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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029379 Klebsiella pneumoniae subsp. pneumoniae strain SCKP020079 plasmid p1_020079, complete sequence 0 crisprs RT 0 0 0 0
CP029381 Klebsiella pneumoniae subsp. pneumoniae strain SCKP020079 plasmid pKPC2_020079, complete sequence 0 crisprs RT 0 0 2 0
CP029382 Klebsiella pneumoniae subsp. pneumoniae strain SCKP020079 plasmid pQnrS1_020079, complete sequence 0 crisprs NA 0 0 9 0
CP029383 Klebsiella pneumoniae subsp. pneumoniae strain SCKP020079 plasmid pVir_020079, complete sequence 0 crisprs NA 0 0 3 0
CP029380 Klebsiella pneumoniae subsp. pneumoniae strain SCKP020079 plasmid p2_020079, complete sequence 0 crisprs NA 0 0 0 0
CP029384 Klebsiella pneumoniae subsp. pneumoniae strain SCKP020079 chromosome, complete genome 1 crisprs csa3,RT,cas3,DEDDh,DinG,WYL 0 0 11 0

Results visualization

1. CP029382
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 17012 20 Escherichia_phage(27.27%) transposase,integrase attL 799:858|attR 14085:14906
DBSCAN-SWA_2 20066 : 20600 1 Wolbachia_phage(100.0%) NA NA
DBSCAN-SWA_3 39095 : 42509 1 Alteromonas_phage(100.0%) NA NA
DBSCAN-SWA_4 49622 : 51317 1 Hokovirus(100.0%) NA NA
DBSCAN-SWA_5 58825 : 59686 1 Marinomonas_phage(100.0%) NA NA
DBSCAN-SWA_6 63081 : 65922 4 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_7 69339 : 72003 5 Shigella_phage(25.0%) NA NA
DBSCAN-SWA_8 76463 : 77321 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_9 83829 : 84534 1 Escherichia_phage(100.0%) transposase NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP029383
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 6617 : 66699 54 Escherichia_phage(27.27%) transposase,integrase NA
DBSCAN-SWA_2 104627 : 153472 43 Bacillus_phage(28.57%) transposase NA
DBSCAN-SWA_3 170713 : 178142 7 Stx2-converting_phage(28.57%) transposase NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP029384
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029384_1 4622153-4622247 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 450003 : 520581 76 uncultured_Caudovirales_phage(57.89%) tRNA,protease,terminase,integrase,tail,capsid,transposase,portal,head attL 468811:468828|attR 484806:484823
DBSCAN-SWA_2 1211316 : 1260460 63 Salmonella_phage(80.0%) plate,tRNA,integrase,tail,lysis,capsid,coat,transposase,portal,head attL 1209721:1209738|attR 1239994:1240011
DBSCAN-SWA_3 1366482 : 1420425 64 Salmonella_phage(38.46%) transposase,terminase,holin,tail NA
DBSCAN-SWA_4 1759038 : 1765943 6 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_5 1809288 : 1820312 10 Escherichia_phage(33.33%) transposase NA
DBSCAN-SWA_6 2812660 : 2823548 10 Escherichia_phage(87.5%) NA NA
DBSCAN-SWA_7 3016813 : 3089510 84 uncultured_Caudovirales_phage(33.33%) plate,protease,terminase,tail,lysis,transposase,head NA
DBSCAN-SWA_8 3122443 : 3176536 64 Enterobacteria_phage(33.33%) transposase,integrase,protease,holin attL 3122225:3122240|attR 3151894:3151909
DBSCAN-SWA_9 3282260 : 3414249 152 Klebsiella_phage(31.18%) holin,tRNA,protease,terminase,tail,integrase,capsid,head,transposase,portal attL 3309063:3309077|attR 3412060:3412074
DBSCAN-SWA_10 3630228 : 3723179 97 Salmonella_phage(56.9%) plate,tRNA,protease,tail,integrase,lysis,capsid,head,portal attL 3685754:3685772|attR 3723254:3723272
DBSCAN-SWA_11 4358866 : 4370519 13 Enterobacteria_phage(70.0%) NA NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. CP029381
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1796 : 16424 13 Escherichia_phage(62.5%) protease,transposase NA
DBSCAN-SWA_2 67156 : 114609 47 Escherichia_phage(47.83%) integrase,transposase attL 81715:81729|attR 103995:104009

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage