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052788	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence	321488-321520	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052786	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence	10079-10111	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052838	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence	13470-13502	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP051676	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence	201786-201818	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052779	Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence	212524-212556	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052832	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence	277011-277043	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	MN310378	Klebsiella pneumoniae strain A2293 plasmid pA2293-Ct2, complete sequence	73380-73412	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052806	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence	282696-282728	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052818	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence	1788-1820	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_MH476540	Klebsiella pneumoniae strain KP1276 plasmid pIA/C-KLUC, complete sequence	87104-87136	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052795	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence	166287-166319	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP047882	Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence	264306-264338	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052802	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence	197576-197608	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052840	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence	9544-9576	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052836	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence	222743-222775	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052828	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence	8856-8888	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052826	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence	292607-292639	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP016409	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence	299316-299348	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP016407	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence	299920-299952	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP016413	Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence	295999-296031	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_CP016411	Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence	293612-293644	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	CP052814	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence	281790-281822	2	0.939
CP031123_3	3.1\|3131893\|33\|CP031123\|PILER-CR	3131893-3131925	33	NZ_MG764552	Klebsiella pneumoniae strain A1763 plasmid pA1763-Ct2, complete sequence	61314-61346	2	0.939
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_CP053897	Providencia rettgeri strain YPR31 plasmid pYPR31, complete sequence	75936-75976	2	0.951
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	MN310378	Klebsiella pneumoniae strain A2293 plasmid pA2293-Ct2, complete sequence	73436-73476	2	0.951
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_MH476540	Klebsiella pneumoniae strain KP1276 plasmid pIA/C-KLUC, complete sequence	87160-87200	2	0.951
CP031123_3	3.2\|3131949\|41\|CP031123\|PILER-CR	3131949-3131989	41	NZ_MG764552	Klebsiella pneumoniae strain A1763 plasmid pA1763-Ct2, complete sequence	61250-61290	2	0.951
CP031123_1	1.2\|1475340\|32\|CP031123\|PILER-CR,CRISPRCasFinder,CRT	1475340-1475371	32	MW145137	Providencia phage PSTNGR2lys, complete genome	7849-7880	3	0.906
CP031123_1	1.2\|1475340\|32\|CP031123\|PILER-CR,CRISPRCasFinder,CRT	1475340-1475371	32	MK047640	Phage NV18, complete genome	20274-20305	3	0.906
CP031123_2	2.1\|1487539\|26\|CP031123\|CRISPRCasFinder	1487539-1487564	26	NZ_CP016898	Acinetobacter soli strain GFJ2 plasmid pGFJ2, complete sequence	17796-17821	3	0.885
CP031123_2	2.2\|1487599\|26\|CP031123\|CRISPRCasFinder	1487599-1487624	26	MW057859	Providencia phage PSTCR8lys, complete genome	8589-8614	3	0.885
CP031123_2	2.3\|1487545\|25\|CP031123\|PILER-CR	1487545-1487569	25	AP013477	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S25-C14	37985-38009	3	0.88
CP031123_2	2.4\|1487605\|25\|CP031123\|PILER-CR	1487605-1487629	25	MW057859	Providencia phage PSTCR8lys, complete genome	8591-8615	3	0.88
CP031123_2	2.4\|1487605\|25\|CP031123\|PILER-CR	1487605-1487629	25	AB775549	Pseudomonas phage PPpW-4 DNA, complete sequence	21613-21637	3	0.88
CP031123_1	1.10\|1475819\|32\|CP031123\|PILER-CR,CRISPRCasFinder,CRT	1475819-1475850	32	NZ_MK851048	Morganella morganii strain MM1L5 plasmid pMM1L5, complete sequence	31625-31656	4	0.875
CP031123_1	1.10\|1475819\|32\|CP031123\|PILER-CR,CRISPRCasFinder,CRT	1475819-1475850	32	NZ_MK851047	Actinobacillus pleuropneumoniae strain APP1L5 plasmid pAPP1L5, complete sequence	48588-48619	4	0.875
CP031123_2	2.2\|1487599\|26\|CP031123\|CRISPRCasFinder	1487599-1487624	26	AB775549	Pseudomonas phage PPpW-4 DNA, complete sequence	21611-21636	4	0.846
CP031123_2	2.3\|1487545\|25\|CP031123\|PILER-CR	1487545-1487569	25	MN856003	Bacteriophage sp. isolate 1, complete genome	43141-43165	4	0.84
CP031123_2	2.1\|1487539\|26\|CP031123\|CRISPRCasFinder	1487539-1487564	26	AP013477	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S25-C14	37986-38011	5	0.808
CP031123_1	1.8\|1475699\|32\|CP031123\|PILER-CR,CRISPRCasFinder,CRT	1475699-1475730	32	NZ_CP031118	Providencia sp. WCHPHu000369 strain WCHPr000369 plasmid p1_000369, complete sequence	16736-16767	6	0.812
CP031123_1	1.5\|1475521\|32\|CP031123\|PILER-CR,CRISPRCasFinder,CRT	1475521-1475552	32	NZ_CP021916	Sagittula sp. P11 plasmid unnamed3, complete sequence	95264-95295	8	0.75
CP031123_1	1.7\|1475641\|30\|CP031123\|PILER-CR,CRISPRCasFinder,CRT	1475641-1475670	30	NZ_CP026566	Pseudomonas avellanae strain R2leaf plasmid p4_tig8, complete sequence	34032-34061	8	0.733
CP031123_1	1.11\|1475879\|32\|CP031123\|PILER-CR,CRISPRCasFinder,CRT	1475879-1475910	32	NZ_KP342511	Enterococcus faecium isolate N12-493 plasmid pEfm12493, complete sequence	68023-68054	9	0.719
CP031123_1	1.4\|1475461\|32\|CP031123\|PILER-CR,CRISPRCasFinder,CRT	1475461-1475492	32	NC_048687	Pseudomonas phage PMBT14, complete genome	40846-40877	10	0.688
CP031123_1	1.5\|1475521\|32\|CP031123\|PILER-CR,CRISPRCasFinder,CRT	1475521-1475552	32	NC_015170	Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence	17874-17905	10	0.688

1. spacer 1.2|1475340|32|CP031123|PILER-CR,CRISPRCasFinder,CRT matches to MW057862 (Providencia phage PSTCR7lys, complete genome) position: , mismatch: 0, identity: 1.0

ctaccgcatggcagatgcaatgttaaaggcta	CRISPR spacer
ctaccgcatggcagatgcaatgttaaaggcta	Protospacer
********************************

2. spacer 1.2|1475340|32|CP031123|PILER-CR,CRISPRCasFinder,CRT matches to KY420199 (Proteus phage vB_PvuS_Pm34, complete genome) position: , mismatch: 0, identity: 1.0

ctaccgcatggcagatgcaatgttaaaggcta	CRISPR spacer
ctaccgcatggcagatgcaatgttaaaggcta	Protospacer
********************************

3. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_KX774387 (Providencia rettgeri strain 30905 plasmid pC131, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

4. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP053895 (Proteus mirabilis strain JPM24 plasmid pJPM24, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

5. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_KU963389 (Escherichia coli strain ECO37 plasmid ECO37P1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

6. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP047288 (Proteus cibarius strain G11 plasmid p152, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

7. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP044485 (Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-2, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

8. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP025853 (Escherichia coli strain 510016 plasmid p510016_36, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

9. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_KT754165 (Shigella dysenteriae 1 strain 93-531-1 plasmid p93-531-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

10. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP053372 (Proteus cibarius strain G32 plasmid pG32-177, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

11. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP024247 (Escherichia coli O27:H7 strain B4103-1 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

12. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP053043 (Proteus cibarius strain HNCF44W plasmid pHNCF44W_NDM-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

13. spacer 3.1|3131893|33|CP031123|PILER-CR matches to JX469830 (Uncultured bacterium plasmid pG527, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

14. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP013819 (Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

15. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP025925 (Escherichia coli strain 520873 plasmid p520873_36, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

16. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP025875 (Escherichia coli strain 503458 plasmid p503458_37, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

17. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP013795 (Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

18. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP023380 (Escherichia coli strain 127 plasmid p43, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

19. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP011314 (Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

20. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NC_008357 (Pseudomonas aeruginosa plasmid pBS228, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

21. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP027138 (Escherichia coli strain AR_0369 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

22. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP022673 (Shigella sonnei strain 866 plasmid p866, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

23. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP045128 (Acinetobacter indicus strain XG03 plasmid pXG03-X3, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

24. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_LT985250 (Escherichia coli strain 170 plasmid RCS38_p, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

25. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_MK360096 (Salmonella enterica strain 13-SA02717 plasmid pSE13-SA02717, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

26. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP053897 (Providencia rettgeri strain YPR31 plasmid pYPR31, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

27. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_MF150120 (Klebsiella pneumoniae strain A64477 plasmid pKP64477d, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

28. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_KX756453 (Klebsiella pneumoniae strain 1194/11 plasmid pKP1194a, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

29. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NC_015472 (Escherichia coli plasmid pECTm80, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

30. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP013800 (Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

31. spacer 3.1|3131893|33|CP031123|PILER-CR matches to MG516911 (Proteus mirabilis plasmid pPm60, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

32. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP003997 (Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13d, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

33. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP054380 (Escherichia coli strain SCU-175 plasmid pSCU-175-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

34. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NC_002525 (Escherichia coli K-12 plasmid R721, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

35. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP048015 (Acinetobacter towneri strain 205 plasmid pAT205, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

36. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP034054 (Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

37. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP047114 (Proteus mirabilis strain SCBX1.1 plasmid plas1.1.2, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

38. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP034046 (Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

39. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP027700 (Klebsiella pneumoniae strain KP30835 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

40. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP053899 (Proteus mirabilis strain YPM35 plasmid pJPM35-1, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

41. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_MK264770 (Klebsiella pneumoniae strain KP89 plasmid pKP89, complete sequence) position: , mismatch: 0, identity: 1.0

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgtattagcttacgacgctaca	Protospacer
*********************************

42. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_KX774387 (Providencia rettgeri strain 30905 plasmid pC131, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

43. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_MF150120 (Klebsiella pneumoniae strain A64477 plasmid pKP64477d, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

44. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP053895 (Proteus mirabilis strain JPM24 plasmid pJPM24, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

45. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_KX756453 (Klebsiella pneumoniae strain 1194/11 plasmid pKP1194a, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

46. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_KU963389 (Escherichia coli strain ECO37 plasmid ECO37P1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

47. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP047288 (Proteus cibarius strain G11 plasmid p152, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

48. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NC_015472 (Escherichia coli plasmid pECTm80, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

49. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP044485 (Acinetobacter schindleri strain HZE30-1 plasmid pHZE30-1-2, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

50. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP025853 (Escherichia coli strain 510016 plasmid p510016_36, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

51. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_KT754165 (Shigella dysenteriae 1 strain 93-531-1 plasmid p93-531-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

52. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP013800 (Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

53. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP053372 (Proteus cibarius strain G32 plasmid pG32-177, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

54. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP024247 (Escherichia coli O27:H7 strain B4103-1 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

55. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP053043 (Proteus cibarius strain HNCF44W plasmid pHNCF44W_NDM-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

56. spacer 3.2|3131949|41|CP031123|PILER-CR matches to MG516911 (Proteus mirabilis plasmid pPm60, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

57. spacer 3.2|3131949|41|CP031123|PILER-CR matches to JX469830 (Uncultured bacterium plasmid pG527, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

58. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP013819 (Piscirickettsia salmonis strain AY3800B plasmid p3PS10, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

59. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP003997 (Klebsiella pneumoniae subsp. pneumoniae Kp13 plasmid pKP13d, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

60. spacer 3.2|3131949|41|CP031123|PILER-CR matches to CP025925 (Escherichia coli strain 520873 plasmid p520873_36, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

61. spacer 3.2|3131949|41|CP031123|PILER-CR matches to CP025875 (Escherichia coli strain 503458 plasmid p503458_37, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

62. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP013795 (Piscirickettsia salmonis strain AY6297B plasmid p4PS8, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

63. spacer 3.2|3131949|41|CP031123|PILER-CR matches to CP054380 (Escherichia coli strain SCU-175 plasmid pSCU-175-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

64. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NC_002525 (Escherichia coli K-12 plasmid R721, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

65. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP023380 (Escherichia coli strain 127 plasmid p43, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

66. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP011314 (Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

67. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NC_008357 (Pseudomonas aeruginosa plasmid pBS228, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

68. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP027138 (Escherichia coli strain AR_0369 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

69. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP022673 (Shigella sonnei strain 866 plasmid p866, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

70. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP048015 (Acinetobacter towneri strain 205 plasmid pAT205, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

71. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP034054 (Klebsiella pneumoniae strain KP_NORM_BLD_2015_112126 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

72. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP047114 (Proteus mirabilis strain SCBX1.1 plasmid plas1.1.2, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

73. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP034046 (Klebsiella pneumoniae strain KP_NORM_BLD_2014_104014 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

74. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP045128 (Acinetobacter indicus strain XG03 plasmid pXG03-X3, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

75. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP027700 (Klebsiella pneumoniae strain KP30835 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

76. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_LT985250 (Escherichia coli strain 170 plasmid RCS38_p, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

77. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_MK360096 (Salmonella enterica strain 13-SA02717 plasmid pSE13-SA02717, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

78. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP053899 (Proteus mirabilis strain YPM35 plasmid pJPM35-1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

79. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_MK264770 (Klebsiella pneumoniae strain KP89 plasmid pKP89, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccacccct	Protospacer
*****************************************

80. spacer 2.1|1487539|26|CP031123|CRISPRCasFinder matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.962

aagcatccaaaggcattgtctttact	CRISPR spacer
aagcacccaaaggcattgtctttact	Protospacer
*****.********************

81. spacer 1.1|1475280|32|CP031123|PILER-CR,CRISPRCasFinder,CRT matches to MW057862 (Providencia phage PSTCR7lys, complete genome) position: , mismatch: 2, identity: 0.938

aaccacggctacgcaaaccgattatgagtgat	CRISPR spacer
aaccacggctacgcaagccaattatgagtgat	Protospacer
****************.**.************

82. spacer 2.3|1487545|25|CP031123|PILER-CR matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.92

aaagcatccaaaggcattgtcttta	CRISPR spacer
gaagcacccaaaggcattgtcttta	Protospacer
.*****.******************

83. spacer 2.3|1487545|25|CP031123|PILER-CR matches to NZ_CP016898 (Acinetobacter soli strain GFJ2 plasmid pGFJ2, complete sequence) position: , mismatch: 2, identity: 0.92

aaagcatccaaaggcattgtcttta	CRISPR spacer
aaagcatccaaatgcattgtctttt	Protospacer
************ ***********

84. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052804 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

85. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP038508 (Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

86. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052788 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

87. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052786 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

88. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052838 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

89. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP051676 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

90. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052779 (Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

91. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052832 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

92. spacer 3.1|3131893|33|CP031123|PILER-CR matches to MN310378 (Klebsiella pneumoniae strain A2293 plasmid pA2293-Ct2, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

93. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052806 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

94. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052818 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

95. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_MH476540 (Klebsiella pneumoniae strain KP1276 plasmid pIA/C-KLUC, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

96. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052795 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

97. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP047882 (Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

98. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052802 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

99. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052840 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

100. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052836 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

101. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052828 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

102. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052826 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

103. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP016409 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

104. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP016407 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

105. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP016413 (Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

106. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_CP016411 (Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

107. spacer 3.1|3131893|33|CP031123|PILER-CR matches to CP052814 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

108. spacer 3.1|3131893|33|CP031123|PILER-CR matches to NZ_MG764552 (Klebsiella pneumoniae strain A1763 plasmid pA1763-Ct2, complete sequence) position: , mismatch: 2, identity: 0.939

tttttaattttcgtattagcttacgacgctaca	CRISPR spacer
tttttaattttcgcattagcttgcgacgctaca	Protospacer
*************.********.**********

109. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_CP053897 (Providencia rettgeri strain YPR31 plasmid pYPR31, complete sequence) position: , mismatch: 2, identity: 0.951

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctcttccctaaataatccttaaaaactccatttccaccctc	Protospacer
***************************************..

110. spacer 3.2|3131949|41|CP031123|PILER-CR matches to MN310378 (Klebsiella pneumoniae strain A2293 plasmid pA2293-Ct2, complete sequence) position: , mismatch: 2, identity: 0.951

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctctcccctaaataatccttaaaaaccccatttccacccct	Protospacer
****.*********************.**************

111. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_MH476540 (Klebsiella pneumoniae strain KP1276 plasmid pIA/C-KLUC, complete sequence) position: , mismatch: 2, identity: 0.951

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctctcccctaaataatccttaaaaaccccatttccacccct	Protospacer
****.*********************.**************

112. spacer 3.2|3131949|41|CP031123|PILER-CR matches to NZ_MG764552 (Klebsiella pneumoniae strain A1763 plasmid pA1763-Ct2, complete sequence) position: , mismatch: 2, identity: 0.951

ctcttccctaaataatccttaaaaactccatttccacccct	CRISPR spacer
ctctcccctaaataatccttaaaaaccccatttccacccct	Protospacer
****.*********************.**************

113. spacer 1.2|1475340|32|CP031123|PILER-CR,CRISPRCasFinder,CRT matches to MW145137 (Providencia phage PSTNGR2lys, complete genome) position: , mismatch: 3, identity: 0.906

ctaccgcatggcagatgcaatgttaaaggcta	CRISPR spacer
ttaccaaatggcagatgcaatgttaaaggcta	Protospacer
.****. *************************

114. spacer 1.2|1475340|32|CP031123|PILER-CR,CRISPRCasFinder,CRT matches to MK047640 (Phage NV18, complete genome) position: , mismatch: 3, identity: 0.906

ctaccgcatggcagatgcaatgttaaaggcta	CRISPR spacer
ctatgtcatggcagatgcaatgttaaaggcta	Protospacer
***.  **************************

115. spacer 2.1|1487539|26|CP031123|CRISPRCasFinder matches to NZ_CP016898 (Acinetobacter soli strain GFJ2 plasmid pGFJ2, complete sequence) position: , mismatch: 3, identity: 0.885

aagcatccaaaggcattgtctttact	CRISPR spacer
aagcatccaaatgcattgtcttttgt	Protospacer
*********** ***********  *

116. spacer 2.2|1487599|26|CP031123|CRISPRCasFinder matches to MW057859 (Providencia phage PSTCR8lys, complete genome) position: , mismatch: 3, identity: 0.885

tgctctggtagttgcccgactcgtca	CRISPR spacer
ttgtctggtagttgcccgactcgtcg	Protospacer
*  **********************.

117. spacer 2.3|1487545|25|CP031123|PILER-CR matches to AP013477 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S25-C14) position: , mismatch: 3, identity: 0.88

aaagcatccaaaggcattgtcttta	CRISPR spacer
aaagcatccaaatgcgttgtctttt	Protospacer
************ **.********

118. spacer 2.4|1487605|25|CP031123|PILER-CR matches to MW057859 (Providencia phage PSTCR8lys, complete genome) position: , mismatch: 3, identity: 0.88

ttgctctggtagttgcccgactcgt	CRISPR spacer
cttgtctggtagttgcccgactcgt	Protospacer
.*  *********************

119. spacer 2.4|1487605|25|CP031123|PILER-CR matches to AB775549 (Pseudomonas phage PPpW-4 DNA, complete sequence) position: , mismatch: 3, identity: 0.88

ttgctctggtagttgcccgactcgt	CRISPR spacer
tagctcaggtagtcgcccgactcgt	Protospacer
* **** ******.***********

120. spacer 1.10|1475819|32|CP031123|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK851048 (Morganella morganii strain MM1L5 plasmid pMM1L5, complete sequence) position: , mismatch: 4, identity: 0.875

--attgatacgaatttgtggttgccacgccgaaa	CRISPR spacer
gcatta--acgaatttgtggttgtcacgccgaaa	Protospacer
  ***.  ***************.**********

121. spacer 1.10|1475819|32|CP031123|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK851047 (Actinobacillus pleuropneumoniae strain APP1L5 plasmid pAPP1L5, complete sequence) position: , mismatch: 4, identity: 0.875

--attgatacgaatttgtggttgccacgccgaaa	CRISPR spacer
gcatta--acgaatttgtggttgtcacgccgaaa	Protospacer
  ***.  ***************.**********

122. spacer 2.2|1487599|26|CP031123|CRISPRCasFinder matches to AB775549 (Pseudomonas phage PPpW-4 DNA, complete sequence) position: , mismatch: 4, identity: 0.846

tgctctggtagttgcccgactcgtca	CRISPR spacer
agctcaggtagtcgcccgactcgtcg	Protospacer
 **** ******.************.

123. spacer 2.3|1487545|25|CP031123|PILER-CR matches to MN856003 (Bacteriophage sp. isolate 1, complete genome) position: , mismatch: 4, identity: 0.84

aaagcatccaaaggcattgtcttta	CRISPR spacer
gaagcacccgaaggcattgtctttg	Protospacer
.*****.**.**************.

124. spacer 2.1|1487539|26|CP031123|CRISPRCasFinder matches to AP013477 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S25-C14) position: , mismatch: 5, identity: 0.808

aagcatccaaaggcattgtctttact	CRISPR spacer
aagcatccaaatgcgttgtcttttga	Protospacer
*********** **.********

125. spacer 1.8|1475699|32|CP031123|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031118 (Providencia sp. WCHPHu000369 strain WCHPr000369 plasmid p1_000369, complete sequence) position: , mismatch: 6, identity: 0.812

ttttgaagatgaccagtgtgatatttcagggt	CRISPR spacer
ttttgaagatgatcagtgtgttatttttatgt	Protospacer
************.******* *****. . **

126. spacer 1.5|1475521|32|CP031123|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021916 (Sagittula sp. P11 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gcctgcgcctgttcaagcgctgtaaccgcttg	CRISPR spacer
gcctgcgcctcttcaagcgcggtctcggcgat	Protospacer
********** ********* **  * **

127. spacer 1.7|1475641|30|CP031123|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026566 (Pseudomonas avellanae strain R2leaf plasmid p4_tig8, complete sequence) position: , mismatch: 8, identity: 0.733

ttgcaaactggaattttctgtcttgatata	CRISPR spacer
ttgcaaactggaattttttttctgtgcttc	Protospacer
*****************.* ***  .. *

128. spacer 1.11|1475879|32|CP031123|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP342511 (Enterococcus faecium isolate N12-493 plasmid pEfm12493, complete sequence) position: , mismatch: 9, identity: 0.719

atacagattttaaaatgaaaccagattagcaa	CRISPR spacer
gcttaggttttaaaatgaaaccaggtttagaa	Protospacer
.. .**.*****************.** . **

129. spacer 1.4|1475461|32|CP031123|PILER-CR,CRISPRCasFinder,CRT matches to NC_048687 (Pseudomonas phage PMBT14, complete genome) position: , mismatch: 10, identity: 0.688

caaccaatttatgcaatgcaaccatcttacat	CRISPR spacer
tgtgcactttctgcaatgcaaccatcttttcc	Protospacer
..  ** *** ***************** . .

130. spacer 1.5|1475521|32|CP031123|PILER-CR,CRISPRCasFinder,CRT matches to NC_015170 (Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence) position: , mismatch: 10, identity: 0.688

gcctgcgcctgttcaagcgctgtaaccgcttg	CRISPR spacer
gcctgcgcctggtcaagcgcagtgtgaatcag	Protospacer
*********** ******** **.   ... *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

461635 : 508696

Enterobacteria_phage(31.58%)

transposase,terminase,tail,portal,holin,protease,integrase,tRNA

attL 454943:454957|attR 473035:473049

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
454943:454957	attL	NA	NA	NA	NA
AXH64673.1\|461635_462739_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AXH61141.1\|462878_463328_-	NUDIX hydrolase	NA	NA	NA	NA
AXH61142.1\|463320_463971_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AXH61143.1\|464504_465758_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	8.0e-21	92.6
AXH61144.1\|465919_466864_-	hypothetical protein	NA	NA	NA	NA
AXH61145.1\|466923_468051_-\|integrase	integrase	Q77Z04	Phage_21	2.0e-124	57.6
AXH61146.1\|468034_468277_-	excisionase	NA	NA	NA	NA
AXH61147.1\|468346_468922_-	hypothetical protein	NA	NA	NA	NA
AXH61148.1\|469026_469854_-	DUF2303 family protein	A0A192Y6E5	Salmonella_phage	1.1e-82	54.7
AXH61149.1\|469914_470286_-	hypothetical protein	Q8HAA1	Salmonella_phage	8.3e-43	69.2
AXH64674.1\|470478_470667_-	carbon storage regulator	A0A2I7RT00	Vibrio_phage	5.9e-13	62.7
AXH61150.1\|470699_470921_-	hypothetical protein	NA	NA	NA	NA
AXH61151.1\|471199_471886_-	helix-turn-helix transcriptional regulator	A0A0N7C1P9	Escherichia_phage	1.3e-41	41.1
AXH61152.1\|472009_472246_+	cytoplasmic chaperone TorD	NA	NA	NA	NA
AXH61153.1\|472322_472781_+	hypothetical protein	A0A1W6JP72	Morganella_phage	1.8e-47	64.0
AXH61154.1\|472777_473068_+	hypothetical protein	NA	NA	NA	NA
473035:473049	attR	NA	NA	NA	NA
AXH61155.1\|473060_473243_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AXH61156.1\|473239_474301_+	replication protein	A0A248SL49	Klebsiella_phage	1.0e-29	44.9
AXH61157.1\|474300_474546_+	hypothetical protein	NA	NA	NA	NA
AXH61158.1\|474545_475079_+	phage N-6-adenine-methyltransferase	Q4A1M4	Enterobacteria_phage	2.5e-64	65.3
AXH61159.1\|475075_475423_+	hypothetical protein	NA	NA	NA	NA
AXH61160.1\|475419_475716_+	hypothetical protein	V9SHM3	Achromobacter_phage	1.8e-24	54.9
AXH61161.1\|475708_476089_+	hypothetical protein	A0A1W6JP80	Morganella_phage	8.2e-38	61.4
AXH61162.1\|476085_476271_+	restriction alleviation protein, Lar family	NA	NA	NA	NA
AXH61163.1\|476310_477105_+	KilA-N domain-containing protein	A0A1W6JP13	Morganella_phage	1.8e-90	64.3
AXH61164.1\|477101_477644_+	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	3.7e-39	58.6
AXH61165.1\|477666_478332_+	hypothetical protein	NA	NA	NA	NA
AXH61166.1\|478515_478716_+	TrmB family transcriptional regulator	Q8SBE3	Shigella_phage	1.8e-07	58.8
AXH61167.1\|478849_479908_+	site-specific DNA-methyltransferase	A0A1W6JP25	Morganella_phage	5.3e-143	71.0
AXH61168.1\|480032_480257_+\|holin	holin	H9C183	Pectobacterium_phage	3.3e-18	68.7
AXH61169.1\|480237_480807_+	lysozyme	A0A1W6JNW4	Morganella_phage	3.0e-52	62.7
AXH61170.1\|480865_481357_+	hypothetical protein	K7PHH7	Enterobacteria_phage	1.6e-25	44.9
AXH61171.1\|481397_481931_+	hypothetical protein	NA	NA	NA	NA
AXH61172.1\|482201_482399_+	hypothetical protein	NA	NA	NA	NA
AXH61173.1\|482457_482796_+	hypothetical protein	NA	NA	NA	NA
AXH61174.1\|482792_483056_+	hypothetical protein	NA	NA	NA	NA
AXH61175.1\|483112_483325_+	hypothetical protein	NA	NA	NA	NA
AXH61176.1\|483441_483945_+	DUF1441 family protein	A5LH26	Enterobacteria_phage	2.8e-41	55.6
AXH61177.1\|483941_486059_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	8.9e-283	66.0
AXH61178.1\|486055_486271_+	hypothetical protein	K7PMB5	Enterobacterial_phage	4.2e-15	57.1
AXH61179.1\|486267_487773_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	6.7e-192	66.4
AXH61180.1\|487717_489790_+\|protease	Clp protease ClpP	Q8VNN5	Enterobacteria_phage	8.9e-235	60.3
AXH61181.1\|489872_490220_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	4.9e-13	39.8
AXH61182.1\|490223_490520_+	ATP-binding protein	K7PH43	Enterobacteria_phage	8.1e-17	46.0
AXH61183.1\|490503_491061_+\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	1.1e-33	43.4
AXH61184.1\|491060_491459_+\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	6.0e-31	48.9
AXH61185.1\|491470_491983_+\|tail	phage tail protein	O64327	Escherichia_phage	1.8e-56	63.1
AXH61186.1\|492187_492700_+	DNA-binding protein	A0A0P0ZBU2	Stx2-converting_phage	9.7e-26	39.5
AXH61187.1\|492743_493127_+	hypothetical protein	A5LH36	Enterobacteria_phage	2.1e-09	32.3
AXH64675.1\|493150_493465_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.2e-15	48.0
AXH61188.1\|493439_496436_+\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	1.4e-119	35.7
AXH61189.1\|496463_496808_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	6.8e-15	41.6
AXH61190.1\|496956_497256_+	hypothetical protein	NA	NA	NA	NA
AXH61191.1\|497309_498008_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.6e-69	54.3
AXH61192.1\|498016_498745_+\|tail	phage tail protein	A0A0P0ZDJ9	Stx2-converting_phage	5.9e-85	60.3
AXH61193.1\|498648_499305_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	4.9e-54	50.5
AXH61194.1\|499307_503006_+	DUF1983 domain-containing protein	A0A0K2FI38	Escherichia_phage	2.0e-266	54.1
AXH61195.1\|503002_504091_+	hypothetical protein	NA	NA	NA	NA
AXH61196.1\|505796_505910_+	hypothetical protein	NA	NA	NA	NA
AXH61197.1\|506075_506414_+	hypothetical protein	NA	NA	NA	NA
AXH61198.1\|506881_507640_-	hypothetical protein	NA	NA	NA	NA
AXH61199.1\|508237_508696_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	1.5e-14	33.1

DBSCAN-SWA_2

571374 : 618609

Mannheimia_phage(19.35%)

transposase,plate,tail,head,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH61255.1\|571374_573396_+\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
AXH61256.1\|573909_574302_+	DUF454 family protein	NA	NA	NA	NA
AXH61257.1\|574356_575025_-	D-alanyl-D-alanine carboxypeptidase family protein	NA	NA	NA	NA
AXH61258.1\|575021_576152_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AXH64679.1\|576165_576507_-	ArsC family reductase	NA	NA	NA	NA
AXH61259.1\|576682_577303_-	response regulator	NA	NA	NA	NA
AXH61260.1\|577842_580122_+	NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase	NA	NA	NA	NA
AXH64680.1\|580280_581108_+	iron-regulated protein	NA	NA	NA	NA
AXH61261.1\|581253_582057_+	energy transducer TonB	NA	NA	NA	NA
AXH61262.1\|582069_584202_+	S9 family peptidase	NA	NA	NA	NA
AXH61263.1\|586308_586926_-\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	6.4e-32	39.8
AXH64681.1\|586925_587624_-	hypothetical protein	A0A219YBC2	Aeromonas_phage	2.3e-30	46.8
AXH61264.1\|588387_588951_-	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	8.8e-36	40.9
AXH61265.1\|588947_590009_-\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	4.4e-81	46.2
AXH61266.1\|590008_590359_-	hypothetical protein	F6MIL5	Haemophilus_phage	6.0e-27	56.4
AXH61267.1\|590428_591082_-\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	2.1e-49	46.2
AXH61268.1\|591092_592343_-\|tail	phage tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	2.7e-69	36.9
AXH61269.1\|592326_593751_-	multidrug DMT transporter permease	A0A0M3LQ21	Mannheimia_phage	2.5e-34	27.0
AXH61270.1\|593747_596036_-\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	9.6e-65	34.0
AXH61271.1\|596214_596571_-	hypothetical protein	NA	NA	NA	NA
AXH61272.1\|596570_596948_-\|tail	phage tail protein	A0A0M3LRV6	Mannheimia_phage	3.3e-31	56.2
AXH61273.1\|596956_598378_-\|tail	phage tail protein	B7SDP8	Haemophilus_phage	5.9e-105	46.5
AXH61274.1\|598374_598560_-	DUF2635 domain-containing protein	NA	NA	NA	NA
AXH61275.1\|598556_599213_-	DUF1834 family protein	A0A0M3LQJ7	Mannheimia_phage	1.3e-22	35.1
AXH61276.1\|599206_599635_-	DUF1320 domain-containing protein	B7SDP4	Haemophilus_phage	3.1e-17	36.0
AXH61277.1\|599646_599994_-	hypothetical protein	NA	NA	NA	NA
AXH61278.1\|599993_600902_-\|head	head protein	A0A2H4J778	uncultured_Caudovirales_phage	2.3e-110	66.6
AXH61279.1\|600915_601308_-	hypothetical protein	A0A0U5KRP3	unidentified_phage	2.1e-20	46.9
AXH64682.1\|601311_602412_-	hypothetical protein	A0A2D1GNS3	Pseudomonas_phage	2.6e-68	44.5
AXH61280.1\|602628_603168_-	phage virion morphogenesis protein	J9SNH3	Pseudomonas_phage	2.0e-21	36.6
AXH61281.1\|603175_604333_-\|head	phage head morphogenesis protein	Q6QIB9	Burkholderia_phage	9.2e-64	46.8
AXH61282.1\|604319_605900_-	DUF935 domain-containing protein	A0A0M5MS00	Ralstonia_phage	7.5e-125	45.1
AXH61283.1\|605909_607541_-	hypothetical protein	B7SDN0	Haemophilus_phage	1.6e-191	62.8
AXH61284.1\|607546_607759_-	hypothetical protein	NA	NA	NA	NA
AXH61285.1\|607751_608252_-	DUF1804 family protein	I6PBD1	Pseudomonas_phage	4.1e-45	54.2
AXH61286.1\|608254_608503_-	hypothetical protein	NA	NA	NA	NA
AXH61287.1\|608723_609281_-	hypothetical protein	S4TTP1	Salmonella_phage	2.0e-16	39.6
AXH61288.1\|609277_609841_-	lysozyme	A0A1I9LJR4	Stx_converting_phage	1.5e-59	61.9
AXH64683.1\|609842_610091_-	potassium channel protein	A0A2H4FNF0	Salmonella_phage	8.1e-10	45.0
AXH61289.1\|610336_610795_-	mor transcription activator family protein	NA	NA	NA	NA
AXH61290.1\|610885_611227_-	hypothetical protein	NA	NA	NA	NA
AXH61291.1\|611239_611692_-	hypothetical protein	NA	NA	NA	NA
AXH61292.1\|611651_612080_-	regulatory protein GemA	A0A2D1GNN4	Pseudomonas_phage	3.8e-39	60.0
AXH61293.1\|612079_612463_-	hypothetical protein	H9C172	Pectobacterium_phage	1.1e-08	34.2
AXH61294.1\|612459_612891_-	hypothetical protein	M4MHH2	Vibrio_phage	8.5e-23	43.1
AXH61295.1\|612877_613192_-	hypothetical protein	NA	NA	NA	NA
AXH61296.1\|613184_613415_-	hypothetical protein	NA	NA	NA	NA
AXH61297.1\|613401_613659_-	hypothetical protein	NA	NA	NA	NA
AXH61298.1\|613920_614118_-	ANR family transcriptional regulator	NA	NA	NA	NA
AXH61299.1\|614119_614758_-	DUF3164 family protein	Q6QIE4	Burkholderia_phage	1.0e-72	66.7
AXH61300.1\|614747_614939_-	hypothetical protein	NA	NA	NA	NA
AXH61301.1\|614947_615223_-	hypothetical protein	NA	NA	NA	NA
AXH61302.1\|615231_615417_-	hypothetical protein	NA	NA	NA	NA
AXH61303.1\|615425_616319_-	AAA family ATPase	A0A2D1GNS0	Pseudomonas_phage	1.8e-91	55.8
AXH61304.1\|616331_618374_-\|transposase	transposase	A0A2D1GNK9	Pseudomonas_phage	1.5e-178	48.4
AXH61305.1\|618354_618609_-	transcriptional regulator	M1PVU4	Vibrio_phage	6.3e-18	58.3

DBSCAN-SWA_3

908690 : 960867

Pseudomonas_phage(21.05%)

transposase,plate,tail,integrase,head

attL 900053:900067|attR 964685:964699

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
900053:900067	attL	NA	NA	NA	NA
AXH61560.1\|908690_909308_-	XRE family transcriptional regulator	L7P7S1	Pseudomonas_phage	3.2e-07	37.2
AXH61561.1\|909471_909750_+	transcriptional regulator	M1PVU4	Vibrio_phage	5.7e-12	49.2
AXH61562.1\|909761_911810_+\|transposase	transposase	A0A2D1GNK9	Pseudomonas_phage	2.4e-176	47.7
AXH61563.1\|911822_912716_+	AAA family ATPase	A0A2D1GNS0	Pseudomonas_phage	8.9e-91	55.8
AXH61564.1\|912906_913182_+	hypothetical protein	NA	NA	NA	NA
AXH61565.1\|913190_913382_+	hypothetical protein	NA	NA	NA	NA
AXH61566.1\|913371_914010_+	DUF3164 family protein	Q6QIE4	Burkholderia_phage	1.3e-72	66.7
AXH61567.1\|914011_914209_+	ANR family transcriptional regulator	NA	NA	NA	NA
AXH61568.1\|914180_914375_+	hypothetical protein	A0A2D1GNV5	Pseudomonas_phage	9.7e-11	52.6
AXH61569.1\|914467_914920_+	hypothetical protein	NA	NA	NA	NA
AXH61570.1\|914912_915227_+	hypothetical protein	NA	NA	NA	NA
AXH61571.1\|915213_915645_+	hypothetical protein	M4MHH2	Vibrio_phage	5.5e-22	42.3
AXH61572.1\|915641_916025_+	hypothetical protein	H9C172	Pectobacterium_phage	2.1e-09	35.0
AXH61573.1\|916024_916453_+	regulatory protein GemA	A0A2D1GNN4	Pseudomonas_phage	1.9e-38	58.6
AXH61574.1\|916412_916865_+	hypothetical protein	NA	NA	NA	NA
AXH61575.1\|916872_917319_+	hypothetical protein	NA	NA	NA	NA
AXH61576.1\|917409_917868_+	mor transcription activator family protein	NA	NA	NA	NA
AXH64702.1\|918113_918362_+	potassium channel protein	A0A2H4FNF0	Salmonella_phage	8.1e-10	45.0
AXH61577.1\|918363_918927_+	lysozyme	A0A1I9LJR4	Stx_converting_phage	1.5e-59	61.9
AXH61578.1\|918923_919481_+	hypothetical protein	S4TTP1	Salmonella_phage	3.1e-17	40.2
AXH61579.1\|919477_919705_+	hypothetical protein	NA	NA	NA	NA
AXH61580.1\|919701_919950_+	hypothetical protein	NA	NA	NA	NA
AXH61581.1\|919952_920453_+	DUF1804 family protein	I6PBD1	Pseudomonas_phage	4.1e-45	54.2
AXH61582.1\|920754_921255_-	hypothetical protein	K7P861	Enterobacteria_phage	3.4e-07	27.7
AXH61583.1\|921308_922940_+	hypothetical protein	B7SDN0	Haemophilus_phage	9.2e-195	63.6
AXH61584.1\|922949_924530_+	DUF935 domain-containing protein	A0A0M5MS00	Ralstonia_phage	8.8e-126	45.5
AXH61585.1\|924516_925674_+\|head	phage head morphogenesis protein	Q6QIB9	Burkholderia_phage	2.0e-63	46.2
AXH61586.1\|925681_926221_+	phage virion morphogenesis protein	J9SNH3	Pseudomonas_phage	5.3e-22	37.2
AXH61587.1\|926437_927538_+	hypothetical protein	A0A2D1GNS3	Pseudomonas_phage	9.9e-68	43.9
AXH61588.1\|927541_927934_+	hypothetical protein	A0A0U5KRP3	unidentified_phage	1.6e-20	47.7
AXH61589.1\|927947_928856_+\|head	head protein	A0A2H4J778	uncultured_Caudovirales_phage	2.3e-110	66.6
AXH61590.1\|928855_929203_+	hypothetical protein	NA	NA	NA	NA
AXH61591.1\|929214_929643_+	DUF1320 domain-containing protein	B7SDP4	Haemophilus_phage	1.4e-17	37.4
AXH64703.1\|929687_930293_+	DUF1834 family protein	NA	NA	NA	NA
AXH61592.1\|930289_930475_+	DUF2635 domain-containing protein	NA	NA	NA	NA
AXH61593.1\|930471_931893_+\|tail	phage tail protein	B7SDP8	Haemophilus_phage	5.0e-104	46.3
AXH61594.1\|931901_932279_+\|tail	phage tail protein	A0A0M3LRV6	Mannheimia_phage	3.3e-31	55.4
AXH61595.1\|932278_932635_+	hypothetical protein	NA	NA	NA	NA
AXH61596.1\|932813_935087_+\|tail	tail length tape measure protein	A0A0M3LPB6	Mannheimia_phage	1.6e-64	31.4
AXH61597.1\|935083_936508_+	multidrug DMT transporter permease	A0A0M3LQ21	Mannheimia_phage	1.1e-34	27.2
AXH61598.1\|936491_937742_+\|tail	phage tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	2.7e-69	36.9
AXH61599.1\|937752_938406_+\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	2.1e-49	46.2
AXH61600.1\|938475_938826_+	hypothetical protein	F6MIL5	Haemophilus_phage	6.0e-27	56.4
AXH61601.1\|938825_939887_+\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	4.4e-81	46.2
AXH61602.1\|939883_940447_+	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	8.8e-36	40.9
AXH64704.1\|941210_941909_+	hypothetical protein	A0A219YBC2	Aeromonas_phage	2.3e-30	46.8
AXH61603.1\|941908_942526_+\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	6.4e-32	39.8
AXH61604.1\|943111_943459_-	HNH nuclease family protein	NA	NA	NA	NA
AXH61605.1\|943631_944663_-	methionine synthase	NA	NA	NA	NA
AXH61606.1\|944692_945670_-	DUF1852 domain-containing protein	NA	NA	NA	NA
AXH61607.1\|946111_946717_-	thiamine biosynthesis protein ThiJ	NA	NA	NA	NA
AXH61608.1\|946802_947348_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AXH61609.1\|947679_949140_-	hypothetical protein	E5E3R2	Burkholderia_phage	1.4e-08	23.2
AXH61610.1\|949450_950734_+	hypothetical protein	NA	NA	NA	NA
AXH61611.1\|950738_950987_-	hypothetical protein	NA	NA	NA	NA
AXH61612.1\|951032_952181_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.5e-130	65.3
AXH61613.1\|953483_954599_-	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTT7	Clostridium_phage	9.5e-34	26.1
AXH61614.1\|954609_955212_-	hypothetical protein	NA	NA	NA	NA
AXH61615.1\|955469_956600_+	hypothetical protein	NA	NA	NA	NA
AXH64705.1\|959600_960104_+\|integrase	integrase	Q83VS6	Escherichia_phage	5.9e-60	65.9
AXH61616.1\|960408_960867_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	1.5e-14	33.1
964685:964699	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1022714 : 1135379

115

Enterobacteria_phage(22.22%)

transposase,terminase,tail,portal,holin,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH61660.1\|1022714_1023173_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	1.5e-14	33.1
AXH61661.1\|1023374_1024073_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
AXH61662.1\|1024167_1026093_-	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	4.1e-85	31.6
AXH61663.1\|1026244_1026592_+	RidA family protein	NA	NA	NA	NA
AXH61664.1\|1026874_1027207_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
AXH61665.1\|1027208_1027637_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
AXH61666.1\|1028271_1029120_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA
AXH61667.1\|1029223_1030699_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	3.3e-82	36.8
AXH61668.1\|1031171_1032017_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AXH61669.1\|1032216_1033659_+	pyruvate kinase	NA	NA	NA	NA
AXH61670.1\|1033712_1034141_-	hypothetical protein	NA	NA	NA	NA
AXH61671.1\|1034298_1035315_-	type 1 fimbrial protein	NA	NA	NA	NA
AXH61672.1\|1035323_1037810_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
AXH61673.1\|1037821_1038484_-	molecular chaperone	NA	NA	NA	NA
AXH61674.1\|1038541_1039090_-	type 1 fimbrial protein	NA	NA	NA	NA
AXH61675.1\|1039251_1040109_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXH61676.1\|1041360_1042335_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
AXH61677.1\|1042453_1043794_-	murein DD-endopeptidase MepM	Q8SBN9	Clostridium_phage	8.2e-16	39.1
AXH61678.1\|1043814_1044774_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
AXH61679.1\|1044850_1045618_+	zinc ABC transporter ATP-binding protein ZnuC	G3M9Y6	Bacillus_virus	2.1e-16	32.2
AXH61680.1\|1045610_1046396_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
AXH61681.1\|1046501_1047512_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.1e-07	27.7
AXH61682.1\|1047528_1048146_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AXH61683.1\|1048308_1048830_-	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	3.4e-10	30.2
AXH61684.1\|1049013_1049757_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AXH61685.1\|1049787_1050219_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
AXH61686.1\|1050224_1051994_-\|tRNA	aspartate--tRNA ligase	A0A2K9L0E9	Tupanvirus	7.8e-22	24.2
AXH61687.1\|1052504_1052828_+	DUF4377 domain-containing protein	NA	NA	NA	NA
AXH61688.1\|1052936_1053341_+	NUDIX domain-containing protein	NA	NA	NA	NA
AXH61689.1\|1053490_1053889_+	hypothetical protein	NA	NA	NA	NA
AXH61690.1\|1054020_1054770_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	NA	NA	NA
AXH61691.1\|1054772_1055744_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
AXH61692.1\|1055805_1056582_-	diguanylate cyclase	A0A077SK59	Escherichia_phage	3.3e-41	42.4
AXH61693.1\|1056583_1057201_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	1.0e-85	64.4
AXH61694.1\|1059926_1060688_-	copper homeostasis protein CutC	NA	NA	NA	NA
AXH61695.1\|1060869_1061424_-	VOC family protein	NA	NA	NA	NA
AXH61696.1\|1061592_1063323_+\|tRNA	arginine--tRNA ligase	A0A1V0SIS8	Klosneuvirus	8.8e-87	34.6
AXH61697.1\|1063344_1063917_-	DNA-binding protein	J9Q7G7	Salmonella_phage	2.0e-51	55.8
AXH61698.1\|1064512_1066051_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
AXH61699.1\|1066134_1066722_-	30S ribosomal protein S5 alanine N-acetyltransferase	NA	NA	NA	NA
AXH61700.1\|1067115_1068321_+	multidrug transporter MdtH	NA	NA	NA	NA
AXH61701.1\|1068359_1068920_+	lipoprotein	NA	NA	NA	NA
AXH61702.1\|1069491_1070112_+	hypothetical protein	NA	NA	NA	NA
AXH61703.1\|1070111_1070522_+	hypothetical protein	NA	NA	NA	NA
AXH61704.1\|1070732_1071233_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
AXH61705.1\|1071290_1072856_-	hypothetical protein	A0A1S6KUV1	Providencia_phage	6.2e-47	37.0
AXH61706.1\|1073084_1074173_-	hypothetical protein	NA	NA	NA	NA
AXH61707.1\|1074169_1077868_-	DUF1983 domain-containing protein	A0A0K2FI38	Escherichia_phage	2.0e-266	54.1
AXH61708.1\|1077870_1078527_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	3.2e-53	50.0
AXH61709.1\|1078430_1079159_-\|tail	phage tail protein	A0A0P0ZDJ9	Stx2-converting_phage	5.7e-88	61.6
AXH61710.1\|1079167_1079866_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	6.7e-70	54.7
AXH61711.1\|1079920_1080160_-	hypothetical protein	NA	NA	NA	NA
AXH61712.1\|1080257_1081127_-	hypothetical protein	NA	NA	NA	NA
AXH61713.1\|1081203_1081551_-\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	1.1e-15	41.3
AXH61714.1\|1081577_1084547_-\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	8.2e-117	35.4
AXH64711.1\|1084521_1084836_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.2e-15	48.0
AXH61715.1\|1084859_1085243_-	hypothetical protein	A5LH36	Enterobacteria_phage	2.1e-09	32.3
AXH64712.1\|1085337_1085739_-	hypothetical protein	Q9B021	Phage_GMSE-1	9.3e-16	76.8
AXH61716.1\|1086102_1086615_-\|tail	phage tail protein	O64327	Escherichia_phage	1.0e-54	61.2
AXH61717.1\|1086626_1087025_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	6.0e-31	48.9
AXH61718.1\|1087024_1087582_-\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	1.1e-33	43.4
AXH61719.1\|1087565_1087862_-	ATP-binding protein	Q8VNN4	Enterobacteria_phage	5.5e-13	42.7
AXH61720.1\|1087865_1088213_-	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	3.8e-13	39.8
AXH61721.1\|1088298_1090338_-\|protease	Clp protease ClpP	Q8VNN5	Enterobacteria_phage	1.1e-242	62.2
AXH61722.1\|1090306_1091812_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	3.2e-194	67.0
AXH61723.1\|1091808_1092024_-	hypothetical protein	K7PMB5	Enterobacterial_phage	3.2e-15	58.6
AXH61724.1\|1092020_1094138_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	1.5e-285	70.2
AXH61725.1\|1094134_1094638_-	DUF1441 family protein	A5LH26	Enterobacteria_phage	2.8e-41	55.6
AXH61726.1\|1095811_1095994_+	hypothetical protein	NA	NA	NA	NA
AXH61727.1\|1096046_1096541_-	hypothetical protein	K7P6W1	Enterobacteria_phage	2.8e-30	47.9
AXH61728.1\|1096599_1097166_-	lysozyme	A0A1W6JNW4	Morganella_phage	3.3e-51	62.7
AXH61729.1\|1097146_1097371_-\|holin	holin	H9C183	Pectobacterium_phage	3.3e-18	68.7
AXH61730.1\|1097589_1098009_+	hypothetical protein	NA	NA	NA	NA
AXH61731.1\|1098108_1099026_+	hypothetical protein	A0A1B5FPB0	Escherichia_phage	3.3e-32	54.0
AXH61732.1\|1099134_1099686_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	9.8e-32	43.8
AXH61733.1\|1099717_1100257_-	DUF968 domain-containing protein	A0A1W6JP62	Morganella_phage	1.1e-46	52.9
AXH61734.1\|1100253_1100640_-	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	2.8e-25	52.5
AXH61735.1\|1100624_1101008_-	hypothetical protein	NA	NA	NA	NA
AXH61736.1\|1101000_1101183_-	hypothetical protein	NA	NA	NA	NA
AXH61737.1\|1101179_1101632_-	hypothetical protein	NA	NA	NA	NA
AXH64713.1\|1101633_1102290_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	5.2e-80	64.8
AXH64714.1\|1102337_1102583_-	hypothetical protein	NA	NA	NA	NA
AXH61738.1\|1102582_1103632_-	helix-turn-helix domain-containing protein	S5FM81	Shigella_phage	7.3e-60	63.6
AXH61739.1\|1103640_1103844_-	DUF4222 domain-containing protein	NA	NA	NA	NA
AXH61740.1\|1103809_1104073_-	hypothetical protein	NA	NA	NA	NA
AXH61741.1\|1104069_1104528_-	hypothetical protein	A0A1W6JP72	Morganella_phage	4.7e-48	64.0
AXH61742.1\|1104565_1104760_-	hypothetical protein	K7PHB1	Enterobacterial_phage	3.8e-15	64.9
AXH61743.1\|1104832_1105504_+	helix-turn-helix domain-containing protein	K7PLZ5	Enterobacterial_phage	3.8e-62	56.2
AXH61744.1\|1105659_1105869_+	hypothetical protein	NA	NA	NA	NA
AXH61745.1\|1106117_1106369_-	bssS family protein	NA	NA	NA	NA
AXH61746.1\|1106470_1106662_+	carbon storage regulator	A0A2I7RT00	Vibrio_phage	7.6e-08	51.0
AXH61747.1\|1106812_1107715_+	hypothetical protein	A0A1W6JP69	Morganella_phage	1.4e-80	52.5
AXH61748.1\|1107798_1108575_+	hypothetical protein	A0A248SL66	Klebsiella_phage	8.9e-39	39.5
AXH61749.1\|1108587_1109271_+	hypothetical protein	H2BDG4	Pseudomonas_virus	1.7e-46	48.1
AXH61750.1\|1109919_1110132_+	excisionase	I6PBM8	Cronobacter_phage	1.1e-18	63.9
AXH61751.1\|1110095_1110824_+	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	4.3e-75	60.3
AXH61752.1\|1113526_1114468_-	glyoxylate/hydroxypyruvate reductase GhrA	A0A1B1IVB5	uncultured_Mediterranean_phage	3.4e-08	27.1
AXH61753.1\|1114901_1116422_-	alanine:cation symporter family protein	NA	NA	NA	NA
AXH61754.1\|1116509_1117994_-	aldehyde dehydrogenase	NA	NA	NA	NA
AXH61755.1\|1118002_1118869_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
AXH61756.1\|1118886_1120134_-	FAD-binding oxidoreductase	NA	NA	NA	NA
AXH61757.1\|1120143_1121094_-	4-hydroxyproline epimerase	NA	NA	NA	NA
AXH61758.1\|1121247_1122051_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AXH61759.1\|1122294_1122918_+	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
AXH61760.1\|1122927_1124694_+	alpha/beta fold hydrolase	NA	NA	NA	NA
AXH61761.1\|1124960_1126319_+	hypothetical protein	NA	NA	NA	NA
AXH61762.1\|1126299_1126701_+	hypothetical protein	NA	NA	NA	NA
AXH61763.1\|1126983_1128717_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	5.3e-31	25.8
AXH61764.1\|1128766_1129501_-	sel1 repeat family protein	NA	NA	NA	NA
AXH61765.1\|1129521_1130424_-	TIGR01212 family radical SAM protein	NA	NA	NA	NA
AXH61766.1\|1130436_1131291_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	3.4e-47	41.4
AXH64715.1\|1131337_1132147_-	tetratricopeptide repeat-containing protein	NA	NA	NA	NA
AXH61767.1\|1132169_1133003_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
AXH61768.1\|1133002_1134085_-	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	3.3e-07	40.0
AXH61769.1\|1134116_1135379_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA

DBSCAN-SWA_5

1221619 : 1334918

111

Salmonella_phage(27.78%)

transposase,capsid,plate,tail,holin,portal,protease,integrase,tRNA,head

attL 1276677:1276696|attR 1309003:1309022

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH61840.1\|1221619_1222894_-\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	3.1e-81	41.4
AXH61841.1\|1223055_1223709_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
AXH64723.1\|1223729_1224848_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
AXH61842.1\|1225383_1225851_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
AXH61843.1\|1226308_1226743_-	transcriptional regulator SlyA	NA	NA	NA	NA
AXH61844.1\|1227275_1227515_-	DUF1289 domain-containing protein	NA	NA	NA	NA
AXH61845.1\|1227682_1228090_+	lactoylglutathione lyase	NA	NA	NA	NA
AXH61846.1\|1228217_1228862_+	ribonuclease T	NA	NA	NA	NA
AXH61847.1\|1228964_1229312_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
AXH61848.1\|1229800_1230379_+	superoxide dismutase [Fe]	NA	NA	NA	NA
AXH61849.1\|1230821_1231847_+	HTH-type transcriptional repressor PurR	C6ZCU4	Enterobacteria_phage	4.5e-30	31.5
AXH61850.1\|1231856_1232762_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXH61851.1\|1232884_1234111_+	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	5.1e-12	23.2
AXH61852.1\|1235202_1235475_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AXH61853.1\|1235689_1236355_-	riboflavin synthase subunit alpha	A0A2I2L4R9	Orpheovirus	2.4e-24	33.5
AXH61854.1\|1236631_1238005_+	MATE family efflux transporter	NA	NA	NA	NA
AXH61855.1\|1238873_1240286_+	pyruvate kinase PykF	NA	NA	NA	NA
AXH61856.1\|1240697_1240934_+	major outer membrane lipoprotein	NA	NA	NA	NA
AXH61857.1\|1241030_1242095_-	L,D-transpeptidase	NA	NA	NA	NA
AXH61858.1\|1242353_1242770_-	cysteine desulfuration protein SufE	NA	NA	NA	NA
AXH61859.1\|1242803_1244042_-	cysteine desulfurase SufS	Q2XUY6	environmental_halophage	5.3e-86	39.5
AXH61860.1\|1244047_1245355_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
AXH61861.1\|1245329_1246076_-	Fe-S cluster assembly ATPase SufC	A0A285PWH2	Cedratvirus	1.6e-08	30.9
AXH61862.1\|1246121_1247621_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
AXH61863.1\|1247637_1248006_-	Fe-S cluster assembly scaffold SufA	A0A218MM00	uncultured_virus	2.5e-15	37.5
AXH61864.1\|1248415_1248832_-	1,4-dihydroxy-2-naphthoyl-CoA hydrolase	NA	NA	NA	NA
AXH61865.1\|1248831_1251885_-	FAD-binding oxidoreductase	NA	NA	NA	NA
AXH61866.1\|1253051_1253749_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	2.6e-61	46.8
AXH61867.1\|1253881_1256260_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	1.0e-173	37.2
AXH61868.1\|1256522_1257386_+	kinase/pyrophosphorylase	NA	NA	NA	NA
AXH61869.1\|1257509_1258559_+	3-deoxy-7-phosphoheptulonate synthase	S4W5F1	Pandoravirus	1.4e-82	47.1
AXH61870.1\|1258931_1261088_+	TonB-dependent receptor	NA	NA	NA	NA
AXH61871.1\|1261210_1262260_+	hemin-degrading factor	NA	NA	NA	NA
AXH61872.1\|1263142_1263514_+	helix-turn-helix domain-containing protein	D0R0F8	Streptococcus_phage	1.0e-08	36.4
AXH61873.1\|1263750_1264767_-	lipoate--protein ligase	NA	NA	NA	NA
AXH61874.1\|1264830_1265319_-	endopeptidase	NA	NA	NA	NA
AXH61875.1\|1265401_1265809_-	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF	NA	NA	NA	NA
AXH61876.1\|1265805_1266153_-	4-amino-4-deoxy-L-arabinose-phospho-UDP flippase	NA	NA	NA	NA
AXH61877.1\|1266149_1267808_-	lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase	NA	NA	NA	NA
AXH61878.1\|1267815_1268709_-	4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase	NA	NA	NA	NA
AXH61879.1\|1268708_1270694_-	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	A0A2K9KZK0	Tupanvirus	5.7e-21	26.9
AXH61880.1\|1270693_1271686_-	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	A8CG95	Salmonella_phage	3.3e-38	33.4
AXH61881.1\|1271685_1272831_-	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	A0A2K9L470	Tupanvirus	1.7e-33	26.8
AXH61882.1\|1272950_1273727_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
AXH64724.1\|1273729_1274731_-	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	1.3e-13	24.3
AXH61883.1\|1274798_1275956_+	hypothetical protein	NA	NA	NA	NA
AXH61884.1\|1276068_1276527_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	1.5e-14	33.1
1276677:1276696	attL	NA	NA	NA	NA
AXH61885.1\|1276861_1277497_+	hypothetical protein	NA	NA	NA	NA
AXH61886.1\|1277529_1277748_-	transcriptional regulator	Q53ZE7	Salmonella_virus	2.8e-22	70.3
AXH61887.1\|1277819_1278917_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.7e-115	60.6
AXH61888.1\|1278913_1279360_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.1e-41	63.4
AXH61889.1\|1279362_1282062_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	4.8e-124	38.3
AXH61890.1\|1282054_1282174_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	7.2e-09	66.7
AXH61891.1\|1282188_1282497_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	2.9e-17	56.5
AXH61892.1\|1282506_1283022_-\|tail	phage major tail tube protein	Q37845	Escherichia_phage	1.5e-50	58.7
AXH61893.1\|1283024_1284197_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	1.5e-167	72.7
AXH61894.1\|1284320_1284941_-\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	5.7e-36	41.7
AXH61895.1\|1284940_1286632_-	hypothetical protein	M1TAS6	Escherichia_phage	1.0e-71	35.5
AXH61896.1\|1286628_1287240_-\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.3e-72	64.8
AXH61897.1\|1287232_1288144_-\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	6.2e-108	67.4
AXH61898.1\|1288146_1288488_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	8.7e-31	61.3
AXH61899.1\|1288484_1289108_-\|plate	phage baseplate assembly protein V	O80314	Escherichia_phage	1.9e-52	55.9
AXH61900.1\|1289111_1289495_-	hypothetical protein	NA	NA	NA	NA
AXH61901.1\|1289583_1290201_-	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	4.2e-31	38.8
AXH61902.1\|1290197_1290626_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	2.4e-25	44.1
AXH64725.1\|1290609_1291161_-	DUF2570 domain-containing protein	NA	NA	NA	NA
AXH61903.1\|1291203_1291647_-	structural protein	A0A0D4DAE2	Escherichia_phage	7.6e-27	44.2
AXH61904.1\|1291639_1291945_-\|holin	holin	E7C9S8	Salmonella_phage	7.8e-23	55.2
AXH61905.1\|1291948_1292152_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	2.3e-15	58.2
AXH61906.1\|1292148_1292625_-\|head	head protein	E5E3S2	Burkholderia_phage	5.0e-24	45.1
AXH61907.1\|1292713_1293346_-	hypothetical protein	A0A077K804	Ralstonia_phage	1.7e-35	41.9
AXH61908.1\|1293373_1294468_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.2e-120	61.2
AXH61909.1\|1294480_1295308_-\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	1.4e-53	47.4
AXH61910.1\|1295466_1297224_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	9.1e-273	75.7
AXH61911.1\|1297223_1298261_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	6.8e-143	70.7
AXH61912.1\|1298364_1299315_-	hypothetical protein	NA	NA	NA	NA
AXH64726.1\|1300073_1301630_+	DNA repair protein	NA	NA	NA	NA
AXH61913.1\|1301700_1304115_-	replication endonuclease	M1SV59	Escherichia_phage	8.9e-162	47.0
AXH61914.1\|1304107_1304431_-	hypothetical protein	NA	NA	NA	NA
AXH61915.1\|1304430_1305255_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	F1BUN1	Cronobacter_phage	4.0e-61	47.3
AXH61916.1\|1305247_1305550_-	DUF3850 domain-containing protein	A0A2P0W9X8	Enterobacter_phage	1.3e-06	39.4
AXH61917.1\|1305546_1305768_-	TraR/DksA family transcriptional regulator	F1BUS2	Erwinia_phage	1.1e-10	47.9
AXH61918.1\|1305760_1306072_-	DUF2732 family protein	NA	NA	NA	NA
AXH61919.1\|1306089_1306521_-	hypothetical protein	NA	NA	NA	NA
AXH61920.1\|1306526_1306688_-	TetR family transcriptional regulator	NA	NA	NA	NA
AXH61921.1\|1306659_1306878_-	hypothetical protein	NA	NA	NA	NA
AXH61922.1\|1306886_1307237_-	hypothetical protein	NA	NA	NA	NA
AXH61923.1\|1307331_1307622_+	XRE family transcriptional regulator	Q1JS63	Enterobacteria_phage	3.1e-13	48.8
AXH61924.1\|1307618_1307831_+	hypothetical protein	NA	NA	NA	NA
AXH61925.1\|1307924_1308938_+\|integrase	integrase	A0A0M4RTQ0	Salmonella_phage	1.3e-93	49.4
AXH61926.1\|1309041_1309338_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	3.2e-13	40.0
1309003:1309022	attR	NA	NA	NA	NA
AXH61927.1\|1309342_1311730_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
AXH61928.1\|1311744_1312728_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	6.4e-34	37.6
AXH61929.1\|1313069_1313426_-	50S ribosomal protein L20	NA	NA	NA	NA
AXH61930.1\|1313471_1313669_-	50S ribosomal protein L35	NA	NA	NA	NA
AXH61931.1\|1313764_1314304_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.8e-14	35.2
AXH61932.1\|1314725_1315265_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	5.3e-14	34.5
AXH61933.1\|1315268_1317197_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.0e-127	36.9
AXH61934.1\|1317557_1318007_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
AXH61935.1\|1318110_1318509_-	hypothetical protein	NA	NA	NA	NA
AXH61936.1\|1318611_1319025_-	fosfomycin resistance glutathione transferase	NA	NA	NA	NA
AXH61937.1\|1319492_1320197_+	MarC family NAAT transporter	NA	NA	NA	NA
AXH61938.1\|1320190_1320844_-	lytic transglycosylase	NA	NA	NA	NA
AXH61939.1\|1321127_1322039_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH61940.1\|1322040_1322931_+	manganese/iron ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-09	28.6
AXH61941.1\|1322927_1323818_+	metal ABC transporter permease	NA	NA	NA	NA
AXH61942.1\|1323810_1324677_+	metal ABC transporter permease	NA	NA	NA	NA
AXH61943.1\|1324780_1326133_-	hypothetical protein	NA	NA	NA	NA
AXH61944.1\|1326129_1332429_-	DUF4011 domain-containing protein	NA	NA	NA	NA
AXH64727.1\|1332445_1333075_-	4Fe-4S cluster-binding domain-containing protein	NA	NA	NA	NA
AXH61945.1\|1333079_1334918_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2L0V0F4	Agrobacterium_phage	7.8e-41	34.2

DBSCAN-SWA_6

1915035 : 1925633

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH62435.1\|1915035_1916247_+	serine-type D-Ala-D-Ala carboxypeptidase	B6DZZ7	Stx2-converting_phage	5.9e-106	49.3
AXH62436.1\|1916397_1916661_+	DUF493 family protein	NA	NA	NA	NA
AXH62437.1\|1916889_1917519_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
AXH62438.1\|1917641_1918607_+	lipoyl synthase	NA	NA	NA	NA
AXH62439.1\|1918740_1918950_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.5e-22	78.1
AXH62440.1\|1919166_1919625_-	methylated-DNA--[protein]-cysteine S-methyltransferase	A0A2K9L300	Tupanvirus	4.2e-20	46.7
AXH62441.1\|1919913_1920141_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	3.6e-17	56.2
AXH62442.1\|1920149_1920563_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	2.3e-09	34.7
AXH62443.1\|1920574_1922707_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	5.6e-208	51.7
AXH62444.1\|1922720_1923692_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	5.4e-134	72.5
AXH62445.1\|1924433_1925633_+	proline/glycine betaine ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	2.6e-29	38.5

DBSCAN-SWA_7

2544991 : 2553497

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH64772.1\|2544991_2546182_+	slipin family protein	A0A2P1EMF1	Moumouvirus	4.7e-15	28.3
AXH62948.1\|2546185_2547412_+	RtcB family protein	A0A1V0EEW8	Caulobacter_phage	4.3e-136	62.3
AXH62949.1\|2547436_2548231_+	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	4.7e-43	43.0
AXH62950.1\|2548318_2548741_-	DoxX family protein	NA	NA	NA	NA
AXH62951.1\|2548947_2549514_-	DmsD	A0A077SLS7	Escherichia_phage	2.3e-15	31.8
AXH62952.1\|2549551_2550448_-	reductase	NA	NA	NA	NA
AXH62953.1\|2550444_2551083_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-63	55.3
AXH62954.1\|2551079_2553497_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	8.1e-139	36.6

DBSCAN-SWA_8

3057412 : 3130639

uncultured_Caudovirales_phage(27.78%)

transposase,tRNA,integrase,holin

attL 3075161:3075175|attR 3132693:3132707

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH63359.1\|3057412_3060439_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
AXH63360.1\|3060600_3061245_+	resolvase	NA	NA	NA	NA
AXH63361.1\|3061428_3063423_+\|holin	high-affinity choline transporter BetT	A0A2I7QNT1	Vibrio_phage	1.8e-22	25.5
AXH63362.1\|3063494_3064352_-	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	5.4e-45	37.7
AXH63363.1\|3064354_3065833_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	4.3e-199	74.6
AXH63364.1\|3066116_3066542_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	2.7e-45	64.3
AXH63365.1\|3066552_3067842_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.6e-173	73.0
AXH63366.1\|3067897_3069649_-	arsenical pump-driving ATPase	NA	NA	NA	NA
AXH63367.1\|3069662_3070028_-	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
AXH63368.1\|3070075_3070411_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	3.1e-20	58.5
AXH63369.1\|3071549_3073235_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.7e-18	27.1
AXH63370.1\|3073227_3074862_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	2.9e-15	31.0
AXH63371.1\|3074953_3075631_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
3075161:3075175	attL	NA	NA	NA	NA
AXH64796.1\|3075768_3076395_-	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	5.5e-63	57.5
AXH63372.1\|3076812_3078768_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	7.9e-84	38.5
AXH63373.1\|3078897_3079209_+	DUF485 domain-containing protein	NA	NA	NA	NA
AXH63374.1\|3079205_3080855_+	cation/acetate symporter ActP	NA	NA	NA	NA
AXH63375.1\|3081122_3081596_-	hypothetical protein	NA	NA	NA	NA
AXH63376.1\|3082633_3083787_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	7.8e-47	38.6
AXH63377.1\|3090594_3091293_+	FadR family transcriptional regulator	NA	NA	NA	NA
AXH63378.1\|3091341_3092745_+	MFS transporter	NA	NA	NA	NA
AXH64797.1\|3092741_3093734_-	transcriptional regulator RbsR	NA	NA	NA	NA
AXH63379.1\|3093746_3094676_-	ribokinase	NA	NA	NA	NA
AXH63380.1\|3094754_3095645_-	ribose ABC transporter substrate-binding protein RbsB	NA	NA	NA	NA
AXH63381.1\|3095663_3096626_-	ribose ABC transporter permease	NA	NA	NA	NA
AXH63382.1\|3096622_3098137_-	ribose ABC transporter ATP-binding protein RbsA	A0A2H4PQG7	Staphylococcus_phage	3.2e-16	27.2
AXH63383.1\|3098144_3098564_-	D-ribose pyranase	NA	NA	NA	NA
AXH63384.1\|3098845_3100363_+	ATPase RavA	A0A0N9PBE1	Sulfolobus_monocaudavirus	3.1e-19	31.3
AXH63385.1\|3100365_3101823_+	ATPase RavA stimulator ViaA	NA	NA	NA	NA
AXH63386.1\|3101823_3102816_-	aspartate--ammonia ligase	NA	NA	NA	NA
AXH63387.1\|3102977_3103439_+	transcriptional regulator AsnC	NA	NA	NA	NA
AXH63388.1\|3103530_3103971_+	FMN-binding protein MioC	NA	NA	NA	NA
AXH63389.1\|3104348_3106238_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
AXH63390.1\|3106239_3106860_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
AXH63391.1\|3107458_3107836_+	F0F1 ATP synthase subunit I	NA	NA	NA	NA
AXH63392.1\|3107869_3108688_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
AXH63393.1\|3108736_3108976_+	ATP synthase subunit C	NA	NA	NA	NA
AXH63394.1\|3109034_3109505_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
AXH63395.1\|3109517_3110051_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
AXH63396.1\|3110065_3111607_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
AXH63397.1\|3111659_3112523_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
AXH63398.1\|3112557_3113940_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
AXH63399.1\|3113961_3114387_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
AXH63400.1\|3114513_3115884_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0N7G7I9	Chrysochromulina_ericina_virus	2.1e-35	36.3
AXH63401.1\|3116090_3117923_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	7.8e-134	44.2
AXH63402.1\|3118083_3118905_+\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
AXH63403.1\|3118891_3121000_+\|transposase	transposase	NA	NA	NA	NA
AXH63404.1\|3120996_3122664_+	AAA family ATPase	NA	NA	NA	NA
AXH63405.1\|3122666_3124193_+	transcriptional antiterminator	NA	NA	NA	NA
AXH63406.1\|3124193_3125810_+	transcriptional antiterminator	NA	NA	NA	NA
AXH63407.1\|3126040_3126418_-	hypothetical protein	NA	NA	NA	NA
AXH63408.1\|3126471_3126795_-	hypothetical protein	NA	NA	NA	NA
AXH63409.1\|3126827_3127199_-	hypothetical protein	NA	NA	NA	NA
AXH63410.1\|3127259_3127757_-	hypothetical protein	NA	NA	NA	NA
AXH63411.1\|3127832_3128621_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
AXH63412.1\|3128678_3129203_-	streptothricin N-acetyltransferase Sat2	E4ZFP7	Streptococcus_phage	4.2e-16	38.9
AXH63413.1\|3129297_3129771_-	trimethoprim-resistant dihydrofolate reductase DfrA1	A0A140HLG8	Bacillus_phage	1.6e-19	34.4
AXH63414.1\|3130102_3130639_+\|integrase	class 2 integron integrase IntI2	A0A1P8DJJ6	Virus_Rctr41k	6.9e-14	34.4
3132693:3132707	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3242756 : 3336464

107

Salmonella_phage(35.42%)

transposase,capsid,plate,tail,portal,holin,protease,integrase,tRNA,head

attL 3253352:3253411|attR 3330336:3331122

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH63503.1\|3242756_3243454_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	2.6e-61	46.8
AXH63504.1\|3243860_3244298_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
AXH63505.1\|3244669_3245146_+	protein-export chaperone SecB	NA	NA	NA	NA
AXH63506.1\|3245145_3246174_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
AXH63507.1\|3246197_3247019_+	serine O-acetyltransferase	NA	NA	NA	NA
AXH64802.1\|3247170_3247416_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AXH63508.1\|3247412_3247775_+	MazF family transcriptional regulator	Q708N9	Streptococcus_phage	1.1e-10	48.4
AXH63509.1\|3247804_3248308_-\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
AXH63510.1\|3248467_3249493_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	7.1e-84	48.6
AXH63511.1\|3249510_3251589_-	tyrosine protein kinase	NA	NA	NA	NA
AXH63512.1\|3251624_3252053_-	protein tyrosine phosphatase	NA	NA	NA	NA
AXH63513.1\|3252058_3253204_-	polysaccharide export protein	NA	NA	NA	NA
3253352:3253411	attL	NA	NA	NA	NA
AXH63514.1\|3253411_3254108_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	2.6e-61	46.8
AXH63515.1\|3254049_3254997_-	NAD-dependent epimerase/dehydratase family protein	A0A223FN07	Murmansk_poxvirus	4.9e-07	23.4
AXH64803.1\|3255000_3255708_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	9.4e-11	34.2
AXH63516.1\|3255813_3256851_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
AXH63517.1\|3256873_3257806_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	5.7e-16	39.5
AXH63518.1\|3257807_3258776_-	hypothetical protein	NA	NA	NA	NA
AXH63519.1\|3259081_3260029_-	hypothetical protein	NA	NA	NA	NA
AXH63520.1\|3260039_3261314_-	polysaccharide biosynthesis protein	NA	NA	NA	NA
AXH63521.1\|3261452_3262124_-	PIG-L family deacetylase	NA	NA	NA	NA
AXH63522.1\|3262116_3263169_-	pseudaminic acid synthase	NA	NA	NA	NA
AXH63523.1\|3263170_3263866_-\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
AXH63524.1\|3263938_3265018_-	UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase	NA	NA	NA	NA
AXH63525.1\|3265008_3265707_-	pseudaminic acid cytidylyltransferase	A0A1B1IVD3	uncultured_Mediterranean_phage	3.3e-08	32.9
AXH63526.1\|3265710_3266871_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	A0A2K9L470	Tupanvirus	1.3e-33	30.1
AXH63527.1\|3266879_3267893_-	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	A0A1V0SAI8	Catovirus	2.4e-44	36.6
AXH63528.1\|3267936_3268500_-	hypothetical protein	NA	NA	NA	NA
AXH63529.1\|3268544_3269270_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AXH63530.1\|3269262_3270600_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA
AXH63531.1\|3270605_3270860_-	acyl carrier protein	NA	NA	NA	NA
AXH63532.1\|3271495_3272935_-	capsule assembly Wzi family protein	NA	NA	NA	NA
AXH63533.1\|3273417_3274788_-	two-component system sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	1.6e-19	25.7
AXH63534.1\|3274784_3275483_-	DNA-binding transcriptional regulator CpxR	Q6XM27	Feldmannia_irregularis_virus	4.0e-06	29.5
AXH63535.1\|3275633_3276218_+	hypothetical protein	NA	NA	NA	NA
AXH63536.1\|3276488_3277460_-\|integrase	site-specific integrase	A0A0M4RTQ0	Salmonella_phage	6.2e-122	66.3
AXH63537.1\|3277526_3277826_-	XRE family transcriptional regulator	A0A0M5M1I9	Salmonella_phage	5.5e-21	55.6
AXH63538.1\|3277948_3278239_+	hypothetical protein	A0A0M4RCW1	Salmonella_phage	7.9e-33	65.6
AXH63539.1\|3278240_3278459_+	hypothetical protein	NA	NA	NA	NA
AXH63540.1\|3278463_3278625_+	TetR family transcriptional regulator	NA	NA	NA	NA
AXH63541.1\|3278640_3278952_+	hypothetical protein	NA	NA	NA	NA
AXH63542.1\|3278968_3279388_+	hypothetical protein	NA	NA	NA	NA
AXH63543.1\|3279406_3279760_+	DUF2732 family protein	NA	NA	NA	NA
AXH63544.1\|3279752_3279974_+	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	1.7e-11	51.4
AXH63545.1\|3279970_3280273_+	DUF3850 domain-containing protein	A0A2P0W9X8	Enterobacter_phage	1.3e-06	39.4
AXH63546.1\|3280265_3281123_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	E5G6L8	Salmonella_phage	2.0e-60	49.5
AXH63547.1\|3281122_3281446_+	hypothetical protein	NA	NA	NA	NA
AXH63548.1\|3281438_3283835_+	replication endonuclease	M1SV59	Escherichia_phage	3.0e-162	47.1
AXH63549.1\|3283831_3284068_+	hypothetical protein	NA	NA	NA	NA
AXH63550.1\|3284054_3284318_+	hypothetical protein	NA	NA	NA	NA
AXH63551.1\|3284329_3285022_+	hypothetical protein	E5E3S6	Burkholderia_phage	1.2e-15	36.9
AXH63552.1\|3285023_3285257_+	hypothetical protein	NA	NA	NA	NA
AXH63553.1\|3285293_3285770_+	hypothetical protein	NA	NA	NA	NA
AXH63554.1\|3285951_3286188_+	hypothetical protein	NA	NA	NA	NA
AXH63555.1\|3286288_3287326_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.5e-142	71.0
AXH63556.1\|3287325_3289083_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	3.1e-273	75.9
AXH63557.1\|3289241_3290069_+\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	3.0e-53	47.0
AXH63558.1\|3290081_3291176_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-119	61.4
AXH63559.1\|3291203_3291836_+	hypothetical protein	A0A077K804	Ralstonia_phage	8.3e-35	40.9
AXH63560.1\|3291924_3292401_+\|head	head protein	E5E3S2	Burkholderia_phage	2.6e-25	45.7
AXH63561.1\|3292397_3292601_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.0e-15	56.7
AXH63562.1\|3292604_3292910_+\|holin	holin	E7C9S8	Salmonella_phage	2.1e-23	56.3
AXH63563.1\|3292902_3293346_+	structural protein	A0A193GYI3	Enterobacter_phage	2.0e-27	47.1
AXH64804.1\|3293388_3293940_+	DUF2570 domain-containing protein	NA	NA	NA	NA
AXH63564.1\|3293923_3294352_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.4e-25	45.3
AXH63565.1\|3294348_3294966_+	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	5.4e-31	39.3
AXH63566.1\|3295054_3295438_+	hypothetical protein	NA	NA	NA	NA
AXH63567.1\|3295441_3296065_+\|plate	phage baseplate assembly protein V	O80314	Escherichia_phage	6.7e-53	55.0
AXH63568.1\|3296061_3296403_+\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	1.6e-29	58.6
AXH63569.1\|3296405_3297317_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	2.6e-106	66.4
AXH63570.1\|3297309_3297921_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	5.7e-73	64.8
AXH64805.1\|3298286_3299624_+	hypothetical protein	K7P7Q7	Enterobacteria_phage	2.5e-36	54.2
AXH63571.1\|3299623_3300244_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.5e-28	39.6
AXH63572.1\|3300367_3301540_+\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	1.0e-166	72.7
AXH63573.1\|3301542_3302058_+\|tail	phage major tail tube protein	Q37845	Escherichia_phage	1.5e-50	58.7
AXH63574.1\|3302067_3302376_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	2.9e-17	56.5
AXH64806.1\|3302390_3302510_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	7.2e-09	66.7
AXH63575.1\|3302502_3305202_+\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	4.2e-128	39.0
AXH63576.1\|3305204_3305651_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.9e-41	62.6
AXH63577.1\|3305647_3306745_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.5e-119	58.9
AXH63578.1\|3306816_3307035_+	transcriptional regulator	Q53ZE7	Salmonella_virus	3.6e-22	71.9
AXH63579.1\|3307067_3307799_-	hypothetical protein	NA	NA	NA	NA
AXH63580.1\|3308158_3308440_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
AXH63581.1\|3308420_3308705_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
AXH63582.1\|3308866_3309448_+	HutD family protein	NA	NA	NA	NA
AXH63583.1\|3309448_3309634_-	hypothetical protein	NA	NA	NA	NA
AXH63584.1\|3309674_3310427_+\|protease	metalloprotease	NA	NA	NA	NA
AXH63585.1\|3310664_3311306_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
AXH63586.1\|3311302_3312247_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
AXH63587.1\|3312652_3313630_+	6-phosphofructokinase	NA	NA	NA	NA
AXH63588.1\|3313813_3314827_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
AXH63589.1\|3315146_3316103_-	hypothetical protein	NA	NA	NA	NA
AXH64807.1\|3316228_3318109_-	glycoside hydrolase family 3 protein	NA	NA	NA	NA
AXH63590.1\|3318533_3319478_-	hypothetical protein	NA	NA	NA	NA
AXH63591.1\|3319911_3320682_-	triose-phosphate isomerase	NA	NA	NA	NA
AXH64808.1\|3320860_3321475_-	DUF1454 family protein	NA	NA	NA	NA
AXH63592.1\|3321525_3321945_+	DUF805 domain-containing protein	NA	NA	NA	NA
AXH63593.1\|3322002_3322749_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
AXH63594.1\|3323226_3324411_+	multidrug transporter EmrD	S4TR35	Salmonella_phage	8.9e-14	26.2
AXH63595.1\|3324453_3328263_-	hypothetical protein	NA	NA	NA	NA
AXH63596.1\|3328493_3330020_-	glycerol kinase	NA	NA	NA	NA
AXH63597.1\|3330395_3331092_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	2.6e-61	46.8
AXH63598.1\|3331983_3332223_+	cell division protein ZapB	NA	NA	NA	NA
3330336:3331122	attR	NA	NA	NA	NA
AXH63599.1\|3332832_3333357_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
AXH63600.1\|3333476_3334400_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
AXH63601.1\|3334587_3335922_-	HslU--HslV peptidase ATPase subunit	A0A173GFL6	Erwinia_phage	1.1e-41	28.0
AXH63602.1\|3335933_3336464_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_10

4325066 : 4340914

Morganella_phage(70.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AXH64440.1\|4325066_4326278_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	5.0e-129	55.4
AXH64441.1\|4326489_4327290_+	hypothetical protein	NA	NA	NA	NA
AXH64840.1\|4327285_4328041_+	protein kinase	NA	NA	NA	NA
AXH64442.1\|4328165_4328384_+	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	6.6e-08	45.3
AXH64443.1\|4328383_4328779_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	7.8e-31	52.1
AXH64444.1\|4328791_4329388_+	antirepressor protein	A0A1W6JPH8	Morganella_phage	6.6e-74	70.2
AXH64445.1\|4330088_4330280_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
AXH64841.1\|4330422_4330647_+	host cell division inhibitor Icd-like protein	A0A1W6JPK3	Morganella_phage	1.7e-11	54.0
AXH64446.1\|4330639_4330813_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AXH64447.1\|4330815_4331007_+	hypothetical protein	NA	NA	NA	NA
AXH64448.1\|4331003_4331183_+	hypothetical protein	NA	NA	NA	NA
AXH64449.1\|4331179_4331389_+	hypothetical protein	A0A1W6JPF1	Morganella_phage	1.8e-10	50.7
AXH64450.1\|4331385_4331970_+	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	3.1e-28	58.0
AXH64451.1\|4332139_4332334_+	hypothetical protein	NA	NA	NA	NA
AXH64452.1\|4332334_4332709_+	hypothetical protein	NA	NA	NA	NA
AXH64453.1\|4332695_4335431_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	0.0e+00	70.4
AXH64842.1\|4335899_4336292_+	osmoprotectant transporter ProQ	A0A1W6JPI6	Morganella_phage	1.8e-16	61.8
AXH64454.1\|4336366_4336876_+	hypothetical protein	NA	NA	NA	NA
AXH64455.1\|4337056_4337230_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
AXH64456.1\|4337229_4337568_+	hypothetical protein	NA	NA	NA	NA
AXH64457.1\|4337581_4340914_+	hypothetical protein	A0A1W6JNU2	Morganella_phage	7.2e-37	27.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP031122

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

23752 : 77375

Salmonella_phage(29.41%)

integrase,transposase

attL 18322:18341|attR 81712:81731

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
18322:18341	attL	NA	NA	NA	NA
AXH60630.1\|23752_25285_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AXH60631.1\|25376_26168_-	LysR family transcriptional regulator	NA	NA	NA	NA
AXH60632.1\|26188_27364_-	tetracycline efflux MFS transporter Tet(G)	NA	NA	NA	NA
AXH60633.1\|27467_28094_+	TetR family transcriptional regulator	NA	NA	NA	NA
AXH60634.1\|28090_28273_-	DUF3363 domain-containing protein	NA	NA	NA	NA
AXH60635.1\|28300_29515_-	chloramphenicol/florfenicol efflux MFS transporter FloR2	S4TR35	Salmonella_phage	9.8e-16	23.7
AXH60636.1\|29731_30703_-	dihydropteroate synthase	NA	NA	NA	NA
AXH60637.1\|30696_31044_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AXH60638.1\|31207_31999_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
AXH60639.1\|32004_32295_-	DUF1010 domain-containing protein	NA	NA	NA	NA
AXH60640.1\|32406_32904_-	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
AXH60641.1\|33048_34062_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
AXH60642.1\|34196_34901_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AXH60643.1\|35033_36074_-	KfrA protein	NA	NA	NA	NA
AXH60644.1\|39255_39816_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
AXH60778.1\|39918_40221_-\|transposase	transposase	NA	NA	NA	NA
AXH60645.1\|40159_41173_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
AXH60646.1\|41325_42066_+	subclass B1 metallo-beta-lactamase IMP-69	NA	NA	NA	NA
AXH60647.1\|42164_42719_+	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
AXH60648.1\|42881_43505_-	recombinase family protein	E5FFF9	Burkholderia_phage	3.7e-35	43.7
AXH60649.1\|43566_44784_-\|transposase	transposase	NA	NA	NA	NA
AXH60650.1\|44780_45689_-\|transposase	transposase	NA	NA	NA	NA
AXH60651.1\|45691_47410_-\|transposase	transposase	M4T586	Rhodobacter_phage	8.4e-05	25.6
AXH60779.1\|47341_47563_+	resolvase	NA	NA	NA	NA
AXH60652.1\|49446_50370_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	2.2e-177	99.7
AXH60653.1\|50449_51325_-	class A extended-spectrum beta-lactamase CTX-M-14	A0A1B0VBP7	Salmonella_phage	6.1e-153	99.6
AXH60654.1\|51574_52837_-\|transposase	IS1380 family transposase ISEc9	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
AXH60655.1\|54216_55131_-	DNA replication terminus site-binding protein	NA	NA	NA	NA
AXH60656.1\|55457_55949_-	hypothetical protein	NA	NA	NA	NA
AXH60657.1\|55945_56815_-	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	3.5e-23	35.1
AXH60658.1\|56819_57830_-\|integrase	integrase	A0A0K0N6I5	Gordonia_phage	3.1e-07	31.9
AXH60659.1\|57832_58369_-	hypothetical protein	NA	NA	NA	NA
AXH60660.1\|58361_58649_-	hypothetical protein	NA	NA	NA	NA
AXH60661.1\|58667_58988_-	hypothetical protein	NA	NA	NA	NA
AXH60662.1\|59210_59813_+	hypothetical protein	NA	NA	NA	NA
AXH60663.1\|59828_60281_-	hypothetical protein	NA	NA	NA	NA
AXH60664.1\|60447_60783_-	hypothetical protein	NA	NA	NA	NA
AXH60665.1\|60794_61037_-	hypothetical protein	NA	NA	NA	NA
AXH60666.1\|61041_61314_-	hypothetical protein	NA	NA	NA	NA
AXH60667.1\|61310_65573_-	type IV secretion protein Rhs	A0A2H4JHK7	uncultured_Caudovirales_phage	5.8e-23	53.4
AXH60668.1\|65705_66431_-	hypothetical protein	NA	NA	NA	NA
AXH60669.1\|66544_66946_-	hypothetical protein	NA	NA	NA	NA
AXH60670.1\|67165_67405_-	permease	NA	NA	NA	NA
AXH60671.1\|67477_67756_-	hypothetical protein	NA	NA	NA	NA
AXH60780.1\|67742_69470_-	DNA primase	A0A0P0ZFY3	Escherichia_phage	9.9e-14	32.6
AXH60672.1\|69647_70034_-	hypothetical protein	NA	NA	NA	NA
AXH60673.1\|70491_71343_-	NgrC	A0A219UQS0	Bacillus_phage	3.6e-09	29.4
AXH60674.1\|71417_71975_-	pyruvate dehydrogenase	NA	NA	NA	NA
AXH60675.1\|72048_72267_-	hypothetical protein	NA	NA	NA	NA
AXH60676.1\|72280_72550_-	hypothetical protein	NA	NA	NA	NA
AXH60677.1\|72542_73148_-	5'-deoxynucleotidase	NA	NA	NA	NA
AXH60678.1\|73219_73423_-	hypothetical protein	NA	NA	NA	NA
AXH60679.1\|73624_76078_-	phosphoadenosine phosphosulfate reductase	NA	NA	NA	NA
AXH60680.1\|76228_77375_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.8e-148	92.6
81712:81731	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP031123

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP031122

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection