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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP036303 Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 plasmid p2_015093, complete sequence 0 crisprs NA 0 0 0 0
CP036302 Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 plasmid p1_015093, complete sequence 0 crisprs csa3,RT 0 0 2 0
CP036300 Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 chromosome, complete genome 1 crisprs csa3,RT,cas3,DEDDh,DinG,WYL 0 0 13 0
CP036304 Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 plasmid p3_015093, complete sequence 0 crisprs NA 0 0 0 0
CP036301 Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015093 plasmid pKPC2_015093, complete sequence 0 crisprs RT 0 0 3 0

Results visualization

1. CP036302
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1727 : 66699 58 uncultured_Caudovirales_phage(26.32%) transposase,protease,integrase NA
DBSCAN-SWA_2 73168 : 96732 27 Escherichia_phage(50.0%) transposase,protease,integrase attL 75140:75199|attR 85317:86654
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP036300
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP036300_1 4614090-4614184 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 448576 : 517954 74 uncultured_Caudovirales_phage(61.11%) capsid,integrase,tail,tRNA,protease,terminase,head,portal attL 466184:466201|attR 482179:482196
DBSCAN-SWA_2 1218042 : 1267186 63 Salmonella_phage(80.0%) capsid,integrase,tail,tRNA,terminase,transposase,lysis,plate,head,coat,portal attL 1208153:1208170|attR 1246720:1246737
DBSCAN-SWA_3 1371902 : 1424645 61 Salmonella_phage(40.38%) terminase,tail,transposase,holin NA
DBSCAN-SWA_4 1756996 : 1763901 6 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_5 1807246 : 1818921 10 Escherichia_phage(33.33%) transposase NA
DBSCAN-SWA_6 2815218 : 2826105 9 Escherichia_phage(87.5%) NA NA
DBSCAN-SWA_7 3009507 : 3082204 86 uncultured_Caudovirales_phage(32.08%) tail,terminase,transposase,lysis,plate,head NA
DBSCAN-SWA_8 3115137 : 3146016 42 Enterobacteria_phage(38.71%) integrase,transposase,holin attL 3114919:3114934|attR 3143322:3143337
DBSCAN-SWA_9 3273688 : 3361567 97 Klebsiella_phage(45.45%) capsid,tail,integrase,tRNA,holin,terminase,head,portal attL 3300491:3300505|attR 3359378:3359392
DBSCAN-SWA_10 3471142 : 3527301 63 Enterobacteria_phage(40.0%) capsid,tail,integrase,protease,terminase,plate,head,portal attL 3469302:3469322|attR 3503826:3503846
DBSCAN-SWA_11 3612070 : 3699020 87 Salmonella_phage(49.02%) capsid,tail,integrase,tRNA,protease,terminase,transposase,lysis,plate,head,portal attL 3667596:3667614|attR 3699095:3699113
DBSCAN-SWA_12 4350803 : 4362456 13 Enterobacteria_phage(70.0%) NA NA
DBSCAN-SWA_13 4830693 : 4839506 9 Enterobacteria_phage(83.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP036301
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1796 : 21998 18 Escherichia_phage(53.85%) transposase,protease NA
DBSCAN-SWA_2 79076 : 92882 18 Enterobacteria_phage(18.18%) transposase NA
DBSCAN-SWA_3 123399 : 134558 11 Escherichia_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage