CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP020713	Staphylococcus aureus strain K17 chromosome, complete genome	4 crisprs	DinG,cas3,DEDDh,csa3	4	1	9	1

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP020713_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020713_2

685473-685557

Orphan

Consensus_repeat	Method
CTTTTCGTCAGCTTCTATGTTGGGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP020713_2

>merge|CP020713|2|685473-685557|CRISPRCasFinder
CTTTTCGTCAGCTTCTATGTTGGGGCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCC

>CP020713|2|1|685473-685557|CRISPRCasFinder
CTTTTCGTCAGCTTCTATGTTGGGGCCC	ACCCCAACTTGCACATTATAGTAAGCTGA
CTTTTCGTCAGCTTCTGTGTTGGGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP020713.1\|AUJ55736.1\|674654_675338_-\|serine-protease	unknown	unknown	gnl\|CDD\|223961
CP020713.1\|AUJ53788.1\|678156_679095_-\|ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP020713.1\|AUJ53800.1\|693396_693750_-\|ribosome-silencing-factor-RsfS	unknown	unknown	gnl\|CDD\|223870
CP020713.1\|AUJ53799.1\|692677_693394_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP020713.1\|AUJ53785.1\|675580_675757_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP020713.1\|AUJ53802.1\|694324_694894_-\|nicotinate-nicotinamide-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|273101
CP020713.1\|AUJ53786.1\|676049_677396_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
CP020713.1\|AUJ53796.1\|689192_691340_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|225212
CP020713.1\|AUJ53789.1\|679098_680238_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237656
CP020713.1\|AUJ53792.1\|682932_683910_-\|HrcA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273017
CP020713.1\|AUJ53794.1\|687865_688117_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
CP020713.1\|AUJ55737.1\|684010_685135_-\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236309
CP020713.1\|AUJ53795.1\|688161_689136_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
CP020713.1\|AUJ53790.1\|680373_682206_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
CP020713.1\|AUJ53787.1\|677402_678155_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|224303
CP020713.1\|AUJ53791.1\|682274_682901_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237622
CP020713.1\|AUJ53798.1\|691951_692638_-\|competence-protein-ComE	unknown	unknown	gnl\|CDD\|224472
CP020713.1\|AUJ53793.1\|685696_687520_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
CP020713.1\|AUJ53801.1\|693750_694335_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|224627
CP020713.1\|AUJ53797.1\|691398_691860_-\|ComE-operon-protein-2	unknown	unknown	gnl\|CDD\|131622

Protein	Function_ID	Function_description	E-value
CP020713.1\|AUJ55736.1\|674654_675338_-\|serine-protease	gnl\|CDD\|223961	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones].	8.78003e-63
CP020713.1\|AUJ53788.1\|678156_679095_-\|ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	2.33603e-133
CP020713.1\|AUJ53800.1\|693396_693750_-\|ribosome-silencing-factor-RsfS	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	5.95861e-47
CP020713.1\|AUJ53799.1\|692677_693394_-\|SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.00559e-15
CP020713.1\|AUJ53785.1\|675580_675757_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.15423e-10
CP020713.1\|AUJ53802.1\|694324_694894_-\|nicotinate-nicotinamide-nucleotide-adenylyltransferase	gnl\|CDD\|273101	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	1.98239e-76
CP020713.1\|AUJ53786.1\|676049_677396_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
CP020713.1\|AUJ53796.1\|689192_691340_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|225212	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only].	1.36441e-90
CP020713.1\|AUJ53789.1\|679098_680238_-\|molecular-chaperone-DnaJ	gnl\|CDD\|237656	PRK14280, PRK14280, molecular chaperone DnaJ.	0
CP020713.1\|AUJ53792.1\|682932_683910_-\|HrcA-family-transcriptional-regulator	gnl\|CDD\|273017	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA. HrcA represses the class I heat shock operons groE and dnaK; overproduction prevents induction of these operons by heat shock while deletion allows constitutive expression even at low temperatures. In Bacillus subtilis, hrcA is the first gene of the dnaK operon and so is itself a heat shock gene. [Regulatory functions, DNA interactions].	2.05887e-119
CP020713.1\|AUJ53794.1\|687865_688117_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	1.42889e-17
CP020713.1\|AUJ55737.1\|684010_685135_-\|coproporphyrinogen-III-oxidase	gnl\|CDD\|236309	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase.	0
CP020713.1\|AUJ53795.1\|688161_689136_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	4.1415e-104
CP020713.1\|AUJ53790.1\|680373_682206_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
CP020713.1\|AUJ53787.1\|677402_678155_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|224303	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown].	1.35142e-90
CP020713.1\|AUJ53791.1\|682274_682901_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237622	PRK14140, PRK14140, heat shock protein GrpE; Provisional.	3.74407e-81
CP020713.1\|AUJ53798.1\|691951_692638_-\|competence-protein-ComE	gnl\|CDD\|224472	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair].	2.53337e-32
CP020713.1\|AUJ53793.1\|685696_687520_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP020713.1\|AUJ53801.1\|693750_694335_-\|HAD-family-hydrolase	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	8.54529e-80
CP020713.1\|AUJ53797.1\|691398_691860_-\|ComE-operon-protein-2	gnl\|CDD\|131622	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.	4.81051e-102

>CP020713.1|AUJ55737.1|684010_685135_-|coproporphyrinogen-III-oxidase
MTVQSAYIHIPFCVRICTYCDFNKYFIQNQPVDEYLDALITEMSTAKYRNLKTMYVGGGTPTALSINQLERLLKAIRDTFTITGEYTFEANPDELTKEKVQLLEKYGVNRISMGVQTFKPELLSVLGRTHNTEDIYTSVLNAKNAGIKSISLDLMYHLPKQTIEDFEQSLDLALDMDIQHISSYGLILEPKTQFYNMYRKGLLKLPNEDLGADMYQLLMSKIEQSPFHQYEISNFALDGHESEHNKVYWFNEEYYGFGAGASGYVDGVRYTNINPVNHYIKAINKESKAILVSNKPSLTERMEEEMFLGLRLNEGVSSSRFKKKFDQSIESVFGQTINNLKEKELIVEKNDAIALTKRGKVIGNEVFEAFLIND
>CP020713.1|AUJ53792.1|682932_683910_-|HrcA-family-transcriptional-regulator
MITDRQLSILNAIVEDYVDFGQPVGSKTLIERHNLNVSPATIRNEMKQLEDLNYIEKTHSSSGRSPSQLGFRYYVNRLLEQTSHQKTNKLRRLNQLLVENQYDVSSALTYFADELSNISQYTTLVVHPNHKQDIINNVHLIRANPNLVIMVIVFSSGHVEHVHLASDIPFSNDKLNTISNFVTNKLTEFNQNLQDDIVSFVQSEQEEIFINKLINTMNNHISNQSNSIYMGGKVKLIDALNESNVSSIQPILQYIESNRIAELLQDISSPNINVKIGNEIDDSLSDISIVTSQYHFDETLKGQIAVIGPTAMHYQNVIQLLNRIW
>CP020713.1|AUJ53791.1|682274_682901_-|nucleotide-exchange-factor-GrpE
MTNKDESVEKNTESTVEETNIKQNIDDSVEQAEESKGHLQDEAIEETSDENVIEEIDPKDQKINELQQLADENEEKYLRLYAEFENYKRRIQKENEINKTYQAQRVLTDILPAIDNIERALQIEGDDETFKSLQKGVQMVHESLINALKDNGLEVIKTEGEAFDPNIHQAVVQDDNPDFESGEITQELQKGYKLKDRVLRPSMVKVNQ
>CP020713.1|AUJ53790.1|680373_682206_-|molecular-chaperone-DnaK
MSKIIGIDLGTTNSCVTVLEGDEPKVIQNPEGSRTTPSVVAFKNGETQVGEVAKRQAITNPNTVQSIKRHMGTDYKVDIEGKSYTPQEISAMILQNLKNTAESYLGEKVDKAVITVPAYFNDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTDKDEKVLVFDLGGGTFDVSILELGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVAEFKKENGVDLSQDKMALQRLKDAAEKAKKDLSGVSQTQISLPFISAGENGPLHLEVNLTRSKFEELSDSLIRRTMEPTRQAMKDAGLTNSDIDEVILVGGSTRIPAVQEAVKKEIGKEPNKGVNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIEILGGRMNTLIERNTTIPTSKSQIYSTAVDNQPSVDVHVLQGERPMAADNKTLGRFQLTDIPPAERGKPQIEVTFDIDKNGIVNVTAKDLGTNKEQRITIQSSSSLSDEEIDRMVKDAEVNAEADKKRREEVDLRNEADSLVFQVEKTLTDLGENIGEEDKKSAEEKKDALKTALEGQDIEDIKSKKEELEKVIQELSAKVYEQAAQQQQQAQGANAGQNNDSTVEDAEFKEVKDDDKK
>CP020713.1|AUJ53789.1|679098_680238_-|molecular-chaperone-DnaJ
MAKRDYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQFGHDGPQGFGGQGFNGSDFGGFSGFGGGGFEDIFSSFFGGGRQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGDGAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTENKTVKLEVKVPEGVDNEQQIRLAGEGSPGVNGGPAGDLYVVFRVKPSETFIRDGDDIYYKLNVSFPQAALGDEIKIPTLNNEVMLTIPAGTQTGKQFRLKEKGIKNVHGYGYGDLYVDIKVVTPTKLTDRQKELMKEFAQLNGEEINEQPSNFKDRAKRFFKGE
>CP020713.1|AUJ53788.1|678156_679095_-|ribosomal-protein-L11-methyltransferase
MNWTELSIIINHEAVELATNILENHGLNGVVIEDSDDLINQPEDKYGEIYALKKEDYPDKGVRLKAYFNEMTYDDKLRQQIKDELLNLDEFDQHNIQFSEQIIAETDWENEWKNYFHPFRASKKFTIVPSWETYAKEADEELCIELDPGMAFGTGDHPTTSMCLKAIETYVLPQHSVIDVGTGSGILSIASHLIGVKRIKALDIDEMAVSVAKENFRRNHCETLIEAVPGNLLKDETEKFDIVIANILAHIIDEMIEDAYNTLNEGGYFITSGIIKEKYEGIQSHMERVGFKIISEQHDNGWVCLVGQKVSE
>CP020713.1|AUJ53787.1|677402_678155_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRYFIDQNADVSQRFFITKKEDIHHITNVMRYDVGSKIILTFNDQTVYLCEIADITSDKIEVDLKEKQNINTELPVDVTICSGLIKADKYEWLLQKATELGASSFIAVSMERSIVKLNEAKVAKKIERWQKIIKEAAEQSYRLVIPSIQFESNLKLICDTIDNYDYILIAYEEEAKDGELSNFKQTLQQFKAQDKVLMIFGPEGGLSENEISLFSNTSTVVGLGPRILRAETAPLYALSTISYEKELMG
>CP020713.1|AUJ53786.1|676049_677396_-|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MSTVAFHTLGCKVNHYETEAIWQLFKEANYERVDFEANADVFVINTCTVTNTGDKKSRQIIRRAIRQNPDAVICVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLGYIDEFRKERQPINGVGNIMKNRKYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQATQLVNSGYKEIVLTGIHTGGYGQDLKDYNLAQLLRDLETINGLERIRISSIEASQLTDEVIDVLERSTKVVRHLHIPLQSGSDTVLKRMRRKYTMDRFSERLTKLHKALPDLAVTSDVIVGFPGETEAEFQETYDFIVKHKFSELHVFPYSPRIGTPAARMDDQIDEEIKNERVHKLITLSNQLGKLYASKFDQDVLEVIPEEQGDTEGTLVGYADNYMKVQFEGDESLIGQIVKVKITQANYPLNEGQAIKVVDFATNKSDREVLV
>CP020713.1|AUJ53785.1|675580_675757_-|30S-ribosomal-protein-S21
MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK
>CP020713.1|AUJ55736.1|674654_675338_-|serine-protease
MTTILESTAGDTWVEQVSNIIVQPIFTLILTCLTFLGFVYQLYSKKINAAGIIATLSLLILFLGFLIQGNVNMHSILIFSIGVILVVIELFVVGAVIGIIGMILITISITTLGDNLLFMLANVIVALILTIVEWVILVKIFNRKIPFLDKVILKDSTNSESGYNSHDNRSHLVGKTAQTVTDLRPAGIIFCENERIDAVSDGNFILRNKTVKILEVEGTRVVVREVD
>CP020713.1|AUJ53793.1|685696_687520_-|elongation-factor-4
MDNEQRLKRRENIRNFSIIAHIDHGKSTLADRILENTKSVETRDMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGNTYTFHLIDTPGHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNELELMPVINKIDLPAAEPERVKQEIEDMIGLDQDDVVLASAKSNIGIEEILEKIVEVVPAPDGDPEAPLKALIFDSEYDPYRGVISSIRIVDGVVKAGDKIRMMATGKEFEVTEVGINTPKQLPVDELTVGDVGYIIASIKNVDDSRVGDTITLASRPASEPLQGYKKMNPMVYCGLFPIDNKNYNDLREALEKLQLNDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILRDGSEVTVDNPAQMPDRDKIDKIFEPYVRATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYELPLAEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLAKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE
>CP020713.1|AUJ53794.1|687865_688117_+|30S-ribosomal-protein-S20
MANIKSAIKRVKTTEKAEARNISQKSAMRTAVKNAKTAVSNNADNKNELVSLAVKLVDKAAQSNLIHSNKADRIKSQLMTANK
>CP020713.1|AUJ53795.1|688161_689136_-|DNA-polymerase-III-subunit-delta
MSDNIVAIYGDVPELVEKQSAEIISQFLKSDRDDFNFVKYNLYETEIAPIVEETLTLPFFSDKKAILVKNAYIFTGEKAPKDMAHNVDQLIEFIEKYDGENLIVFEIYQNKLDERKKLTKTLKKHARLKKIEQMSEEEIKKWIQSKLNENFKDIKRDALDLFIELTGINFNIVSQEIEKLILFLGDRPTINKQDVNQIINRSLEQNVFLLTEYIQKRKKEQAIHLVKDLITMKEEPIKLLALITSNYRLFYQCKILSQKGYSGQQIAKTIGVHPYRVKLALGQVRHYQLDELLNIVDACAETDYKLKSSYMDKQLILELFILSL
>CP020713.1|AUJ53796.1|689192_691340_-|DNA-internalization-related-competence-protein-ComEC/Rec2
MLSTFLFILLLYIAYRKNKIVYAPTSLFLIIFSSWYLHYSQQAIFNYINYIERTSQFNERAQVIQIQRQDSDTYKGRLSLKNEIYPFFLTDKKNFDLKKIESRNCIVKGQFKVNENKFVTLKLQSIVVQSCLESNRSNLIEKHKQFIMNRIYDSGIKFPDRIMALITGDVKEINEQFKERVKEIGIYHLLAVSGSHIAAIVFLIYQPLKRLNLPLFVIKGITIIVLTLFAQYTNYAPSAVRAIIMTTLVLLITKQIKIKGIQLLAFAFIIMFILNPLVVYDIGFQFSFIISFFIMLLFPFLQQLSKLQSLFIITFIAQLASFIVAIPNFHQLQWVGFLSNLIFVPYYSIILFPLSILFFITSHFIVGLTPLNYLVDLSFNFHDWLLDLFTRIKQSHFSVPKFNDWIFIIFIISVYYIFWLLAKRKYILVTFWTIIILTLLITFPTNSHHKITMLNVGQGDSILYEGGKNQNVLIDTGGKVIDDTKQPSYSISKYHILPTLNERGINELEYLILTHPHNDHIGEVEYIISHIKIKHIVIYNKGYSSNTLMLLSKLSHKYNIKLMDVRQVSSFKLGDSSFLFFDSFIPNSRDKNEYSIITMITYQNKKVLLMGDASKNNESLLLKKYNLPEIDILKVGHHGSKTSSSKEFIEMIKPKISLISSGKNNMYHLPNIEVVKRLQRIRSRIYNSQQNGQVTIDLDDNLKVDSNSYGNASGL
>CP020713.1|AUJ53797.1|691398_691860_-|ComE-operon-protein-2
MERIKWEEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLIEDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKRIYYAEDYHNHEYATKLLKQSGIEFKKIPFSPEYVAKYLTKG
>CP020713.1|AUJ53798.1|691951_692638_-|competence-protein-ComE
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKVEDVQVKDGDNSKNKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLEDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT
>CP020713.1|AUJ53799.1|692677_693394_-|SAM-dependent-methyltransferase
MSQYAEMSLVYDQLTQDQPYEKWFEIVKNHCKDESKILDIGCGTGSLTVQLEALGNVTGMDLSVDMLTVAAQKSANVNWLEGDMTSFDLQQQFDIITIFCDSLNYLQDETAVIETFINVYHHLTDSGVFIFDVHTVYKMMTLFNNQSYIDDKGDIFLAWDAVQGDLPLSVYHDMTFFIRHEDETYSRFDESHFQRTFDEKTYLSWLAQVGFKHVETFTDFNIDEHNEDAERLFFIAKK
>CP020713.1|AUJ53800.1|693396_693750_-|ribosome-silencing-factor-RsfS
MNSQELLAIAVDAIDNKKGEDTISLEMKGISDMTDYFVVTHGNNERQVQAIARAVKEVANEQNIEVKRMEGYNEARWILIDLADVVVHVFHKDERNYYNIEKLYQDAPLESYGQVAY
>CP020713.1|AUJ53801.1|693750_694335_-|HAD-family-hydrolase
MNIEKAKRLAKEKLPEKRYNHSLRVSETAIKLAEIYDGDTSKVELAGVLHDFCKYDDLGKMYQIVRQYELGNDLLSYGSEILHGPVCAAIMEHEYGINDEEVLMAIKYHTTGRQQMTKTEKLIFIADYIEPGRTIPGVDDIRDMAYNQGSLDKTIYEISKRTVLFLIQKDITVYNKTIDCLNYYNYSDERIKDD
>CP020713.1|AUJ53802.1|694324_694894_-|nicotinate-nicotinamide-nucleotide-adenylyltransferase
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHHDFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP020713_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020713_5

2253986-2254075

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGCCTGTAGAATTTCTTTT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP020713_5

>merge|CP020713|5|2253986-2254075|CRISPRCasFinder
CCCCAACTTGCATTGCCTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCACACCCCAACTTGCATTGCCTGTAGAATTTCTTTT

>CP020713|5|4|2253986-2254075|CRISPRCasFinder
CCCCAACTTGCATTGCCTGTAGAATTTCTTTT	CGAAATTCTCTGTGTTGGGGCCCACA
CCCCAACTTGCATTGCCTGTAGAATTTCTTTT

Protein	Signature genes	Signature genes Name	Protein_function
CP020713.1\|AUJ55797.1\|2255738_2256152_-\|hypothetical-protein	unknown	unknown	unknown
CP020713.1\|AUJ55281.1\|2261543_2262074_-\|permease	unknown	unknown	gnl\|CDD\|378690
CP020713.1\|AUJ55279.1\|2259604_2260159_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|99834
CP020713.1\|AUJ55272.1\|2253093_2253852_-\|methionine-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
CP020713.1\|AUJ55265.1\|2247762_2248227_+\|protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|319971
CP020713.1\|AUJ55276.1\|2257109_2258423_-\|UDP-N-acetylmuramate--alanine-ligase	unknown	unknown	gnl\|CDD\|223840
CP020713.1\|AUJ55275.1\|2256376_2257108_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
CP020713.1\|AUJ55274.1\|2256180_2256291_-\|hypothetical-protein	unknown	unknown	unknown
CP020713.1\|AUJ55268.1\|2250115_2250745_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP020713.1\|AUJ55280.1\|2260226_2261297_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP020713.1\|AUJ55278.1\|2259296_2259389_-\|hypothetical-protein	unknown	unknown	unknown
CP020713.1\|AUJ55271.1\|2252490_2252877_-\|hypothetical-protein	unknown	unknown	unknown
CP020713.1\|AUJ55266.1\|2248233_2248509_+\|hypothetical-protein	unknown	unknown	unknown
CP020713.1\|AUJ55796.1\|2247415_2247616_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227177
CP020713.1\|AUJ55277.1\|2258714_2259215_+\|non-heme-ferritin	unknown	unknown	gnl\|CDD\|224445
CP020713.1\|AUJ55273.1\|2254380_2255367_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226614
CP020713.1\|AUJ55270.1\|2251774_2252476_-\|transporter	unknown	unknown	gnl\|CDD\|227100
CP020713.1\|AUJ55269.1\|2250734_2251778_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
CP020713.1\|AUJ55267.1\|2248786_2250004_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224214
CP020713.1\|AUJ55264.1\|2246156_2247413_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|376723

Protein	Function_ID	Function_description	E-value
CP020713.1\|AUJ55281.1\|2261543_2262074_-\|permease	gnl\|CDD\|378690	pfam11667, DUF3267, Putative zincin peptidase. This family of proteins has a conserved HEXXH motif, suggesting the members are putative peptidases of zincin fold.	1.92343e-11
CP020713.1\|AUJ55279.1\|2259604_2260159_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|99834	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex.	3.15947e-75
CP020713.1\|AUJ55272.1\|2253093_2253852_-\|methionine-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.9498e-126
CP020713.1\|AUJ55276.1\|2257109_2258423_-\|UDP-N-acetylmuramate--alanine-ligase	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	3.37755e-99
CP020713.1\|AUJ55264.1\|2246156_2247413_-\|aminopeptidase	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
CP020713.1\|AUJ55275.1\|2256376_2257108_-\|glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	3.33663e-121
CP020713.1\|AUJ55268.1\|2250115_2250745_-\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.75115e-79
CP020713.1\|AUJ55280.1\|2260226_2261297_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP020713.1\|AUJ55796.1\|2247415_2247616_-\|hypothetical-protein	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	9.24488e-25
CP020713.1\|AUJ55277.1\|2258714_2259215_+\|non-heme-ferritin	gnl\|CDD\|224445	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism].	4.6035e-74
CP020713.1\|AUJ55273.1\|2254380_2255367_+\|hypothetical-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	6.20478e-76
CP020713.1\|AUJ55270.1\|2251774_2252476_-\|transporter	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	9.42019e-79
CP020713.1\|AUJ55269.1\|2250734_2251778_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	6.78722e-72
CP020713.1\|AUJ55267.1\|2248786_2250004_+\|hypothetical-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	2.45634e-85
CP020713.1\|AUJ55265.1\|2247762_2248227_+\|protein-tyrosine-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	3.39151e-65

>CP020713.1|AUJ55272.1|2253093_2253852_-|methionine-aminopeptidase
MIVKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLHEAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHTVIVTKDGPILTTKIEEE
>CP020713.1|AUJ55271.1|2252490_2252877_-|hypothetical-protein
MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMCYLITKKEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA
>CP020713.1|AUJ55270.1|2251774_2252476_-|transporter
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFVFLLLLIVRYLIHKFKPKKVVATDEVMTSPSFIKQKWFGEQRTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVILPVNYNINLHVAAFYGSTYVNEKSYKVENNNIHIEEMMKPDNYTVNIYVSTFIGDVEVIYR
>CP020713.1|AUJ55269.1|2250734_2251778_-|two-component-sensor-histidine-kinase
MNHYIRTIGSMLILVYSMLAAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIILLCIIVGSVLAYKINQQNDWIKTQIERSMEGETVGINDQNIEIYSETLDLYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETKLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVVHEIQDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNKDDYLLLRIQDNGKGFNVDEKLEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEDSYDD
>CP020713.1|AUJ55268.1|2250115_2250745_-|DNA-binding-response-regulator
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVLMLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>CP020713.1|AUJ55267.1|2248786_2250004_+|hypothetical-protein
MSKKDHSSSKYLNSVKEAQEESKKKNKSNPKIDVDRTYIEPQQFQSKKPKKDDQVFFLSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLAMFPMLLFLLTLLPFFNIKQSQITNMLSNAPAETSTLIKSVIGDITQNSSGGLLSIGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVVFTVVMGVVFVVALALPTLGSVISHFLFGPLGFDEQVKWIFNLIRIVLPIIIIFIVFIVLYSVAPNVKTKLKSVLPGAVFTSIIWLAGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRSVIKGKTPEEAALEHDDNNKNHYNENTRYEYDEDNNATHQRTYHVDEHPSDTYPEDDKNIKDKIVDKLKKD
>CP020713.1|AUJ55266.1|2248233_2248509_+|hypothetical-protein
MENKFVPGILIGAVIGGAISLADKSTRQALVQSVKDAKNGNRTRKPSKVSKIKDEVLYWKDVVEEIRRNNPELERSLKDAKETFVNRKNQR
>CP020713.1|AUJ55265.1|2247762_2248227_+|protein-tyrosine-phosphatase
MVDVAFVCLGNICRSPMAEAIMRQRLKDRNIHDIKVHSRGTGSWNLGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>CP020713.1|AUJ55796.1|2247415_2247616_-|hypothetical-protein
MTNEEKVLAIREKLNIVNQGLLDPEKYKNANEEELTDIYDFVQSRERLSPSEVTAIADALGQLRHD
>CP020713.1|AUJ55264.1|2246156_2247413_-|aminopeptidase
MGILTNYKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVYSDPTLKRLKFENESVEHFANHELKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKLQAFQQQNARAFKGYMESVQKNQFPWVVAAFPSKAWAKRVYPELSVEEAYIKFIDEVFDIVRIDGNDPVENWRQHIANLSVYAQKLQQKNYHALHYVSEGTDLTVGLAKNHIWEDATSYVNGKEQAFIANIPTEEVFTAPDRNRVDGYVTNKLPLSYNGTIIDQFKLMFKDGEIIDFSAEKGEAVLKDLINTDEGSRRLGEVALVPDDSPISNRNTIFYNTLFDENAACHLAIGSAYAFNIQGGTEMTVEEKIASGLNDSNVHVDFMIGSSDLTIYGIFEDGSKELVFENGNWASTF
>CP020713.1|AUJ55273.1|2254380_2255367_+|hypothetical-protein
MNDQWYKHLIGARTIKTGIAIFLTAVFCMALDLTPIYAILTAVVTIEPTAKASLIKGYRRLPATVIGAGFAVLFTYLFGDQSPFTYALSATFTILFCTKLKLQVGTNVAVLTSLAMIPGIHDAYIFNFLSRTLTAIIGLVTSGLINFMVFPPKYYGQVEEKLSKTDALMYKLFYNRCQELILSRLQSDKSEKAYKNIFNLNNQVETLISYQRDELSYHKKKECDWKLLNQLTKRAYTNRLFITHLSNIIYLPKNTRVNFSGDEKMALLKISSSIKDIFYDGSFKREDDSVETLRSTIKALEISGENQIKSHILYEVLMIYRLLDSRYA
>CP020713.1|AUJ55797.1|2255738_2256152_-|hypothetical-protein
MKPTKVILRDASYLHSKTSITFILKDVVIEEDNKIYYFDTSATFEDQEVKFEFALFDSDMDNLKHMDYDNPVTEIYFIEPDLHFTIIDFNQELLCIYIDFDSGLRHSNMATESGISLRINVAKSDFTKFINELASLH
>CP020713.1|AUJ55274.1|2256180_2256291_-|hypothetical-protein
MDGNNQIDVCFFVLVNNYYTMSIYPRIINSNGDYAT
>CP020713.1|AUJ55275.1|2256376_2257108_-|glutamine-amidotransferase
MHELTIYHFMSDKLNLYSDIGNIIALRQRAKKRNIKVNVVEINETEGITFDECDIFFIGGGSDREQALATKELSKIKTPLKEAIEDGMPGLTICGGYQFLGKKYITPDGTELEGLGILDFYTESKTNRLTGDIVIESDTFGTIVGFENHGGRTYHDFGTLGHVTFGYGNNDEDKKEGIHYKNLLGTYLHGPILPKNYEITDYLLEKACERKGIPFEPKEIDNEAEIQAKQVLIDRANRQKKSR
>CP020713.1|AUJ55276.1|2257109_2258423_-|UDP-N-acetylmuramate--alanine-ligase
MRQWTAIHLAKLARKASRAVGKRGTDLPGQIARKVDTDILRKLAEQVDDIVFISGTNGKTTTSNLIGHTLKANNIQIIHNNEGANMAAGITSAFIMQSTPKTKIAVIEIDEGSIPRVLKEVTPSMMVFTNFFRDQMDRFGEIDIMVNNIAETISNKGIKLLLNADDPFVSRLKIASDTIVYYGMKAHAHEFEQSTMNESRYCPNCGRLLQYDYIHYNQIGHYHCQCGFKREQAKYEISSFDVAPFLHLNINDEKYDMKIAGDFNAYNALAAYSVLRELGLNEQTIKNGFETYTSDNGRMQYFKKERKEAMINLAKNPAGMNASLSVGEQLEGEKVYVISLNDNAADGRDTSWIYDADFEKLSKQQIEAIIVTGTRAEELQLRLKLAEVEVPIIVERDIYKATAKTMDYKGFTVAIPNYTSLAPMLEQLNRSFEGGQS
>CP020713.1|AUJ55277.1|2258714_2259215_+|non-heme-ferritin
MLSKNLLEALNDQMNHEYFAAHAYMAMAAYCDKESYEGFANFFIQQAKEERFHGQKIYNYINDRGAHAEFRAVSAPKIDFSSILETFKDSLSQEQEVTRRFYNLSEIARQDKDYATISFLNWFLDEQVEEESMFETHINYLTRIGDDSNALYLYEKELGARTFDEE
>CP020713.1|AUJ55278.1|2259296_2259389_-|hypothetical-protein
MTKNTIISLENEKTQINDSENESSDLRKAK
>CP020713.1|AUJ55279.1|2259604_2260159_+|DNA-polymerase-III-subunit-epsilon
MIQDAFVALDFETANGKRTSICSVGMVKVIDSQITETFHTLVNPQDYFSQQNIKVHGIQPEDVENAPTFDYVFPYMMQFIADLPVVAHNAAFDMNVLHQSIQNIGLPTPNLTYFCSYQLAKRTVDSYRYGLKHMMEFYQLDFHGHHDALNDAKACAMITFRLLKNYKNLTYVTNIYGKNLKDKG
>CP020713.1|AUJ55280.1|2260226_2261297_-|DNA-polymerase-IV
MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASSRGVVSTASYEARKYGVHSAMPMSQAHKLCPNGYFVTSNFGAYRETSAQIMSIFRSYTDKVEPMSLDEAYLDITELVRPDLPASKIAQYIRKDILEQTHLTASAGVSYNKFLAKLASGMNKPDGLTVIDYQNVHDILMTLDIGDFPGVGKASKKVMHDNGIFNGRDLYEKTEFELIRLFGKRGRGLYNKARGIDHSEVKSSRVRKSVGTERTFATDVNDDEEILRKVWELSGKTAERLNKLQKSAKTVTVKIKTYQFETLSKQMSLRDSVSSEEDIYNIAYLLYNDLKDPDVPIRLIGVTVGNLEQSTYKNMTIYDFI
>CP020713.1|AUJ55281.1|2261543_2262074_-|permease
MHKIDLTTNNFQMRRFIILQLVIALFVILFTYKWALGVTAVVDQNIIINLVYGFAGFIILLILHELIHRALFLLFKKDSKPMFNIKKDRILFQTADACFNKWQFSIIMLSPLFLLSTGLLILIKVFGYSSLIFMFSMHTAYCFIDILLVALTISSSFKYVQQDEDSIYLYHQKPTQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP020713_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020713_6

2556522-2556611

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP020713_6

>merge|CP020713|6|2556522-2556611|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCT

>CP020713|6|5|2556522-2556611|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP020713.1\|AUJ55571.1\|2559471_2560254_-\|iron-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
CP020713.1\|AUJ55575.1\|2566688_2567123_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP020713.1\|AUJ55561.1\|2551654_2552593_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
CP020713.1\|AUJ55559.1\|2549348_2550722_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
CP020713.1\|AUJ55567.1\|2557483_2557666_-\|hypothetical-protein	unknown	unknown	unknown
CP020713.1\|AUJ55573.1\|2562971_2564510_+\|PTS-mannitol-transporter-subunit-IICBA	unknown	unknown	gnl\|CDD\|225123
CP020713.1\|AUJ55568.1\|2557730_2557889_+\|integrase	unknown	unknown	unknown
CP020713.1\|AUJ55574.1\|2564544_2566677_+\|PTS-lactose-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226234
CP020713.1\|AUJ55563.1\|2553845_2554166_+\|transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP020713.1\|AUJ55562.1\|2553028_2553694_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|187554
CP020713.1\|AUJ55569.1\|2558324_2558417_+\|erm-Leader-peptide	unknown	unknown	unknown
CP020713.1\|AUJ55572.1\|2560485_2562291_-\|glutamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
CP020713.1\|AUJ55556.1\|2547004_2547715_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP020713.1\|AUJ55558.1\|2548478_2548892_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225556
CP020713.1\|AUJ55570.1\|2558546_2559404_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
CP020713.1\|AUJ55560.1\|2551393_2551624_-\|hypothetical-protein	unknown	unknown	unknown
CP020713.1\|AUJ55565.1\|2555413_2556505_+\|transcriptional-regulator	unknown	unknown	unknown
CP020713.1\|AUJ55566.1\|2556946_2557051_-\|hypothetical-protein	unknown	unknown	unknown
CP020713.1\|AUJ55564.1\|2554167_2555148_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
CP020713.1\|AUJ55557.1\|2547835_2548279_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854

Protein	Function_ID	Function_description	E-value
CP020713.1\|AUJ55571.1\|2559471_2560254_-\|iron-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	8.27306e-106
CP020713.1\|AUJ55561.1\|2551654_2552593_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP020713.1\|AUJ55559.1\|2549348_2550722_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
CP020713.1\|AUJ55573.1\|2562971_2564510_+\|PTS-mannitol-transporter-subunit-IICBA	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP020713.1\|AUJ55574.1\|2564544_2566677_+\|PTS-lactose-transporter-subunit-IIB	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.17174e-68
CP020713.1\|AUJ55575.1\|2566688_2567123_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP020713.1\|AUJ55562.1\|2553028_2553694_-\|oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.27122e-47
CP020713.1\|AUJ55572.1\|2560485_2562291_-\|glutamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP020713.1\|AUJ55556.1\|2547004_2547715_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
CP020713.1\|AUJ55558.1\|2548478_2548892_-\|hypothetical-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
CP020713.1\|AUJ55570.1\|2558546_2559404_-\|HAD-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.00207e-59
CP020713.1\|AUJ55563.1\|2553845_2554166_+\|transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
CP020713.1\|AUJ55564.1\|2554167_2555148_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.20197e-108
CP020713.1\|AUJ55557.1\|2547835_2548279_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67

>CP020713.1|AUJ55565.1|2555413_2556505_+|transcriptional-regulator
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKETTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP020713.1|AUJ55564.1|2554167_2555148_+|cation-transporter
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHAH
>CP020713.1|AUJ55563.1|2553845_2554166_+|transcriptional-regulator
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP020713.1|AUJ55562.1|2553028_2553694_-|oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>CP020713.1|AUJ55561.1|2551654_2552593_-|mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP020713.1|AUJ55560.1|2551393_2551624_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP020713.1|AUJ55559.1|2549348_2550722_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP020713.1|AUJ55558.1|2548478_2548892_-|hypothetical-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>CP020713.1|AUJ55557.1|2547835_2548279_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP020713.1|AUJ55556.1|2547004_2547715_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>CP020713.1|AUJ55566.1|2556946_2557051_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>CP020713.1|AUJ55567.1|2557483_2557666_-|hypothetical-protein
MIIFRFKVNAFFPVKLCLMIRFCLESCCIFRRHLLITFHNIRSKFIMFKYISSKCIICTG
>CP020713.1|AUJ55568.1|2557730_2557889_+|integrase
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>CP020713.1|AUJ55569.1|2558324_2558417_+|erm-Leader-peptide
MTYGSIVAILCALFVIFFIPYMEKKDKKKK
>CP020713.1|AUJ55570.1|2558546_2559404_-|HAD-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITTFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIEHFGIHQDETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>CP020713.1|AUJ55571.1|2559471_2560254_-|iron-ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKNISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDEEVRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPMLAMIYVTHFIEEITSNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP020713.1|AUJ55572.1|2560485_2562291_-|glutamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP020713.1|AUJ55573.1|2562971_2564510_+|PTS-mannitol-transporter-subunit-IICBA
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGANQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDNPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP020713.1|AUJ55574.1|2564544_2566677_+|PTS-lactose-transporter-subunit-IIB
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP020713.1|AUJ55575.1|2566688_2567123_+|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP020713_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP020713_8

2603360-2603449

Orphan

Consensus_repeat	Method
TGATTGAGAAGTCAGTCGAAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP020713_8

>merge|CP020713|8|2603360-2603449|CRISPRCasFinder
TGATTGAGAAGTCAGTCGAAAAACTATTGCAAAAGAAAAACGATTATGTATAATAAAGTTATAAATTGATTGAGAAGTCAGTCAAAAACG

>CP020713|8|7|2603360-2603449|CRISPRCasFinder
TGATTGAGAAGTCAGTCGAAAAAC	TATTGCAAAAGAAAAACGATTATGTATAATAAAGTTATAAAT
TGATTGAGAAGTCAGTCAAAAACG

Protein	Signature genes	Signature genes Name	Protein_function
CP020713.1\|AUJ55594.1\|2596186_2596276_-\|hypothetical-protein	unknown	unknown	unknown
CP020713.1\|AUJ55592.1\|2594565_2594700_+\|delta-hemolysin	unknown	unknown	gnl\|CDD\|173213
CP020713.1\|AUJ55603.1\|2603688_2604006_+\|excisionase	unknown	unknown	gnl\|CDD\|200128
CP020713.1\|AUJ55600.1\|2601432_2602605_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP020713.1\|AUJ55599.1\|2599747_2601364_+\|molecular-chaperone-GroEL	unknown	unknown	gnl\|CDD\|234573
CP020713.1\|AUJ55606.1\|2604353_2604674_+\|pathogenicity-island-protein	unknown	unknown	gnl\|CDD\|369323
CP020713.1\|AUJ55598.1\|2599387_2599672_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
CP020713.1\|AUJ55605.1\|2604141_2604351_+\|pathogenicity-island-protein	unknown	unknown	unknown
CP020713.1\|AUJ55596.1\|2597264_2598446_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368653
CP020713.1\|AUJ55593.1\|2595296_2596082_-\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143607
CP020713.1\|AUJ55601.1\|2602618_2603293_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
CP020713.1\|AUJ55608.1\|2605623_2607324_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227806
CP020713.1\|AUJ55607.1\|2604740_2605610_+\|mobile-element-associated-protein	unknown	unknown	gnl\|CDD\|214926
CP020713.1\|AUJ55611.1\|2609117_2609822_-\|toxin	unknown	unknown	gnl\|CDD\|171853
CP020713.1\|AUJ55610.1\|2608030_2608672_+\|pathogenicity-island-protein	unknown	unknown	gnl\|CDD\|374630
CP020713.1\|AUJ55602.1\|2603465_2603684_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
CP020713.1\|AUJ55597.1\|2598469_2599213_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
CP020713.1\|AUJ55604.1\|2604002_2604149_+\|pathogenicity-island-protein	unknown	unknown	unknown
CP020713.1\|AUJ55595.1\|2596442_2597039_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
CP020713.1\|AUJ55609.1\|2607653_2608034_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP020713.1\|AUJ55592.1\|2594565_2594700_+\|delta-hemolysin	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	8.25732e-15
CP020713.1\|AUJ55608.1\|2605623_2607324_+\|hypothetical-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	1.18395e-165
CP020713.1\|AUJ55600.1\|2601432_2602605_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.55725e-47
CP020713.1\|AUJ55599.1\|2599747_2601364_+\|molecular-chaperone-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
CP020713.1\|AUJ55606.1\|2604353_2604674_+\|pathogenicity-island-protein	gnl\|CDD\|369323	pfam07342, DUF1474, Protein of unknown function (DUF1474). This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus aureus. The function of this family is unknown.	1.63366e-18
CP020713.1\|AUJ55598.1\|2599387_2599672_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.94304e-45
CP020713.1\|AUJ55603.1\|2603688_2604006_+\|excisionase	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	1.26138e-17
CP020713.1\|AUJ55593.1\|2595296_2596082_-\|carbon-nitrogen-hydrolase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	9.57254e-127
CP020713.1\|AUJ55601.1\|2602618_2603293_-\|transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.58614e-10
CP020713.1\|AUJ55607.1\|2604740_2605610_+\|mobile-element-associated-protein	gnl\|CDD\|214926	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.	1.21323e-15
CP020713.1\|AUJ55611.1\|2609117_2609822_-\|toxin	gnl\|CDD\|171853	PRK13038, PRK13038, superantigen-like protein; Reviewed.	1.45634e-09
CP020713.1\|AUJ55596.1\|2597264_2598446_+\|hypothetical-protein	gnl\|CDD\|368653	pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP). This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of Trypanosoma brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated.	5.3385e-07
CP020713.1\|AUJ55602.1\|2603465_2603684_+\|transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	9.85461e-11
CP020713.1\|AUJ55597.1\|2598469_2599213_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.67124e-11
CP020713.1\|AUJ55595.1\|2596442_2597039_-\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	2.49787e-115
CP020713.1\|AUJ55610.1\|2608030_2608672_+\|pathogenicity-island-protein	gnl\|CDD\|374630	pfam16560, SAPI, Putative mobile pathogenicity island. SAPI is a family of putative Gram-positive mobile pathogenicity island proteins. SAPIs are responsible for many superantigen-related diseases in humans as they carry two or more superantigens.	1.06227e-111

>CP020713.1|AUJ55601.1|2602618_2603293_-|transcriptional-regulator
MIRNRLSELLSERGLKISRVAKDVKIARSSLTSMAQNDSEMIRYDAIDKLCSYLHISPSEFFEHNPINFDFTFDEEPNYKINDVFEGFEVTANITHAFSIENFDFEILVDVELDNRQKLNFDLDVSYKETEKITNSQHRFIFTIKNEDENIGLKKYVDSLSAGLKNLLFKKINQKLSGYVSEIIVKNIDDIEELFPNKGEKSTTLHKEILQTDSRLSSDIFKEY
>CP020713.1|AUJ55600.1|2601432_2602605_-|site-specific-integrase
MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPSTSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKFSKLMENVSKDLF
>CP020713.1|AUJ55599.1|2599747_2601364_+|molecular-chaperone-GroEL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>CP020713.1|AUJ55598.1|2599387_2599672_+|co-chaperone-GroES
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>CP020713.1|AUJ55597.1|2598469_2599213_-|CPBP-family-intramembrane-metalloprotease
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVLTQIYGGQQVSPNTEKLIIIARKIPIFIFFVSIIGPLLEEYVFRKVIFGELFNAIKGNRIVAFIIATTVSSLIFALAHNDFKFIPVYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>CP020713.1|AUJ55596.1|2597264_2598446_+|hypothetical-protein
MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNSEMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNPSPNPKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDNPKPNPDPKPDPNKPNPNPSPDPDQHGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>CP020713.1|AUJ55595.1|2596442_2597039_-|nitroreductase-family-protein
MTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSNEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>CP020713.1|AUJ55594.1|2596186_2596276_-|hypothetical-protein
MLEPTPTCIVCRNWCSNFSMLGPHQLLSI
>CP020713.1|AUJ55593.1|2595296_2596082_-|carbon-nitrogen-hydrolase
MKVQIYQLPIIFGDSSKNEAQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESSDILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>CP020713.1|AUJ55592.1|2594565_2594700_+|delta-hemolysin
MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK
>CP020713.1|AUJ55602.1|2603465_2603684_+|transcriptional-regulator
MTILANTRKFKEAMFLKGFNLSDLSRETGVGISYLSQIINGKKIPSPKLAKKMAEVLQVEVNELFEFEVKEA
>CP020713.1|AUJ55603.1|2603688_2604006_+|excisionase
MFNINIDEDEARELLEQAINARVDELAKEKYFMTYKELANYLNLSKPTIEELLINNGMKYYMVGSTYRFKKSDVDEFMEQLTAHMNIQNNDFKQVNIKKLLEARQ
>CP020713.1|AUJ55604.1|2604002_2604149_+|pathogenicity-island-protein
MKIYLTYICLVSLLTILLLAISNMYVAFSVYAWLITLGCNLTGGLENE
>CP020713.1|AUJ55605.1|2604141_2604351_+|pathogenicity-island-protein
MNNEQKEVIEHLVYQLELSVMNNLESYEHTEYVNGIEVVSEISREKHLELIMKWCAQELKNNFQLEKGE
>CP020713.1|AUJ55606.1|2604353_2604674_+|pathogenicity-island-protein
MNWEIKDLMCDIEVIKQKINDVATKHAWFVEDRFVKNELETKREHINFSASYLEHRIQNEHTVELLQVYLKEFDELIQKFHEIEKASSDVSLATESDDAKKLKITE
>CP020713.1|AUJ55607.1|2604740_2605610_+|mobile-element-associated-protein
MNEIKLEYDTHVSVVHYESLDSRSFKSFSKPEWSKLVNKLSVPIEANYKYARGVAVYGDIKDGANDHGETIKKHRNDVNVIYRDVIVLDYDEINDLKQLHEAISSVLSSVAWYWHTSFSHTTEQARIRLYIPLNERISADDYRKYTKVLANKIGHKVDEGSYQPSRCFALPVIQKGHIFIKRVNDCPIMNVDMLEQWSKEFEQSNASPNVIGYTRRDSEYWRELCFGTTEGNRNNALASLIGHLLRCHVNDYIVYSFALLWGQFACKPPMKEQEINATFQSILNKHYNN
>CP020713.1|AUJ55608.1|2605623_2607324_+|hypothetical-protein
METGKSDVLDKIEKINKKDSALQEIIPKGYEIEHHQCGVALYQLIPSKKEGEPDKKVFITNTIPQITERFEDIESNEVSFNMLFYDNKTPVNIAVSAEEISDSRQLLKLVNKKLDVTSSTSTKLVDYINVSKRYNPPLNVKVATRLGHVKGYFIYPYQEVMKDSNIKLFSNDKGFQKLIDSFQSKGTLEGYSKKVFGQIKDLPMVMVMLYASLGSVLLREFGLQPFIVEISGSTSTGKTFTLNLVSSVWGTSDLITTWSSTQNSIESMASFLNSFPMFKDDTRNTHPKFVTSATYNFSSGESKSRSNINLTLNAKKEWRNILISTGESSIANMADEKAGVSARVVTLQDQPYPDNFDFTTLDKSFRENYGTLGLAFIKQYESKKDVYKNAFESYQRYFNQKGSNEIMQRLGRAFALLQVTGEVLNDIDGFEHDHFKIIEQTYDSMVKNNKTIDKPKQLLEELLQYLDANRNNIAGDGYSSVKNGDTKAIYKRDYLCILGQTVYDKLGHEMQTITGQWDKKGYLITSKDRIQKEVRFNSQKNRGYAIKDEIIKELGFDFSNSHNPYN
>CP020713.1|AUJ55609.1|2607653_2608034_+|hypothetical-protein
MDKEQLKIYIYDYVKEYKEIPIYQLEDLFKEINHDYIGRTSITHDKDENVVFWSGWNKITMFALIELVKSEQLDLVYRGSFVMRYLLDGRVPNLPLAICYPEDGQQTDVLSWVPMVLRINKEEKIK
>CP020713.1|AUJ55610.1|2608030_2608672_+|pathogenicity-island-protein
MNIETIVNEFETRAGTLLRYYTGLLEHSKVQPCCFKLYNDPFDMVYVVMNNKLFGHVYIKDCKVRKSFELASPKHTEGLIRSIEGHYVGYELHDGKQLSISDMMASQLFEDEYFMYGLQTYVESNNSDVFEYLENGFDTDTLEGIQSSNTDVIANIEMLYQLATGINEPARELAEGLKLVTEFVQDENATQEDYKALERKLNDLKASYYSLSK
>CP020713.1|AUJ55611.1|2609117_2609822_-|toxin
MNKKLLMKFFIVSPLLLATIATDFTPVPLSSNQIIKTAKASTNDNIKDLLDWYSSGSDAFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPTFSKGEKVDLNTKRTKKSQHTSEGTWIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	190416-190446	0	1.0
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	393286-393316	0	1.0
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	508358-508388	0	1.0
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	764439-764469	0	1.0
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	1703168-1703198	0	1.0
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	1703226-1703256	0	1.0
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	1997508-1997538	0	1.0
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	2002942-2002972	0	1.0
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	2255458-2255488	0	1.0
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	2654539-2654569	0	1.0
CP020713_5	5.1\|2254018\|26\|CP020713\|CRISPRCasFinder	2254018-2254043	26	CP020713.1	1703188-1703213	0	1.0
CP020713_2	2.1\|685501\|29\|CP020713\|CRISPRCasFinder	685501-685529	29	CP020713.1	915137-915165	1	0.966
CP020713_2	2.1\|685501\|29\|CP020713\|CRISPRCasFinder	685501-685529	29	CP020713.1	2002873-2002901	1	0.966
CP020713_2	2.1\|685501\|29\|CP020713\|CRISPRCasFinder	685501-685529	29	CP020713.1	2010082-2010110	1	0.966
CP020713_2	2.1\|685501\|29\|CP020713\|CRISPRCasFinder	685501-685529	29	CP020713.1	2254102-2254130	1	0.966
CP020713_2	2.1\|685501\|29\|CP020713\|CRISPRCasFinder	685501-685529	29	CP020713.1	2264736-2264764	1	0.966
CP020713_3	3.1\|1121375\|29\|CP020713\|CRISPRCasFinder	1121375-1121403	29	CP020713.1	190370-190398	1	0.966
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	108980-109010	1	0.968
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	190358-190388	1	0.968
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	717944-717974	1	0.968
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	1208883-1208913	1	0.968
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	1474624-1474654	1	0.968
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	1741745-1741775	1	0.968
CP020713_5	5.1\|2254018\|26\|CP020713\|CRISPRCasFinder	2254018-2254043	26	CP020713.1	190378-190403	1	0.962
CP020713_5	5.1\|2254018\|26\|CP020713\|CRISPRCasFinder	2254018-2254043	26	CP020713.1	2654524-2654549	1	0.962
CP020713_2	2.1\|685501\|29\|CP020713\|CRISPRCasFinder	685501-685529	29	CP020713.1	2138094-2138122	2	0.931
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	2513533-2513563	2	0.935
CP020713_4	4.1\|1837757\|31\|CP020713\|CRISPRCasFinder	1837757-1837787	31	CP020713.1	2513588-2513618	2	0.935

1. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 190416-190446, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

2. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 393286-393316, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

3. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 508358-508388, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

4. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 764439-764469, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

5. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 1703168-1703198, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

6. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 1703226-1703256, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

7. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 1997508-1997538, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

8. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 2002942-2002972, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

9. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 2255458-2255488, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

10. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 2654539-2654569, mismatch: 0, identity: 1.0

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattctct	Protospacer
*******************************

11. spacer 5.1|2254018|26|CP020713|CRISPRCasFinder matches to position: 1703188-1703213, mismatch: 0, identity: 1.0

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggcccaca	Protospacer
**************************

12. spacer 2.1|685501|29|CP020713|CRISPRCasFinder matches to position: 915137-915165, mismatch: 1, identity: 0.966

accccaacttgcacattatagtaagctga	CRISPR spacer
accccaacttgcacattattgtaagctga	Protospacer
******************* *********

13. spacer 2.1|685501|29|CP020713|CRISPRCasFinder matches to position: 2002873-2002901, mismatch: 1, identity: 0.966

accccaacttgcacattatagtaagctga	CRISPR spacer
accccaacttgcacattatcgtaagctga	Protospacer
******************* *********

14. spacer 2.1|685501|29|CP020713|CRISPRCasFinder matches to position: 2010082-2010110, mismatch: 1, identity: 0.966

accccaacttgcacattatagtaagctga	CRISPR spacer
accccaacttgcacattattgtaagctga	Protospacer
******************* *********

15. spacer 2.1|685501|29|CP020713|CRISPRCasFinder matches to position: 2254102-2254130, mismatch: 1, identity: 0.966

accccaacttgcacattatagtaagctga	CRISPR spacer
accccaacttgcacattattgtaagctga	Protospacer
******************* *********

16. spacer 2.1|685501|29|CP020713|CRISPRCasFinder matches to position: 2264736-2264764, mismatch: 1, identity: 0.966

accccaacttgcacattatagtaagctga	CRISPR spacer
accccaacttgcacattattgtaagctga	Protospacer
******************* *********

17. spacer 3.1|1121375|29|CP020713|CRISPRCasFinder matches to position: 190370-190398, mismatch: 1, identity: 0.966

tttcttttcgaaattctctatgttggggt	CRISPR spacer
tttcttttcgaaattctctgtgttggggt	Protospacer
*******************.*********

18. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 108980-109010, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcatttcgaaattctct	Protospacer
**************** **************

19. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 190358-190388, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttcttttcgaaattctct	Protospacer
***.***************************

20. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 717944-717974, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttctttacgaaattctct	Protospacer
******************* ***********

21. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 1208883-1208913, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttctttacgaaattctct	Protospacer
******************* ***********

22. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 1474624-1474654, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcttgtagaatttcttttcgaaattctct	Protospacer
****.**************************

23. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 1741745-1741775, mismatch: 1, identity: 0.968

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgcctgtagaatttcttttagaaattctct	Protospacer
******************** **********

24. spacer 5.1|2254018|26|CP020713|CRISPRCasFinder matches to position: 190378-190403, mismatch: 1, identity: 0.962

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctgtgttggggtccaca	Protospacer
********************.*****

25. spacer 5.1|2254018|26|CP020713|CRISPRCasFinder matches to position: 2654524-2654549, mismatch: 1, identity: 0.962

cgaaattctctgtgttggggcccaca	CRISPR spacer
cgaaattctctttgttggggcccaca	Protospacer
*********** **************

26. spacer 2.1|685501|29|CP020713|CRISPRCasFinder matches to position: 2138094-2138122, mismatch: 2, identity: 0.931

accccaacttgcacattatagtaagctga	CRISPR spacer
accccaacttgcacactattgtaagctga	Protospacer
***************.*** *********

27. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 2513533-2513563, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttctttttgaaattctct	Protospacer
***.****************.**********

28. spacer 4.1|1837757|31|CP020713|CRISPRCasFinder matches to position: 2513588-2513618, mismatch: 2, identity: 0.935

ttgcctgtagaatttcttttcgaaattctct	CRISPR spacer
ttgtctgtagaatttctttttgaaattctct	Protospacer
***.****************.**********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP020713_7	7.1\|2568878\|34\|CP020713\|CRISPRCasFinder	2568878-2568911	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
CP020713_7	7.1\|2568878\|34\|CP020713\|CRISPRCasFinder	2568878-2568911	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765

1. spacer 7.1|2568878|34|CP020713|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

2. spacer 7.1|2568878|34|CP020713|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

657059 : 665389

Staphylococcus_phage(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ53768.1\|657059_657845_-	zinc ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-18	28.3
AUJ53769.1\|657970_658861_-	endonuclease	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
AUJ53770.1\|658870_660217_-	DEAD/DEAH box family ATP-dependent RNA helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
AUJ53771.1\|660330_661431_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
AUJ53772.1\|661433_662111_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
AUJ53773.1\|662241_663348_-	RNA polymerase sigma factor SigA	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AUJ53774.1\|663571_665389_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.6e-54	36.0

DBSCAN-SWA_2

799472 : 835418

Staphylococcus_phage(56.1%)

tail,head,portal,integrase,holin,terminase,protease

attL 800842:800879|attR 835573:835610

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ53903.1\|799472_800813_-\|head	phage head morphogenesis protein	A0A1J0MF61	Staphylococcus_phage	5.3e-140	58.7
800842:800879	attL	NA	NA	NA	NA
AUJ53904.1\|801067_801292_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.6e-20	75.4
AUJ55741.1\|802583_803519_-\|protease	CAAX protease	A0A059NT88	Lactococcus_phage	5.3e-70	44.0
AUJ53905.1\|803739_803937_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	3.7e-10	48.4
AUJ53906.1\|804406_805312_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6JQL2	Staphylococcus_phage	1.0e-65	50.4
AUJ53907.1\|805376_805766_-\|holin	holin	A0A1S6L1J2	Staphylococcus_phage	6.9e-16	38.2
AUJ53908.1\|807193_808207_-	SGNH/GDSL hydrolase family protein	A0A1J0MFI8	Staphylococcus_phage	6.5e-98	52.6
AUJ53909.1\|808224_809910_-	hypothetical protein	Q4ZE19	Staphylococcus_virus	1.4e-108	46.5
AUJ53910.1\|809918_810854_-\|tail	phage tail protein	A0A1J0MF79	Staphylococcus_phage	2.1e-98	55.9
AUJ53911.1\|810868_814039_-	hypothetical protein	Q4ZE24	Staphylococcus_virus	1.6e-94	54.5
AUJ55742.1\|814050_814404_-	hypothetical protein	Q4ZE25	Staphylococcus_virus	1.7e-37	72.3
AUJ53912.1\|814454_814799_-\|tail	phage tail protein	A0A1J0MFH0	Staphylococcus_phage	2.9e-34	58.9
AUJ53913.1\|814860_815460_-\|tail	phage major tail protein, TP901-1 family	H9A0N8	Staphylococcus_phage	7.4e-17	47.5
AUJ53914.1\|815471_815867_-	hypothetical protein	H9A0N7	Staphylococcus_phage	1.9e-21	42.3
AUJ53915.1\|815876_816227_-	hypothetical protein	H9A0N6	Staphylococcus_phage	9.3e-36	60.0
AUJ53916.1\|816227_816533_-	hypothetical protein	Q4ZE30	Staphylococcus_virus	6.4e-17	40.6
AUJ53917.1\|816532_816859_-\|head,tail	phage head-tail adapter protein	Q4ZE31	Staphylococcus_virus	2.1e-26	56.4
AUJ53918.1\|816874_817348_-	hypothetical protein	A0A2H4J9T3	uncultured_Caudovirales_phage	9.7e-12	31.6
AUJ53919.1\|818354_818933_-	hypothetical protein	Q4ZE34	Staphylococcus_virus	1.9e-09	50.8
AUJ53920.1\|818899_819028_-	hypothetical protein	NA	NA	NA	NA
AUJ53921.1\|819227_820217_-\|head	head morphogenesis protein	Q4ZE35	Staphylococcus_virus	3.8e-50	68.9
AUJ53922.1\|820238_820757_-	hypothetical protein	A0A1J0MFV1	Staphylococcus_phage	4.7e-44	55.3
AUJ53923.1\|820746_822195_-\|portal	phage portal protein	Q4ZE36	Staphylococcus_virus	3.7e-195	69.4
AUJ53924.1\|822207_823482_-\|terminase	terminase	Q4ZE37	Staphylococcus_virus	3.2e-195	76.2
AUJ53925.1\|823468_823897_-	HNH endonuclease	A1EAE0	Streptococcus_phage	1.1e-25	45.1
AUJ53926.1\|824049_824538_-	RNA polymerase subunit sigma-70	R9TMH4	Paenibacillus_phage	8.7e-08	28.3
AUJ53927.1\|824580_824814_-	hypothetical protein	NA	NA	NA	NA
AUJ53928.1\|824814_825279_-	hypothetical protein	C9E2P0	Enterococcus_phage	6.1e-19	42.4
AUJ53929.1\|825513_826044_-	nucleotide pyrophosphohydrolase	A0A1P8VVP1	Streptococcus_phage	2.3e-22	39.1
AUJ53930.1\|826036_826348_-	hypothetical protein	NA	NA	NA	NA
AUJ53931.1\|826353_826512_-	hypothetical protein	A0A0E3T9L7	Staphylococcus_phage	6.7e-18	90.4
AUJ53932.1\|826526_826817_-	hypothetical protein	A0A223LIA9	Staphylococcus_phage	7.2e-18	58.1
AUJ55743.1\|827731_828226_-	single-stranded DNA-binding protein	A7TWM8	Staphylococcus_phage	6.4e-83	94.0
AUJ53933.1\|828306_829086_-	chromosomal replication initiator DnaA	A0A1W6JPW0	Staphylococcus_phage	2.3e-127	88.0
AUJ53934.1\|829086_829623_-	hypothetical protein	A0A0H3U480	Staphylococcus_phage	1.7e-76	82.5
AUJ53935.1\|829627_829894_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	3.0e-18	53.6
AUJ53936.1\|829883_830201_-	hypothetical protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
AUJ53937.1\|830287_830449_-	DUF1270 domain-containing protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
AUJ53938.1\|830547_831231_-	phage repressor protein	A9CR56	Staphylococcus_phage	2.0e-106	85.2
AUJ53939.1\|831291_831498_+	hypothetical protein	A1BTY8	Staphylococcus_virus	3.3e-25	75.0
AUJ53940.1\|831921_832197_-	hypothetical protein	NA	NA	NA	NA
AUJ53941.1\|832223_832442_-	DUF739 domain-containing protein	A0A2I6PE94	Staphylococcus_phage	4.9e-19	62.5
AUJ53942.1\|832609_833002_+	transcriptional regulator	A0A2I6PE55	Staphylococcus_phage	1.6e-28	53.6
AUJ53943.1\|833148_833532_+	hypothetical protein	NA	NA	NA	NA
AUJ53944.1\|833543_834239_+	hypothetical protein	A0A2H4J5B8	uncultured_Caudovirales_phage	3.6e-07	50.3
AUJ55744.1\|834701_835418_+\|integrase	site-specific integrase	A0A0C5AN64	Paenibacillus_phage	4.1e-22	34.7
835573:835610	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1013478 : 1047980

Staphylococcus_phage(90.32%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ54098.1\|1013478_1014231_-	hypothetical protein	A0A097PAT7	Streptococcus_pyogenes_phage	4.4e-51	47.2
AUJ54099.1\|1014257_1015028_-	exotoxin	A0EX09	Staphylococcus_phage	4.3e-25	33.5
AUJ54100.1\|1015027_1015654_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.9e-93	93.8
AUJ54101.1\|1016802_1017453_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	3.0e-56	99.1
AUJ55748.1\|1017755_1018211_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	1.2e-78	98.6
AUJ54102.1\|1018369_1019848_+	2-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.5e-289	100.0
AUJ54103.1\|1019852_1020854_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	9.7e-187	98.2
AUJ54104.1\|1020850_1021108_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	3.6e-45	98.8
AUJ54105.1\|1021173_1021647_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.7e-83	98.1
AUJ55749.1\|1021651_1022398_+	dipeptidyl aminopeptidase	A0A2H4PQM6	Staphylococcus_phage	2.2e-143	99.2
AUJ54106.1\|1022775_1024368_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AUJ54107.1\|1024739_1025933_+	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
AUJ54108.1\|1026057_1026966_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AUJ54109.1\|1027177_1028011_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
AUJ54110.1\|1028022_1028202_-	hypothetical protein	NA	NA	NA	NA
AUJ54111.1\|1028393_1028747_-	camphor resistance protein CrcB	A0A2H4PQQ7	Staphylococcus_phage	2.6e-22	100.0
AUJ54112.1\|1028743_1029109_-	camphor resistance protein CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AUJ54113.1\|1029364_1029667_-	hypothetical protein	NA	NA	NA	NA
AUJ54114.1\|1029926_1030640_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AUJ54115.1\|1031079_1031715_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AUJ54116.1\|1032010_1032454_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AUJ54117.1\|1032440_1032884_-	competence protein ComK	NA	NA	NA	NA
AUJ54118.1\|1032996_1033467_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
AUJ54119.1\|1033665_1033890_+	hypothetical protein	NA	NA	NA	NA
AUJ54120.1\|1034165_1035020_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AUJ54121.1\|1035314_1035710_-	protein ArsC	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
AUJ54122.1\|1035727_1037020_-	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AUJ54123.1\|1037019_1037334_-	transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
AUJ54124.1\|1037856_1039359_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
AUJ54125.1\|1039851_1040883_+	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	2.0e-195	98.8
AUJ54126.1\|1040889_1041522_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.4e-113	100.0
AUJ54127.1\|1041532_1042714_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	1.7e-227	100.0
AUJ54128.1\|1042726_1043191_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AUJ54129.1\|1043312_1044314_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	3.1e-185	100.0
AUJ55750.1\|1044222_1044414_+	hypothetical protein	NA	NA	NA	NA
AUJ54130.1\|1044425_1044545_+	hypothetical protein	NA	NA	NA	NA
AUJ54131.1\|1044547_1045375_+	lysophospholipase	NA	NA	NA	NA
AUJ54132.1\|1045945_1046347_+	MarR family transcriptional regulator	NA	NA	NA	NA
AUJ54133.1\|1046466_1047030_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AUJ54134.1\|1047026_1047980_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0

DBSCAN-SWA_4

1184767 : 1193810

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ54250.1\|1184767_1185772_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AUJ54251.1\|1185773_1186799_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AUJ54252.1\|1186821_1187961_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AUJ54253.1\|1187979_1188240_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AUJ54254.1\|1188514_1190794_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.4e-31	36.6
AUJ54255.1\|1190996_1193270_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.1e-63	29.1
AUJ54256.1\|1193291_1193810_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_5

1839340 : 1847795

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ55782.1\|1839340_1839805_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.5e-20	43.8
AUJ54827.1\|1839791_1840916_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AUJ54828.1\|1840919_1841624_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AUJ54829.1\|1841623_1841887_+	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
AUJ54830.1\|1841888_1842560_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AUJ54831.1\|1842552_1844742_+	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	1.3e-140	39.7
AUJ54832.1\|1844720_1846205_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
AUJ54833.1\|1846197_1847226_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AUJ54834.1\|1847228_1847795_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_6

2006752 : 2072896

Staphylococcus_phage(82.05%)

tail,capsid,head,portal,integrase,holin,terminase,protease

attL 2062767:2062782|attR 2070954:2070969

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ54989.1\|2006752_2007340_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	8.2e-53	55.3
AUJ54990.1\|2007582_2008485_-	TIGR01777 family protein	NA	NA	NA	NA
AUJ54991.1\|2009187_2009817_+	DUF4887 domain-containing protein	NA	NA	NA	NA
AUJ54992.1\|2009987_2010110_+	hypothetical protein	NA	NA	NA	NA
AUJ54993.1\|2010520_2011534_+	hypothetical protein	NA	NA	NA	NA
AUJ54994.1\|2011586_2012597_+	aldehyde dehydrogenase	NA	NA	NA	NA
AUJ54995.1\|2012735_2013926_+	phosphoglycerate kinase	NA	NA	NA	NA
AUJ54996.1\|2014047_2014809_+	triose-phosphate isomerase	NA	NA	NA	NA
AUJ54997.1\|2014811_2016329_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
AUJ54998.1\|2016458_2017763_+	enolase	W6LP63	Streptococcus_phage	6.7e-196	80.7
AUJ54999.1\|2018101_2018560_+	hypothetical protein	NA	NA	NA	NA
AUJ55000.1\|2018626_2018860_+	protein-export membrane protein SecG	NA	NA	NA	NA
AUJ55001.1\|2018975_2019716_+	carboxylesterase	NA	NA	NA	NA
AUJ55002.1\|2019749_2022122_+	ribonuclease R	Q0GXV6	Lactococcus_phage	1.3e-93	39.0
AUJ55003.1\|2022143_2022608_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
AUJ55004.1\|2023119_2024169_-\|integrase	site-specific integrase	W5R968	Staphylococcus_phage	7.0e-196	99.1
AUJ55005.1\|2024230_2024734_-	hypothetical protein	A0A059T7N4	Staphylococcus_phage	1.5e-47	98.8
AUJ55006.1\|2024737_2025229_-	hypothetical protein	M9NSS1	Staphylococcus_phage	3.7e-83	98.2
AUJ55007.1\|2025249_2025711_-	toxin	A0A2H4IYT4	uncultured_Caudovirales_phage	4.9e-45	58.9
AUJ55008.1\|2025726_2026041_-	transcriptional regulator	A0A1W6JP51	Staphylococcus_phage	6.4e-36	72.1
AUJ55009.1\|2026207_2026453_+	transcriptional regulator	I6T7P7	Staphylococcus_virus	1.3e-28	77.8
AUJ55790.1\|2026622_2026916_-	hypothetical protein	Q4ZB03	Staphylococcus_virus	1.5e-39	97.6
AUJ55010.1\|2026923_2027625_+	phage repressor protein	W5R8M8	Staphylococcus_phage	5.1e-126	98.7
AUJ55011.1\|2027649_2027859_+	hypothetical protein	A0A2H4PQR1	Staphylococcus_phage	9.7e-33	100.0
AUJ55012.1\|2027872_2028034_+	DUF1270 domain-containing protein	C7F7L3	Staphylococcus_phage	1.9e-20	100.0
AUJ55013.1\|2028126_2028429_+	hypothetical protein	A0A0F6N3N3	Staphylococcus_phage	1.2e-47	99.0
AUJ55014.1\|2028433_2028694_+	hypothetical protein	A0A068A219	Staphylococcus_phage	8.9e-44	100.0
AUJ55015.1\|2028703_2028925_+	hypothetical protein	B2ZYV2	Staphylococcus_phage	3.2e-34	100.0
AUJ55016.1\|2028917_2029706_+	chromosomal replication initiator DnaA	Q4ZBM5	Staphylococcus_phage	2.6e-142	100.0
AUJ55017.1\|2029734_2030286_+	single-stranded DNA-binding protein	Q4ZBM4	Staphylococcus_phage	3.4e-101	100.0
AUJ55018.1\|2030298_2030991_+	hypothetical protein	Q4ZAZ0	Staphylococcus_virus	2.0e-130	98.3
AUJ55019.1\|2030962_2031766_+	replication protein	A0A2H4JCF5	uncultured_Caudovirales_phage	1.1e-121	100.0
AUJ55020.1\|2031775_2032549_+	DNA replication protein DnaC	A0A2I6PDA0	Staphylococcus_phage	2.7e-144	99.6
AUJ55021.1\|2032542_2032701_+	hypothetical protein	A0A2I6PDX0	Staphylococcus_phage	5.8e-22	96.2
AUJ55022.1\|2032713_2032935_+	hypothetical protein	A0A0H3U2V4	Staphylococcus_phage	2.2e-35	100.0
AUJ55023.1\|2032945_2033350_+	hypothetical protein	A7TWN5	Staphylococcus_phage	7.1e-72	100.0
AUJ55024.1\|2033354_2033540_+	hypothetical protein	A0A1X9H0T9	Staphylococcus_phage	6.0e-26	95.1
AUJ55025.1\|2033540_2034158_+	hypothetical protein	A0A0H3U4U9	Staphylococcus_phage	1.2e-83	99.5
AUJ55026.1\|2034157_2034412_+	hypothetical protein	A0A2K9VBW1	Staphylococcus_phage	1.6e-42	100.0
AUJ55027.1\|2034411_2034660_+	hypothetical protein	A0A2I6PDB4	Staphylococcus_phage	2.1e-42	100.0
AUJ55028.1\|2034674_2034881_+	hypothetical protein	A0A2I6PDB7	Staphylococcus_phage	1.3e-34	100.0
AUJ55029.1\|2034883_2035288_+	hypothetical protein	A0A0E3T8H9	Staphylococcus_phage	6.0e-71	98.5
AUJ55030.1\|2035284_2035479_+	hypothetical protein	A0A0E3XCV8	Staphylococcus_phage	2.5e-27	100.0
AUJ55031.1\|2035475_2035847_+	hypothetical protein	I1W606	Staphylococcus_phage	1.6e-65	100.0
AUJ55032.1\|2035843_2036233_+	acetyltransferase	I1W604	Staphylococcus_phage	1.4e-69	100.0
AUJ55033.1\|2036225_2036480_+	hypothetical protein	A7TWH5	Staphylococcus_phage	6.1e-37	92.9
AUJ55034.1\|2036442_2036637_+	hypothetical protein	M1SVE4	Staphylococcus_phage	1.3e-23	93.4
AUJ55035.1\|2036629_2037142_+	dUTP pyrophosphatase	Q4ZDG4	Staphylococcus_virus	2.8e-89	98.8
AUJ55036.1\|2037178_2037466_+	DUF1381 domain-containing protein	Q4ZAB6	Staphylococcus_virus	4.4e-44	96.8
AUJ55037.1\|2037458_2037695_+	hypothetical protein	A0A2I6PEM4	Staphylococcus_phage	2.0e-34	94.9
AUJ55038.1\|2037678_2038074_+	hypothetical protein	M9QX07	Staphylococcus_phage	1.3e-62	94.7
AUJ55039.1\|2038070_2038244_+	transcriptional regulator	A0A0H3U4U1	Staphylococcus_phage	1.9e-21	96.5
AUJ55040.1\|2038244_2038391_+	hypothetical protein	B2ZYX7	Staphylococcus_phage	3.7e-15	97.9
AUJ55041.1\|2038414_2038837_+	transcriptional regulator	A0A0F6N3E5	Staphylococcus_phage	2.7e-74	99.3
AUJ55042.1\|2039167_2039662_+\|terminase	terminase	A0A059T7P8	Staphylococcus_phage	1.1e-74	99.4
AUJ55043.1\|2039654_2040878_+\|terminase	terminase	A0A0N9BAX9	Staphylococcus_phage	7.5e-242	100.0
AUJ55044.1\|2040874_2042299_+\|portal	phage portal protein	A0A0E3T9I6	Staphylococcus_phage	4.8e-272	100.0
AUJ55045.1\|2042267_2043218_+\|head	phage head morphogenesis protein	M9NST7	Staphylococcus_phage	2.3e-177	100.0
AUJ55046.1\|2043221_2043455_+	hypothetical protein	M9NUJ2	Staphylococcus_phage	2.5e-37	100.0
AUJ55047.1\|2043558_2044143_+	hypothetical protein	M9NRJ1	Staphylococcus_phage	9.9e-75	99.5
AUJ55048.1\|2044159_2045074_+\|capsid	major capsid protein	A0A059T7K3	Staphylococcus_phage	1.3e-169	99.3
AUJ55049.1\|2045234_2045585_+\|head,tail	phage head-tail adapter protein	A0A0H3U2R5	Staphylococcus_phage	3.2e-60	99.1
AUJ55050.1\|2045596_2045932_+\|head,tail	phage head-tail adapter protein	M9NUJ3	Staphylococcus_phage	1.3e-58	98.2
AUJ55051.1\|2045918_2046332_+	hypothetical protein	A0A0N9BAY5	Staphylococcus_phage	2.0e-74	98.5
AUJ55052.1\|2046344_2046770_+	hypothetical protein	Q4ZBQ9	Staphylococcus_phage	2.3e-73	98.6
AUJ55053.1\|2046770_2047328_+\|tail	phage tail protein	A0A059T675	Staphylococcus_phage	4.1e-102	100.0
AUJ55054.1\|2047394_2047907_+	hypothetical protein	A0A059T5B1	Staphylococcus_phage	1.2e-92	99.4
AUJ55055.1\|2047951_2048236_+	hypothetical protein	A0A059T626	Staphylococcus_phage	9.8e-44	96.8
AUJ55056.1\|2048239_2051125_+\|terminase	terminase	M9NRJ5	Staphylococcus_phage	2.3e-310	92.2
AUJ55057.1\|2051139_2052081_+\|tail	phage tail protein	A0A059T7K5	Staphylococcus_phage	4.5e-178	98.1
AUJ55058.1\|2052091_2053978_+	peptidase	A0A059T677	Staphylococcus_phage	0.0e+00	97.8
AUJ55059.1\|2053990_2055889_+	hypothetical protein	A0A0H3U448	Staphylococcus_phage	0.0e+00	95.1
AUJ55060.1\|2055888_2057712_+	hypothetical protein	B1H3M3	Staphylococcus_phage	0.0e+00	99.8
AUJ55061.1\|2057711_2058089_+	hypothetical protein	Q8LTH7	Staphylococcus_phage	7.3e-55	100.0
AUJ55791.1\|2058092_2058266_+	XkdX family protein	A0A059T7K6	Staphylococcus_phage	1.3e-27	100.0
AUJ55062.1\|2058306_2058606_+	hypothetical protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AUJ55063.1\|2058742_2060617_+	CHAP domain-containing protein	Q4ZBP7	Staphylococcus_phage	0.0e+00	97.8
AUJ55064.1\|2060629_2063224_+\|tail	phage tail protein	Q4ZC48	Staphylococcus_virus	1.1e-271	57.0
2062767:2062782	attL	NA	NA	NA	NA
AUJ55065.1\|2063279_2063717_+\|holin	phage holin	A7YGY0	Staphylococcus_virus	2.2e-71	97.2
AUJ55066.1\|2063697_2065143_+	autolysin	Q08JW9	Staphylococcus_phage	5.7e-289	97.7
AUJ55067.1\|2065541_2065697_+	hypothetical protein	NA	NA	NA	NA
AUJ55068.1\|2065671_2065878_+	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	9.9e-30	98.5
AUJ55069.1\|2065891_2066092_+	hypothetical protein	A0A2H4PQS9	Staphylococcus_phage	3.5e-32	100.0
AUJ55070.1\|2066381_2067488_-\|integrase	site-specific integrase	A0A1B2AQ00	Phage_Wrath	1.2e-76	43.0
AUJ55071.1\|2067477_2068281_-	transcriptional regulator	A0A2H4JC02	uncultured_Caudovirales_phage	5.3e-10	55.9
AUJ55072.1\|2068416_2068620_+	transcriptional regulator	NA	NA	NA	NA
AUJ55073.1\|2068655_2068874_+	transcriptional regulator	NA	NA	NA	NA
AUJ55074.1\|2068885_2069041_+	pathogenicity island protein	NA	NA	NA	NA
AUJ55075.1\|2069024_2069330_+	pathogenicity island protein	Q4ZE75	Staphylococcus_phage	3.1e-43	88.1
AUJ55076.1\|2069404_2071015_+	phage resistance protein	A0A1W6JPF4	Staphylococcus_phage	4.0e-243	77.6
2070954:2070969	attR	NA	NA	NA	NA
AUJ55077.1\|2071190_2071994_+	DNA primase	Q4ZE69	Staphylococcus_phage	1.3e-149	96.3
AUJ55078.1\|2071980_2072253_+	pathogenicity island protein	Q4ZE68	Staphylococcus_phage	2.0e-41	92.2
AUJ55079.1\|2072254_2072896_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	4.2e-111	93.0

DBSCAN-SWA_7

2294755 : 2306908

uncultured_Caudovirales_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ55310.1\|2294755_2295157_+	hypothetical protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
AUJ55311.1\|2295376_2295481_-	hypothetical protein	NA	NA	NA	NA
AUJ55312.1\|2295613_2296585_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AUJ55313.1\|2296702_2298808_-	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AUJ55314.1\|2298770_2299169_-	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AUJ55315.1\|2299318_2299585_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AUJ55316.1\|2299969_2300836_+	EamA family transporter	NA	NA	NA	NA
AUJ55317.1\|2300855_2301356_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AUJ55318.1\|2301385_2301631_+	hypothetical protein	NA	NA	NA	NA
AUJ55319.1\|2301696_2303202_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AUJ55320.1\|2303279_2303381_-	hypothetical protein	NA	NA	NA	NA
AUJ55321.1\|2303471_2304389_+	lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
AUJ55322.1\|2304822_2304915_+	hypothetical protein	NA	NA	NA	NA
AUJ55323.1\|2305012_2305555_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AUJ55324.1\|2305702_2305828_-	hypothetical protein	NA	NA	NA	NA
AUJ55325.1\|2305849_2306908_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	1.1e-20	27.3

DBSCAN-SWA_8

2318879 : 2326698

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ55334.1\|2318879_2320031_-	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	1.2e-23	36.1
AUJ55335.1\|2320014_2320608_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AUJ55336.1\|2320958_2321627_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AUJ55337.1\|2321628_2322048_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AUJ55338.1\|2322051_2322765_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AUJ55339.1\|2322863_2323448_+	hypothetical protein	NA	NA	NA	NA
AUJ55340.1\|2323727_2324168_+	hypothetical protein	NA	NA	NA	NA
AUJ55341.1\|2324508_2324982_+	DoxX family protein	NA	NA	NA	NA
AUJ55342.1\|2324956_2325643_+	DNA-binding response regulator	NA	NA	NA	NA
AUJ55343.1\|2325642_2326698_+	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	1.6e-14	29.5

DBSCAN-SWA_9

2599387 : 2610476

Staphylococcus_phage(61.54%)

integrase

attL 2601347:2601366|attR 2611397:2611416

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ55598.1\|2599387_2599672_+	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
AUJ55599.1\|2599747_2601364_+	molecular chaperone GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
2601347:2601366	attL	NA	NA	NA	NA
AUJ55600.1\|2601432_2602605_-\|integrase	site-specific integrase	A0A1W6JQD3	Staphylococcus_phage	1.3e-219	97.9
AUJ55601.1\|2602618_2603293_-	transcriptional regulator	A0A2H4JGT9	uncultured_Caudovirales_phage	1.6e-39	45.8
AUJ55602.1\|2603465_2603684_+	transcriptional regulator	A0A2H4JB11	uncultured_Caudovirales_phage	1.3e-19	66.7
AUJ55603.1\|2603688_2604006_+	excisionase	A0A1W6JQE0	Staphylococcus_phage	1.6e-50	97.1
AUJ55604.1\|2604002_2604149_+	pathogenicity island protein	NA	NA	NA	NA
AUJ55605.1\|2604141_2604351_+	pathogenicity island protein	Q4ZE76	Staphylococcus_phage	1.7e-29	94.2
AUJ55606.1\|2604353_2604674_+	pathogenicity island protein	A0A1W6JQH0	Staphylococcus_phage	6.5e-20	58.2
AUJ55607.1\|2604740_2605610_+	mobile element-associated protein	Q4ZE74	Staphylococcus_phage	1.5e-164	96.2
AUJ55608.1\|2605623_2607324_+	hypothetical protein	Q4ZE73	Staphylococcus_phage	1.3e-308	95.2
AUJ55609.1\|2607653_2608034_+	hypothetical protein	Q4ZE71	Staphylococcus_phage	3.2e-66	96.0
AUJ55610.1\|2608030_2608672_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	1.4e-109	92.0
AUJ55611.1\|2609117_2609822_-	toxin	NA	NA	NA	NA
AUJ55612.1\|2610239_2610476_+	DUF3102 domain-containing protein	A0A2H4JAH5	uncultured_Caudovirales_phage	8.7e-14	48.1
2611397:2611416	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: CP020713.1|AUJ55014.1|2028433_2028694_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP020713.1|AUJ55014.1|2028433_2028694_+|hypothetical-protein

2028433_2028694_+

86 aa aa

2006752-2072896

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP020713_2	Orphan	2.1\|685501\|29\|CP020713\|CRISPRCasFinder	685501-685529	29	2010082-2010110	1

1. spacer 2.1|685501|29|CP020713|CRISPRCasFinder matches to CP020713 position: 2010082-2010110, mismatch: 1

accccaacttgcacattatagtaagctga	CRISPR spacer
accccaacttgcacattattgtaagctga	Protospacer
******************* *********

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP020713

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information