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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP025541 Klebsiella sp. 2N3 chromosome, complete genome 3 crisprs NA 0 15 0 0

Results visualization

1. CP025541
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025541_1 1456827-1456921 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025541_2 4575399-4575731 Orphan I-E,II-B
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025541_3 4584485-4585976 Orphan I-B,III-A,III-B
24 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP025541_2 2.2|4575488|33|CP025541|PILER-CR,CRT 4575488-4575520 33 MN013086 Klebsiella phage vB_Kpn_Chronis, complete genome 7591-7623 0 1.0
CP025541_3 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585611-4585643 33 NC_048647 UNVERIFIED: Klebsiella phage KNP2 genomic sequence 113213-113245 0 1.0
CP025541_3 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585611-4585643 33 KX452695 UNVERIFIED: Klebsiella phage KPN2 genomic sequence 113213-113245 0 1.0
CP025541_3 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585611-4585643 33 NC_048656 Klebsiella phage vB_KpnM_BIS47, complete genome 109191-109223 0 1.0
CP025541_2 2.1|4575427|33|CP025541|PILER-CR,CRT 4575427-4575459 33 MN013086 Klebsiella phage vB_Kpn_Chronis, complete genome 1453-1485 1 0.97
CP025541_2 2.7|4575487|34|CP025541|CRISPRCasFinder 4575487-4575520 34 MN013086 Klebsiella phage vB_Kpn_Chronis, complete genome 7591-7624 1 0.971
CP025541_3 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585611-4585643 33 MT939253 Klebsiella phage vB_KpnM_Seu621, complete genome 120983-121015 1 0.97
CP025541_3 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585611-4585643 33 MK024806 Proteus phage Mydo, complete genome 31076-31108 1 0.97
CP025541_3 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585611-4585643 33 NC_028659 Klebsiella phage vB_KpnM_KB57, complete genome 122390-122422 1 0.97
CP025541_3 3.21|4585733|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585733-4585765 33 KY271395 Klebsiella phage 2b LV-2017, complete genome 18470-18502 1 0.97
CP025541_3 3.21|4585733|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585733-4585765 33 KY271396 Klebsiella phage 2 LV-2017, complete genome 26199-26231 1 0.97
CP025541_3 3.21|4585733|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585733-4585765 33 MK448231 Klebsiella phage ST101-KPC2phi6.1, complete genome 19646-19678 1 0.97
CP025541_2 2.5|4575671|33|CP025541|PILER-CR,CRT 4575671-4575703 33 MN098327 Klebsiella phage Mulock, complete genome 25513-25545 2 0.939
CP025541_2 2.5|4575671|33|CP025541|PILER-CR,CRT 4575671-4575703 33 KY271400 Klebsiella phage 6 LV-2017, complete genome 17605-17637 2 0.939
CP025541_2 2.6|4575426|34|CP025541|CRISPRCasFinder 4575426-4575459 34 MN013086 Klebsiella phage vB_Kpn_Chronis, complete genome 1452-1485 2 0.941
CP025541_3 3.6|4584818|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4584818-4584850 33 MN106244 Klebsiella phage Soft, complete genome 1798-1830 2 0.939
CP025541_3 3.15|4585367|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585367-4585399 33 MK416007 Klebsiella phage ST405-OXA48phi1.2, complete genome 38762-38794 2 0.939
CP025541_3 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585611-4585643 33 NC_048682 Raoultella phage Ro1, complete genome 23436-23468 2 0.939
CP025541_3 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585611-4585643 33 MT178275 Klebsiella virus KpS8, complete genome 121894-121926 2 0.939
CP025541_2 2.10|4575670|34|CP025541|CRISPRCasFinder 4575670-4575703 34 MN098327 Klebsiella phage Mulock, complete genome 25512-25545 3 0.912
CP025541_2 2.10|4575670|34|CP025541|CRISPRCasFinder 4575670-4575703 34 KY271400 Klebsiella phage 6 LV-2017, complete genome 17605-17638 3 0.912
CP025541_2 2.3|4575549|33|CP025541|PILER-CR,CRT 4575549-4575581 33 NZ_CP007130 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence 377538-377570 7 0.788
CP025541_2 2.8|4575548|34|CP025541|CRISPRCasFinder 4575548-4575581 34 NZ_CP007130 Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence 377537-377570 7 0.794
CP025541_3 3.12|4585184|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585184-4585216 33 NC_021910 Rhizobium etli bv. mimosae str. Mim1 plasmid pRetNIM1c, complete sequence 77144-77176 7 0.788
CP025541_2 2.3|4575549|33|CP025541|PILER-CR,CRT 4575549-4575581 33 NZ_CP022565 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence 912546-912578 8 0.758
CP025541_3 3.9|4585001|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585001-4585033 33 NZ_CP027853 Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence 223169-223201 8 0.758
CP025541_3 3.15|4585367|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585367-4585399 33 NZ_CP012267 Cronobacter dublinensis subsp. dublinensis LMG 23823 plasmid pCDU1, complete sequence 57133-57165 8 0.758
CP025541_2 2.2|4575488|33|CP025541|PILER-CR,CRT 4575488-4575520 33 NZ_CP017304 Rhodococcus sp. YL-1 plasmid pYLL2 sequence 19104-19136 9 0.727
CP025541_2 2.2|4575488|33|CP025541|PILER-CR,CRT 4575488-4575520 33 NZ_CP039641 Azospirillum sp. TSH100 plasmid p2, complete sequence 17659-17691 9 0.727
CP025541_2 2.8|4575548|34|CP025541|CRISPRCasFinder 4575548-4575581 34 NZ_CP022565 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence 912546-912579 9 0.735
CP025541_3 3.9|4585001|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585001-4585033 33 NZ_AP014706 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence 145808-145840 9 0.727
CP025541_3 3.11|4585123|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4585123-4585155 33 NZ_CP028348 Novosphingobium sp. THN1 plasmid pTHN, complete sequence 109041-109073 9 0.727
CP025541_2 2.7|4575487|34|CP025541|CRISPRCasFinder 4575487-4575520 34 NZ_CP017304 Rhodococcus sp. YL-1 plasmid pYLL2 sequence 19104-19137 10 0.706
CP025541_2 2.7|4575487|34|CP025541|CRISPRCasFinder 4575487-4575520 34 NZ_CP039641 Azospirillum sp. TSH100 plasmid p2, complete sequence 17659-17692 10 0.706
CP025541_3 3.6|4584818|33|CP025541|PILER-CR,CRISPRCasFinder,CRT 4584818-4584850 33 NZ_CP032322 Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence 1908200-1908232 10 0.697

1. spacer 2.2|4575488|33|CP025541|PILER-CR,CRT matches to MN013086 (Klebsiella phage vB_Kpn_Chronis, complete genome) position: , mismatch: 0, identity: 1.0

tggtcatcgcgccccttggcctgctctgcgctg	CRISPR spacer
tggtcatcgcgccccttggcctgctctgcgctg	Protospacer
*********************************

2. spacer 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NC_048647 (UNVERIFIED: Klebsiella phage KNP2 genomic sequence) position: , mismatch: 0, identity: 1.0

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caataaacggcataagccggaacggatcgcggt	Protospacer
*********************************

3. spacer 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to KX452695 (UNVERIFIED: Klebsiella phage KPN2 genomic sequence) position: , mismatch: 0, identity: 1.0

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caataaacggcataagccggaacggatcgcggt	Protospacer
*********************************

4. spacer 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NC_048656 (Klebsiella phage vB_KpnM_BIS47, complete genome) position: , mismatch: 0, identity: 1.0

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caataaacggcataagccggaacggatcgcggt	Protospacer
*********************************

5. spacer 2.1|4575427|33|CP025541|PILER-CR,CRT matches to MN013086 (Klebsiella phage vB_Kpn_Chronis, complete genome) position: , mismatch: 1, identity: 0.97

cgatttacctcttccacccgcttggcgggaaaa	CRISPR spacer
cgatttacctcttccacccgctgggcgggaaaa	Protospacer
********************** **********

6. spacer 2.7|4575487|34|CP025541|CRISPRCasFinder matches to MN013086 (Klebsiella phage vB_Kpn_Chronis, complete genome) position: , mismatch: 1, identity: 0.971

ctggtcatcgcgccccttggcctgctctgcgctg	CRISPR spacer
atggtcatcgcgccccttggcctgctctgcgctg	Protospacer
 *********************************

7. spacer 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to MT939253 (Klebsiella phage vB_KpnM_Seu621, complete genome) position: , mismatch: 1, identity: 0.97

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caacaaacggcataagccggaacggatcgcggt	Protospacer
***.*****************************

8. spacer 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to MK024806 (Proteus phage Mydo, complete genome) position: , mismatch: 1, identity: 0.97

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caacaaacggcataagccggaacggatcgcggt	Protospacer
***.*****************************

9. spacer 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NC_028659 (Klebsiella phage vB_KpnM_KB57, complete genome) position: , mismatch: 1, identity: 0.97

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caacaaacggcataagccggaacggatcgcggt	Protospacer
***.*****************************

10. spacer 3.21|4585733|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to KY271395 (Klebsiella phage 2b LV-2017, complete genome) position: , mismatch: 1, identity: 0.97

caaaaagcgattttttcgcagcagggtcttgca	CRISPR spacer
caaaaagcgactttttcgcagcagggtcttgca	Protospacer
**********.**********************

11. spacer 3.21|4585733|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to KY271396 (Klebsiella phage 2 LV-2017, complete genome) position: , mismatch: 1, identity: 0.97

caaaaagcgattttttcgcagcagggtcttgca	CRISPR spacer
caaaaagcgactttttcgcagcagggtcttgca	Protospacer
**********.**********************

12. spacer 3.21|4585733|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 1, identity: 0.97

caaaaagcgattttttcgcagcagggtcttgca	CRISPR spacer
caaaaagcgactttttcgcagcagggtcttgca	Protospacer
**********.**********************

13. spacer 2.5|4575671|33|CP025541|PILER-CR,CRT matches to MN098327 (Klebsiella phage Mulock, complete genome) position: , mismatch: 2, identity: 0.939

ttcatcacgtgtgagcggatttggctctatcct	CRISPR spacer
ttcatcacgtgtgagcggatctggttctatcct	Protospacer
********************.***.********

14. spacer 2.5|4575671|33|CP025541|PILER-CR,CRT matches to KY271400 (Klebsiella phage 6 LV-2017, complete genome) position: , mismatch: 2, identity: 0.939

ttcatcacgtgtgagcggatttggctctatcct	CRISPR spacer
ttcatcacgtgtgagcggatctggttctatcct	Protospacer
********************.***.********

15. spacer 2.6|4575426|34|CP025541|CRISPRCasFinder matches to MN013086 (Klebsiella phage vB_Kpn_Chronis, complete genome) position: , mismatch: 2, identity: 0.941

ccgatttacctcttccacccgcttggcgggaaaa	CRISPR spacer
acgatttacctcttccacccgctgggcgggaaaa	Protospacer
 ********************** **********

16. spacer 3.6|4584818|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to MN106244 (Klebsiella phage Soft, complete genome) position: , mismatch: 2, identity: 0.939

tctttatgtccgcttgcgaggcgatcagggtca	CRISPR spacer
tctttatgtcggcttgcgaggcgatcagtgtca	Protospacer
********** ***************** ****

17. spacer 3.15|4585367|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to MK416007 (Klebsiella phage ST405-OXA48phi1.2, complete genome) position: , mismatch: 2, identity: 0.939

tcgcgttttatatggttgtcgctgtaccagcgc	CRISPR spacer
tcgcgcttaatatggttgtcgctgtaccagcgc	Protospacer
*****.** ************************

18. spacer 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NC_048682 (Raoultella phage Ro1, complete genome) position: , mismatch: 2, identity: 0.939

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caacaaacggcataagccggaacggattgcggt	Protospacer
***.***********************.*****

19. spacer 3.19|4585611|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to MT178275 (Klebsiella virus KpS8, complete genome) position: , mismatch: 2, identity: 0.939

caataaacggcataagccggaacggatcgcggt	CRISPR spacer
caacaaacggcataaaccggaacggatcgcggt	Protospacer
***.***********.*****************

20. spacer 2.10|4575670|34|CP025541|CRISPRCasFinder matches to MN098327 (Klebsiella phage Mulock, complete genome) position: , mismatch: 3, identity: 0.912

cttcatcacgtgtgagcggatttggctctatcct	CRISPR spacer
attcatcacgtgtgagcggatctggttctatcct	Protospacer
 ********************.***.********

21. spacer 2.10|4575670|34|CP025541|CRISPRCasFinder matches to KY271400 (Klebsiella phage 6 LV-2017, complete genome) position: , mismatch: 3, identity: 0.912

cttcatcacgtgtgagcggatttggctctatcct	CRISPR spacer
attcatcacgtgtgagcggatctggttctatcct	Protospacer
 ********************.***.********

22. spacer 2.3|4575549|33|CP025541|PILER-CR,CRT matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.788

tgcgcgatatccgcgccgcgttagcgatgtggt	CRISPR spacer
tgcgcgagatccgcgccgtgttaggcagggggc	Protospacer
******* **********.*****  * * **.

23. spacer 2.8|4575548|34|CP025541|CRISPRCasFinder matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.794

ctgcgcgatatccgcgccgcgttagcgatgtggt	CRISPR spacer
ctgcgcgagatccgcgccgtgttaggcagggggc	Protospacer
******** **********.*****  * * **.

24. spacer 3.12|4585184|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NC_021910 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetNIM1c, complete sequence) position: , mismatch: 7, identity: 0.788

caccctgcgtcgctggtactgccgcacgcaaaa	CRISPR spacer
ctctttgcgtcgcgggtattgccgcacgcacga	Protospacer
* *..******** ****.*********** .*

25. spacer 2.3|4575549|33|CP025541|PILER-CR,CRT matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 8, identity: 0.758

tgcgcgatatccgcgccgcgttagcgatgtggt	CRISPR spacer
tgcgcgatatcctcgccgcgtcagaggcgaagc	Protospacer
************ ********.** *..* .*.

26. spacer 3.9|4585001|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027853 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence) position: , mismatch: 8, identity: 0.758

tcgagttgccagcgcgccacgctgatccgcagg	CRISPR spacer
ttcacttgccagcgggacacgctgatccgtaat	Protospacer
*. * ********* * ************.*. 

27. spacer 3.15|4585367|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012267 (Cronobacter dublinensis subsp. dublinensis LMG 23823 plasmid pCDU1, complete sequence) position: , mismatch: 8, identity: 0.758

tcgcgttttatatggttgtcgctgtaccagcgc	CRISPR spacer
ttcagggtgatatggttgtcgcggaaccagcgc	Protospacer
*.  *  * ************* * ********

28. spacer 2.2|4575488|33|CP025541|PILER-CR,CRT matches to NZ_CP017304 (Rhodococcus sp. YL-1 plasmid pYLL2 sequence) position: , mismatch: 9, identity: 0.727

tggtcatcgcgccccttggcctgctctgcgctg	CRISPR spacer
atgatatcgcggcccttggcctgctcttcgtct	Protospacer
  * .****** *************** **.. 

29. spacer 2.2|4575488|33|CP025541|PILER-CR,CRT matches to NZ_CP039641 (Azospirillum sp. TSH100 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.727

tggtcatcgcgccccttggcctgctctgcgctg	CRISPR spacer
acatattcgcgccccttcgcctgctgtgcgatc	Protospacer
  .*  *********** ******* **** * 

30. spacer 2.8|4575548|34|CP025541|CRISPRCasFinder matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 9, identity: 0.735

ctgcgcgatatccgcgccgcgttagcgatgtggt	CRISPR spacer
ttgcgcgatatcctcgccgcgtcagaggcgaagc	Protospacer
.************ ********.** *..* .*.

31. spacer 3.9|4585001|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014706 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_2p, complete sequence) position: , mismatch: 9, identity: 0.727

tcgagttgccagcgcgccacgctgatccgcagg	CRISPR spacer
ggcatgcgccagcgcgcctcgctgatgcgcacg	Protospacer
   *  .*********** ******* **** *

32. spacer 3.11|4585123|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 9, identity: 0.727

tggcatccgtgtaacgggaagcggccttgcgga	CRISPR spacer
tcatcgacatgtaactgaaagcggccttgcgga	Protospacer
* ..   *.****** *.***************

33. spacer 2.7|4575487|34|CP025541|CRISPRCasFinder matches to NZ_CP017304 (Rhodococcus sp. YL-1 plasmid pYLL2 sequence) position: , mismatch: 10, identity: 0.706

ctggtcatcgcgccccttggcctgctctgcgctg	CRISPR spacer
gatgatatcgcggcccttggcctgctcttcgtct	Protospacer
   * .****** *************** **.. 

34. spacer 2.7|4575487|34|CP025541|CRISPRCasFinder matches to NZ_CP039641 (Azospirillum sp. TSH100 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.706

ctggtcatcgcgccccttggcctgctctgcgctg	CRISPR spacer
gacatattcgcgccccttcgcctgctgtgcgatc	Protospacer
   .*  *********** ******* **** * 

35. spacer 3.6|4584818|33|CP025541|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.697

tctttatgtccgcttgcgaggcgatcagggtca	CRISPR spacer
agcgcgttcccgctttcgaggcgatcaaggtca	Protospacer
  . ..* .****** ***********.*****

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage