CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP020714	Staphylococcus aureus strain K18 chromosome, complete genome	0 crisprs	DEDDh,DinG,cas3,WYL,csa3	0	0	10	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

143077 : 184793

Staphylococcus_phage(45.71%)

tRNA,head,terminase,portal,integrase,tail

attL 163234:163271|attR 197964:198001

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ55942.1\|143077_144622_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
AUJ55943.1\|144622_144988_+	hypothetical protein	NA	NA	NA	NA
AUJ55944.1\|145014_145506_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA
AUJ55945.1\|145808_148427_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	8.5e-41	23.7
AUJ55946.1\|148439_150449_+	DNA mismatch repair protein MutL	A0A1B2LRQ5	Wolbachia_phage	2.8e-60	30.7
AUJ55947.1\|150454_150997_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA
AUJ55948.1\|151471_152290_+	aquaporin	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	2.4e-26	35.1
AUJ55949.1\|152418_153915_+	glycerol kinase	NA	NA	NA	NA
AUJ55950.1\|154072_155746_+	aerobic glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
AUJ55951.1\|155895_156810_+	lysophospholipase	NA	NA	NA	NA
AUJ55952.1\|156827_157763_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
AUJ55953.1\|157777_158011_+	RNA-binding protein Hfq	NA	NA	NA	NA
AUJ55954.1\|158232_158709_-	glutathione peroxidase	Q70H87	Fowlpox_virus	1.2e-22	38.0
AUJ55955.1\|158820_160059_+	GTPase HflX	NA	NA	NA	NA
AUJ55956.1\|160077_161316_+	hypothetical protein	NA	NA	NA	NA
AUJ55957.1\|161558_161927_+	MerR family transcriptional regulator	NA	NA	NA	NA
AUJ55958.1\|161945_163286_+	glutamine synthetase	NA	NA	NA	NA
163234:163271	attL	NA	NA	NA	NA
AUJ58404.1\|163425_164142_-\|integrase	site-specific integrase	A0A0C5AN64	Paenibacillus_phage	4.1e-22	34.7
AUJ55959.1\|164604_165300_-	hypothetical protein	A0A2H4J5B8	uncultured_Caudovirales_phage	3.6e-07	50.3
AUJ55960.1\|165311_165695_-	hypothetical protein	NA	NA	NA	NA
AUJ55961.1\|165841_166234_-	transcriptional regulator	A0A2I6PE55	Staphylococcus_phage	1.6e-28	53.6
AUJ55962.1\|166401_166620_+	DUF739 domain-containing protein	A0A2I6PE94	Staphylococcus_phage	4.9e-19	62.5
AUJ55963.1\|166646_166922_+	hypothetical protein	NA	NA	NA	NA
AUJ55964.1\|167345_167552_-	hypothetical protein	A1BTY8	Staphylococcus_virus	3.3e-25	75.0
AUJ55965.1\|167612_168296_+	phage repressor protein	A9CR56	Staphylococcus_phage	2.0e-106	85.2
AUJ55966.1\|168394_168556_+	DUF1270 domain-containing protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
AUJ55967.1\|168642_168960_+	hypothetical protein	W5RAK4	Staphylococcus_phage	1.6e-39	80.6
AUJ55968.1\|168949_169216_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	3.0e-18	53.6
AUJ55969.1\|169220_169757_+	hypothetical protein	A0A0H3U480	Staphylococcus_phage	1.7e-76	82.5
AUJ55970.1\|169757_170537_+	chromosomal replication initiator DnaA	A0A1W6JPW0	Staphylococcus_phage	2.3e-127	88.0
AUJ58405.1\|170617_171112_+	single-stranded DNA-binding protein	A7TWM8	Staphylococcus_phage	6.4e-83	94.0
AUJ55971.1\|172026_172317_+	hypothetical protein	A0A223LIA9	Staphylococcus_phage	7.2e-18	58.1
AUJ55972.1\|172331_172490_+	hypothetical protein	A0A0E3T9L7	Staphylococcus_phage	6.7e-18	90.4
AUJ55973.1\|172495_172807_+	hypothetical protein	NA	NA	NA	NA
AUJ55974.1\|172799_173330_+	nucleotide pyrophosphohydrolase	A0A1P8VVP1	Streptococcus_phage	2.3e-22	39.1
AUJ55975.1\|173564_174029_+	hypothetical protein	C9E2P0	Enterococcus_phage	6.1e-19	42.4
AUJ55976.1\|174029_174263_+	hypothetical protein	NA	NA	NA	NA
AUJ55977.1\|174305_174794_+	RNA polymerase subunit sigma-70	R9TMH4	Paenibacillus_phage	8.7e-08	28.3
AUJ55978.1\|174946_175375_+	HNH endonuclease	A1EAE0	Streptococcus_phage	1.1e-25	45.1
AUJ55979.1\|175361_176636_+\|terminase	terminase	Q4ZE37	Staphylococcus_virus	3.2e-195	76.2
AUJ55980.1\|176648_178097_+\|portal	phage portal protein	Q4ZE36	Staphylococcus_virus	3.7e-195	69.4
AUJ55981.1\|178086_178605_+	hypothetical protein	A0A1J0MFV1	Staphylococcus_phage	4.7e-44	55.3
AUJ55982.1\|178626_179616_+\|head	head morphogenesis protein	Q4ZE35	Staphylococcus_virus	3.8e-50	68.9
AUJ55983.1\|179815_179944_+	hypothetical protein	NA	NA	NA	NA
AUJ55984.1\|179910_180489_+	hypothetical protein	Q4ZE34	Staphylococcus_virus	1.9e-09	50.8
AUJ55985.1\|181495_181969_+	hypothetical protein	A0A2H4J9T3	uncultured_Caudovirales_phage	9.7e-12	31.6
AUJ55986.1\|181984_182311_+\|head,tail	phage head-tail adapter protein	Q4ZE31	Staphylococcus_virus	2.1e-26	56.4
AUJ55987.1\|182310_182616_+	hypothetical protein	Q4ZE30	Staphylococcus_virus	6.4e-17	40.6
AUJ55988.1\|182616_182967_+	hypothetical protein	H9A0N6	Staphylococcus_phage	9.3e-36	60.0
AUJ55989.1\|182976_183372_+	hypothetical protein	H9A0N7	Staphylococcus_phage	1.9e-21	42.3
AUJ55990.1\|183383_183983_+\|tail	phage major tail protein, TP901-1 family	H9A0N8	Staphylococcus_phage	7.4e-17	47.5
AUJ55991.1\|184044_184389_+\|tail	phage tail protein	A0A1J0MFH0	Staphylococcus_phage	2.9e-34	58.9
AUJ58406.1\|184439_184793_+	hypothetical protein	Q4ZE25	Staphylococcus_virus	1.7e-37	72.3
197964:198001	attR	NA	NA	NA	NA

DBSCAN-SWA_2

188932 : 199370

Staphylococcus_phage(75.0%)

protease,holin,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ55993.1\|188932_190618_+	hypothetical protein	Q4ZE19	Staphylococcus_virus	1.4e-108	46.5
AUJ55994.1\|190635_191649_+	SGNH/GDSL hydrolase family protein	A0A1J0MFI8	Staphylococcus_phage	6.5e-98	52.6
AUJ55995.1\|193076_193466_+\|holin	holin	A0A1S6L1J2	Staphylococcus_phage	6.9e-16	38.2
AUJ55996.1\|193530_194436_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6JQL2	Staphylococcus_phage	1.0e-65	50.4
AUJ55997.1\|194905_195103_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	3.7e-10	48.4
AUJ58407.1\|195323_196259_+\|protease	CAAX protease	A0A059NT88	Lactococcus_phage	5.3e-70	44.0
AUJ55998.1\|197550_197775_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.6e-20	75.4
AUJ55999.1\|198029_199370_+\|head	phage head morphogenesis protein	A0A1J0MF61	Staphylococcus_phage	5.3e-140	58.7

DBSCAN-SWA_3

471476 : 479806

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ56240.1\|471476_472262_-	zinc ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.0e-18	28.3
AUJ56241.1\|472387_473278_-	endonuclease	A0A2H4UU70	Bodo_saltans_virus	3.4e-26	36.0
AUJ56242.1\|473287_474634_-	DEAD/DEAH box family ATP-dependent RNA helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
AUJ56243.1\|474747_475848_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
AUJ56244.1\|475850_476528_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
AUJ56245.1\|476658_477765_-	RNA polymerase sigma factor SigA	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
AUJ56246.1\|477988_479806_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.6e-54	36.0

DBSCAN-SWA_4

751085 : 759540

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ56516.1\|751085_751652_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1
AUJ56517.1\|751654_752683_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
AUJ56518.1\|752675_754160_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
AUJ56519.1\|754138_756328_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	1.3e-140	39.7
AUJ56520.1\|756320_756992_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AUJ56521.1\|756993_757257_-	phosphoribosylformylglycinamidine synthase	NA	NA	NA	NA
AUJ56522.1\|757256_757961_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
AUJ56523.1\|757964_759089_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AUJ58424.1\|759075_759540_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.5e-20	43.8

DBSCAN-SWA_5

1575094 : 1584137

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ57288.1\|1575094_1576099_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
AUJ57289.1\|1576100_1577126_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AUJ57290.1\|1577148_1578288_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
AUJ57291.1\|1578306_1578567_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
AUJ57292.1\|1578841_1581121_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.4e-31	36.6
AUJ57293.1\|1581323_1583597_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.1e-63	29.1
AUJ57294.1\|1583618_1584137_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_6

1656488 : 1690991

Staphylococcus_phage(90.62%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ57361.1\|1656488_1657241_-	hypothetical protein	A0A097PAT7	Streptococcus_pyogenes_phage	4.4e-51	47.2
AUJ57362.1\|1657267_1658038_-	exotoxin	A0EX09	Staphylococcus_phage	4.3e-25	33.5
AUJ57363.1\|1658037_1658664_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	3.9e-93	93.8
AUJ57364.1\|1658737_1659733_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	4.2e-73	97.2
AUJ57365.1\|1659813_1660464_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	3.0e-56	99.1
AUJ58462.1\|1660766_1661222_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	1.2e-78	98.6
AUJ57366.1\|1661380_1662859_+	2-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.5e-289	100.0
AUJ57367.1\|1662863_1663865_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	9.7e-187	98.2
AUJ57368.1\|1663861_1664119_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	3.6e-45	98.8
AUJ57369.1\|1664184_1664658_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.7e-83	98.1
AUJ58463.1\|1664662_1665409_+	dipeptidyl aminopeptidase	A0A2H4PQM6	Staphylococcus_phage	2.2e-143	99.2
AUJ57370.1\|1665786_1667379_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
AUJ57371.1\|1667750_1668944_+	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
AUJ57372.1\|1669068_1669977_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
AUJ57373.1\|1670188_1671022_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.8e-158	99.3
AUJ57374.1\|1671033_1671213_-	hypothetical protein	NA	NA	NA	NA
AUJ57375.1\|1671404_1671758_-	camphor resistance protein CrcB	A0A2H4PQQ7	Staphylococcus_phage	2.6e-22	100.0
AUJ57376.1\|1671754_1672120_-	camphor resistance protein CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
AUJ57377.1\|1672375_1672678_-	hypothetical protein	NA	NA	NA	NA
AUJ57378.1\|1672937_1673651_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
AUJ57379.1\|1674090_1674726_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AUJ57380.1\|1675021_1675465_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
AUJ57381.1\|1675451_1675895_-	competence protein ComK	NA	NA	NA	NA
AUJ57382.1\|1676007_1676478_-	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
AUJ57383.1\|1676676_1676901_+	hypothetical protein	NA	NA	NA	NA
AUJ57384.1\|1677176_1678031_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
AUJ57385.1\|1678325_1678721_-	protein ArsC	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
AUJ57386.1\|1678738_1680031_-	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
AUJ57387.1\|1680030_1680345_-	transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	9.8e-53	98.1
AUJ57388.1\|1680867_1682370_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
AUJ58464.1\|1682862_1683894_+	riboflavin biosynthesis protein RibD	A0A2H4PQS8	Staphylococcus_phage	2.0e-195	98.8
AUJ57389.1\|1683900_1684533_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.4e-113	100.0
AUJ57390.1\|1684543_1685725_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	1.7e-227	100.0
AUJ57391.1\|1685737_1686202_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
AUJ57392.1\|1686323_1687325_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	3.1e-185	100.0
AUJ58465.1\|1687233_1687425_+	hypothetical protein	NA	NA	NA	NA
AUJ57393.1\|1687436_1687556_+	hypothetical protein	NA	NA	NA	NA
AUJ57394.1\|1687558_1688386_+	lysophospholipase	NA	NA	NA	NA
AUJ57395.1\|1688956_1689358_+	MarR family transcriptional regulator	NA	NA	NA	NA
AUJ57396.1\|1689477_1690041_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
AUJ57397.1\|1690037_1690991_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0

DBSCAN-SWA_7

1984079 : 2050223

Staphylococcus_phage(82.05%)

head,terminase,capsid,protease,portal,integrase,tail,holin

attL 1974810:1974830|attR 2050503:2050523

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1974810:1974830	attL	NA	NA	NA	NA
AUJ57643.1\|1984079_1984667_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	8.2e-53	55.3
AUJ57644.1\|1984909_1985812_-	TIGR01777 family protein	NA	NA	NA	NA
AUJ57645.1\|1986514_1987144_+	DUF4887 domain-containing protein	NA	NA	NA	NA
AUJ57646.1\|1987314_1987437_+	hypothetical protein	NA	NA	NA	NA
AUJ57647.1\|1987847_1988861_+	hypothetical protein	NA	NA	NA	NA
AUJ57648.1\|1988913_1989924_+	aldehyde dehydrogenase	NA	NA	NA	NA
AUJ57649.1\|1990062_1991253_+	phosphoglycerate kinase	NA	NA	NA	NA
AUJ57650.1\|1991374_1992136_+	triose-phosphate isomerase	NA	NA	NA	NA
AUJ57651.1\|1992138_1993656_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
AUJ57652.1\|1993785_1995090_+	enolase	W6LP63	Streptococcus_phage	6.7e-196	80.7
AUJ57653.1\|1995428_1995887_+	hypothetical protein	NA	NA	NA	NA
AUJ57654.1\|1995953_1996187_+	protein-export membrane protein SecG	NA	NA	NA	NA
AUJ57655.1\|1996302_1997043_+	carboxylesterase	NA	NA	NA	NA
AUJ57656.1\|1997076_1999449_+	ribonuclease R	Q0GXV6	Lactococcus_phage	1.3e-93	39.0
AUJ57657.1\|1999470_1999935_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
AUJ57658.1\|2000446_2001496_-\|integrase	site-specific integrase	W5R968	Staphylococcus_phage	7.0e-196	99.1
AUJ57659.1\|2001557_2002061_-	hypothetical protein	A0A059T7N4	Staphylococcus_phage	1.5e-47	98.8
AUJ57660.1\|2002064_2002556_-	hypothetical protein	M9NSS1	Staphylococcus_phage	3.7e-83	98.2
AUJ57661.1\|2002576_2003038_-	toxin	A0A2H4IYT4	uncultured_Caudovirales_phage	4.9e-45	58.9
AUJ57662.1\|2003053_2003368_-	transcriptional regulator	A0A1W6JP51	Staphylococcus_phage	6.4e-36	72.1
AUJ57663.1\|2003534_2003780_+	transcriptional regulator	I6T7P7	Staphylococcus_virus	1.3e-28	77.8
AUJ58482.1\|2003949_2004243_-	hypothetical protein	Q4ZB03	Staphylococcus_virus	1.5e-39	97.6
AUJ57664.1\|2004250_2004952_+	phage repressor protein	W5R8M8	Staphylococcus_phage	5.1e-126	98.7
AUJ57665.1\|2004976_2005186_+	hypothetical protein	A0A2H4PQR1	Staphylococcus_phage	9.7e-33	100.0
AUJ57666.1\|2005199_2005361_+	DUF1270 domain-containing protein	C7F7L3	Staphylococcus_phage	1.9e-20	100.0
AUJ57667.1\|2005453_2005756_+	hypothetical protein	A0A0F6N3N3	Staphylococcus_phage	1.2e-47	99.0
AUJ57668.1\|2005760_2006021_+	hypothetical protein	A0A068A219	Staphylococcus_phage	8.9e-44	100.0
AUJ57669.1\|2006030_2006252_+	hypothetical protein	B2ZYV2	Staphylococcus_phage	3.2e-34	100.0
AUJ57670.1\|2006244_2007033_+	chromosomal replication initiator DnaA	Q4ZBM5	Staphylococcus_phage	2.6e-142	100.0
AUJ57671.1\|2007061_2007613_+	single-stranded DNA-binding protein	Q4ZBM4	Staphylococcus_phage	3.4e-101	100.0
AUJ57672.1\|2007625_2008318_+	hypothetical protein	Q4ZAZ0	Staphylococcus_virus	2.0e-130	98.3
AUJ57673.1\|2008289_2009093_+	replication protein	A0A2H4JCF5	uncultured_Caudovirales_phage	1.1e-121	100.0
AUJ57674.1\|2009102_2009876_+	DNA replication protein DnaC	A0A2I6PDA0	Staphylococcus_phage	2.7e-144	99.6
AUJ57675.1\|2009869_2010028_+	hypothetical protein	A0A2I6PDX0	Staphylococcus_phage	5.8e-22	96.2
AUJ57676.1\|2010040_2010262_+	hypothetical protein	A0A0H3U2V4	Staphylococcus_phage	2.2e-35	100.0
AUJ57677.1\|2010272_2010677_+	hypothetical protein	A7TWN5	Staphylococcus_phage	7.1e-72	100.0
AUJ57678.1\|2010681_2010867_+	hypothetical protein	A0A1X9H0T9	Staphylococcus_phage	6.0e-26	95.1
AUJ57679.1\|2010867_2011485_+	hypothetical protein	A0A0H3U4U9	Staphylococcus_phage	1.2e-83	99.5
AUJ57680.1\|2011484_2011739_+	hypothetical protein	A0A2K9VBW1	Staphylococcus_phage	1.6e-42	100.0
AUJ57681.1\|2011738_2011987_+	hypothetical protein	A0A2I6PDB4	Staphylococcus_phage	2.1e-42	100.0
AUJ57682.1\|2012001_2012208_+	hypothetical protein	A0A2I6PDB7	Staphylococcus_phage	1.3e-34	100.0
AUJ57683.1\|2012210_2012615_+	hypothetical protein	A0A0E3T8H9	Staphylococcus_phage	6.0e-71	98.5
AUJ57684.1\|2012611_2012806_+	hypothetical protein	A0A0E3XCV8	Staphylococcus_phage	2.5e-27	100.0
AUJ57685.1\|2012802_2013174_+	hypothetical protein	I1W606	Staphylococcus_phage	1.6e-65	100.0
AUJ57686.1\|2013170_2013560_+	acetyltransferase	I1W604	Staphylococcus_phage	1.4e-69	100.0
AUJ57687.1\|2013552_2013807_+	hypothetical protein	A7TWH5	Staphylococcus_phage	6.1e-37	92.9
AUJ57688.1\|2013769_2013964_+	hypothetical protein	M1SVE4	Staphylococcus_phage	1.3e-23	93.4
AUJ57689.1\|2013956_2014469_+	dUTP pyrophosphatase	Q4ZDG4	Staphylococcus_virus	2.8e-89	98.8
AUJ57690.1\|2014505_2014793_+	DUF1381 domain-containing protein	Q4ZAB6	Staphylococcus_virus	4.4e-44	96.8
AUJ57691.1\|2014785_2015022_+	hypothetical protein	A0A2I6PEM4	Staphylococcus_phage	2.0e-34	94.9
AUJ57692.1\|2015005_2015401_+	hypothetical protein	M9QX07	Staphylococcus_phage	1.3e-62	94.7
AUJ57693.1\|2015397_2015571_+	transcriptional regulator	A0A0H3U4U1	Staphylococcus_phage	1.9e-21	96.5
AUJ57694.1\|2015571_2015718_+	hypothetical protein	B2ZYX7	Staphylococcus_phage	3.7e-15	97.9
AUJ57695.1\|2015741_2016164_+	transcriptional regulator	A0A0F6N3E5	Staphylococcus_phage	2.7e-74	99.3
AUJ57696.1\|2016494_2016989_+\|terminase	terminase	A0A059T7P8	Staphylococcus_phage	1.1e-74	99.4
AUJ57697.1\|2016981_2018205_+\|terminase	terminase	A0A0N9BAX9	Staphylococcus_phage	7.5e-242	100.0
AUJ57698.1\|2018201_2019626_+\|portal	phage portal protein	A0A0E3T9I6	Staphylococcus_phage	4.8e-272	100.0
AUJ57699.1\|2019594_2020545_+\|head	phage head morphogenesis protein	M9NST7	Staphylococcus_phage	2.3e-177	100.0
AUJ57700.1\|2020548_2020782_+	hypothetical protein	M9NUJ2	Staphylococcus_phage	2.5e-37	100.0
AUJ57701.1\|2020885_2021470_+	hypothetical protein	M9NRJ1	Staphylococcus_phage	9.9e-75	99.5
AUJ57702.1\|2021486_2022401_+\|capsid	major capsid protein	A0A059T7K3	Staphylococcus_phage	1.3e-169	99.3
AUJ58483.1\|2022561_2022912_+\|head,tail	phage head-tail adapter protein	A0A0H3U2R5	Staphylococcus_phage	3.2e-60	99.1
AUJ57703.1\|2022923_2023259_+\|head,tail	phage head-tail adapter protein	M9NUJ3	Staphylococcus_phage	1.3e-58	98.2
AUJ57704.1\|2023245_2023659_+	hypothetical protein	A0A0N9BAY5	Staphylococcus_phage	2.0e-74	98.5
AUJ57705.1\|2023671_2024097_+	hypothetical protein	Q4ZBQ9	Staphylococcus_phage	2.3e-73	98.6
AUJ57706.1\|2024097_2024655_+\|tail	phage tail protein	A0A059T675	Staphylococcus_phage	4.1e-102	100.0
AUJ57707.1\|2024721_2025234_+	hypothetical protein	A0A059T5B1	Staphylococcus_phage	1.2e-92	99.4
AUJ57708.1\|2025278_2025563_+	hypothetical protein	A0A059T626	Staphylococcus_phage	9.8e-44	96.8
AUJ57709.1\|2025566_2028452_+\|terminase	terminase	M9NRJ5	Staphylococcus_phage	2.3e-310	92.2
AUJ57710.1\|2028466_2029408_+\|tail	phage tail protein	A0A059T7K5	Staphylococcus_phage	4.5e-178	98.1
AUJ57711.1\|2029418_2031305_+	peptidase	A0A059T677	Staphylococcus_phage	0.0e+00	97.8
AUJ57712.1\|2031317_2033216_+	hypothetical protein	A0A0H3U448	Staphylococcus_phage	0.0e+00	95.1
AUJ57713.1\|2033215_2035039_+	hypothetical protein	B1H3M3	Staphylococcus_phage	0.0e+00	99.8
AUJ57714.1\|2035038_2035416_+	hypothetical protein	Q8LTH7	Staphylococcus_phage	7.3e-55	100.0
AUJ58484.1\|2035419_2035593_+	XkdX family protein	A0A059T7K6	Staphylococcus_phage	1.3e-27	100.0
AUJ57715.1\|2035633_2035933_+	hypothetical protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
AUJ57716.1\|2036069_2037944_+	CHAP domain-containing protein	Q4ZBP7	Staphylococcus_phage	0.0e+00	97.8
AUJ57717.1\|2037956_2040551_+\|tail	phage tail protein	Q4ZC48	Staphylococcus_virus	1.1e-271	57.0
AUJ57718.1\|2040606_2041044_+\|holin	phage holin	A7YGY0	Staphylococcus_virus	2.2e-71	97.2
AUJ57719.1\|2041024_2042470_+	autolysin	Q08JW9	Staphylococcus_phage	5.7e-289	97.7
AUJ57720.1\|2042868_2043024_+	hypothetical protein	NA	NA	NA	NA
AUJ57721.1\|2042998_2043205_+	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	9.9e-30	98.5
AUJ57722.1\|2043218_2043419_+	hypothetical protein	A0A2H4PQS9	Staphylococcus_phage	3.5e-32	100.0
AUJ57723.1\|2043708_2044815_-\|integrase	site-specific integrase	A0A1B2AQ00	Phage_Wrath	1.2e-76	43.0
AUJ57724.1\|2044804_2045608_-	transcriptional regulator	A0A2H4JC02	uncultured_Caudovirales_phage	5.3e-10	55.9
AUJ57725.1\|2045743_2045947_+	transcriptional regulator	NA	NA	NA	NA
AUJ57726.1\|2045982_2046201_+	transcriptional regulator	NA	NA	NA	NA
AUJ57727.1\|2046212_2046368_+	pathogenicity island protein	NA	NA	NA	NA
AUJ57728.1\|2046351_2046657_+	pathogenicity island protein	Q4ZE75	Staphylococcus_phage	3.1e-43	88.1
AUJ57729.1\|2046731_2048342_+	phage resistance protein	A0A1W6JPF4	Staphylococcus_phage	4.0e-243	77.6
AUJ57730.1\|2048517_2049321_+	DNA primase	Q4ZE69	Staphylococcus_phage	1.3e-149	96.3
AUJ57731.1\|2049307_2049580_+	pathogenicity island protein	Q4ZE68	Staphylococcus_phage	2.0e-41	92.2
AUJ57732.1\|2049581_2050223_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	4.2e-111	93.0
2050503:2050523	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2355625 : 2367934

uncultured_Caudovirales_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ58491.1\|2355625_2356039_+	hypothetical protein	A0A1Q1PVU5	Staphylococcus_phage	5.1e-17	39.1
AUJ58492.1\|2356269_2356350_-	hypothetical protein	NA	NA	NA	NA
AUJ58053.1\|2356402_2356507_-	hypothetical protein	NA	NA	NA	NA
AUJ58054.1\|2356639_2357611_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
AUJ58055.1\|2357728_2359834_-	ribonucleotide-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
AUJ58056.1\|2359796_2360195_-	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
AUJ58057.1\|2360344_2360611_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
AUJ58058.1\|2360995_2361862_+	EamA family transporter	NA	NA	NA	NA
AUJ58059.1\|2361881_2362382_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
AUJ58060.1\|2362411_2362657_+	hypothetical protein	NA	NA	NA	NA
AUJ58061.1\|2362722_2364228_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
AUJ58062.1\|2364305_2364407_-	hypothetical protein	NA	NA	NA	NA
AUJ58063.1\|2364497_2365415_+	lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
AUJ58064.1\|2365848_2365941_+	hypothetical protein	NA	NA	NA	NA
AUJ58065.1\|2366038_2366581_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
AUJ58066.1\|2366728_2366854_-	hypothetical protein	NA	NA	NA	NA
AUJ58067.1\|2366875_2367934_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	1.1e-20	27.3

DBSCAN-SWA_9

2379906 : 2387725

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ58077.1\|2379906_2381058_-	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	1.2e-23	36.1
AUJ58078.1\|2381041_2381635_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
AUJ58079.1\|2381985_2382654_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
AUJ58080.1\|2382655_2383075_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
AUJ58081.1\|2383078_2383792_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
AUJ58082.1\|2383890_2384475_+	hypothetical protein	NA	NA	NA	NA
AUJ58083.1\|2384754_2385195_+	hypothetical protein	NA	NA	NA	NA
AUJ58084.1\|2385535_2386009_+	DoxX family protein	NA	NA	NA	NA
AUJ58085.1\|2385983_2386670_+	DNA-binding response regulator	NA	NA	NA	NA
AUJ58086.1\|2386669_2387725_+	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	1.6e-14	29.5

DBSCAN-SWA_10

2514429 : 2525788

Staphylococcus_phage(61.54%)

integrase

attL 2516160:2516185|attR 2528911:2528936

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ58208.1\|2514429_2515782_-	carboxylesterase	A0A0B5J865	Pandoravirus	2.5e-12	34.2
AUJ58497.1\|2516071_2516254_+	DUF3125 domain-containing protein	NA	NA	NA	NA
2516160:2516185	attL	NA	NA	NA	NA
AUJ58209.1\|2516503_2517145_-	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	1.4e-109	92.0
AUJ58210.1\|2517141_2517522_-	hypothetical protein	Q4ZE71	Staphylococcus_phage	3.2e-66	96.0
AUJ58211.1\|2517851_2519552_-	hypothetical protein	Q4ZE73	Staphylococcus_phage	1.3e-308	95.2
AUJ58212.1\|2519565_2520435_-	mobile element-associated protein	Q4ZE74	Staphylococcus_phage	1.5e-164	96.2
AUJ58213.1\|2520501_2520822_-	pathogenicity island protein	A0A1W6JQH0	Staphylococcus_phage	6.5e-20	58.2
AUJ58214.1\|2520824_2521034_-	pathogenicity island protein	Q4ZE76	Staphylococcus_phage	1.7e-29	94.2
AUJ58215.1\|2521026_2521173_-	pathogenicity island protein	NA	NA	NA	NA
AUJ58216.1\|2521169_2521487_-	excisionase	A0A1W6JQE0	Staphylococcus_phage	1.6e-50	97.1
AUJ58217.1\|2521491_2521710_-	transcriptional regulator	A0A2H4JB11	uncultured_Caudovirales_phage	1.3e-19	66.7
AUJ58218.1\|2521882_2522557_+	transcriptional regulator	A0A2H4JGT9	uncultured_Caudovirales_phage	1.6e-39	45.8
AUJ58219.1\|2522570_2523743_+\|integrase	site-specific integrase	A0A1W6JQD3	Staphylococcus_phage	1.3e-219	97.9
AUJ58220.1\|2523811_2525428_-	molecular chaperone GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
AUJ58221.1\|2525503_2525788_-	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
2528911:2528936	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage