CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP019600	Brachyspira hyodysenteriae strain BH718 chromosome, complete genome	3 crisprs	DinG,cas4,csa3,RT	0	4	1	0
CP019601	Brachyspira hyodysenteriae strain BH718 plasmid pBH718, complete sequence	0 crisprs	NA	0	0	0	0

1. CP019600

CRISPR-Cas detection and classification

Crispr_ID: CP019600_5

• CRISPR_ID: CP019600_5
• CRISPR_location: 1598348-1598465
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP019600_5

Consensus_repeat	Method
AATAAAGATCCTCTAAATCCTTATTATTC	CRISPRCasFinder

spacers of CP019600_5

>5.1|1598377|60|CP019600|CRISPRCasFinder
CAATTGACACATTAGTAAAAACAGCATAATTTTTCCATTTAAATATCTGTTTTTACGGAG

CRISPR arrays and Neighbor proteins around CP019600_5

CRISPR arrays

The CRISPR arrays of CP019600_5

>merge|CP019600|5|1598348-1598465|CRISPRCasFinder
AATAAAGATCCTCTAAATCCTTATTATTCCAATTGACACATTAGTAAAAACAGCATAATTTTTCCATTTAAATATCTGTTTTTACGGAGAATAAAGATCCTCTAAATCTTATTATTCT

>CP019600|5|4|1598348-1598465|CRISPRCasFinder
AATAAAGATCCTCTAAATCCTTATTATTC	CAATTGACACATTAGTAAAAACAGCATAATTTTTCCATTTAAATATCTGTTTTTACGGAG
AATAAAGATCCTCTAAATCTTATTATTCT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP019600.1|AUJ49795.1|1590214_1590424_+|hypothetical-protein	unknown	unknown	gnl|CDD|274898
CP019600.1|AUJ49796.1|1590486_1591233_-|hypothetical-protein	unknown	unknown	gnl|CDD|378635
CP019600.1|AUJ49809.1|1608286_1608712_+|zinc-ribbon-domain-containing-protein	unknown	unknown	unknown
CP019600.1|AUJ49805.1|1603332_1604511_+|TPR-domain-containing-protein	unknown	unknown	gnl|CDD|273380
CP019600.1|AUJ49793.1|1587689_1588010_+|YggT-family-protein	unknown	unknown	unknown
CP019600.1|AUJ49792.1|1587342_1587675_+|anti-anti-sigma-factor	unknown	unknown	gnl|CDD|132914
CP019600.1|AUJ49804.1|1601008_1603168_-|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl|CDD|273193
CP019600.1|AUJ49797.1|1591765_1592635_+|membrane-protein	unknown	unknown	gnl|CDD|223769
CP019600.1|AUJ49811.1|1609494_1610481_+|glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl|CDD|381315
CP019600.1|AUJ49798.1|1592665_1593784_+|ATPase-AAA	unknown	unknown	gnl|CDD|336785
CP019600.1|AUJ49800.1|1595645_1596788_+|variable-surface-protein-VspF	unknown	unknown	gnl|CDD|368488
CP019600.1|AUJ49807.1|1605500_1606307_-|aminopeptidase	unknown	unknown	gnl|CDD|176452
CP019600.1|AUJ49810.1|1608799_1609339_-|hypothetical-protein	unknown	unknown	unknown
CP019600.1|AUJ49801.1|1596997_1598083_+|cell-surface-protein	unknown	unknown	gnl|CDD|368488
CP019600.1|AUJ49808.1|1606752_1607958_-|MFS-transporter	unknown	unknown	gnl|CDD|340883
CP019600.1|AUJ49802.1|1598615_1599794_+|variable-surface-protein-VspF	unknown	unknown	gnl|CDD|368488
CP019600.1|AUJ49794.1|1588018_1590157_+|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|276809
CP019600.1|AUJ49799.1|1594114_1595275_+|variable-surface-protein-VspE	unknown	unknown	gnl|CDD|368488
CP019600.1|AUJ49803.1|1600001_1601003_+|ATPase	unknown	unknown	gnl|CDD|372314
CP019600.1|AUJ49806.1|1604882_1605389_-|NUDIX-hydrolase	unknown	unknown	gnl|CDD|240048

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP019600.1|AUJ49795.1|1590214_1590424_+|hypothetical-protein	gnl|CDD|274898	TIGR03980, conserved_hypothetical_protein, hybrid cluster protein-associated redox disulfide domain. Members of this protein family resemble the domain of unknown function DUF1858 described by pfam08984, but all members contain an apparent redox-active disulfide. In at least one member protein, a cysteine in the CXXC motif is substituted by a selenocysteine. Most member proteins consist of this domain only, but a few members are fused to or adjacent to members of the hybrid-cluster (prismane) family or the nitrite/sulfite reductase family. [Energy metabolism, Electron transport].	1.48507e-21
CP019600.1|AUJ49796.1|1590486_1591233_-|hypothetical-protein	gnl|CDD|378635	pfam11306, DUF3108, Protein of unknown function (DUF3108). This is a bacterial family of putative lipoproteins. Structure 3fzx, the first structural template for this large family including several homologs in the human gut microbiome and in metagenomic datasets, folds into a beta barrel that topologically looks like a small-scale porin (such as FepA). Bacteroides fragilis glyA is a putative exported protein, and this fold is of the YmcC-like type, with a predicted signal peptide SpI cleavage site AGAMA|QNQDC, and a Phobius server prediction of non-cytoplasmic localization for amino acids 21-236. The possibility of it being a membrane protein can be ruled out by the hydrophilic nature of the solvent exposed surface outside the barrels. Analysis of sequence conservation suggests that an area near Glu172/Trp206 is potentially interesting. These two residues are also conserved in Dali hit Structure 2in5, a hypothetical lipoprotein classified as a new YmcC-like fold in SCOP (SCOP:159271, with a 12-stranded meander beta-sheet folded into a deformed beta-barrel) despite large structural differences between the two structures, suggesting similarity in function.	1.77105e-13
CP019600.1|AUJ49805.1|1603332_1604511_+|TPR-domain-containing-protein	gnl|CDD|273380	TIGR00990, Mitochondrial_import_receptor_subunit_TOM70, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70). [Transport and binding proteins, Amino acids, peptides and amines].	8.55785e-19
CP019600.1|AUJ49792.1|1587342_1587675_+|anti-anti-sigma-factor	gnl|CDD|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	1.76302e-14
CP019600.1|AUJ49804.1|1601008_1603168_-|single-stranded-DNA-specific-exonuclease-RecJ	gnl|CDD|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	1.25465e-58
CP019600.1|AUJ49797.1|1591765_1592635_+|membrane-protein	gnl|CDD|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	2.79948e-08
CP019600.1|AUJ49811.1|1609494_1610481_+|glyceraldehyde-3-phosphate-reductase	gnl|CDD|381315	cd19089, AKR_AKR14A1_2, AKR14A family of aldo-keto reductase (AKR). Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ), also called GAP reductase, is a founding member of aldo-keto reductase family 14 member A1 (AKR14A1). It catalyzes the stereospecific, NADPH-dependent reduction of L-glyceraldehyde 3-phosphate (L-GAP). It is also involved in the stress response as a methylglyoxal reductase which converts the toxic metabolite methylglyoxal to acetol in vitro and in vivo. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2). It catalyzes the conversion of 3-hydroxybutanal (3-HB) to 1,3-butanediol (1,3-BDO) by using NADPH as a cofactor.	0
CP019600.1|AUJ49798.1|1592665_1593784_+|ATPase-AAA	gnl|CDD|336785	pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.	2.07907e-42
CP019600.1|AUJ49800.1|1595645_1596788_+|variable-surface-protein-VspF	gnl|CDD|368488	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein. This family consists of several variable surface proteins from Serpulina hyodysenteriae.	1.25828e-173
CP019600.1|AUJ49807.1|1605500_1606307_-|aminopeptidase	gnl|CDD|176452	cd08770, DAP_dppA_3, Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized putative peptidases.	2.80434e-120
CP019600.1|AUJ49801.1|1596997_1598083_+|cell-surface-protein	gnl|CDD|368488	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein. This family consists of several variable surface proteins from Serpulina hyodysenteriae.	5.00224e-142
CP019600.1|AUJ49808.1|1606752_1607958_-|MFS-transporter	gnl|CDD|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.11378e-15
CP019600.1|AUJ49802.1|1598615_1599794_+|variable-surface-protein-VspF	gnl|CDD|368488	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein. This family consists of several variable surface proteins from Serpulina hyodysenteriae.	9.56414e-160
CP019600.1|AUJ49794.1|1588018_1590157_+|tetratricopeptide-repeat-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.02267e-07
CP019600.1|AUJ49799.1|1594114_1595275_+|variable-surface-protein-VspE	gnl|CDD|368488	pfam05540, Serpulina_VSP, Serpulina hyodysenteriae variable surface protein. This family consists of several variable surface proteins from Serpulina hyodysenteriae.	3.93775e-163
CP019600.1|AUJ49803.1|1600001_1601003_+|ATPase	gnl|CDD|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	3.18598e-58
CP019600.1|AUJ49806.1|1604882_1605389_-|NUDIX-hydrolase	gnl|CDD|240048	cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.78526e-23

Protein sequences

>CP019600.1|AUJ49801.1|1596997_1598083_+|cell-surface-protein
MKKIMLAAIAILTIFSASALGMYGDQDDWIDFLTAGNQLRARMDQLGFVLGNNTIKGTFGLRTQDAVTSLGSIISGETDNLGLDATVSMGIGYTSDIFGIGLGYNFTYYNSTLGVHTPVLMVNALNNNLRIAIPIQIAASKDPFGKDTISQYKDYLGISTDIQIRYYTEIDVFNQVRLYIKYGQSGYKNVKNNFDMFAQSFGFETRLYFLNRTIGNVNINPFIKVSYNTALASSDVMVRAGESLVNTTYSKKENKWEKNPYNVTAAAVLGLTANSDMLSLYVEPSLGYNAVYKGKYKTDSKYYKVQHNLYWGAYAELYITPVQDLEWYFEMDINNGNSRQTSSIPIYFESTTGITWYLPEL
>CP019600.1|AUJ49800.1|1595645_1596788_+|variable-surface-protein-VspF
MKKVLLTAMALLTIASASAFGMYGDRDSWIDFLVHGNQLRARMDQLGFVLGNGTIKGTFGFRSQSAVTKIGNILSGNTGNVDLQTTISAGIGYTSEPFGIGVGYNYTYVNPRLGVHTPVLMINALNNNLRIAVPVQIAVSHDPFNDSAKFPYSSSTKDYMGISTDIQLRYYTGIDAFNAIRVYFKYGQAGFKTANGASEYFAQSLGFEARFYFLNTPVGNVTINPFIKVAYNTALQGYNRTVRAGEAVTYDASKEYAGLGAGSFDAKDQKWDSNPYDVKAQAVLGITANSDVVSLYVEPSLGYQATYLGKMTKNGVVAWDHKVQHSLAWGAYAELYVRPVQDLEWYFEMDVNNGGTRQPSNIPVYFKTTTGITWYLPALN
>CP019600.1|AUJ49799.1|1594114_1595275_+|variable-surface-protein-VspE
MKKFLLTVLAILTIASGSVFGMYGADNTWLFFLIHGNQFRARMNQLGFTLGNGTIKGTFGFKANTLINGSILNTGNKENQNPLEATISAGIGYTGDGFGVGVGYNYTYTAANTIQTKAAKGINTHTPVITFNAVNNNLRVAIPVSIAVEKDIGKLGNMDRKDYLGLSIPAQIRYYTGIDAFNYIRFEFNYGLNKYNGVENNTTTEYQAQTISFQLRLHFLNTVLGNNVTVNPFLRVDFASTVGAKGKGNVVFPASTAFDGRLTAWAANAWADDPNSIYDRELYDLKIIPSVSLSVNTDYVNLIFEPGLGYRVQDDGVKGSKLTHTLYWQAYGEIYIRPVQDLEWYFEMDVNNGVPKLQGNPIASGNSMPVVFGANTGITWYLPALQ
>CP019600.1|AUJ49798.1|1592665_1593784_+|ATPase-AAA
MKKDNINNNEEKIHQKPLMEELYKEELEALKKEDKNNKPKNWNLSPQAVRDFILGKKLKSGVEIKRKFYGDDSLVERAIITLAGNRGLMLVGEPGTAKTMLSELLSAAISGNSTVTIQGTAGTNEDNIKYSWNYAMLFAKGPVEEALIPSPVYTGMNEGIITRFEEITRCPLEIQDSLISILSDKIMNIPEQNRVLFANAGFNIIATANTRDKGINEMSSALKRRFNFETVEPIKNPKLEGEIITNQCQTLLELADIDIDIEYDVVDILATTFNELRSGKSFENAKIQELNSVMSTAEAVSVYYQSALHSYYYGDKNIKMETIVGNLIGSVAKENKDDIPKLKNYFNNSVKIKAEKFGKKWKDYYESRNLIK
>CP019600.1|AUJ49797.1|1591765_1592635_+|membrane-protein
MAIFLLIGVMALSASAIFVKLANAPSSIIAFYRIFISFCFITVITISKKSSREELLSISKKEIILSVISGLSLALHYFLWFQSLSLTSVASSTVIVTLQPLFAFVAGHFFFKEQYSKLAILGFVIAVTGSVIIGWGDFQISSRALLGDFIAFISAGLISAYFIIGQYTRKRLSALTWISLTYFSAFIFLGILSYIMKIPFIGYSLNTWINILGITFISTMLGQVIFTWLLKYFSATIISMTILGEAVGTCILGYFILHESISFKQFIGISVILIGIGLFLWEKRKTISQ
>CP019600.1|AUJ49796.1|1590486_1591233_-|hypothetical-protein
MKKYIFIIMALISNIVFGYNQTFKVGEYIKYDVLAQVPEFNISGKVGMLEAEVLAISNVNGIPAYHLYAHVYTTGAANLLYKVSDIFEAWVSTNDFKPILLKKDTTEGDWTNKESLAFHGNYYLFNDKRTVDEKIEFEGMAFDALSLVFFMRFVDKNIGTFKINWLEGKNVKKDIRFTIENGEELKTKLERNKLSTVRIYEKEKYGTDALIAKDKYNQVPLDVIIAEQKVYGLTIRVRGIIREYKDGK
>CP019600.1|AUJ49795.1|1590214_1590424_+|hypothetical-protein
MINKTMSIGEIIQIFPDSVEIMMGRGLHCVGCHVASWESLEEGCRGHGMSDELIDSLVKEINDKLEASK
>CP019600.1|AUJ49794.1|1588018_1590157_+|tetratricopeptide-repeat-protein
MSSLDEISKYIDDGDYRKAIEELDLIISREPDNARAFYMRGKSAFIELQNEEFDKNKYDARIALIYSTIEYDLNKSIDIDPNITDAYRGLMYLNRDLKNVDKEREYAQILFEKDNTAYDALLILASSYLNNGENEADFHQAIGYYDDFIKNVKPENSKVARFERGLCYYNLNILTKADIEANKLIYDFPFYDDAYFLKGIILAKNGTKSEFYDDAIFFLDRAVELNASNYNAIYERGEWYFNKENYRKAIENYNELLKHNNKYRLNALLGKIQALHDLIIENENENYPDSQEEGKDLAEVFYLLDKVIDVIGIKSLQYRYYRGNLYAYQGEIKKAIAEFKKILNENKESWIYEKIAELYHNYAKNDDDYREALKYLSHIDKIEYKYSTYYLSIFSNYEIKNYEAAAQLCREFFEYVNDDDDEVYYIRFIYAHSLQMIGSNDYKLILDNFKICLNSNLDKAPIYRSIAKIMLYNMPNEYVNEGIYMLKKALELNDAISYHIYAKELFYGDIITPYPELAISMANIAFDIDNTLECALTVIGKAYELGRGIEQDDFKAFEIYSKAMTICKNSNSKCSCSNGLTAHCYYKGIGVEKNEEMAYDIIKKTVDALGNNSHDYVALLYSYFALNNIEGFDLVTSLTLFENIENYSHNIYIIMTLKRIYKKLGKYNDVRRMAKMEKKALENTGELNLNYIRKYIKNFNNFYPILNRDFTL
>CP019600.1|AUJ49793.1|1587689_1588010_+|YggT-family-protein
MLIETIRFIYYLLMQTLRLYSFIWFVWIILSWLQAFGAMHLDYYNPIINFFYKITDGVIDKIFGGRRLIVGILDLSPLVFLLVLQLVVPMILRIVFQFLLNIIARV
>CP019600.1|AUJ49792.1|1587342_1587675_+|anti-anti-sigma-factor
MVRTIIEDKTAIINIEKNIISENVDILEEKLNYIKNAGVLNLIFDFHNIEYMCSSALGLIASALRLSGENGGVVYFCSLSKQLKSLFEATKFLSIVNTANNIDEALKNIK
>CP019600.1|AUJ49802.1|1598615_1599794_+|variable-surface-protein-VspF
MKKVLLTAMALLTIASASAFGMYGDRDSWIDFLTHGNQFRARMDQLGFVLGNGTIKGTFGFRSQAATTLWGNILKTGETGNIDLTTTISAGIGYTSEPFGIGVGYNYTYMHERLGVHTPVLMINALNNNLRIAVPVQIAVSHDPFNDSAKFPYSSSTKDYMGISTDIQLRYYTGIDAFNAIRLYFKYGQAGFKTANGASEYFAQSLGFEARFYFLNTPVGNVTINPFIKVVYNTALKGVSRTVRAGEAVQNTVSGYNPYDPNSKLDAFAGRNIDKDFKWDSNPYDVTVQAVLGITANSDIVSLYVEPSLGYKANYDGQYRDVYTSGDTIKGDDPKVEHKLAWGAYTELYIRPVQDLEWYFEMDVNNSNEKKNGVPVNFNASTGITWYLPALN
>CP019600.1|AUJ49803.1|1600001_1601003_+|ATPase
MDSFEKLEQIFKEPITIDNINRINDCFIRYLFSAEGSEAIVLNFINSVMKNLDFETFVKVEILNPFSLSKYLKSKESIMDIRCVTESGQVVIIEIQLQGNNEFIYRSLFYWAKGYSVMLDRGENYNKLQALIIINILDFKLIENIDDIHTCYVLKEIKHNNILTDHCQIHYLELPKFNNNTNIKDIKKEVLSWIKFFKGEDMKTLLKEDTVFELVKEKSESFLCDNPLIDTYKRKEIDEYFNKRMLDYEIKNAMNKGIQEGIEKGIQEGIEKGIQEGIEKGIQEGIEKGIQEGMEKGIQEGKIEIARNLKKSGIDIKIISDNTGLSIEQIEKL
>CP019600.1|AUJ49804.1|1601008_1603168_-|single-stranded-DNA-specific-exonuclease-RecJ
MDINNLNTTILELLKLRGITSKEDIYDFFFQDIYSLSNPFNIRDVNVFVDRVKEAIENDEKILVYGDKDADGITAASIIYNTLKVVTKNVEAFVPNHTTGYGLSKAVIEEYANSGVSLIITVDCGISNAEEVEFARDLSIDIIVTDHHDIPEILPNAYAVFNPKISNTGFVSKNFSGCAVAFKLMQAFVFSYTKLYNKDIIVLDYEIDKSKNVLKRIRALKATNFVISDEVFGFELINDNNCYKSIYADYYDELMSEDEVLEELATYMFEGDGCVLVLTGGEERLKKLLNFYERYEIYLPEYDNVYDLLQLGAKYGNVNIKTTKTLDDFALALNVNIYRYDDIAYRDLIIKMEIFRRLFYISQKQLQSYIKKKSILVLFGSVADVVPLIEENRAYVKCALKELEKPSHIRYNIILERINLLNTKIDTQAISWRLAPFINAAGRMGSPETALKLLTCEIKEEAVTLSNEVYNMNETRKSLTESNFTIVNEYIKTNSCLKLPIIVVKSKKIEQGLTGLIAGKVLSEYGKTAVIMHESDDGVCIGSIRSRGDDNARDMLEYANAYLTKFGGHKNAAGFTLNTDNFDKFQSKIIKYASSQNFQTEKNEDEFDLEISFKDIDIKLAKLLEMFEPYGCGNEEPLFMSKKVKVNSINKMKKNNKTHLRLELSQDNKKVNAIMWDKSDEEADKLLSSDYIDIIYKLKVNRFNGSEDARIYVESYKIF
>CP019600.1|AUJ49805.1|1603332_1604511_+|TPR-domain-containing-protein
MAEKDIKNFFNKAYDAFKSKNYKLAIEYFSEVIKLDSTIYEAYYNRANAKANIDDEASYKSAVEDYTWTIKLNDQFAAAYYNRGIINRSLGNTEEALKDFDKTIELNYNLEEVYYVRANTKASLKDYKGSIEDYNKAIEVYPHFADAYYNRALSKNALGEYKEAIKDYDKAIEYNSHFIDAYNNRGNVKEKLGNFNEAIDDYTNAIHINREFADGYFNRANAKFHIKDYKGAVEDFDELIKINPKYTKAYLNRGIIAMTMEAYQEAIKDFDKVIELEPNLADAHYNKAVALNHLGIYDEAILYYNKAIELNPNYSESYFNRGISKSKTAYMKKDKMNEDEYKNMIKESEDDFDKAYDLANEHIKNIISDGLKKLAFLNMEAAENFCKKHDIK
>CP019600.1|AUJ49806.1|1604882_1605389_-|NUDIX-hydrolase
MAEIWDIYDINKNKTGRFHQRGIPLNKNDYHIVIHAWVVNSNDEVIITKRHKSKKICPDMWECTEGSILAGEDSIDGALRELEEEIGLSFKKDEAVFLTSFVLDFSNTIVDSYMFRRNVNIEDLVLQENEVSDAMIVNREKYLEMCKSGDIISSIRYFYDIYDKLNNK
>CP019600.1|AUJ49807.1|1605500_1606307_-|aminopeptidase
MKVFISADIEGITTTTQWPDTDAGSLTYKDHALQMTKEVKAACEGAIDAGAKEIFVKDAHDSAMNIFQTALPECVKIHRRWSGDPYSMIEGIDESFDAIMFIGYHNAASIGNNPLSHTMNTRNVYVKLNEVLASEFMFFSYAAAYRKVPTVFLSGDKGLCEVAQNMQPNHPNLVTLPVKEGIGYSTINYSPNLMVKMIKEKTKEALSQDFKGKLLKLPNHFKLEICYREHGYAHKVSFYPGAKKINDTTVIFENNDYYEILRALKFIL
>CP019600.1|AUJ49808.1|1606752_1607958_-|MFS-transporter
MTILVYSMPFLLYLCSSIFSTVLVINASISGATPFFVSLIGVSYGMGMMLTAGTFSRIKIQKKYYTNLIYVEAVLQLIIAAACLIFLPPEMSLFYSFLYGCSATIFFVCFQSSLDVVSKDLPVTLSGALFIFSWSLGFALGPTITGMIYKFDYKLGFYFVIVVSVIMFILFYLSRHLRFKANNKKRNWNMPFMRAPRYKVHIGWLVIFVGAMVLHTLRFMFLDYGIKVIGFSEADSSLLVGSLSAFMAVGSLSSAFCLRFLEKKRVFTIVGILTPAALLLITFTRNFWLFLVAFMFLGFVSGFGYFFGLYYALADQDNAPRNVAVNEALTGVAALFIPFVVGYLASNFSYFVGFLFMMTVSLICYIIAIYIMWQKKRRALLKEKFNKMIDDIDSKYIDKTL
>CP019600.1|AUJ49809.1|1608286_1608712_+|zinc-ribbon-domain-containing-protein
MYKIYYASVIIILFIISCNDKKLESKQYRLNIAETNEVINIKSRNFDGISLIKNSSFTAYPNITINELLSPFSSVEWQDFISEDDYNRYIDIVARYDTNEYIIQFQVTDQYRWELYAFEINKTPYTIDIVANELYKLYTNK
>CP019600.1|AUJ49810.1|1608799_1609339_-|hypothetical-protein
MFKKLFIVVGLMSVLAGCETMQPKNNDTIVKNDNSSNEDKKEETITREDTPKMKVTVYGADKEIQAVEINDKTYYVIGGKDVENMTEADIKKSSLVAPLKVTEETINGTRGIVVTYYDVKVFLGKRTGTGTIVGIFEPQKNDWTTGNDLDRSLSIQIKLSRNIAGPIDIKRGSISLAFN
>CP019600.1|AUJ49811.1|1609494_1610481_+|glyceraldehyde-3-phosphate-reductase
MQAADNRYDNIIYNRCGKSGLKLPIVSLGLWHNFGENCDYNNMKDMVKTAFDNGITHFDLANNYGPPYGSAEISMGKILNDGLNKYRDELIISTKAGYDMWEGPYGNWGSKKYLIASINQSLKRLNLEYVDIFYHHRMDPESPLEETMEALTRIVKSGKALYIGLSNYDGATMEKASKLLYMANVPFIINQNRYSIFDRTIENNGLKLKAKKLGKGIIAYSPLAQGLLTDKYLNGIPSDSRIAADGRYLKHDAITRKRLYKIEQLNNLAKERGESLAQMALRWVLKDEEITSVLIGASKPSQIIENLKIINKMPITDDELRKIDDFSL

Crispr_ID: CP019600_7

• CRISPR_ID: CP019600_7
• CRISPR_location: 2254717-2254813
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP019600_7

Consensus_repeat	Method
CAATTTTTATTAGCAACAATATAAAA	CRISPRCasFinder

spacers of CP019600_7

>7.1|2254743|45|CP019600|CRISPRCasFinder
ATTGTGAGCGTCTGGCAAGTTTACTTGACAGACCCGATTAGCGAA

CRISPR arrays and Neighbor proteins around CP019600_7

CRISPR arrays

The CRISPR arrays of CP019600_7

>merge|CP019600|7|2254717-2254813|CRISPRCasFinder
CAATTTTTATTAGCAACAATATAAAAATTGTGAGCGTCTGGCAAGTTTACTTGACAGACCCGATTAGCGAACAATTTTTATTAGCAACAATAGAAAA

>CP019600|7|6|2254717-2254813|CRISPRCasFinder
CAATTTTTATTAGCAACAATATAAAA	ATTGTGAGCGTCTGGCAAGTTTACTTGACAGACCCGATTAGCGAA
CAATTTTTATTAGCAACAATAGAAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP019600.1|AUJ50390.1|2255875_2256625_+|ankyrin-repeat-containing-protein	unknown	unknown	gnl|CDD|293786
CP019600.1|AUJ50383.1|2248917_2249421_+|ATP-synthase-F0-subunit-B	unknown	unknown	gnl|CDD|349951
CP019600.1|AUJ50385.1|2250031_2250673_+|ATP-synthase-subunit-delta-2	unknown	unknown	gnl|CDD|365949
CP019600.1|AUJ50387.1|2252262_2253141_+|ATP-synthase-F1-subunit-gamma	unknown	unknown	gnl|CDD|376304
CP019600.1|AUJ50397.1|2265940_2266309_+|membrane-protein	unknown	unknown	gnl|CDD|377316
CP019600.1|AUJ50391.1|2256858_2257569_+|ankyrin-repeat-containing-protein	unknown	unknown	gnl|CDD|293786
CP019600.1|AUJ50379.1|2246209_2247088_-|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
CP019600.1|AUJ50396.1|2264711_2265251_-|N-acetyltransferase	unknown	unknown	gnl|CDD|379112
CP019600.1|AUJ50393.1|2259073_2260252_+|RNA-splicing-ligase-RtcB	unknown	unknown	gnl|CDD|376465
CP019600.1|AUJ50395.1|2262851_2264657_+|chemotaxis-protein	unknown	unknown	gnl|CDD|214599
CP019600.1|AUJ50384.1|2249457_2250006_+|ATP-synthase-subunit-delta-1	unknown	unknown	gnl|CDD|365949
CP019600.1|AUJ50382.1|2248660_2248882_+|ATP-synthase-F0-subunit-C	unknown	unknown	gnl|CDD|349414
CP019600.1|AUJ50386.1|2250699_2252199_+|ATP-synthase-subunit-alpha	unknown	unknown	gnl|CDD|236448
CP019600.1|AUJ50381.1|2247712_2248624_+|F0F1-ATP-synthase-subunit-A	unknown	unknown	gnl|CDD|376294
CP019600.1|AUJ50398.1|2266397_2267873_-|peptidylprolyl-isomerase	unknown	unknown	gnl|CDD|379299
CP019600.1|AUJ50389.1|2254871_2255636_+|ankyrin-repeat-containing-protein	unknown	unknown	gnl|CDD|293786
CP019600.1|AUJ50394.1|2260534_2262694_+|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl|CDD|273923
CP019600.1|AUJ50388.1|2253783_2254524_+|ankyrin-repeat-containing-protein	unknown	unknown	gnl|CDD|293786
CP019600.1|AUJ50392.1|2257958_2258867_-|radical-SAM-protein	unknown	unknown	gnl|CDD|275263
CP019600.1|AUJ50380.1|2247233_2247569_+|anti-sigma-factor-antagonist	unknown	unknown	gnl|CDD|132914

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP019600.1|AUJ50390.1|2255875_2256625_+|ankyrin-repeat-containing-protein	gnl|CDD|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	3.67162e-20
CP019600.1|AUJ50383.1|2248917_2249421_+|ATP-synthase-F0-subunit-B	gnl|CDD|349951	cd06503, ATP-synt_Fo_b, F-type ATP synthase, membrane subunit b. Membrane subunit b is a component of the Fo complex of FoF1-ATP synthase. The F-type ATP synthases (FoF1-ATPase) consist of two structural domains: the F1 (assembly factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha (or A), beta (B), gamma (C), delta (D) and epsilon (E) subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons through the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Candidatus Methanoperedens.	1.07498e-27
CP019600.1|AUJ50385.1|2250031_2250673_+|ATP-synthase-subunit-delta-2	gnl|CDD|365949	pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.	8.54364e-33
CP019600.1|AUJ50387.1|2252262_2253141_+|ATP-synthase-F1-subunit-gamma	gnl|CDD|376304	pfam00231, ATP-synt, ATP synthase.	2.94579e-85
CP019600.1|AUJ50397.1|2265940_2266309_+|membrane-protein	gnl|CDD|377316	pfam04342, DMT_6, Putative member of DMT superfamily (DUF486). This family contains several proteins of uncharacterized function. The family is represented in the Transport classification database as 2.A.7.34, though the exact nature of what is transported is not known.	1.33922e-50
CP019600.1|AUJ50391.1|2256858_2257569_+|ankyrin-repeat-containing-protein	gnl|CDD|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	1.30771e-15
CP019600.1|AUJ50379.1|2246209_2247088_-|TetR-family-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	3.57237e-09
CP019600.1|AUJ50396.1|2264711_2265251_-|N-acetyltransferase	gnl|CDD|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.6038e-30
CP019600.1|AUJ50393.1|2259073_2260252_+|RNA-splicing-ligase-RtcB	gnl|CDD|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	6.5666e-70
CP019600.1|AUJ50395.1|2262851_2264657_+|chemotaxis-protein	gnl|CDD|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	9.64199e-49
CP019600.1|AUJ50384.1|2249457_2250006_+|ATP-synthase-subunit-delta-1	gnl|CDD|365949	pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.	3.37691e-33
CP019600.1|AUJ50382.1|2248660_2248882_+|ATP-synthase-F0-subunit-C	gnl|CDD|349414	cd18121, ATP-synt_Fo_c, membrane-bound Fo complex of F-ATP synthase, subunit c. Subunit c (also called subunit 9, or proteolipid) of the Fo complex of F-ATP synthase. The F-ATP synthase (also called FoF1-ATPase) consists of two structural domains: the F1 (factor one) complex containing the soluble catalytic core, and the Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F1 is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1, while Fo consists of the three subunits a, b, and c (1:2:10-14). An oligomeric ring of 10-14 c subunits (c-ring) make up the Fo rotor. The flux of protons though the ATPase channel (Fo) drives the rotation of the c-ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the c-ring of Fo. The F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts, or in the plasma membranes of bacteria. The F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis. This group also includes F-ATP synthase that has also been found in the archaea Methanosarcina acetivorans.	1.18648e-14
CP019600.1|AUJ50386.1|2250699_2252199_+|ATP-synthase-subunit-alpha	gnl|CDD|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
CP019600.1|AUJ50381.1|2247712_2248624_+|F0F1-ATP-synthase-subunit-A	gnl|CDD|376294	pfam00119, ATP-synt_A, ATP synthase A chain.	1.70779e-47
CP019600.1|AUJ50398.1|2266397_2267873_-|peptidylprolyl-isomerase	gnl|CDD|379299	pfam13623, SurA_N_2, SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.	8.37339e-09
CP019600.1|AUJ50389.1|2254871_2255636_+|ankyrin-repeat-containing-protein	gnl|CDD|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	6.77153e-20
CP019600.1|AUJ50394.1|2260534_2262694_+|PTS-glucose-transporter-subunit-IIA	gnl|CDD|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.14588e-170
CP019600.1|AUJ50388.1|2253783_2254524_+|ankyrin-repeat-containing-protein	gnl|CDD|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	3.32814e-20
CP019600.1|AUJ50392.1|2257958_2258867_-|radical-SAM-protein	gnl|CDD|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	1.18867e-24
CP019600.1|AUJ50380.1|2247233_2247569_+|anti-sigma-factor-antagonist	gnl|CDD|132914	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.	4.66604e-28

Protein sequences

>CP019600.1|AUJ50388.1|2253783_2254524_+|ankyrin-repeat-containing-protein
MKKMLLISFVLMITFIVSCGKKEEASISNNSVYVSDPNNIYHKTYTNVVKIQGKFVNINPAFYYGNRKEGEYSEEYDIFEAIKNHSLKRVMELIEDGEDINQNDRDFIIHSELMDANYFIEGSTPLIFAVFYRDLGVMKYLLDNGADPYIKDDSSKNSFLWACGVGNVDVIKMLVEFDSDLVDSQDRFGLNGLHMAAWNDNVEVFEYLINDLGMDINSTDEHGNGVLYYATEYATLEKLRELGAEE
>CP019600.1|AUJ50387.1|2252262_2253141_+|ATP-synthase-F1-subunit-gamma
MAEKLNVLKARIKAVSSTHKITKTMDMIARSRTAKILTVEQGMRPFTQKLNRIVEDLSHSDMDHVHPLLAPKKKIKNIILFVVTSSRGLCGSYNTKIFDEAMERIRHHHRHGREVQLHVLGKKGEVYFEKQGIPIARKYPRIDEESTFDDCATVVQRFMHEYAVDNASRVEVIYTRYYTRVVHIPKIKSLIPMIPDEEDIEGHKIKKKLDYVIEPNVDDVLKEVVPMAIKTYFYFMLTSSFLSENAERAIAMRNATDNAERLLTDLKNKANRARQEHITNELLDIIGGSEAI
>CP019600.1|AUJ50386.1|2250699_2252199_+|ATP-synthase-subunit-alpha
MNIKASEIAAVLKEEIKNYKADFTPNEVGVVVEVGDGIARIIGLPHVMANEMILFESGAVGLAFNLEEETIGAIVLGDYYGIKEGSKVSRLKRILEVPVGDALLGRVVNPLGVPIDGHGEITTDKRRVIEFPAPGIADRQAVKQPLQTGIKAIDSMTPIGRGQRQLIIGDRGTGKTSIALDAIINQKGTGVICIYVAIGQKASTVAGVVDTLRQHGALEYTIVVAATAADSAPLQYIAPYAGCAMAEYFMYEQKKDTLIIYDDLTKQANAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAAKLSDELGGGSLTALPIIETQDNEVSAYIPTNVISITDGQIYLLTSLFMSGVRPAIDVGISVSRVGGNAQTKAMKKVAGTLRLDLASYRSLEAFSQLGIGLDKATLAQLDRGAKMVELLKQKQYSPIPFEEQVVVIFAATKGFLDNIEVDRVHEFEWRLLQYMRADKQNILDDIREKKDIEDMDGLYKIIEEFKSKF
>CP019600.1|AUJ50385.1|2250031_2250673_+|ATP-synthase-subunit-delta-2
MDPIAENILSDLKKEVLREVTREKASRFSRIVKNESSAKNYAKAMFDIASDIGKIEVIKSDLNVVYSSLLVDNDIFNFFKSSFIDGHLRMRILKKIYADKILEETFNLIAILVERDMINILFAIIVEYENLCNEYYNIIVVKITTASNMTDTEDMNKLKDHITNMISDKDIHFTFNIDENIIGGVVIEVEDVVYDYSVRRLLTELKSSISENN
>CP019600.1|AUJ50384.1|2249457_2250006_+|ATP-synthase-subunit-delta-1
MKESDKLQILKPTASAIFDIARELGMIKEIYNELSECSKLFQDIDIKKYFFDKSISKKDKKELIDKRLKPILSKETYAFVSILTEHDSIDVLPDIVALYKEIADDYSNIVRVRIITASTIDDKTVEDIIQTVKCFSSNEISYETIVDENIIGGIIVYIGSVVYDYSIKKQIDLLQSKFTYGN
>CP019600.1|AUJ50383.1|2248917_2249421_+|ATP-synthase-F0-subunit-B
MALLKIDPGIIIWTWITFLLVLAILGASTWKIILKGLNARADKIQEDLEEAEKTRENAKKSLAAYREQIDNAKVEASAIIENARVEANRIRDKIINNAREEAELNKNKIMSEIDRSKEEAMNSVKKQALDIAVVMAETILKRNINKEDNQALINEFINNANKENSQK
>CP019600.1|AUJ50382.1|2248660_2248882_+|ATP-synthase-F0-subunit-C
MELSILGAAIGAGLAAIGVGLGIGFIGSRAVEGIARQPEVSGKIQTAMLIAAALIEGVGLFALVICILALFTK
>CP019600.1|AUJ50381.1|2247712_2248624_+|F0F1-ATP-synthase-subunit-A
MIKELFLLRKVFILTLILSCVFSVNVLYGAETINDYIMEEITDNTSHPFYTIPIKFGKYIDFDFKITKHIILVTLAGILSVCSMKYLAHKLKRPLNRPTYLQSILEGLIDYMNKDVIGATLGEEGKKYVPFCLTVFLFVLFSNILGLIPASIKFPTEYGNHSYIAGGLGANIGFTAAIAIVVFIVYIVAGIRKKGIIKYWTSLVPKGLPIPLIPIIWVLEFITLFNRAFALAIRLFANITGGHIMMIVIPYLIVMSGTLLVSPFAVLFLGFIYVLEMFVAVLQAYIFSLLSAVYIGIAISDEH
>CP019600.1|AUJ50380.1|2247233_2247569_+|anti-sigma-factor-antagonist
MEVNIKELENNTVILKLDGDIDVYTSSDLKDSIFSQIELGAKKIIIDMEDVYYIDSSGIGVFISALGTFKKVNGKICFVKVTDPVKKVFELTKINSFFPVFTTETEALANF
>CP019600.1|AUJ50379.1|2246209_2247088_-|TetR-family-transcriptional-regulator
MYKNRKFPIQNILTIKSNCNNMYFTNKNDTSIVFIFILIFQVRGEHQNNTMPKVNQEYFENKRKIILDAAMSVFFKKPAYSVRMKDIVKESGLSQGGVYKYYSNIDEIVIALINSNKTEVNPRDIIENYYDEPEKAIFELFDAFRKFFFITAKEFGKIMFELQAMFFNSKERMQKLKDNINKDLVLNYWFSELLIFIDKKIDEKYFNPVIDPQDIYMQMIVAASGIGNELILNKYYNLDRKLYYYKGDEENIYHGEAGRTLDVNLDNLIDTLYKTLLLLLGSKNIHKYSFKN
>CP019600.1|AUJ50389.1|2254871_2255636_+|ankyrin-repeat-containing-protein
MKSIKISKSVLLVSLLSIILIVSCGKKEEPSVSISNNSVYVSDPNNIYHKTYTNVVKVQGKYVSMNAAFSYGNRKEGEYSEEYDIFEAIQNHSLKRVQELIEEEGEDIDQTYFGDSLYSEFMDDSYAIDGGTPLIFAVFYRDLGIMKYLLDKGADPYIKDDDSWNAFLWACGTGNVDVIKMLVQSDSYLVNSKNMYDANGLHMAALNDNVEVFEYLVNDLGININSTDEDGDGVLYYANEDAALEKLRELGAEE
>CP019600.1|AUJ50390.1|2255875_2256625_+|ankyrin-repeat-containing-protein
MKKFLFISFVLMITFIISCGKKEEASVSISNNSVYVSDPNNIYHKTYTNVVKVQGKYVSMNAAFSYGNRKEGEYSEDYDIFEAIQNHSLKRVQELVEEEGEDIDQTYLGDSLYSEFMDDSYAINGATPLIFAIFYRDLGIMKYLLDKGADPYIKDDDGWNSFLWACGTGNVNVIKMLVEFDSDLVDSKNIYQGNGLHVAAMYDNVEVFEYLVNDLGIDINSTDEDGDGVLYYAEKDEAIEKLRELGAEE
>CP019600.1|AUJ50391.1|2256858_2257569_+|ankyrin-repeat-containing-protein
MKKLLLISFVLMFTLLISCGKKEEDIISNANNLDNKIDTNVVKVKGKYVNMNSDFSYGNREEGEYSKDYDIFEAIENHSLKRVIELIEEGEDINQTYSGGKKYSELLNNDYYLDGATPLMFAVFYRDLGIMKYLLDKGADPNIIQDEYGRNVFLLACGFGNVDVIKMIVDFDSDLVDSVSSRDENGLDMAYLYGNIEVFEYLVNTLGLTTDILDNVDEEDPYENTEDIKKLRELLN
>CP019600.1|AUJ50392.1|2257958_2258867_-|radical-SAM-protein
MLKYREINCKSALNKIDNEYGFCYDLNIYRGCLHKCYYCFAVYSHKYINSKDFFGEIFVKKNIAEVLEKELSSRNWNRDIINLGSVTDNYQEAEKDYKLMRDVLKLLIRYKTPMCISTKSNLILRDFDLIDELSSIVPVRIASTITTLDEKLSSLIEPNVISPEKRFNMLREFKKTKAIVAVHAMPIMPFITEDSIEDIFKKVKEYEIDYCAADALKLRGECRKIYLNFVRQVFPEHYKKYLYIYDSDGILKDEYREKLYKKIKSLEEKYNITYKTKEELNTEDSVYNRYNNKVIEEAPTLF
>CP019600.1|AUJ50393.1|2259073_2260252_+|RNA-splicing-ligase-RtcB
MIELKGKYNKDCKIFTDNIDEESYSVLYKILNEKASEDVKIRIMPDTHLGKGIVVGFTMPLTDRVNPFHIGVDIGCGMLTSKLSDEIKDIPLEKIDKTIKQNIPMGIKIHKKSFNTLFNFKELNELIRNFILNYNKKFNTKFEVFEIDNEYIEKLCQRVEIDLEKFHNSIGTLGGGNHFIEIGKSSNNDYYITIHSGSRNFGNQVCRYHAKIAKNSEDCYLHDKEMFDYLIDMVIAQYYAKINRDTILKIIKDLLNIEIENSFSSVHNFIDFEDFIIRKGAIRSYENEKMIIPFNMRDGILICEGKSNEDWNCSAPHGAGRVLSRAQAKNQLNMSEFIDSMKGIYSSSICKNTLDESPMAYKNPNEIEKLIEPTVNIIDKIKPVLNIKSTSK
>CP019600.1|AUJ50394.1|2260534_2262694_+|PTS-glucose-transporter-subunit-IIA
MKDKIFGVLQRVGRSFMLPIAVLPVAGLFLGIGSSLTNTTMLETYNLIGILGPGTIAYDILSVLSEAGNIIFGNLPIIFAMSVAIGMAKKEKEVAALSGAIAFFVMHASIGKMITVMGGADKLLAGSTTNVVGILSLQMGVFGGIIVGLGVAALHNKYYTIELPQVLSFFGGTRFVPIISSIVFLVVGILMYYVWPPVQVVMNKLGDLIAGSGYIGTLFYGIIERALIPFGLHHVFYTPLWQTSLGGTMMIDGNLVEGAQNIFFAQLGSPTTTAFSVEATRFMTGKFPFMIFGLPGAALAMYRTSRPEKRQVVGALLFSAALTAMLTGITEPIEFTFIFVAPIFYAIHCVLAGISFMLMHILHVTVGMTFSGGFIDLLLFGIIQGNAKTNWIWIVVVGAAYFFIYYFLFSTLIKKFDWKTPGREPDSEEPKLYRRADVAAAKAAASGESVDTNPLFQYEEAPLITAGLGGKKNISDVDCCATRLRITVFDPSKVVDATLKASGAAGIIKKGNGIQVIYGPKVTVIKSRLEDYLHDPISDQEVQAPADTPKAEEKKEEKKEAVKTSSSSAAYKVYAPIKGNIIKLESVKDEAFSSGAMGKGIAIEPKEGKVYAPYDGVIETAFPTKHAIGLTSDDGVELLIHVGMDTVKLGGAHFISHIEEGQKVKKGDLLLEFDVEKIREEGYPTLTPVIVTNSDDYTDVITINAASVNVGDDLIEVKK
>CP019600.1|AUJ50395.1|2262851_2264657_+|chemotaxis-protein
MENKKKKYVLMLKFLIPFAIFIIIVVIGLMLYFIPRYKKEFLLEIESNIYKKESSVSSWLSYFYSEIDVLSSYCKYETDYNQMLDSFKELEKIKDEISNIHFSGTVGYKYGGLLVIVYGDNIEGFDQTTREWYIEAVKNPSSIYLSTPYQDAETKETVITISKAIFENNQLKGVVGLDISFSKISKVLTADKDNKFFIALDDGRFITHTDSNLLFNDQRNIYTELNAPKLNGEIYNVILGKKEWTAVYTIPNTPLLLVGNGSSVSLANKTLTLSIIMVIVAIGFLVIQFMLVLLNVNPLSQTLDRAIEVIKNMTNKHFNAVFDERLLNKSDQTGVLVNSIKDMQKSLGDSIHFFQESLNFINHEIDAVSDGTVNLADRSNTQASSLEELSSLIESLSTSLDETNVHSEDARNMSAKVADATKVGVESSSEITSSMNEILESSKKISDMTKLIQSIAFQTNILALNAAVEAARAGEQGKGFAVVASEIRSLAQNVDETAKNITTTINDALTKVEIGNKAVENSSKILSEIETLAQDMLNKLTSISERAVIEADSINQINVSVRQLNSITSENSTLAESNANSTKEVREKIENMVDRISSFKF
>CP019600.1|AUJ50396.1|2264711_2265251_-|N-acetyltransferase
MKKILETDRLILRELEYNKFDYAGLSSILQDKETMYAYEHAFSDDEVNQWFNNQINRYKTYGFGLWACILKENNEFIGQCGLTLQKVDKKIYDSYELLEIGYLFNKNYWHKGFATEAAIACKNYAFNVLKEKRVYSIIRDNNKSSQKVAIRNGMKIIDNIVKHYYNIDMPHYIFCAENI
>CP019600.1|AUJ50397.1|2265940_2266309_+|membrane-protein
MKAITTIVLLILSNTFMTIAWYGHLKFSEMKGFAKLSLPLIILISWGIALFEYCFQVPANRIGFQGNGGPFSLMQLKVMQEVITLTIFTIFTVVFFKTETLRINHFIGFLCLILAVFFIFKK
>CP019600.1|AUJ50398.1|2266397_2267873_-|peptidylprolyl-isomerase
MSSNKKFVPKKKSPVIKTLQWLGVSAVSILLIIYFLVVDTRGSQKTPTIGSVNGKPIYYTSTSPYGRAFRQIEGYYQQLGIQINNEMYTYIEDLAFRRAVSTMLLNDVARKNINVSDNFVVEAMKSQFIDTNGVYNQMAYESFIKNSSQSEKVKIEKDLKEDILSQTVSAELFTSVKLNDLEMQREYKKNLTKRDIEMVYINASEIVQSNQVADADLEKYFTDNKTNFAQADISWIITQSGGVADNLYKSLKADISLFEKTAMEKSFDTNNYKLGYLTRMQMPNEDFANKIFANNNNTKGSNLLQPIYANGYYYIVLVNDIRIPEKYTDVNKEVLRREYLNANMNTLLEAEKTKQAEVLKAAVANVNNLARLNGNGLIKYYKPAQPFSYNQGRLNTAEGAIIPDSTTESFYMHVFSMQTNQVSDVIKLDNGVAVIRLVSEEKPNMATLTTLDAATKNAVKRELSMQRMNLIQIEWENQHIADARVKKHNLR

Crispr_ID: CP019600_8

• CRISPR_ID: CP019600_8
• CRISPR_location: 2681510-2681609
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP019600_8

Consensus_repeat	Method
TTAATAAAAATATATCATTATAA	CRISPRCasFinder

spacers of CP019600_8

>8.1|2681533|54|CP019600|CRISPRCasFinder
TATATCATTATAATATATAAATATACTATATTTTATAACAAAAAAGATTAAAAG

CRISPR arrays and Neighbor proteins around CP019600_8

CRISPR arrays

The CRISPR arrays of CP019600_8

>merge|CP019600|8|2681510-2681609|CRISPRCasFinder
ATAATAGAAATAATTAATAAAAATATATCATTATAATATATAAATATACTATATTTTATAACAAAAAAGATTAAAAGTTAATAAAAATATATCATTTTAA

>CP019600|8|7|2681510-2681609|CRISPRCasFinder
ATAATAGAAATAATTAATAAAAA	TATATCATTATAATATATAAATATACTATATTTTATAACAAAAAAGATTAAAAG
TTAATAAAAATATATCATTTTAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP019600.1|AUJ50758.1|2672289_2675052_+|DNA-polymerase-I	unknown	unknown	gnl|CDD|235591
CP019600.1|AUJ50765.1|2685117_2686236_+|AI-2E-family-transporter	unknown	unknown	gnl|CDD|223701
CP019600.1|AUJ50766.1|2686265_2687255_+|ADP-heptose--LPS-heptosyltransferase	unknown	unknown	gnl|CDD|223928
CP019600.1|AUJ50772.1|2690902_2691106_-|hypothetical-protein	unknown	unknown	unknown
CP019600.1|AUJ50774.1|2693236_2693842_+|rhodanese	unknown	unknown	gnl|CDD|238089
CP019600.1|AUJ50768.1|2688092_2689334_+|hypothetical-protein	unknown	unknown	gnl|CDD|380172
CP019600.1|AUJ50755.1|2669923_2670307_+|flagellar-rod-assembly-protein-FlgJ	unknown	unknown	gnl|CDD|378407
CP019600.1|AUJ50769.1|2689344_2689890_+|DNA-integration/recombination/inversion-protein	unknown	unknown	gnl|CDD|376894
CP019600.1|AUJ50767.1|2687314_2687965_+|type-A-chloramphenicol-O-acetyltransferase	unknown	unknown	gnl|CDD|366012
CP019600.1|AUJ50773.1|2691360_2693049_+|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl|CDD|163244
CP019600.1|AUJ50761.1|2677269_2679420_-|DNA-topoisomerase-I	unknown	unknown	gnl|CDD|235516
CP019600.1|AUJ50756.1|2670343_2670793_+|hypothetical-protein	unknown	unknown	gnl|CDD|378499
CP019600.1|AUJ50754.1|2666916_2669811_+|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl|CDD|214599
CP019600.1|AUJ50762.1|2679462_2680737_-|DNA-processing-protein-DprA	unknown	unknown	gnl|CDD|376794
CP019600.1|AUJ50757.1|2670893_2672234_+|TonB-dependent-receptor	unknown	unknown	gnl|CDD|366183
CP019600.1|AUJ50763.1|2680733_2681447_-|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|276809
CP019600.1|AUJ50770.1|2689899_2690262_-|transcriptional-regulator	unknown	unknown	gnl|CDD|238045
CP019600.1|AUJ50760.1|2676376_2677324_-|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl|CDD|119407
CP019600.1|AUJ50771.1|2690465_2690654_-|putative-motility-protein	unknown	unknown	gnl|CDD|379452
CP019600.1|AUJ50759.1|2675727_2676204_+|dephospho-CoA-kinase/protein-folding-accessory-domain-containing-protein	unknown	unknown	gnl|CDD|377252

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP019600.1|AUJ50758.1|2672289_2675052_+|DNA-polymerase-I	gnl|CDD|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
CP019600.1|AUJ50765.1|2685117_2686236_+|AI-2E-family-transporter	gnl|CDD|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	4.99812e-32
CP019600.1|AUJ50766.1|2686265_2687255_+|ADP-heptose--LPS-heptosyltransferase	gnl|CDD|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	1.84867e-48
CP019600.1|AUJ50774.1|2693236_2693842_+|rhodanese	gnl|CDD|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.65852e-19
CP019600.1|AUJ50768.1|2688092_2689334_+|hypothetical-protein	gnl|CDD|380172	NF033164, lipo_LipL46, lipoprotein LipL46. Members of this family are lipoprotein LipL46, as described in Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 but found broadly in the genus Leptospira. Close homologs that are not lipoproteins by sequence are likely defective in their reported coding region.	3.79451e-12
CP019600.1|AUJ50755.1|2669923_2670307_+|flagellar-rod-assembly-protein-FlgJ	gnl|CDD|378407	pfam10135, Rod-binding, Rod binding protein. Members of this family are involved in the assembly of the prokaryotic flagellar rod.	1.6778e-13
CP019600.1|AUJ50769.1|2689344_2689890_+|DNA-integration/recombination/inversion-protein	gnl|CDD|376894	pfam02677, DUF208, Uncharacterized BCR, COG1636.	6.18932e-78
CP019600.1|AUJ50767.1|2687314_2687965_+|type-A-chloramphenicol-O-acetyltransferase	gnl|CDD|366012	pfam00302, CAT, Chloramphenicol acetyltransferase.	5.33422e-86
CP019600.1|AUJ50773.1|2691360_2693049_+|pyridine-nucleotide-disulfide-oxidoreductase	gnl|CDD|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	2.43501e-128
CP019600.1|AUJ50761.1|2677269_2679420_-|DNA-topoisomerase-I	gnl|CDD|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0
CP019600.1|AUJ50756.1|2670343_2670793_+|hypothetical-protein	gnl|CDD|378499	pfam10825, DUF2752, Protein of unknown function (DUF2752). This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.	2.40026e-15
CP019600.1|AUJ50754.1|2666916_2669811_+|methyl-accepting-chemotaxis-protein	gnl|CDD|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.09558e-32
CP019600.1|AUJ50762.1|2679462_2680737_-|DNA-processing-protein-DprA	gnl|CDD|376794	pfam02481, DNA_processg_A, DNA recombination-mediator protein A. The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In H. pylori, dprA is required for natural chromosomal and plasmid transformation. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyze the homology-dependent formation of joint molecules. While the E.coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation.	9.7075e-93
CP019600.1|AUJ50757.1|2670893_2672234_+|TonB-dependent-receptor	gnl|CDD|366183	pfam00593, TonB_dep_Rec, TonB dependent receptor. This model now only covers the conserved part of the barrel structure.	7.79328e-11
CP019600.1|AUJ50763.1|2680733_2681447_-|tetratricopeptide-repeat-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.89607e-09
CP019600.1|AUJ50770.1|2689899_2690262_-|transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.91774e-12
CP019600.1|AUJ50760.1|2676376_2677324_-|N-acetylmuramoyl-L-alanine-amidase	gnl|CDD|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	5.01914e-58
CP019600.1|AUJ50771.1|2690465_2690654_-|putative-motility-protein	gnl|CDD|379452	pfam14070, YjfB_motility, Putative motility protein. This family of proteins is regulated in B. subtilis by SigD, and is likely to be involved in motility or flagellin production, Proteins in this family are approximately 60 amino acids in length, and contain two highly conserved asparagine residues.	0.00640947
CP019600.1|AUJ50759.1|2675727_2676204_+|dephospho-CoA-kinase/protein-folding-accessory-domain-containing-protein	gnl|CDD|377252	pfam04229, GrpB, GrpB protein. This family has been suggested to belong to the nucleotidyltransferase superfamily. It occurs at the C-terminus of dephospho-CoA kinase (CoaE) in a number of cases, where it plays a role in the proper folding of the enzyme.	7.12408e-58

Protein sequences

>CP019600.1|AUJ50763.1|2680733_2681447_-|tetratricopeptide-repeat-protein
MKVILKYFTLIICFLSIISCDKQVIFNRFNLNRAYNLYEKGKNADDDKALLEITSTYNDIINQKIYAQDRLASVYRTLGERSLVKQQYGYSAKYFTEALKILPNSPYLRYGLGLSYANLAESADTQEKKSNFIQRAESNITFAISKDPNNANYYAALASLQGIQKENYEEAFENIKKAVEMSPDNADYLMLLARIQYSRGNYNEAVASYRKILNLPVENNVKETVLKNIEQIIGQRN
>CP019600.1|AUJ50762.1|2679462_2680737_-|DNA-processing-protein-DprA
MSRTYDIKTYLIALNQIDKVGDKRISELINHYESVENIFDDKEENIKELLEKKFKSQIGNFDKNEILDKANTIVEKSNNYGIGILSLFDEDYPFNLKQIDNPPYILYYKGDLKKLRRNAIAIVGTREPTNESRKYSFELASKLSSLNISVVSGMAKGVDREAHLGAISSHINTVAVLGNGIDNVYPSENLQIYNKLSEKGLIVSEFEIGRKPDRMNFPRRNRIISGLSYAVVMVEAASKSGALITVDYALNQGRDVYIAPYDEKKSCYFGNHKLYKDGAKIAYNYMDILEDFDSIFSNDDDYVKMKLKYFEGGDIKSKAVKNDSIKSENNNSKEKKEIKKEEVKDKKEKKKNKISKQNDESIISALQEDEALLYNIIKQNDKIHIDEVIEESKMKVQAVTSMLMQLEIKGIIKQLSGKYYTIEK
>CP019600.1|AUJ50761.1|2677269_2679420_-|DNA-topoisomerase-I
MATTTEEKVKKTASKKTKDKKESKKKKLVIVESPAKAKTINRYLGSDYLVMSSMGHLIDLPRSRLAIDVDHGFEPEYITIRGRAKILNELKKEAKKAEEVLLAADDDREGESIAWHIGNKIRGVNSAVPIKRIVFHEITKDALKEAIDQPRDIDISKVNAQKARRVLDRLIGYNLSPLLWDKIKRGLSAGRVQNVALLIICNREDEIETFVPVEYWTFGVFLKHKNKEFLAELQKYKGEKPDLKTKQDVEDIMEHLKDKTYTVASIEVKDRLRNPTAPYTTSKLQQAASSALGYSASKTMQVAQSLYEGVDIAGEATGLITYMRTDSVRISPVAQEQAKEFIEKEYGSNYLPPEPPTYSVKKNAQDAHEAIRPTNVFLTPDSIKEYLKTDQYKLYKLIWERFVSSQMLPAKMKNTRAIIVAGDCEFSLSSSKIEFDGFMKVLTIDKEDKEKASKMPNLSKDDVCEFVENNPQQHFTTPPPRYTDASLVKILEESGIGRPSTYAPTIKTIISRHYVQRKGKQLVPTELGKLVNELISENFPELVNINFTADMESKLDKIEDDNIEWNNILKEFYPHFLDTLKTATENINNMKDFFNEETDFVCEKCGKKMIKRLGRYGYFIACSGFPECKNTKGISFGVCPKCGGDITLKRSKRGREFYGCSNYPKCDFVSWDKPLQEPCPKCGGLMVEKNIKNKGLFKVCIKEDCGYSEEIKEDEE
>CP019600.1|AUJ50760.1|2676376_2677324_-|N-acetylmuramoyl-L-alanine-amidase
MYQGRLRLFGGNQRGRRITLILIIVLTLLNTCYLLYPQNNDKIKLNNLNIKVEDLKEAFNPAVSKFSEKTISTIIIDPGHGGKDPGAVGVNKLFEKDIVLAFSLELKEELEEILPDVKIVLTRTGDTYPTLEKRFEIANDAAKINTDKAKNALFVSVHANASFSPSARGFEAYFVSAQESSEYARAVSMFENEALVKFDNIDTSKYEKDSSQITHNSMLIEQYQKESKLLAESITEEVLKVSGVARRTKPVQNALFYVLKGAVMPSTLIELGFITNPDDAKFMNTKETRLKMVKATAEGIKKYIEVFEKTKGFTK
>CP019600.1|AUJ50759.1|2675727_2676204_+|dephospho-CoA-kinase/protein-folding-accessory-domain-containing-protein
MRIIEIVDYDPNWKNLYKEEEVKIKNILNDILISIHHIGSTSIENLKAKPIIDILAVVDDINKVDHYNNDFANIGYKAMGENGIAKRRFFMKDYIDNNGTQKRFSHIHIFDINNKFDIERHLAFRDFLRANKNIAEEYVKIKLEALKNCNNDIELYCN
>CP019600.1|AUJ50758.1|2672289_2675052_+|DNA-polymerase-I
MKKTFLIIDAFGILYRYHFIFLKRPLLNSKGQNVSSINGFMRTYFSLINTYPAEYVAIALDSSRKTFRNEIYKEYKENRESMPDDLRSQIPILYNLIDALGISRIVLDNYEADDIVGTIAERNKKENIKTIIYSPDKDILQLVDDDVKVVASNKDNELMEYDAQAVKEKRGVYPNQIIDLLSLMGDASDNIPGVKGVGEKTALKLLEEYKSLDGIYENIDSIKGKIQEKLLESKDMAYMSYKLATIERNIEGFNLDYNEIASSKINIDEVNKILDELELKQIRDKINSYIYGSSKKEDKVKISNDKINKDNDSKTEEAPILSAKDNKSSYYLIENETELENLLKDINSKKLVCIDFETTGLDTFKDTIIGISFAIKSNEAFYLDLSGRTKIDKDKCMNLVFDTLEKEDIKVIGHNLKYEYKMMRAIGKSIGNMYFDTMVAAYLINPTRGRYNMDDLAIAYLSYNTIKYSDLTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFAPLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYAEAGEEFNLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYAKLKNTYLDVFPTLINEKTGRIHASFNQTVTATGRLSSSEPNLQNIPVRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDDIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGYFSTYSRVKPFCEEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEKEADKAMTIMKEIMEHSVKANVPITVDIHKGNSWGEVH
>CP019600.1|AUJ50757.1|2670893_2672234_+|TonB-dependent-receptor
MTALLMILLYIFLSFPIYAEDEIPFDYEAIQEETNEIQASHKEKQFLLDRSIYIRKSQIKSSKSRNMAELIKEYSNIDIKNKTVYSQSTFILNGKVLNNDEKKVYLFLYDKNNIDSININYYASRGRIVYDILSKKYSKSEELLYTKLSRDIKLEADQTIKYVKTQTNESKSSGKMNLLEYNLKNQNNSSLNFNLDTSGEERGFSSRKSKTADFRSYVNGNVNFKLNPVKQVSLTGKYFVNMQTDIAMLNKGYTNNIKNQNLYQGGNIGISLKPHDIVTLEALYFISSKKDLITNNNQYLTTQGSKTSIIFNIPIKDISSTIRIKGNYSYLVGKNLYNVSVNNNDLPGLPKHQFNTSLEYIYSRNSDFESSILLNVQYIGNQYNNTTKTDLDKAYTTFDIISSFVFKKYTSLKFGVKNILDVKYETIKGYPISSREYFVNVTSKFK
>CP019600.1|AUJ50756.1|2670343_2670793_+|hypothetical-protein
MIKILKLLLISFAAFFIIYDGNKHFDKYYIPIDRLCMIRNVTGFPCPGCGMTRAHIEVLKLNFKRAFYYHPLFIFPSIIFFIIIFKKKFKIANYIYNNNYIIMAMLLIFIVVYIVRFVLLFPNEEPFTYNYDSEFYKTFKIIKDILKQL
>CP019600.1|AUJ50755.1|2669923_2670307_+|flagellar-rod-assembly-protein-FlgJ
MNITDKYNLSMGSANLTKLENAKKQYGNAKFSIDETTTENVNKAISKYDKDFEKKRLRQVSEDFEALMINQMLKEMRKTVNKTGLIDGGMAEQIFEDMLYDEYAKEFSKTKTFGLADIIYNQMEKYV
>CP019600.1|AUJ50754.1|2666916_2669811_+|methyl-accepting-chemotaxis-protein
MSLKNKVLLLVIIVVILALSPTIFINTRTNREALYNSAMNISQNYFYDVSSTFDNIFTSTTVGTVSLSDIATVSYDLYSTGSVTDVATNLRKIIYRFHKSQLGLHHVIANGIYFEPDIIENNPYMRGLYSLYLYDIGNTGNMQPKIESASDNYNQEEFYYLALPENWNREAKRPRTVYYSSPYLKNIDKPQKVISFSSPIYSSINDNLIGVSLSDVSLEIVHEMFTNIVKTGPFNTVIFDSRNKKIVYHDNPNYILSDLKDIEWINNAIDNTTFYTNTRIRENYRVGDNTYTLFFKQFDNGFYNIFMYVPTSFFYNVLVTTNNTIFIILIFAIIVIIVVLNITIPILLKPLDKISQELESGVFDNNIFVNVSKINSKDSLGDLSTWIRIFFDMVQHVFSSVSKTLKVSKEQSNALKVKMVDISEAAGSMTESVSMIIDNISSQQTEFKHVETSNLEIYKIIASSLAELISIDDMTNNLQSKIDDQSVSINQINSLTMTMQKDMQEVSLSVGKAKEESEHVVSLAEDSKEKIVKTENITKSLITSIRGITDFVNSTIDISQQTNMLAMNAAIEAAHAGEQGKGFAVVAEEIRKLATTTNLQSEKAWKILRDIEKEMNQIMSSMTERIITTEDMLVKLQNFVNTMTKVKKVADEKYDSTKEISVSIESLYNAVKEIKEQYTNLHGRISVAKDDLVNLSDFSKKNDEAMKLVSENSDDIVSKTQDMGNQIGNVFGLIKEIEQLSNVASDSVDMLEKEMSNYVIKDFEDVIKEKIKIINEGDRAYSRHAFVQSIYKFVVATFGKEKFQALLDQMPEECKKIFRDVKKTKFRKKYPLSTSCFIPMTSIMDEFYDGAREGIREKARYDFKKFHFTTKLFIKVAKKNALADVFVNFTKKMFKNIHVEVVKAEKKRIIYHLHYFPNYDSMIETYYDEMIKNIFRFKYPNGSKVKMTKSISKGYIYTEYIVTW
>CP019600.1|AUJ50765.1|2685117_2686236_+|AI-2E-family-transporter
MNKNNIGYIFFIAFIFLSIFIMYKLLRPFGMIIFFAVVFYVILNPLFIKAMGKSYKKTDKLSIIKKNTLALLFSLISLIIFLVPTSILAYTIIVQLIDISNIGIKYFMNLDVNEVINNSNINNFLKSLPIDVSMETILKRIQDSSLSNLTFISSYLTQNVAGLLKSTGGFVSSFIFMMFSLFFFFVDGEYLIGQVRTLVPIDAKYLDRLIKQVSEGIKGIVFGNLFTGIFQGFCAFIVYTVFGVTNSFTFAFLTIIASFMPIIGTTIIWIPLGILFLINGEIIRAIIFIVCSWFFITIPDNFVRPLLLGNRIELHPLFIFFAILGGVLFFGLSGIILGPLSFILFFEIMKIYNEERLLEAKKERIAKKRRLS
>CP019600.1|AUJ50766.1|2686265_2687255_+|ADP-heptose--LPS-heptosyltransferase
MTKILIIGMNYIGDTIFITPLIRAVKKHYNDSTIDVVNGARGIDILKENPYINNIIVRDDKVSEYIKNQNYDIGITATTAFYGASLLYKAKIPIRAGVNSECRGFLLNKKTSWKKHKRHIVDTILSILKPMNIETDGINTEIFLSEEENNFGIDKMKNYKNALLVHGGATRISKRYGIDNFSKLIDMFYKEKQVPIILIGSKDDLDFSEEMKKRLGNIIADDFTNKLSIRELISVIKHSYALIGGDSAPLHIANASNIYSIGIFGDTLPLIYGARGDKAINIEARKKYCTALKSFHCEYMKRGCKTIDCLKKLDPEEIMPSLLSVYKEI
>CP019600.1|AUJ50767.1|2687314_2687965_+|type-A-chloramphenicol-O-acetyltransferase
MFNKIDLNNYNRKEHYEMYMNNIPCTYSITVPLNITKFKKTVKDKNIKFYASVIYLISKVVNKYKEFKMALNDNKELGYYDIINPSYTIFHNDTKTFSSIYTEYNEKFDLFYKNYISDIETYGENKTFLAKPCSINNIFNISSLPLSAFTSFNLNLPNSFEYLAPIFTIGKYYTDDKNNIMMPLCLQIHHSVCDGYHVGIFFEDLQMEFNEFNLLY
>CP019600.1|AUJ50768.1|2688092_2689334_+|hypothetical-protein
MKFILNKLYLFIFLSLFFISCATTSKSTSSGGVYVGEDTGEIGIVNNWKNPDFKGGKTTKIIAEGYASADGRGEADAIERSIESAKRNAVEQAVGSIVNGSTLVENNRLISSKIYDNTTGYISAYKVINISKSGSVWYSKIEATVGVDMLQDNLQAMGILMDRKNLPLIVVLVTDETGNLSESFNVELEKNMSEKGFKFVSPSSLQNVMRKENISYEDTRGSRSSASIKKIADATGAQIAIIGKADAAFFTTIQGTAMKSYRSDVAITAINISDYTTIARATHQAGGVGGSDKDAHSIALVKSADYVSDDFVNQIVNKWQSEVQNGTEYTIYVSGLDFNESIGFEEALKKNIGGLKNIYNRGVSGESSRYVVTYVGSSRDLAVDINSKAKSMGYQVIISSFDDKTITLKASKR
>CP019600.1|AUJ50769.1|2689344_2689890_+|DNA-integration/recombination/inversion-protein
MEIKEKLVVHTCCAVCMSYPRTILEDYDTVFYFYNPNIYPIEEYKRRRDEFINYTNNLGIKTYISEEDDDVAKWYNDIKGFENEPEKGARCSICFKHRMKKAFEYAKSINAKYVATVMTVSPHKNSKVIEMIGKSLAENYEGIEYLHFDFKKKDGFKKTNIIANEAGLYRQNYCGCEFSIR
>CP019600.1|AUJ50770.1|2689899_2690262_-|transcriptional-regulator
MMDTEVVLKNLGQNIRELRKNKKMTIDELAEKSSLSGKYLQGVEVGNRNISIKNLNKICKALETSPDTLLNMKPYNLKSSEEKIFAISEKLKKFEENKLDFIGNMIDHLNNIIKNEEKNE
>CP019600.1|AUJ50771.1|2690465_2690654_-|putative-motility-protein
MDLSAYSSYSTGMLKQDISLSMIRKTSDMQAQAVDKIMTSIQPQAVSAPMRPGVGERLSTYA
>CP019600.1|AUJ50772.1|2690902_2691106_-|hypothetical-protein
MGVSLNSIYSSDMFPLTRHMTSAGLNVYNSSAYGSAQSADKVASIVTPQGSSAPINNNIGKTLDVYA
>CP019600.1|AUJ50773.1|2691360_2693049_+|pyridine-nucleotide-disulfide-oxidoreductase
MKKILIVGGVAGGASAAARLRRLNEEDKIIMFEKGPHVSFSNCSLPYHIGGLIPNEETLLLMNPEKFLKQFNVDARVNSEVVAIDRKNKEVTVVSEGREYKESYDKLILSMGAKPIVPPIKGIEKVNVFTVRNVVDISKIHNFLKGKSNAKVSVIGGGFIGIEMAENLKKVGYDVTIVEALPQIMKPFDYDMVQILHREIMDNGVNLIVNDKVDSFDTNTVILGSGKKIEADAVILAIGVSPETDIAAKAGIELGKTKGIKVDSTYRTNDKDIYAVGDAIEVYSPLFNDYYRLPLAGPAQKQARAVADHINGRTVDNRGFISSSVIKVFGYNGASTGLSEGFIKAMNLNIDYDTVEIIPFDGVSIMPTARLMHFKLIYEVPTGKVLGAQAIGKGNVDKRIDVIATIIKFGGTIDDLKDLELCYAPSFGTAKDVVNFAGYVASNLRNGDYKQVHYSQVRELVEKDAYFLDVRMPEDFAVGHLEKAVNIPLGALRSRYNEIPKDRTVYITCKTGLTSYTACKILQNIGFNNVVNVSGGFIGLSQYEYFNDKTTGRKPILTGYFG
>CP019600.1|AUJ50774.1|2693236_2693842_+|rhodanese
MLIENDLKILSPSEAGEIISNTDNIVILDVRTEMEHNYEGMIEDSISMDFLKPRVFKREISKLDKETPYLLYCSIGKLSIKAAEYMKEEGFKNLYILEGGLKAWNKHFGDNNKVSKFDREEAVERRKRLIIRLNRIEGQIKGMKKMLAKGEYCGDILNQSLAVKAAMGSVNQEIMEVFLNTCMISPKEKEDFFRYMRKLIK

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1067753-1067776	2	0.917
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	MN694092	Marine virus AFVG_250M12, complete genome	35642-35665	2	0.917
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NC_048682	Raoultella phage Ro1, complete genome	49049-49072	2	0.917
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	MT178275	Klebsiella virus KpS8, complete genome	92948-92971	2	0.917
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NC_048647	UNVERIFIED: Klebsiella phage KNP2 genomic sequence	84347-84370	2	0.917
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	MT939253	Klebsiella phage vB_KpnM_Seu621, complete genome	92912-92935	2	0.917
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	MK024806	Proteus phage Mydo, complete genome	60151-60174	2	0.917
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	KX452695	UNVERIFIED: Klebsiella phage KPN2 genomic sequence	84347-84370	2	0.917
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NC_048656	Klebsiella phage vB_KpnM_BIS47, complete genome	79216-79239	2	0.917
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NC_028659	Klebsiella phage vB_KpnM_KB57, complete genome	93185-93208	2	0.917
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1611166-1611189	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1026531-1026554	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	916119-916142	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	916161-916184	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	941759-941782	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP016009	Escherichia coli strain NGF1 plasmid pNGF1_pCol_let_like, complete sequence	4268-4291	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1100776-1100799	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	777128-777151	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	1019755-1019778	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	7507-7530	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	1108527-1108550	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NC_002487	Escherichia coli plasmid pCol-let, complete sequence	2202-2225	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	823381-823404	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1032164-1032187	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	934214-934237	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	915216-915239	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	915258-915281	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	920694-920717	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	920730-920753	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	920684-920707	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	920720-920743	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1028865-1028888	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	1140230-1140253	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	916111-916134	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	916153-916176	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	916129-916152	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	916183-916206	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	916102-916125	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	916144-916167	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	960522-960545	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	1108516-1108539	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	1140197-1140220	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	1139020-1139043	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	992306-992329	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	1139033-1139056	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	992329-992352	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	1139033-1139056	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	935475-935498	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	1139022-1139045	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052125	Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence	992329-992352	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	1031318-1031341	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	1011992-1012015	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	1059939-1059962	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	1106095-1106118	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	1139022-1139045	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052123	Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence	992329-992352	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	1140196-1140219	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052081	Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence	992329-992352	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052083	Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence	992329-992352	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	1139033-1139056	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	1139044-1139067	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	1139022-1139045	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	NZ_CP019193	Salmonella enterica subsp. enterica serovar Rubislaw str. ATCC 10717 plasmid pATCC10717, complete sequence	95075-95098	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	MN694424	Marine virus AFVG_250M468, complete genome	20247-20270	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	MN693528	Marine virus AFVG_25M160, complete genome	6188-6211	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	MN693259	Marine virus AFVG_25M161, complete genome	6178-6201	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	MN693217	Marine virus AFVG_25M350, complete genome	27839-27862	3	0.875
CP019600_3	3.4|1173954|24|CP019600|CRISPRCasFinder	1173954-1173977	24	MN694307	Marine virus AFVG_250M453, complete genome	33729-33752	3	0.875
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NZ_CP011351	Bacillus thuringiensis strain YC-10 plasmid pYC3, complete sequence	72740-72767	4	0.857
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NZ_CP004874	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB74, complete sequence	60338-60365	4	0.857
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NZ_CP015154	Bacillus thuringiensis strain Bc601 plasmid pBTBC4, complete sequence	12672-12699	4	0.857
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NZ_CP013059	Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-4, complete sequence	16082-16109	4	0.857
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NZ_MG710485	Bacillus thuringiensis serovar israelensis strain Bti-UFT6.51 plasmid pBtiUFT6.51.1 complete sequence	60248-60275	4	0.857
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	206494-206521	5	0.821
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NZ_CP045536	Bacillaceae bacterium C02 plasmid unnamed3, complete sequence	4151-4178	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	CP045772	Bacillus paranthracis strain CFSAN068816 plasmid p5CFSAN068816, complete sequence	1741-1768	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_018494	Bacillus cereus FRI-35 plasmid p04, complete sequence	264-291	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NZ_CP033791	Bacillus sp. FDAARGOS_527 plasmid unnamed4, complete sequence	5134-5161	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	AP013754	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C20-MedDCM-OCT-S24-C67, *** SEQUENCING IN PROGRESS ***	9386-9413	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_019005	Borrelia burgdorferi 297 plasmid 297_cp32-6, complete sequence	14729-14756	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NZ_CP016363	Bacillus cereus strain M13 plasmid pBCM1303, complete sequence	2736-2763	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_018979	Borrelia burgdorferi 297 plasmid 297_cp32-12, complete sequence	14678-14705	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_018980	Borrelia burgdorferi 297 plasmid 297_cp32-7, complete sequence	6213-6240	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_018981	Borrelia burgdorferi 297 plasmid 297_cp32-5, complete sequence	14671-14698	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_018984	Borrelia burgdorferi 297 plasmid 297_cp32-4, complete sequence	14437-14464	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_019003	Borrelia burgdorferi 297 plasmid 297_cp32-1, complete sequence	14671-14698	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_019004	Borrelia burgdorferi 297 plasmid 297_cp32-11, complete sequence	14679-14706	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_019006	Borrelia burgdorferi 297 plasmid 297_cp32-3, complete sequence	14689-14716	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_017427	Borreliella burgdorferi JD1 plasmid JD1 cp32-3, complete sequence	14700-14727	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_017393	Borreliella burgdorferi JD1 plasmid JD1 cp32-11, complete sequence	14733-14760	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_017394	Borreliella burgdorferi JD1 plasmid JD1 cp32-1+5, complete sequence	14120-14147	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_017396	Borreliella burgdorferi JD1 plasmid JD1 cp32-12, complete sequence	14726-14753	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_017397	Borreliella burgdorferi JD1 plasmid JD1 cp32-9, complete sequence	14700-14727	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_017425	Borreliella burgdorferi JD1 plasmid JD1 cp32-6, complete sequence	14700-14727	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_017426	Borreliella burgdorferi JD1 plasmid JD1 cp32-8, complete sequence	14700-14727	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_016774	Bacillus cereus NC7401 plasmid pNC4, complete sequence	626-653	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_011776	Bacillus cereus AH820 plasmid pAH820_3, complete sequence	1052-1079	6	0.786
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NC_011657	Bacillus cereus AH187 plasmid pAH187_3, complete sequence	1052-1079	6	0.786
CP019600_3	3.2|1173855|33|CP019600|CRISPRCasFinder	1173855-1173887	33	AP014494	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C46-MedDCM-OCT-S46-C77, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces	28383-28415	7	0.788
CP019600_4	4.1|1376123|31|CP019600|PILER-CR	1376123-1376153	31	CP002510	Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence	65362-65392	7	0.774
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	78775-78802	7	0.75
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	427199-427226	7	0.75
CP019600_4	4.1|1376123|31|CP019600|PILER-CR	1376123-1376153	31	MN694288	Marine virus AFVG_250M340, complete genome	24513-24543	8	0.742
CP019600_4	4.1|1376123|31|CP019600|PILER-CR	1376123-1376153	31	MN694316	Marine virus AFVG_250M341, complete genome	16491-16521	8	0.742
CP019600_4	4.1|1376123|31|CP019600|PILER-CR	1376123-1376153	31	MN694631	Marine virus AFVG_250M342, complete genome	16149-16179	8	0.742
CP019600_4	4.2|1376195|28|CP019600|PILER-CR	1376195-1376222	28	MN693323	Marine virus AFVG_25M87, complete genome	34159-34186	8	0.714

1. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggcagaggca	Protospacer
.********** ************

2. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to MN694092 (Marine virus AFVG_250M12, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagcagaggcagaggct	Protospacer
*********** *********** 

3. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NC_048682 (Raoultella phage Ro1, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

4. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to MT178275 (Klebsiella virus KpS8, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

5. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NC_048647 (UNVERIFIED: Klebsiella phage KNP2 genomic sequence) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

6. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to MT939253 (Klebsiella phage vB_KpnM_Seu621, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

7. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to MK024806 (Proteus phage Mydo, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

8. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to KX452695 (UNVERIFIED: Klebsiella phage KPN2 genomic sequence) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

9. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

10. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NC_028659 (Klebsiella phage vB_KpnM_KB57, complete genome) position: , mismatch: 2, identity: 0.917

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgaggaagagaca	Protospacer
**************** ****.**

11. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

12. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

13. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

14. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

15. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

16. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP016009 (Escherichia coli strain NGF1 plasmid pNGF1_pCol_let_like, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgatgcaaaggcg	Protospacer
************** ***.****.

17. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

18. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

19. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

20. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

21. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

22. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NC_002487 (Escherichia coli plasmid pCol-let, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcaaaagctgatgcaaaggcg	Protospacer
************** ***.****.

23. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

24. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

25. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

26. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

27. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

28. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

29. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

30. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

31. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

32. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

33. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

34. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

35. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

36. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

37. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

38. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

39. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

40. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

41. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

42. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

43. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

44. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

45. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

46. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

47. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

48. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

49. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

50. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052125 (Ralstonia solanacearum strain FJAT1452.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

51. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

52. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

53. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

54. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

55. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

56. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052123 (Ralstonia solanacearum strain FJAT1452.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

57. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

58. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052081 (Ralstonia solanacearum strain FJAT442.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

59. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052083 (Ralstonia solanacearum strain FJAT442.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcagaagcagaggcagaggca	Protospacer
.*****.**** ************

60. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

61. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

62. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagcaaaagcagaggtagaggca	Protospacer
.********** ****.*******

63. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to NZ_CP019193 (Salmonella enterica subsp. enterica serovar Rubislaw str. ATCC 10717 plasmid pATCC10717, complete sequence) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagcgaaagctgaggcagaagcc	Protospacer
*****.**************.** 

64. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to MN694424 (Marine virus AFVG_250M468, complete genome) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagctaaagcagaggcagaggcc	Protospacer
***** ***** *********** 

65. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to MN693528 (Marine virus AFVG_25M160, complete genome) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagaaaaagctgaggcagaagca	Protospacer
.*** ***************.***

66. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to MN693259 (Marine virus AFVG_25M161, complete genome) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagaaaaagctgaggcagaagca	Protospacer
.*** ***************.***

67. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to MN693217 (Marine virus AFVG_25M350, complete genome) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
gaagaaaaagctgaggcagaagca	Protospacer
.*** ***************.***

68. spacer 3.4|1173954|24|CP019600|CRISPRCasFinder matches to MN694307 (Marine virus AFVG_250M453, complete genome) position: , mismatch: 3, identity: 0.875

aaagcaaaagctgaggcagaggca	CRISPR spacer
aaagctaaagcagaggcagaggcc	Protospacer
***** ***** *********** 

69. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NZ_CP011351 (Bacillus thuringiensis strain YC-10 plasmid pYC3, complete sequence) position: , mismatch: 4, identity: 0.857

ttatcatctttagataaagtattagaaa	CRISPR spacer
ttatcatctttagataatttattaaata	Protospacer
*****************  *****.* *

70. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NZ_CP004874 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB74, complete sequence) position: , mismatch: 4, identity: 0.857

ttatcatctttagataaagtattagaaa	CRISPR spacer
ttatcatctttagataatttattaaata	Protospacer
*****************  *****.* *

71. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NZ_CP015154 (Bacillus thuringiensis strain Bc601 plasmid pBTBC4, complete sequence) position: , mismatch: 4, identity: 0.857

ttatcatctttagataaagtattagaaa	CRISPR spacer
ttatcatctttagataatttattaaata	Protospacer
*****************  *****.* *

72. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NZ_CP013059 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-4, complete sequence) position: , mismatch: 4, identity: 0.857

ttatcatctttagataaagtattagaaa	CRISPR spacer
ttatcatctttagataatttattaaata	Protospacer
*****************  *****.* *

73. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NZ_MG710485 (Bacillus thuringiensis serovar israelensis strain Bti-UFT6.51 plasmid pBtiUFT6.51.1 complete sequence) position: , mismatch: 4, identity: 0.857

ttatcatctttagataaagtattagaaa	CRISPR spacer
ttatcatctttagataatttattaaata	Protospacer
*****************  *****.* *

74. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 5, identity: 0.821

ttatcatctttagataaagtattagaaa	CRISPR spacer
atatcaactttagataaaatattattaa	Protospacer
 ***** ***********.*****  **

75. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NZ_CP045536 (Bacillaceae bacterium C02 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

76. spacer 4.2|1376195|28|CP019600|PILER-CR matches to CP045772 (Bacillus paranthracis strain CFSAN068816 plasmid p5CFSAN068816, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

77. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_018494 (Bacillus cereus FRI-35 plasmid p04, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

78. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NZ_CP033791 (Bacillus sp. FDAARGOS_527 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

79. spacer 4.2|1376195|28|CP019600|PILER-CR matches to AP013754 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C20-MedDCM-OCT-S24-C67, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
acaggatttttagataaattattagaaa	Protospacer
 .*  **.********** *********

80. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_019005 (Borrelia burgdorferi 297 plasmid 297_cp32-6, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

81. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NZ_CP016363 (Bacillus cereus strain M13 plasmid pBCM1303, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

82. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_018979 (Borrelia burgdorferi 297 plasmid 297_cp32-12, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

83. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_018980 (Borrelia burgdorferi 297 plasmid 297_cp32-7, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

84. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_018981 (Borrelia burgdorferi 297 plasmid 297_cp32-5, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

85. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_018984 (Borrelia burgdorferi 297 plasmid 297_cp32-4, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

86. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_019003 (Borrelia burgdorferi 297 plasmid 297_cp32-1, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

87. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_019004 (Borrelia burgdorferi 297 plasmid 297_cp32-11, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

88. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_019006 (Borrelia burgdorferi 297 plasmid 297_cp32-3, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

89. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_017427 (Borreliella burgdorferi JD1 plasmid JD1 cp32-3, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

90. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_017393 (Borreliella burgdorferi JD1 plasmid JD1 cp32-11, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

91. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_017394 (Borreliella burgdorferi JD1 plasmid JD1 cp32-1+5, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

92. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_017396 (Borreliella burgdorferi JD1 plasmid JD1 cp32-12, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

93. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_017397 (Borreliella burgdorferi JD1 plasmid JD1 cp32-9, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

94. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_017425 (Borreliella burgdorferi JD1 plasmid JD1 cp32-6, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

95. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_017426 (Borreliella burgdorferi JD1 plasmid JD1 cp32-8, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
tagtcatctttagatagagtagtagatg	Protospacer
* .*************.**** **** .

96. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_016774 (Bacillus cereus NC7401 plasmid pNC4, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

97. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_011776 (Bacillus cereus AH820 plasmid pAH820_3, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

98. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NC_011657 (Bacillus cereus AH187 plasmid pAH187_3, complete sequence) position: , mismatch: 6, identity: 0.786

ttatcatctttagataaagtattagaaa	CRISPR spacer
atccaatctttagataaagaatttgaaa	Protospacer
 * . ************** *** ****

99. spacer 3.2|1173855|33|CP019600|CRISPRCasFinder matches to AP014494 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C46-MedDCM-OCT-S46-C77, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces) position: , mismatch: 7, identity: 0.788

gctgctgaaagagctgccgctgctgctaaagca	CRISPR spacer
actgctgtaagtgctgccgctgctgcttataaa	Protospacer
.****** *** *************** * . *

100. spacer 4.1|1376123|31|CP019600|PILER-CR matches to CP002510 (Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28, complete sequence) position: , mismatch: 7, identity: 0.774

-gatgtactagaagacggcggagaaacaattc	CRISPR spacer
ccata-accagaagacggcggagaaagaaatg	Protospacer
  **. **.***************** ** * 

101. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 7, identity: 0.75

ttatcatctttagataaagtattagaaa	CRISPR spacer
aataaaactttagataaagtaatagaaa	Protospacer
     * ************** ******

102. spacer 4.2|1376195|28|CP019600|PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.75

ttatcatctttagataaagtattagaaa	CRISPR spacer
agctcttctatagataaagtattagatc	Protospacer
   ** *** ****************  

103. spacer 4.1|1376123|31|CP019600|PILER-CR matches to MN694288 (Marine virus AFVG_250M340, complete genome) position: , mismatch: 8, identity: 0.742

gatgtactagaagacggcggagaaacaattc	CRISPR spacer
gatgtagtagaagaaggcggagaagccgcag	Protospacer
****** ******* *********.* ..  

104. spacer 4.1|1376123|31|CP019600|PILER-CR matches to MN694316 (Marine virus AFVG_250M341, complete genome) position: , mismatch: 8, identity: 0.742

gatgtactagaagacggcggagaaacaattc	CRISPR spacer
gatgtagtagaagaaggcggagaagccgcag	Protospacer
****** ******* *********.* ..  

105. spacer 4.1|1376123|31|CP019600|PILER-CR matches to MN694631 (Marine virus AFVG_250M342, complete genome) position: , mismatch: 8, identity: 0.742

gatgtactagaagacggcggagaaacaattc	CRISPR spacer
gatgtagtagaagaaggcggagaagccgcag	Protospacer
****** ******* *********.* ..  

106. spacer 4.2|1376195|28|CP019600|PILER-CR matches to MN693323 (Marine virus AFVG_25M87, complete genome) position: , mismatch: 8, identity: 0.714

ttatcatctttagataaagtattagaaa	CRISPR spacer
cataaatctttagataatgtattagatt	Protospacer
.    ************ ********  

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	2111231 : 2119168	11	uncultured_virus(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>CP019600|2111231:2119168|DBSCAN-SWA
TATGGTAAAAAGATTAACCTTAAAAAATGGAACAAGAGTTGTTTTAGAAAAGATGCCTATGCTGGATACTGTATCTATAGGTTTTATATTTTTAACAGGAAGTGCTAATGAGAAAAAAGAAGAAAATGGATATACTCATTTCATAGAGCATATGCTTTTTAAAGGCACTGACAAAATTAGTGCAAAAGAGCTTATTAGAAATATTGAAGGTGTAGGCGGTATATTTAATGCATTTACTTCAAGACATTTAACTTCTTTTTATATCAATATAATATCTAAATATTTTGACAGAGCTGTTAATGCTTTAGAAAATATCATGCTTCATTCTGCATTCAGAGAAGATGATATAAACAGAGAAAAAAAAGTTATTATCGAAGAGCTTAAAATGTCAAATGATACTCCTGAAGAAATATCAGCTAATCAATTTTTTGCTGCTGCTTATAAAGGTACTTCTATGAGCTTCCCTATAGGAGGAAATATTAATAATATAAAAAAAATAAGCAGAGATAAAATTTATTCTTATTTTAAAGAGCATTTTAATTCTAATAATTTAATCATATCAATAGCTGGAAATTTTGATATTGATTATGCTGTTGAAAGATTAGAAAAAATAAAATTAGAAAAAAGAAATAAAACAGTTAATGATGATCTTCCTTTTTATTATAAAACTATAACTAAAGAAAAACAGGAAATTAATCAGGTTTATTTTTCTCTTGTAACACCTTCATATAATGCATGCGATAATAAAAAAAGATACGCTATGAATATAGTTAATGATATATTCGGAGGAAGTTCTTATTCAAGATTATTTCAGTCAATAAGAGAAAATAAAGGACTTTGTTATAATATATATAGTTATAATTCTAGTTTTATAAACGGCGGTACATTTGAGATACATGGTTCTACTAGTTTGGATAGGTATGCAGAAACAATAGAAAGCATATATTGTGAAATAGAAAAATTGGTTAATGAAAGAATATCTGAAGAAGAAATTGAAGAAGCTAAAGAGAGTTATAAAGGTTCTATGGCATTTAGTAAATTCAGTGCAGAATTTATAATGAATAAAAATGCAAGGCATGAATTATATTTATCTAAATATGTTTCATTTAAAGAGCTTTACAATATAATAGATAAAATAGATTTAAAACTTGTTAATGAAGTTATAGACGAAAAATTGATGAATAAAAAATTCTTTTTAACATCTGTAGGAGCAAGCGGTACTAAGGATATAAGCAAGTCTTTAAGCAGTAAACTTAAATTGAATTGATAATAATGTTTGAAATGTATTAAATAATTCTATTGTTATTATATATAATTTTTTGTAAATATTGACTTTTTAAATATATTATGTATAATATGACTTGGAAATAATATGTTTATAAGGTTGTTTTTTAGTGTTTGGTAATTTAACTAAATCTATATCTAATGTATTCTCTAAAATACAAGGAAAAAAAGTCCTAACAGATAAGGATATAACAGATAGTCTATTAACTATAAAAGAAGCACTCTTGTCTGCGGATGTATCTTTAGAAGCTGCTGATAAGTTTCTTGAAGAAGCTACTAACAGAGCTATAGGAAAAGAAAAATTAGAAGGTGTAGAGCCTGCTAATCAATTCGTAGCTGATGTTCATGATACTTTAGTTAATATGATAGGCGAGGGTGAAAGCGGTTTAAAATTAGAGCCTGTTGAAAAAACAACTATAACTTTGCTTTTCGGACTTCAGGGTTCTGGTAAAACTACTACTTCTGCTAAATTGGCTAAATATTATAAAGATAAAAGACGTGTTATGCTTGTTGGACTTGACGTTCACAGACCTGCAGCTATGGAGCAGCTTGCTGTTTTGGCAAGAGAAGTGGGCGTTCCTTATCATATAGATACTAAAGAGAAAAAAGCTTATAAAATACTTAAAAAAGCACTTTCAATTGCTAAGAAAGAGCAGTATAATATGATATTAGTGGATACTGCAGGACGTTTAGAGATAGATGAAGAAATGATGCTTGAACTAAGACGTGTTGTAAACTCTGCTAATGTTACAGAAAAATTATTGGTTGTGGATTCTACAGCAGGTCAGAGTGTTTATGATGTTGCTAAAAGTTTCCAGAACAATATTGGAATAAATGGTGTAATACTTACAAAATTTGATTCCGGAGTTAGAGGCGGTGCTGCTTTATCATTAAAATATGCTACAGGTTCATCTGTTAAGTTTGTCGGAGTAGGTGAGCATTTAGATGATATAGATGTATTTGATGCTAAGAGAGTAGCAGGACAAATACTTGGTATGGGTGATATAGTAAAATTGGTAGAAAAAGCCCGTGCCGCTATAAGTGAAAAAGAAGCTCAGGAAATGCTTCAGAAAGTTATAGAAAATAATTTTGATTATAATGATTTCTTGAAGCAGATAGAAGCCACTGCTAAAATGGGCGGACTTAGTAAGATGACATCTATGATTCCTGGTATGGCTAATGTAGATACTGAACTTTTAAGCCGTGAAGAAGAAAAATTTAAAAAGTATAAAGCTATTATACAGTCAATGACTAAAAAAGAAAGATTAGCCCTATTTCCTTTGAATAACTCAAGAAAGATGAGAATATCTAAAGGAAGCGGTCAAAGTGTTTATGATGTAAATCAGCTTATAAAGCAATTTACTATGATGAAAAACATGATGGGCAGTACTAAAAAGATGGATAAGCTCGCAAAGTCCCTAGAGGGTATGGGTATGTCTATAGATGATTTAAACAAATTAATGTAAATAAACTTGGAGGAAAAGAAAGGTGGTAAAATTAAGATTAAAACGTATAGGTCGCAAACATGAGCCTCATTATCGTATTGTAGCTGCAGATGCTCGTTTCCCACGCGATGGTCGTTTTATTGAAGAGCTAGGTTGGTTTAATCCTAAAGCTAAAGATGTATTATATAAGTTGAATGTAGAAGGTTTGAAAAAATGGCTTTCTAACGGTGCACAGCCAACTTATGTAGTAAAAAGTATTCTTGTTAAAGAAGGTTTGATGGAAAAAGATAAAGGTGCTCCTATTGAAAGAAAGAAAAAAAGAGCATTGAAAAATCCTGAAAAAAGGCGCAAACATCGTAAACAAGCTAAGCCTGAATCTGCTGAGGAGAAGAGCGAAGCTTAATTTACGTCTTATAATATATAAAGGAGTGTGCTATGACGGAAGAAAAAGAGCTTATTGAGTATTTGGCTAAAAAGTTAGTGGATGAGCCTGAGGGTGTTAGTGTTAAGGTTATTGAAGGTGAAAAGAGTACGATTCTGGAATTGAAAGTAAACCAAAGCGACATAGGTAAAATTATAGGTAAAAGAGGTCGTATTGCTCATGCATTACGTACTATTCTTTTTGCAGCTTCCATGAAAAGTGGTAAACGTGTAATGCTTGAGATTATTGACAATTGATGATTTTTTATGCCAAAATCACAGGGTTACATGGTTTAAAAGGAGAGGTAGAAATGGCTTTTACCGATAAAAGTTATTTCACCTCTCTTCCTGTTTTAAGTAAAAATACACCTGTTATCATTAACAATCAAACATTTACTTTATTAAATGTTAAAAAGAAAAATAAATCTTTTGTATTCCAGTTAAAAGATATCAATACTATAGATCAGGCTGAAAAATTGATAGGTCTGGATATATTTATTGATTCTTCACACTTACCTATATTAGATGATGATACTTTTTATGAGGCTGAATTAATCGGATATAAAATCATAGATACTGATAATAATATTTATGGTGAAATAACAGATGTATACAGCCTTCCTTCCAATTATGTATTTGAAATTAAATTAAAAGAAAACAATAATATAGTTTCAATACCATTCGTTAAGGCATATTTTGGGGATTCTGATAAAATAAATAAAACAATATGCATAATACAGAAACCTATATTTGATGAGGATTAATATTTCTTAATTATTAATTGTTTTAATTACATTTTCTAATAAATTAAATTTTTTACTTTTTTTATATTGTTATAGTTATTAGATTGAATAAAAATAAATAAAAGGATGGAAAATGAATAAAATAAAAACAATTATAACAATATTTATTATTTCAGTTGCTGCTTTATTAATTATATCTTGCTCAGAGAAAAATGCTTCTGCATCTGCTGAAGAAGCTAACAATATGGATCATTCAGCTCATACTGCCCATAAAGCTAGTTCTGAGATTGTAGATTTAATGCATCAGCCTATGATGGAACAGCCTTTTCAAAAAACTGCTAATATAGATGCTGATTTTTTATTTAATATGATTCCTCATCATAAAGGAGCTATATTATCTTCTCAAAAATTATTAGAAACTACTAAAAATGAAAAGTTAATAGAGCTAGCTAATAATATAATAGCTGAACAGGATAAAGAGGTTTTAGAGTTTGATGAATTGATTAAAGAATTGAATACTAAAAACACAGATTACAGCGATGTAGATACTGAAGCTATAGGAAATGATATGCAGCTTATTATGGATAATATGATGGCTGATATGTCTTCTATTGAAATTACAGGTGATAATGATATAGATTTTATTAGAGGTATGATACCTCATCATCAGGCAGCTATTGATGTTTCTAAAAAAATATTAGAATATACTAAAGATGAAAAAATAAAAGAAATAGCAAACAGAATAATAACAGCACAGGAAAAAGAAATAGAAGATATGAATAATATGATTAATTCTATGATCTAATATCTATAAAATATGAGCTGGATTGAAAAAATTCGGCTCTTCTTTTATTTATGAATAATTGACAAATTGATTTATTTTTGTATAATCTATATACTTAAATTATGGTAATGTATTATGGCTAGTAAAAAGGATAAAAAATCAGGCAGCAATACTATTTCTTCTGGTGAGATAGTAAAAAATAAAAAGGCTTTATTCAATTATGAGCTTGTAGAGAAGTTTGAGGCAGGTATTGTTTTGCTTGGTACAGAGGTAAAATCCCTAAGAGAAAGAAGCGTTAATATGTCTGATAGTTATGCCTCTTTTAAAAAGGGAGAGCTTTTTATAGTTAATATGCATATATCCCCTTATCATTTTGGAAATAGAAATAATCATGAACCATTAAGAGAAAGAAAACTTTTAATGAAAAAAAGGGAATTAAGAAGATTATACGGAAAAATCAAAGAACAAGGTCTTACTTTGATACCTGTTAAATTATATTTTTCTAGAGGAAAAGTTAAAGTAGAATTAGCATTGGCTAAAGGTAAGAAACTTCATGATAAAAGAGAAACTTTAAAAAGAAAGACTTTAGACAGAGAAATGGAAAGATATATTAAAAGATAATATATTTATTTCTCATAAGATAAAGCATTTCTTATATAAAATTCTAATTTACTAATATTGTCTGATACTTCTTTTATATTTCTTTTTTTATCTTCATCTGTTTTGTATTTTTTTAGTGAGTCTATAAATTCAATTAATAAATCTTTTATATTATTCATAGAAGTTTTTTCAAATTGTTTTGCCATAACTTCTATTTTTTCTATGGTACTGTAATCTATATTGTTTATGCCGCTGAAAATTATATCGGATAAAAGTATTTCCAAATCTCTTATTAAAGCGAAAATCATATATTACCTGTTATTGTCTTTTATTTTTAATAAATTAAGTCTGTATAAGAAAGGTATATCCTTTTTTACTTTAACAATATAAAGAGCAGAAGCTGCAAATATTCCGATTAAAGCAGTTACTAGAGATAAATTATTCATAACAAAAACAGTTTGATATAAAATTAATATACATATAGGTATATATATCCCGCCTGCTAATGCTGTAAGTATCAAAAATAAGAAGAATACAAATACTGGATTACCCATAACTGCATTATCGAATATATATTCTGTACCCATATGAGTAGAAAATGTTTCAAGATATAAATATATTGTAGAAATGCATGCCAGTATAAAAAATGCTATAGCATATATTTTTTCTCTTTTTACTAAGAATCCTGCTATGAAAAATGCTATAAGTATAACAGAAAAAATATAACTATCTAAAAGCAGAAAACAAGCCACTATTAATAACTCTGTCAATATTATAAATATCATAAGAGCAAAGTTCTTTTTGATAGATGCAAAGCCGAAGAATGTATATATTATTATTTTAGATTTACTGTTTCTATATTCTTCATATATATGCTTGAAATAACTTATAAATATTAATGCAATAGATACCAAAAATAGAGATGGAAATAGGGTTGATGTTATTAATATAGAGCTTTTAATATTTACATTATCACCATCTCCTATTATTAATGAAGATATTTTATTTCCTTTTTCTTCTTTTATATTTACATAAGCATATTCTTCATAAGATATATTTGTATTTCCTGTTGAGCCTACATAAAGTATATGCATAAGTACAACGCCATTTCCAGGATTTTTTAAATTTATCTTAGCCTTTGCTATTCCATTTTCATCTGTAGGAACAACATATACATTACTATAGAGATTAACAGATTCATTAGTATTTAATGCTGTTTCTTCATTTTCATCTATTTCTTTTAAAAGTATTTCTTCTTTTTGGTTTTCATCTATTTCAAAGTCAAACATATCAGGATGTAATGATGTGAATCTTACCAATCTATTAACAAGAGGAAAGCCTCTTCTTTCAAGCATTATAGATATTTCATTTTGTGTATTTGTCGAATCTGATTCATTAACTTCATTTGATTCATTATATATGATAAAATTATTTTCTTTTTCGTAAGTAAATTTATATTCAGGATCTTTATTTGTTGTATTATCTTGAGCATATACTATATTTAATATTGCAAGAAATATTATAAAATATTTTAGCATTTATAAAAATCTCCTGATTAAAGAAACGAAATTAATGATTGTTATTAATTATCGAACAAATTAATAAAATTAAATAATATAATTTTATATTATTTAACCTTATTAATTCTTTATGATACGAAAAAGTTTTATTAACAATTATATAAACTGCTAAAAAACCCAATTAGTAAAAAAGAACACCATCTTTTTTTAAGATTAGTGTTCTTTATTTTTTATTTGTATAGCTATTAATTATTTTATAAGAGCAACTATCTCTTCATTTTTTACTATTAAGTATTCAGTATCTCCTTCTTTAATTTGAATACCTGCATATTTATCATATATAACTATATCGCCTTTTTTCACTTTTATATCTTCGCTGTCTCCTACTTCTACAACTTCTGCTTTCTGAGTTTTTTCTTTAGCTGTATCTGGAAGAAGTATTCCGCTTGAAGTTTTTTCTTCTTGTTCTAATACTTTTAAAAGAACTCTATCTGCTAATGGTTTAATAGATGGCATATTTTATATCTCCTTAAAATGTATTTATTTCGATAATTTTTTTTAATAATTTTTGCTATATTCTATAATAAAAAAACTTAAAAGTCAATAACTGATTAAATACTAATATTTATTTAGTATTCTATAAGAACATTAACAGGATATTTTTCTATTTCTTTTCTTCCATTTAATTCTTTTAATTCTATTAAAAAAGAAGAACCTACAACTATGCCCTCTAATTTTTCAACCATTTTTATCATAGCTAGAGCTGTTCCGCCTGTAGCTATTAAATCATCTACTATTAAAACTCTTTCTCCTTTTTTAATAGCATCTTCATGCATATATAAAGTATCTGTACCGTACTCTAAAGCATATTCTTCTGAAATAGTTTTGTAAGGTAATTTACCTTTTTTTCTTACTGGTATAAATCCGCAGTTTAGTTTATAAGCTAATGCTGAACCTATTAAAAATCCTCTGCTTTCTGCTCCAACTATATAATCTATTTTTTCACTGCTTATTTGTTCAGCCATTTTATCTATTGCATATTTGAATGCATCTTTATTTTGTAGTAAAGTAGTGATGTCTCTAAAAAGTATACCTTTTTTAGGATAATCTTGAATATTTCTTATATAGTCTTTTAACTCCAT

Protein sequences of DBSCAN-SWA_1

>CP019600|2111231:2119168|2116532_2116814_-|AUJ50245.1|DBSCAN-SWA
MIFALIRDLEILLSDIIFSGINNIDYSTIEKIEVMAKQFEKTSMNNIKDLLIEFIDSLKKYKTDEDKKRNIKEVSDNISKLEFYIRNALSYEK
>CP019600|2111231:2119168|2114394_2114637_+|AUJ50241.1|DBSCAN-SWA
MTEEKELIEYLAKKLVDEPEGVSVKVIEGEKSTILELKVNQSDIGKIIGKRGRIAHALRTILFAASMKSGKRVMLEIIDN
>CP019600|2111231:2119168|2112624_2113980_+|AUJ50239.1|DBSCAN-SWA
MFGNLTKSISNVFSKIQGKKVLTDKDITDSLLTIKEALLSADVSLEAADKFLEEATNRAIGKEKLEGVEPANQFVADVHDTLVNMIGEGESGLKLEPVEKTTITLLFGLQGSGKTTTSAKLAKYYKDKRRVMLVGLDVHRPAAMEQLAVLAREVGVPYHIDTKEKKAYKILKKALSIAKKEQYNMILVDTAGRLEIDEEMMLELRRVVNSANVTEKLLVVDSTAGQSVYDVAKSFQNNIGINGVILTKFDSGVRGGAALSLKYATGSSVKFVGVGEHLDDIDVFDAKRVAGQILGMGDIVKLVEKARAAISEKEAQEMLQKVIENNFDYNDFLKQIEATAKMGGLSKMTSMIPGMANVDTELLSREEEKFKKYKAIIQSMTKKERLALFPLNNSRKMRISKGSGQSVYDVNQLIKQFTMMKNMMGSTKKMDKLAKSLEGMGMSIDDLNKLM
>CP019600|2111231:2119168|2116817_2118044_-|AUJ50246.1|DBSCAN-SWA
MLKYFIIFLAILNIVYAQDNTTNKDPEYKFTYEKENNFIIYNESNEVNESDSTNTQNEISIMLERRGFPLVNRLVRFTSLHPDMFDFEIDENQKEEILLKEIDENEETALNTNESVNLYSNVYVVPTDENGIAKAKINLKNPGNGVVLMHILYVGSTGNTNISYEEYAYVNIKEEKGNKISSLIIGDGDNVNIKSSILITSTLFPSLFLVSIALIFISYFKHIYEEYRNSKSKIIIYTFFGFASIKKNFALMIFIILTELLIVACFLLLDSYIFSVILIAFFIAGFLVKREKIYAIAFFILACISTIYLYLETFSTHMGTEYIFDNAVMGNPVFVFFLFLILTALAGGIYIPICILILYQTVFVMNNLSLVTALIGIFAASALYIVKVKKDIPFLYRLNLLKIKDNNR
>CP019600|2111231:2119168|2118655_2119168_-|AUJ50248.1|DBSCAN-SWA
MELKDYIRNIQDYPKKGILFRDITTLLQNKDAFKYAIDKMAEQISSEKIDYIVGAESRGFLIGSALAYKLNCGFIPVRKKGKLPYKTISEEYALEYGTDTLYMHEDAIKKGERVLIVDDLIATGGTALAMIKMVEKLEGIVVGSSFLIELKELNGRKEIEKYPVNVLIEY
>CP019600|2111231:2119168|2114002_2114362_+|AUJ50240.1|DBSCAN-SWA
MVKLRLKRIGRKHEPHYRIVAADARFPRDGRFIEELGWFNPKAKDVLYKLNVEGLKKWLSNGAQPTYVVKSILVKEGLMEKDKGAPIERKKKRALKNPEKRRKHRKQAKPESAEEKSEA
>CP019600|2111231:2119168|2114636_2115143_+|AUJ50242.1|DBSCAN-SWA
MIFYAKITGLHGLKGEVEMAFTDKSYFTSLPVLSKNTPVIINNQTFTLLNVKKKNKSFVFQLKDINTIDQAEKLIGLDIFIDSSHLPILDDDTFYEAELIGYKIIDTDNNIYGEITDVYSLPSNYVFEIKLKENNNIVSIPFVKAYFGDSDKINKTICIIQKPIFDED
>CP019600|2111231:2119168|2118275_2118542_-|AUJ50247.1|DBSCAN-SWA
MPSIKPLADRVLLKVLEQEEKTSSGILLPDTAKEKTQKAEVVEVGDSEDIKVKKGDIVIYDKYAGIQIKEGDTEYLIVKNEEIVALIK
>CP019600|2111231:2119168|2115255_2115927_+|AUJ50243.1|DBSCAN-SWA
MNKIKTIITIFIISVAALLIISCSEKNASASAEEANNMDHSAHTAHKASSEIVDLMHQPMMEQPFQKTANIDADFLFNMIPHHKGAILSSQKLLETTKNEKLIELANNIIAEQDKEVLEFDELIKELNTKNTDYSDVDTEAIGNDMQLIMDNMMADMSSIEITGDNDIDFIRGMIPHHQAAIDVSKKILEYTKDEKIKEIANRIITAQEKEIEDMNNMINSMI
>CP019600|2111231:2119168|2116041_2116527_+|AUJ50244.1|DBSCAN-SWA
MASKKDKKSGSNTISSGEIVKNKKALFNYELVEKFEAGIVLLGTEVKSLRERSVNMSDSYASFKKGELFIVNMHISPYHFGNRNNHEPLRERKLLMKKRELRRLYGKIKEQGLTLIPVKLYFSRGKVKVELALAKGKKLHDKRETLKRKTLDREMERYIKR
>CP019600|2111231:2119168|2111231_2112497_+|AUJ50238.1|DBSCAN-SWA
MVKRLTLKNGTRVVLEKMPMLDTVSIGFIFLTGSANEKKEENGYTHFIEHMLFKGTDKISAKELIRNIEGVGGIFNAFTSRHLTSFYINIISKYFDRAVNALENIMLHSAFREDDINREKKVIIEELKMSNDTPEEISANQFFAAAYKGTSMSFPIGGNINNIKKISRDKIYSYFKEHFNSNNLIISIAGNFDIDYAVERLEKIKLEKRNKTVNDDLPFYYKTITKEKQEINQVYFSLVTPSYNACDNKKRYAMNIVNDIFGGSSYSRLFQSIRENKGLCYNIYSYNSSFINGGTFEIHGSTSLDRYAETIESIYCEIEKLVNERISEEEIEEAKESYKGSMAFSKFSAEFIMNKNARHELYLSKYVSFKELYNIIDKIDLKLVNEVIDEKLMNKKFFLTSVGASGTKDISKSLSSKLKLN

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ50238.1|2111231_2112497_+	peptidase M16	G3MBJ8	Bacillus_virus	7.5e-35	30.8
AUJ50239.1|2112624_2113980_+	signal recognition particle protein	D6PHS7	uncultured_phage	4.6e-06	31.7
AUJ50240.1|2114002_2114362_+	30S ribosomal protein S16	NA	NA	NA	NA
AUJ50241.1|2114394_2114637_+	KH domain-containing protein	NA	NA	NA	NA
AUJ50242.1|2114636_2115143_+	16S rRNA processing protein RimM	NA	NA	NA	NA
AUJ50243.1|2115255_2115927_+	hypothetical protein	A0A218MND9	uncultured_virus	1.2e-12	34.1
AUJ50244.1|2116041_2116527_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	1.7e-32	49.3
AUJ50245.1|2116532_2116814_-	hypothetical protein	NA	NA	NA	NA
AUJ50246.1|2116817_2118044_-	hypothetical protein	NA	NA	NA	NA
AUJ50247.1|2118275_2118542_-	molecular chaperone GroES	A0A221S4G8	uncultured_virus	4.4e-06	36.1
AUJ50248.1|2118655_2119168_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.6e-31	44.7