CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP028784	Klebsiella pneumoniae strain SCKP020049 plasmid p1_020049, complete sequence	0 crisprs	csa3,cas3,RT	0	2
CP028785	Klebsiella pneumoniae strain SCKP020049 plasmid p2_020049, complete sequence	0 crisprs	NA	0	0
CP028787	Klebsiella pneumoniae strain SCKP020049 chromosome, complete genome	2 crisprs	WYL,csa3,cas3,DEDDh,DinG,RT	1	9
CP028786	Klebsiella pneumoniae strain SCKP020049 plasmid pNDM1_020049, complete sequence	0 crisprs	NA	0	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1727 : 61239

uncultured_Caudovirales_phage(29.41%)

integrase,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA60411.1\|1727_2468_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
AWA60412.1\|3379_3607_+	hypothetical protein	NA	NA	NA	NA
AWA60413.1\|3654_4635_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	2.3e-185	99.1
AWA60414.1\|4954_6391_+	EAL domain-containing protein	NA	NA	NA	NA
AWA60415.1\|7373_8651_-	DUF2254 domain-containing protein	NA	NA	NA	NA
AWA60416.1\|8713_10717_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
AWA60575.1\|11750_12958_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
AWA60417.1\|14386_14818_-	silver-binding protein SilE	NA	NA	NA	NA
AWA60418.1\|15068_16544_-	Cu(+)/Ag(+) sensor histidine kinase	W8CYF6	Bacillus_phage	1.0e-27	30.1
AWA60419.1\|16536_17217_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.1e-31	35.6
AWA60420.1\|17406_18792_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
AWA60421.1\|18820_19174_+	copper ABC transporter substrate-binding protein	NA	NA	NA	NA
AWA60422.1\|19287_20580_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AWA60423.1\|20590_23737_+	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	4.0e-61	22.5
AWA60424.1\|23823_24264_+	hypothetical protein	NA	NA	NA	NA
AWA60425.1\|24390_26838_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.6e-84	35.8
AWA60426.1\|26878_27076_+	DUF2933 domain-containing protein	NA	NA	NA	NA
AWA60427.1\|27109_27847_-	peptidase M23	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
AWA60428.1\|28135_28585_-	copper resistance protein	NA	NA	NA	NA
AWA60429.1\|28818_30636_+	multicopper oxidase PcoA	NA	NA	NA	NA
AWA60430.1\|30635_31532_+	copper resistance protein B	NA	NA	NA	NA
AWA60431.1\|31571_31952_+	copper resistance system chaperone PcoC	NA	NA	NA	NA
AWA60432.1\|31956_32886_+	copper resistance protein D	NA	NA	NA	NA
AWA60433.1\|32940_33621_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.7e-30	34.4
AWA60434.1\|33617_35018_+	sensor histidine kinase	W8CYF6	Bacillus_phage	4.1e-18	26.3
AWA60435.1\|35234_35669_+	copper-binding protein	NA	NA	NA	NA
AWA60576.1\|35900_36080_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AWA60436.1\|37822_38332_+	porin	NA	NA	NA	NA
AWA60577.1\|38381_38879_-	N-acetyltransferase	NA	NA	NA	NA
AWA60437.1\|39210_39537_+	transcriptional regulator	NA	NA	NA	NA
AWA60578.1\|39536_40247_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0
AWA60438.1\|40255_40801_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
AWA60439.1\|40876_41239_+	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
AWA60440.1\|43135_43672_+	N-acetyltransferase	NA	NA	NA	NA
AWA60441.1\|43704_44130_-	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9
AWA60442.1\|44142_45432_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
AWA60443.1\|45479_47231_-	arsenical pump-driving ATPase	NA	NA	NA	NA
AWA60444.1\|47248_47611_-	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
AWA60445.1\|47660_48011_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
AWA60446.1\|48368_48638_+	hypothetical protein	NA	NA	NA	NA
AWA60447.1\|48625_49201_+	hypothetical protein	NA	NA	NA	NA
AWA60448.1\|49231_49726_+	DNA-binding protein	NA	NA	NA	NA
AWA60449.1\|49769_50138_+	hypothetical protein	NA	NA	NA	NA
AWA60450.1\|50171_50375_+	hemolysin expression modulator Hha	NA	NA	NA	NA
AWA60451.1\|50423_50681_+	hypothetical protein	NA	NA	NA	NA
AWA60452.1\|50710_50899_-	hypothetical protein	NA	NA	NA	NA
AWA60453.1\|50897_51878_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
AWA60579.2\|52001_52211_+	hypothetical protein	NA	NA	NA	NA
AWA60455.1\|52386_52653_+	DUF1778 domain-containing protein	NA	NA	NA	NA
AWA60456.1\|52640_53123_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AWA60457.1\|53323_54727_+\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
AWA60580.1\|54755_55388_-	hypothetical protein	NA	NA	NA	NA
AWA60458.1\|55606_57010_+\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
AWA60581.1\|57038_57671_-	hypothetical protein	NA	NA	NA	NA
AWA60582.1\|57900_59247_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
AWA60459.1\|60534_61239_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

83636 : 117740

Bacillus_virus(16.67%)

integrase,transposase,bacteriocin

attL 79986:80003|attR 120772:120789

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
79986:80003	attL	NA	NA	NA	NA
AWA60479.1\|83636_83804_-\|integrase	integrase	NA	NA	NA	NA
AWA60480.1\|84906_85428_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
AWA60481.1\|85424_86378_+	fec operon regulator FecR	NA	NA	NA	NA
AWA60482.1\|86463_88788_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
AWA60483.1\|88832_89735_+	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
AWA60484.1\|89731_90730_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
AWA60485.1\|90726_91683_+	iron-dicitrate ABC transporter permease FecD	NA	NA	NA	NA
AWA60486.1\|91683_92451_+	iron-dicitrate ABC transporter ATP-binding subunit	G3M9Y6	Bacillus_virus	9.8e-14	25.2
AWA60487.1\|92549_92843_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
AWA60584.1\|93173_93416_-	EAL domain-containing protein	NA	NA	NA	NA
AWA60488.1\|93713_94718_-\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
AWA60489.1\|95121_96132_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
AWA60490.1\|96154_96370_-	hypothetical protein	NA	NA	NA	NA
AWA60491.1\|96592_97675_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	6.8e-186	96.4
AWA60492.1\|97796_100871_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.7
AWA60493.1\|100922_102176_+	MFS transporter	NA	NA	NA	NA
AWA60494.1\|102312_103236_+\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	1.4e-176	99.7
AWA60495.1\|103880_106190_+	ATPase	NA	NA	NA	NA
AWA60496.1\|106193_107510_+	ATP-binding protein	NA	NA	NA	NA
AWA60497.1\|107506_109702_+	DEAD/DEAH box helicase	NA	NA	NA	NA
AWA60585.1\|110323_110512_+	hypothetical protein	NA	NA	NA	NA
AWA60498.1\|110655_110844_+	hypothetical protein	NA	NA	NA	NA
AWA60499.1\|111148_112006_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
AWA60586.1\|111998_112076_-	RepA leader peptide Tap	NA	NA	NA	NA
AWA60500.1\|112292_112571_-	replication regulatory protein RepA	NA	NA	NA	NA
AWA60587.1\|112891_113443_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.1e-19	35.2
AWA60501.1\|113711_113990_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
AWA60502.1\|113991_116313_-\|bacteriocin	klebicin B-related nuclease bacteriocin	NA	NA	NA	NA
AWA60503.1\|116519_117740_+\|transposase	ISL3-like element ISKox3 family transposase	NA	NA	NA	NA
120772:120789	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP028786

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 36370

Escherichia_phage(50.0%)

transposase,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA60645.1\|758_1214_+	DNA-binding protein	NA	NA	NA	NA
AWA60646.1\|1251_1902_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
AWA60647.1\|2174_2354_+	hypothetical protein	NA	NA	NA	NA
AWA60648.1\|2350_3172_+	sprT domain-containing protein	NA	NA	NA	NA
AWA60649.1\|3281_3536_+	hypothetical protein	NA	NA	NA	NA
AWA60650.1\|3553_3829_+	hypothetical protein	NA	NA	NA	NA
AWA60664.1\|3891_4104_+	hypothetical protein	NA	NA	NA	NA
AWA60651.1\|4061_4247_+	hypothetical protein	NA	NA	NA	NA
AWA60652.1\|10043_11060_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
AWA60653.1\|11473_12286_+	subclass B1 metallo-beta-lactamase NDM-1	NA	NA	NA	NA
AWA60654.1\|12289_12655_+	bleomycin binding protein Ble-MBL	NA	NA	NA	NA
AWA60655.1\|12659_13298_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
AWA60656.1\|13308_14340_-	twin-arginine translocation (TAT) pathway signal sequence domain protein	NA	NA	NA	NA
AWA60657.1\|14344_14674_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA
AWA60658.1\|14867_15158_+	co-chaperone GroES	A0A221S322	uncultured_virus	2.1e-17	47.8
AWA60600.1\|15213_16854_+	chaperonin GroEL	A0A219YK78	uncultured_virus	8.2e-175	62.1
AWA60601.1\|17042_18572_+\|transposase	IS91 family transposase	NA	NA	NA	NA
AWA60602.1\|18532_18727_-	hypothetical protein	NA	NA	NA	NA
AWA60659.1\|18782_19058_-	hypothetical protein	NA	NA	NA	NA
AWA60603.1\|19087_19792_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWA60604.1\|19782_19965_+	hypothetical protein	NA	NA	NA	NA
AWA60605.1\|19928_20789_+	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
AWA60606.1\|20809_21571_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AWA60607.1\|21561_21795_+	hypothetical protein	NA	NA	NA	NA
AWA60608.1\|22411_23116_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AWA60609.1\|23149_23506_-	sOS mutagenesis and repair protein UmuD	A0A222YZE2	Escherichia_phage	5.5e-20	46.6
AWA60610.1\|23508_23748_-	DNA polymerase V	I6PD82	Cronobacter_phage	4.4e-21	55.1
AWA60611.1\|23849_25070_+\|transposase	ISL3-like element ISKox3 family transposase	NA	NA	NA	NA
AWA60660.1\|25158_25821_-	resolvase	M9Q1K0	Clostridium_phage	9.7e-10	29.1
AWA60612.1\|26201_26864_+	peptidyl-arginine deiminase	E5FFJ3	Burkholderia_phage	2.6e-07	25.2
AWA60613.1\|26963_27248_+	CopG family transcriptional regulator	NA	NA	NA	NA
AWA60614.1\|27453_27765_+	hypothetical protein	NA	NA	NA	NA
AWA60615.1\|27800_28085_+	hypothetical protein	NA	NA	NA	NA
AWA60661.1\|28105_28459_-	DNA distortion polypeptide 3	NA	NA	NA	NA
AWA60662.1\|28646_29090_-	hypothetical protein	NA	NA	NA	NA
AWA60616.1\|29098_30112_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA
AWA60617.1\|31464_31980_+	molecular chaperone DnaJ	A0A2K9L588	Tupanvirus	3.3e-05	39.8
AWA60618.1\|32038_32275_+	hypothetical protein	NA	NA	NA	NA
AWA60619.1\|32334_32886_+	hypothetical protein	NA	NA	NA	NA
AWA60620.1\|32951_33164_+	hypothetical protein	NA	NA	NA	NA
AWA60621.1\|33153_33396_+	hypothetical protein	NA	NA	NA	NA
AWA60622.1\|33489_33828_+	hypothetical protein	NA	NA	NA	NA
AWA60623.1\|34201_34417_-	hypothetical protein	NA	NA	NA	NA
AWA60663.1\|34661_35207_+	DNA distortion polypeptide 1	NA	NA	NA	NA
AWA60624.1\|35209_36370_+\|coat	spore coat protein CotH	NA	NA	NA	NA

DBSCAN-SWA_2

50611 : 52451

Moraxella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA60642.1\|50611_51106_+	micrococcal nuclease	A0A0R6PHV6	Moraxella_phage	8.0e-17	37.3
AWA60643.1\|51188_52451_+	ATP-binding protein	A0A1V0SKF8	Klosneuvirus	1.3e-07	31.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP028787

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP028787_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028787_2

4153267-4153395

Orphan

Consensus_repeat	Method
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028787_2

>merge|CP028787|2|4153267-4153395|CRISPRCasFinder
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAAC

>CP028787|2|2|4153267-4153395|CRISPRCasFinder
TGCCGGGTGGCAGCTGGCGCCTTACCCGGCCTACAAAAC	CGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP028787.2\|AWA64496.1\|4159450_4159660_+\|hypothetical-protein	unknown	unknown	unknown
CP028787.2\|AWA64486.1\|4150680_4151133_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
CP028787.2\|AWA64497.1\|4159905_4160646_+\|transpeptidase	unknown	unknown	gnl\|CDD\|225577
CP028787.2\|AWA64489.1\|4153433_4153649_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
CP028787.2\|AWA64498.1\|4160616_4161384_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
CP028787.2\|AWA65615.1\|4144434_4145835_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
CP028787.2\|AWA64484.1\|4148464_4148923_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
CP028787.2\|AWA64480.1\|4143001_4144285_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
CP028787.2\|AWA64493.1\|4156121_4156916_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
CP028787.2\|AWA64483.1\|4147114_4148359_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
CP028787.2\|AWA64491.1\|4154887_4155484_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
CP028787.2\|AWA64490.1\|4153651_4154875_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
CP028787.2\|AWA64485.1\|4149180_4150638_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
CP028787.2\|AWA64481.1\|4145880_4146573_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
CP028787.2\|AWA64492.1\|4155490_4156129_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
CP028787.2\|AWA64488.1\|4152350_4153211_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
CP028787.2\|AWA64494.1\|4156908_4158147_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
CP028787.2\|AWA64495.1\|4158150_4159494_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	unknown	unknown	gnl\|CDD\|235426
CP028787.2\|AWA64482.1\|4146658_4147057_-\|Crl-family-RNA-polymerase-assembly-factor	unknown	unknown	gnl\|CDD\|182882
CP028787.2\|AWA64487.1\|4151135_4152191_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035

Protein	Function_ID	Function_description	E-value
CP028787.2\|AWA64486.1\|4150680_4151133_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.92264e-85
CP028787.2\|AWA64497.1\|4159905_4160646_+\|transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109
CP028787.2\|AWA64489.1\|4153433_4153649_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	5.41902e-29
CP028787.2\|AWA64498.1\|4160616_4161384_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
CP028787.2\|AWA65615.1\|4144434_4145835_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
CP028787.2\|AWA64484.1\|4148464_4148923_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
CP028787.2\|AWA64480.1\|4143001_4144285_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
CP028787.2\|AWA64493.1\|4156121_4156916_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.16359e-153
CP028787.2\|AWA64483.1\|4147114_4148359_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP028787.2\|AWA64491.1\|4154887_4155484_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
CP028787.2\|AWA64490.1\|4153651_4154875_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
CP028787.2\|AWA64485.1\|4149180_4150638_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
CP028787.2\|AWA64481.1\|4145880_4146573_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	3.98097e-151
CP028787.2\|AWA64492.1\|4155490_4156129_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	9.27315e-142
CP028787.2\|AWA64488.1\|4152350_4153211_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	1.90819e-128
CP028787.2\|AWA64494.1\|4156908_4158147_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
CP028787.2\|AWA64495.1\|4158150_4159494_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
CP028787.2\|AWA64482.1\|4146658_4147057_-\|Crl-family-RNA-polymerase-assembly-factor	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	3.74492e-83
CP028787.2\|AWA64487.1\|4151135_4152191_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0

>CP028787.2|AWA64488.1|4152350_4153211_+|glycerophosphodiester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRMAIELGADGVMVDSPAQAKSWQ
>CP028787.2|AWA64487.1|4151135_4152191_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>CP028787.2|AWA64486.1|4150680_4151133_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>CP028787.2|AWA64485.1|4149180_4150638_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLVEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>CP028787.2|AWA64484.1|4148464_4148923_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>CP028787.2|AWA64483.1|4147114_4148359_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>CP028787.2|AWA64482.1|4146658_4147057_-|Crl-family-RNA-polymerase-assembly-factor
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIGDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>CP028787.2|AWA64481.1|4145880_4146573_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARTHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>CP028787.2|AWA65615.1|4144434_4145835_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>CP028787.2|AWA64480.1|4143001_4144285_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNRAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQVVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDRSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLKIIADCFSEAKQA
>CP028787.2|AWA64489.1|4153433_4153649_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVILGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>CP028787.2|AWA64490.1|4153651_4154875_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>CP028787.2|AWA64491.1|4154887_4155484_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>CP028787.2|AWA64492.1|4155490_4156129_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDIKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>CP028787.2|AWA64493.1|4156121_4156916_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPDMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>CP028787.2|AWA64494.1|4156908_4158147_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGTEQLQQTIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYLTVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>CP028787.2|AWA64495.1|4158150_4159494_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>CP028787.2|AWA64496.1|4159450_4159660_+|hypothetical-protein
MPAMGKSSPFVILIISLAGIRNLNPDAGQGQLIDRMAEKKGRNGASSAQDGREASFLTLMMNRRKCNIS
>CP028787.2|AWA64497.1|4159905_4160646_+|transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>CP028787.2|AWA64498.1|4160616_4161384_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV

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Crispr_ID: CP028787_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028787_3

4370234-4370328

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028787_3

>merge|CP028787|3|4370234-4370328|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>CP028787|3|3|4370234-4370328|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP028787.2\|AWA64671.1\|4368780_4370145_-\|malate-permease	unknown	unknown	gnl\|CDD\|377030
CP028787.2\|AWA64679.1\|4379391_4379769_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP028787.2\|AWA64677.1\|4377581_4378571_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP028787.2\|AWA64663.1\|4356449_4357295_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
CP028787.2\|AWA64675.1\|4373886_4376235_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
CP028787.2\|AWA64666.1\|4360992_4361688_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP028787.2\|AWA64670.1\|4368061_4368601_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
CP028787.2\|AWA64678.1\|4378567_4379389_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
CP028787.2\|AWA64681.1\|4380873_4381353_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
CP028787.2\|AWA64664.1\|4357632_4359342_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP028787.2\|AWA64667.1\|4361863_4364221_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP028787.2\|AWA64676.1\|4376289_4377576_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
CP028787.2\|AWA64673.1\|4372084_4372783_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
CP028787.2\|AWA65625.1\|4368563_4368752_+\|hypothetical-protein	unknown	unknown	unknown
CP028787.2\|AWA64665.1\|4359352_4360855_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP028787.2\|AWA64674.1\|4372815_4373643_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
CP028787.2\|AWA64680.1\|4379773_4380622_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
CP028787.2\|AWA64672.1\|4370469_4372095_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
CP028787.2\|AWA64669.1\|4367327_4367987_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP028787.2\|AWA64668.1\|4364408_4367315_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319

Protein	Function_ID	Function_description	E-value
CP028787.2\|AWA64671.1\|4368780_4370145_-\|malate-permease	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
CP028787.2\|AWA64679.1\|4379391_4379769_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
CP028787.2\|AWA64677.1\|4377581_4378571_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP028787.2\|AWA64663.1\|4356449_4357295_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP028787.2\|AWA64675.1\|4373886_4376235_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP028787.2\|AWA64666.1\|4360992_4361688_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
CP028787.2\|AWA64670.1\|4368061_4368601_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	1.45487e-85
CP028787.2\|AWA64678.1\|4378567_4379389_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
CP028787.2\|AWA64681.1\|4380873_4381353_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
CP028787.2\|AWA64664.1\|4357632_4359342_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP028787.2\|AWA64667.1\|4361863_4364221_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP028787.2\|AWA64676.1\|4376289_4377576_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP028787.2\|AWA64673.1\|4372084_4372783_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	1.50146e-66
CP028787.2\|AWA64665.1\|4359352_4360855_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP028787.2\|AWA64674.1\|4372815_4373643_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
CP028787.2\|AWA64680.1\|4379773_4380622_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP028787.2\|AWA64672.1\|4370469_4372095_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
CP028787.2\|AWA64669.1\|4367327_4367987_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.90078e-161
CP028787.2\|AWA64668.1\|4364408_4367315_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0

>CP028787.2|AWA64671.1|4368780_4370145_-|malate-permease
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>CP028787.2|AWA65625.1|4368563_4368752_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKCDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>CP028787.2|AWA64670.1|4368061_4368601_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVNIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>CP028787.2|AWA64669.1|4367327_4367987_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>CP028787.2|AWA64668.1|4364408_4367315_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>CP028787.2|AWA64667.1|4361863_4364221_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFNASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPADYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>CP028787.2|AWA64666.1|4360992_4361688_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>CP028787.2|AWA64665.1|4359352_4360855_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>CP028787.2|AWA64664.1|4357632_4359342_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLPQTVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGIYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>CP028787.2|AWA64663.1|4356449_4357295_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>CP028787.2|AWA64672.1|4370469_4372095_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>CP028787.2|AWA64673.1|4372084_4372783_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHTTPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>CP028787.2|AWA64674.1|4372815_4373643_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>CP028787.2|AWA64675.1|4373886_4376235_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>CP028787.2|AWA64676.1|4376289_4377576_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>CP028787.2|AWA64677.1|4377581_4378571_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>CP028787.2|AWA64678.1|4378567_4379389_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>CP028787.2|AWA64679.1|4379391_4379769_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>CP028787.2|AWA64680.1|4379773_4380622_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>CP028787.2|AWA64681.1|4380873_4381353_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP028787_1	1.1\|1880161\|30\|CP028787\|CRISPRCasFinder	1880161-1880190	30	NZ_CP022925	Klebsiella pneumoniae strain ST307PT01 plasmid pJYC01B	21741-21770	0	1.0

1. spacer 1.1|1880161|30|CP028787|CRISPRCasFinder matches to NZ_CP022925 (Klebsiella pneumoniae strain ST307PT01 plasmid pJYC01B) position: , mismatch: 0, identity: 1.0

gcattcggcataaacgccatatccaggatt	CRISPR spacer
gcattcggcataaacgccatatccaggatt	Protospacer
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Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1191359 : 1200806

Enterobacteria_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA61792.1\|1191359_1193693_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	84.4
AWA61793.1\|1193707_1194028_-	hypothetical protein	NA	NA	NA	NA
AWA61794.1\|1194024_1194252_-	hypothetical protein	NA	NA	NA	NA
AWA61795.1\|1194248_1194800_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	3.0e-33	70.4
AWA61796.1\|1195612_1196350_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	6.9e-81	66.1
AWA61797.1\|1196346_1196592_+	hypothetical protein	Q7M294	Enterobacteria_phage	3.7e-31	77.8
AWA61798.1\|1196608_1197175_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-56	63.8
AWA61799.1\|1197216_1197324_-	acetyl xylan esterase	NA	NA	NA	NA
AWA61800.1\|1197689_1199582_+	hypothetical protein	NA	NA	NA	NA
AWA61801.1\|1199618_1200806_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	2.4e-107	51.0

DBSCAN-SWA_2

1317111 : 1360327

Salmonella_phage(33.33%)

holin,integrase,tail,transposase,terminase

attL 1314538:1314553|attR 1341946:1341961

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1314538:1314553	attL	NA	NA	NA	NA
AWA61903.1\|1317111_1318578_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
AWA61904.1\|1318645_1320223_+	GMP synthase (glutamine-hydrolyzing)	NA	NA	NA	NA
AWA61905.1\|1320414_1321665_+\|integrase	site-specific integrase	A0A1X9TCT6	Enterobacter_phage	6.8e-206	85.1
AWA61906.1\|1321681_1321873_-	hypothetical protein	NA	NA	NA	NA
AWA61907.1\|1321869_1322463_-	adenine methylase	T1SA14	Salmonella_phage	3.7e-109	91.4
AWA61908.1\|1322459_1322618_-	DUF1317 family protein	T1SAR0	Salmonella_phage	5.1e-18	80.8
AWA61909.1\|1322610_1322904_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	8.9e-32	71.1
AWA61910.1\|1323013_1323262_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
AWA61911.1\|1323310_1324192_-	recombinase RecT	T1SBJ5	Salmonella_phage	6.8e-136	84.3
AWA61912.1\|1324188_1325010_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	6.2e-131	80.6
AWA61913.1\|1325009_1325294_-	hypothetical protein	B5WZV1	Pseudomonas_phage	2.4e-10	44.0
AWA61914.1\|1325290_1325590_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	4.7e-20	54.5
AWA65481.1\|1325597_1326629_-	hypothetical protein	A0A1B0VN89	Pseudomonas_phage	3.6e-35	51.4
AWA61915.1\|1327029_1327611_-	XRE family transcriptional regulator	Q858D7	Salmonella_phage	2.1e-64	64.3
AWA61916.1\|1327764_1327998_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
AWA61917.1\|1328144_1328354_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.4e-26	78.3
AWA61918.1\|1328353_1329115_+	primosomal protein	A0A193GZ86	Enterobacter_phage	1.6e-136	90.2
AWA61919.1\|1329111_1329897_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
AWA61920.1\|1330016_1330364_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.7e-50	83.5
AWA65482.1\|1330556_1331096_+	hypothetical protein	R9TME7	Aeromonas_phage	1.5e-08	41.9
AWA61921.1\|1331372_1332134_+	ead/Ea22-like family protein	C6ZR30	Salmonella_phage	6.8e-07	65.2
AWA61922.1\|1332130_1332310_+	hypothetical protein	NA	NA	NA	NA
AWA61923.1\|1332306_1333050_+	hypothetical protein	K7P7E4	Enterobacteria_phage	3.3e-14	56.6
AWA61924.1\|1333134_1333374_+	hypothetical protein	G8C7S3	Escherichia_phage	1.9e-08	51.7
AWA61925.1\|1333373_1333610_+	hypothetical protein	NA	NA	NA	NA
AWA61926.1\|1333602_1333941_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.9e-49	88.2
AWA65483.1\|1334015_1334273_+	lF-82	NA	NA	NA	NA
AWA61927.1\|1334350_1334935_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	1.3e-90	89.1
AWA61928.1\|1334931_1336407_+\|terminase	terminase	Q858H3	Salmonella_phage	1.9e-279	92.5
AWA61929.1\|1336418_1336691_-	hypothetical protein	NA	NA	NA	NA
AWA61930.1\|1336776_1337142_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	5.1e-61	95.9
AWA61931.1\|1337633_1337822_+	hypothetical protein	NA	NA	NA	NA
AWA61932.1\|1337841_1338048_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
AWA61933.1\|1338062_1339745_+\|tail	phage tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	2.5e-264	84.4
AWA61934.1\|1339741_1340038_+	hypothetical protein	T1SBI9	Salmonella_phage	9.6e-34	70.4
AWA61935.1\|1340040_1340730_+	peptidase	G9L6C4	Escherichia_phage	2.9e-65	69.6
AWA61936.1\|1340744_1341731_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	3.3e-179	93.6
AWA61937.1\|1341784_1342222_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
1341946:1341961	attR	NA	NA	NA	NA
AWA61938.1\|1342232_1342574_+	hypothetical protein	G9L6C7	Escherichia_phage	1.1e-36	71.9
AWA61939.1\|1342624_1342948_+	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
AWA61940.1\|1342947_1343553_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	3.3e-89	79.0
AWA61941.1\|1343552_1346030_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.2
AWA61942.1\|1346029_1346494_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
AWA61943.1\|1346493_1347033_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	3.0e-70	79.4
AWA61944.1\|1347043_1349857_+	hypothetical protein	T1SBJ1	Salmonella_phage	0.0e+00	93.3
AWA61945.1\|1349853_1351659_+	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	1.7e-237	73.3
AWA61946.1\|1351662_1354137_+	hypothetical protein	A0A0F6TK45	Escherichia_coli_O157_typing_phage	0.0e+00	87.0
AWA61947.1\|1354335_1354632_+	hypothetical protein	A0A2R9YJP3	Escherichia_phage	4.4e-47	94.8
AWA61948.1\|1354666_1354819_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	3.3e-14	83.7
AWA65484.1\|1354917_1355178_-	hypothetical protein	A0A0F6R8M4	Escherichia_coli_O157_typing_phage	2.1e-24	64.0
AWA61949.1\|1355277_1356498_+\|transposase	ISL3-like element ISKox3 family transposase	NA	NA	NA	NA
AWA61950.1\|1359046_1359295_+	hypothetical protein	NA	NA	NA	NA
AWA61951.1\|1359630_1360035_+	hypothetical protein	T1SA79	Salmonella_phage	9.3e-56	84.1
AWA61952.1\|1360021_1360327_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	7.8e-39	80.4

DBSCAN-SWA_3

1702833 : 1709740

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA65501.1\|1702833_1703697_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.8e-09	27.0
AWA62241.1\|1703707_1704481_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
AWA65502.1\|1704723_1705617_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
AWA62242.1\|1705862_1707224_-	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
AWA62243.1\|1707542_1708265_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
AWA62244.1\|1708261_1709740_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	5.0e-30	28.3

DBSCAN-SWA_4

1751304 : 1761206

Escherichia_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA62270.1\|1751304_1752711_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.6e-38	28.9
AWA62271.1\|1752952_1754017_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	6.4e-104	54.1
AWA62272.1\|1754043_1754913_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	7.5e-111	67.0
AWA62273.1\|1754944_1755835_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	34.2
AWA62274.1\|1755849_1756404_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
AWA62275.1\|1756584_1757751_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
AWA62276.1\|1758695_1759700_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.0e-31	29.5
AWA62277.1\|1760225_1761206_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4

DBSCAN-SWA_5

1866442 : 1950907

100

Enterobacteria_phage(21.05%)

capsid,head,holin,tail,tRNA,portal,terminase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA62377.1\|1866442_1868176_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	1.4e-87	33.8
AWA62378.1\|1868411_1868981_+	VOC family protein	NA	NA	NA	NA
AWA62379.1\|1869057_1869801_+	copper homeostasis protein CutC	NA	NA	NA	NA
AWA62380.1\|1869882_1870887_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
AWA62381.1\|1870883_1871627_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.1e-25	30.0
AWA62382.1\|1871666_1872062_-	hypothetical protein	NA	NA	NA	NA
AWA62383.1\|1872114_1872894_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	1.1e-60	82.7
AWA62384.1\|1872890_1874150_-	DUF3596 domain-containing protein	A0A286S1S8	Klebsiella_phage	2.1e-223	90.2
AWA62385.1\|1874192_1874438_-	excisionase	A0A286S2A4	Klebsiella_phage	1.4e-35	92.1
AWA62386.1\|1874571_1874865_-	hypothetical protein	A0A1U8QJU8	Salmonella_virus	9.8e-23	58.3
AWA62387.1\|1874861_1875509_-	hypothetical protein	R9VWB9	Serratia_phage	5.1e-56	52.6
AWA62388.1\|1875501_1875846_-	hypothetical protein	NA	NA	NA	NA
AWA62389.1\|1875842_1876067_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	1.5e-18	60.8
AWA62390.1\|1876063_1876291_-	hypothetical protein	A0A291LBA3	Klebsiella_phage	8.1e-09	46.8
AWA62391.1\|1876592_1876886_-	host cell division inhibitory peptide Kil	NA	NA	NA	NA
AWA62392.1\|1877076_1877265_-	hypothetical protein	NA	NA	NA	NA
AWA62393.1\|1877938_1878571_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	6.4e-35	36.9
AWA62394.1\|1878669_1878891_+	helix-turn-helix domain-containing protein	Q716D6	Shigella_phage	8.2e-14	55.7
AWA62395.1\|1878930_1879251_+	hypothetical protein	A0A0M4RU01	Salmonella_phage	5.0e-36	68.9
AWA62396.1\|1879446_1879701_+	hypothetical protein	NA	NA	NA	NA
AWA62397.1\|1879697_1880747_+	hypothetical protein	K7PLZ7	Enterobacterial_phage	2.7e-30	51.5
AWA62398.1\|1880773_1881169_+	hypothetical protein	NA	NA	NA	NA
AWA62399.1\|1881168_1881390_+	hypothetical protein	NA	NA	NA	NA
AWA62400.1\|1881382_1882174_+	hypothetical protein	A4JX52	Burkholderia_virus	5.3e-63	51.7
AWA62401.1\|1882166_1882799_+	ead/Ea22-like family protein	K7PJQ4	Enterobacteria_phage	9.0e-05	40.2
AWA62402.1\|1882962_1883562_+	DUF551 domain-containing protein	G9L6B4	Escherichia_phage	2.7e-19	59.5
AWA65511.1\|1883561_1883750_+	hypothetical protein	R9TNE4	Aeromonas_phage	4.7e-18	72.9
AWA62403.1\|1883822_1884092_+	hypothetical protein	H6WRY4	Salmonella_phage	3.5e-35	80.7
AWA62404.1\|1884333_1884642_+	DUF968 domain-containing protein	Q6V7S4	Burkholderia_virus	1.6e-23	57.6
AWA62405.1\|1884634_1885279_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	3.6e-102	81.0
AWA62406.1\|1885275_1885875_+	hypothetical protein	H9C175	Pectobacterium_phage	1.1e-65	58.4
AWA62407.1\|1886577_1886847_+\|holin	holin	K7P6H9	Enterobacteria_phage	2.8e-32	78.3
AWA65512.1\|1886824_1887322_+	lysozyme	A0A1V0E5Q7	Salmonella_phage	9.6e-79	83.6
AWA62408.1\|1887318_1887708_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	1.5e-23	50.0
AWA62409.1\|1887700_1887850_+	Rz1 lytic protein	S5FXQ4	Shigella_phage	1.1e-09	71.4
AWA62410.1\|1887973_1888294_+	hypothetical protein	NA	NA	NA	NA
AWA62411.1\|1888296_1888647_+	HNH endonuclease	K7PHK9	Enterobacteria_phage	1.2e-51	80.2
AWA62412.1\|1888804_1889302_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	1.1e-61	72.1
AWA62413.1\|1889301_1891059_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	91.1
AWA62414.1\|1891069_1891255_+	hypothetical protein	Q8HAD5	Salmonella_phage	6.2e-15	61.7
AWA62415.1\|1891254_1892484_+\|portal	phage portal protein	U5P411	Shigella_phage	8.2e-204	82.4
AWA62416.1\|1892470_1893124_+\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	7.1e-106	87.9
AWA62417.1\|1893138_1894347_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	2.2e-193	84.8
AWA62418.1\|1894385_1894589_+	hypothetical protein	M1FN89	Enterobacteria_phage	2.3e-07	42.4
AWA62419.1\|1894585_1894906_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	1.7e-15	39.8
AWA62420.1\|1894914_1895253_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.4e-41	74.1
AWA62421.1\|1895249_1895699_+	HK97 gp10 family phage protein	Q9MCS9	Enterobacteria_phage	9.7e-62	81.9
AWA62422.1\|1895695_1896043_+	DUF3168 domain-containing protein	K7PKL6	Enterobacterial_phage	8.0e-32	62.8
AWA62423.1\|1896099_1896804_+\|tail	phage tail protein	K7PHL2	Enterobacterial_phage	5.5e-80	66.9
AWA62424.1\|1896834_1897239_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	8.5e-33	57.7
AWA62425.1\|1897241_1897547_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	4.7e-28	64.6
AWA62426.1\|1897620_1897854_+	hypothetical protein	K7PH16	Enterobacteria_phage	1.9e-08	47.2
AWA62427.1\|1897914_1901301_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	1.5e-303	57.9
AWA62428.1\|1901321_1901795_+	hypothetical protein	A0A286S298	Klebsiella_phage	1.6e-54	61.4
AWA62429.1\|1901781_1902267_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	3.0e-53	66.2
AWA62430.1\|1902276_1902657_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	2.1e-57	80.2
AWA62431.1\|1902653_1905728_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	70.6
AYE54689.1\|1907872_1908124_+	hypothetical protein	NA	NA	NA	NA
AWA62432.1\|1908385_1909927_+	hypothetical protein	NA	NA	NA	NA
AWA62433.1\|1909934_1911158_-	hypothetical protein	NA	NA	NA	NA
AWA62434.1\|1911535_1911775_+	hypothetical protein	K7P7N3	Enterobacteria_phage	3.0e-22	63.3
AWA62435.1\|1911999_1912566_-	hydrolase	NA	NA	NA	NA
AWA62436.1\|1912833_1914621_+\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.3e-11	27.2
AWA62437.1\|1914622_1915066_+	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA
AWA62438.1\|1915093_1915834_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AWA62439.1\|1915868_1916390_+	crossover junction endodeoxyribonuclease RuvC	G3MA90	Bacillus_virus	3.4e-10	35.1
AWA62440.1\|1916469_1917081_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AWA62441.1\|1917089_1918100_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.4e-07	24.3
AWA62442.1\|1918163_1918949_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA
AWA62443.1\|1918948_1919701_-	zinc ABC transporter ATP-binding protein ZnuC	W6JKT0	Anomala_cuprea_entomopoxvirus	6.7e-15	32.4
AWA62444.1\|1919779_1920724_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA
AWA62445.1\|1920739_1922059_+	murein DD-endopeptidase MepM	A8ATH6	Listeria_phage	5.3e-15	38.2
AWA62446.1\|1922176_1923151_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
AWA62447.1\|1923191_1924634_-	pyruvate kinase	NA	NA	NA	NA
AWA65513.1\|1924759_1925629_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AWA62448.1\|1925664_1925853_-	hypothetical protein	NA	NA	NA	NA
AWA62449.1\|1925824_1925974_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA
AWA62450.1\|1925984_1927460_+	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	3.2e-77	36.8
AWA62451.1\|1927682_1929494_+	phosphogluconate dehydratase	NA	NA	NA	NA
AWA62452.1\|1929532_1930174_+	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA
AWA62453.1\|1930231_1931410_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
AWA62454.1\|1931554_1931902_+	LexA family transcriptional regulator	NA	NA	NA	NA
AWA62455.1\|1932041_1932701_+	tellurite resistance TerB family protein	NA	NA	NA	NA
AWA62456.1\|1932821_1934882_+	oligopeptidase B	NA	NA	NA	NA
AWA62457.1\|1934885_1935545_-	exodeoxyribonuclease X	A0A0H4IT92	Pseudoalteromonas_phage	4.9e-14	31.2
AWA62458.1\|1935623_1935854_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	5.9e-15	57.4
AWA62459.1\|1935966_1936341_+	CopC domain-containing protein YobA	NA	NA	NA	NA
AWA62460.1\|1936344_1937214_+	hypothetical protein	NA	NA	NA	NA
AWA65514.1\|1937227_1937569_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AWA65515.2\|1938453_1939458_-	DUF535 domain-containing protein	NA	NA	NA	NA
AWA62461.1\|1939578_1940232_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	3.0e-56	50.2
AWA62462.1\|1940228_1940420_-	DUF1482 family protein	NA	NA	NA	NA
AWA62463.1\|1940517_1940757_-	DUF1480 family protein	NA	NA	NA	NA
AWA62464.1\|1940872_1942306_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AWA62465.1\|1942429_1945063_-	PqiB family protein	NA	NA	NA	NA
AWA62466.1\|1945031_1946315_-	paraquat-inducible protein A	NA	NA	NA	NA
AWA62467.1\|1946447_1946945_+	GAF domain-containing protein	NA	NA	NA	NA
AWA62468.1\|1947042_1947720_+	RNA chaperone ProQ	NA	NA	NA	NA
AWA62469.1\|1947739_1949788_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	3.0e-86	33.3
AWA62470.1\|1950022_1950907_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_6

2709447 : 2720335

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA63185.1\|2709447_2712555_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
AWA63186.1\|2713905_2714994_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	2.0e-209	99.4
AWA63187.1\|2715080_2715341_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
AWA63188.1\|2715638_2716499_+	class A extended-spectrum beta-lactamase SHV-5	A0A077SL40	Escherichia_phage	4.4e-156	99.7
AWA63189.1\|2716519_2717281_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AWA63190.1\|2717271_2717505_+	hypothetical protein	NA	NA	NA	NA
AWA63191.1\|2717542_2718445_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.4e-157	98.7
AWA63192.1\|2718456_2719722_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.5e-232	99.0
AWA63193.1\|2719714_2720335_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_7

3104732 : 3187445

Klebsiella_phage(43.48%)

capsid,head,holin,tail,integrase,tRNA,portal,terminase

attL 3131547:3131561|attR 3185256:3185270

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA63549.1\|3104732_3105233_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
AWA63550.1\|3105349_3105796_+	DUF441 domain-containing protein	NA	NA	NA	NA
AWA65565.1\|3105779_3106571_-	AraC family transcriptional regulator	NA	NA	NA	NA
AWA63551.1\|3106672_3107857_+	cyanate MFS transporter	NA	NA	NA	NA
AWA63552.1\|3107888_3108581_-	hypothetical protein	NA	NA	NA	NA
AWA63553.1\|3108726_3109236_+	DUF523 domain-containing protein	NA	NA	NA	NA
AWA63554.1\|3109222_3109579_+	DUF488 domain-containing protein	NA	NA	NA	NA
AWA63555.1\|3109568_3109808_-	DUF333 domain-containing protein	NA	NA	NA	NA
AWA63556.1\|3110109_3111123_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.7e-13	29.5
AWA63557.1\|3111180_3111282_+	hypothetical protein	NA	NA	NA	NA
AWA65566.1\|3111281_3111356_+	protein YoaJ	NA	NA	NA	NA
AWA63558.1\|3111473_3111599_+	hypothetical protein	NA	NA	NA	NA
AWA63559.1\|3111658_3111922_-	DUF2534 family protein	NA	NA	NA	NA
AWA63560.1\|3112052_3112691_-	leucine efflux protein	NA	NA	NA	NA
AWA63561.1\|3112780_3113695_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.5e-72	50.4
AWA63562.1\|3113910_3114102_+	hypothetical protein	NA	NA	NA	NA
AWA63563.1\|3114356_3115400_-	type II asparaginase	NA	NA	NA	NA
AWA63564.1\|3115702_3116911_+	HD domain-containing protein	NA	NA	NA	NA
AWA63565.1\|3116983_3118768_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.4e-17	38.5
AWA63566.1\|3118774_3119665_-	LysR family transcriptional regulator	NA	NA	NA	NA
AWA63567.1\|3119785_3121294_+	UbiD family decarboxylase	NA	NA	NA	NA
AWA63568.1\|3121604_3122291_-	EAL domain-containing protein	NA	NA	NA	NA
AWA63569.1\|3122688_3122868_-	hypothetical protein	NA	NA	NA	NA
AWA63570.1\|3122907_3123540_-	DNA-binding protein	NA	NA	NA	NA
AWA63571.1\|3124106_3124304_+	hypothetical protein	NA	NA	NA	NA
AWA63572.1\|3124419_3125430_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
AWA63573.1\|3125426_3126833_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
AWA63574.1\|3126888_3127776_-	manganese catalase family protein	NA	NA	NA	NA
AWA63575.1\|3127792_3128299_-	ferritin-like domain-containing protein	NA	NA	NA	NA
AWA63576.1\|3128325_3128820_-	ferritin-like domain-containing protein	NA	NA	NA	NA
AWA63577.1\|3128910_3129096_-	stress-induced acidophilic repeat motif-containing protein	NA	NA	NA	NA
AWA63578.1\|3129717_3130911_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
AWA63579.1\|3131023_3131251_+	DUF1272 domain-containing protein	NA	NA	NA	NA
AWA63580.1\|3131271_3131457_-	hypothetical protein	NA	NA	NA	NA
3131547:3131561	attL	NA	NA	NA	NA
AWA63581.1\|3131700_3132024_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AWA63582.1\|3132016_3132409_+	amino acid-binding protein	NA	NA	NA	NA
AWA63583.1\|3132405_3133119_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AWA63584.1\|3133391_3133544_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
AWA63585.1\|3133697_3135194_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	2.5e-138	69.6
AWA63586.1\|3135255_3146472_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	50.5
AWA63587.1\|3146534_3147128_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	1.8e-79	77.2
AWA63588.1\|3147154_3147577_-	hypothetical protein	J9Q806	Salmonella_phage	2.9e-28	49.3
AWA63589.1\|3147618_3148329_-	peptidase P60	Q6UAW4	Klebsiella_phage	3.8e-137	91.1
AWA63590.1\|3148330_3149086_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	1.4e-124	80.5
AWA63591.1\|3149082_3149421_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	2.4e-57	88.4
AWA63592.1\|3149420_3152777_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.8
AWA63593.1\|3152776_3152989_-	hypothetical protein	Q6UAW9	Klebsiella_phage	3.7e-32	88.9
AWA63594.1\|3153009_3153375_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
AWA63595.1\|3153432_3153894_-\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
AWA63596.1\|3153925_3154327_-	hypothetical protein	Q6UAX1	Klebsiella_phage	1.1e-61	93.2
AWA63597.1\|3154323_3154713_-	hypothetical protein	Q6UAX2	Klebsiella_phage	4.0e-56	84.5
AWA63598.1\|3154693_3155032_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
AWA63599.1\|3155028_3155346_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
AWA63600.1\|3155326_3155587_-	hypothetical protein	Q6UAX5	Klebsiella_phage	1.5e-22	63.9
AWA63601.1\|3155645_3156932_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	5.7e-216	89.3
AWA63602.1\|3157009_3157930_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	1.6e-148	88.2
AWA63603.1\|3157966_3159226_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	2.3e-222	89.8
AWA63604.1\|3159225_3159405_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
AWA63605.1\|3159398_3161120_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.9e-190	57.4
AWA63606.1\|3161119_3161554_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
AWA63607.1\|3161803_3162235_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.3
AWA63608.1\|3162231_3162549_-	hypothetical protein	NA	NA	NA	NA
AWA63609.1\|3162500_3162863_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	3.4e-57	81.7
AWA63610.1\|3163016_3163238_-	DNA gyrase subunit B	NA	NA	NA	NA
AWA63611.1\|3163344_3163533_-	hypothetical protein	NA	NA	NA	NA
AWA63612.1\|3164612_3164963_-	hypothetical protein	R9TPM9	Aeromonas_phage	1.8e-10	39.8
AWA63613.1\|3164959_3165457_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.9e-79	85.8
AWA63614.1\|3165456_3165672_-\|holin	holin	A5LH82	Enterobacteria_phage	7.9e-30	87.3
AWA63615.1\|3167095_3167698_-	hypothetical protein	H9C175	Pectobacterium_phage	2.4e-76	68.1
AWA63616.1\|3167714_3168746_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	6.2e-96	49.6
AWA63617.1\|3168745_3168949_-	hypothetical protein	NA	NA	NA	NA
AWA63618.1\|3168945_3169338_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	1.0e-11	36.6
AWA63619.1\|3169378_3169669_-	hypothetical protein	H6WRY6	Salmonella_phage	1.4e-16	56.9
AWA63620.1\|3169680_3169914_-	DinI family protein	K7PM44	Enterobacteria_phage	1.3e-25	72.4
AWA63621.1\|3170539_3171517_+	thymidylate synthase	A0A1G5SB41	Enterococcus_phage	1.1e-22	31.5
AWA63622.1\|3171516_3172461_+	hypothetical protein	NA	NA	NA	NA
AWA63623.1\|3172463_3173546_-	ImmA/IrrE family metallo-endopeptidase	A0A075BTZ7	Microcystis_phage	2.1e-09	38.6
AWA63624.1\|3173542_3173869_-	killer suppression protein HigA	NA	NA	NA	NA
AWA63625.1\|3174014_3174281_+	hypothetical protein	A0A2C9CX56	Yersinia_phage	8.6e-26	70.7
AWA63626.1\|3174281_3174533_-	hypothetical protein	NA	NA	NA	NA
AWA63627.1\|3175228_3175669_-	PerC family transcriptional regulator	NA	NA	NA	NA
AWA65567.1\|3175682_3176147_-	replication protein	A0A0U2JGJ0	Escherichia_phage	1.7e-61	68.9
AWA63628.1\|3176139_3177123_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	2.4e-44	55.8
AWA63629.1\|3177174_3177729_-	hypothetical protein	NA	NA	NA	NA
AWA63630.1\|3177731_3177947_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.0e-17	57.5
AWA63631.1\|3178048_3178438_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	6.7e-35	60.2
AWA63632.1\|3179052_3179271_+	hypothetical protein	NA	NA	NA	NA
AWA63633.1\|3179280_3179475_+	DUF1482 family protein	NA	NA	NA	NA
AWA63634.1\|3179517_3179862_+	transcriptional regulator	NA	NA	NA	NA
AWA63635.1\|3180003_3182142_+	exonuclease	S4TNL0	Salmonella_phage	1.9e-99	42.9
AWA63636.1\|3182194_3182440_+	excisionase	NA	NA	NA	NA
AWA63637.1\|3182420_3183548_+\|integrase	integrase	O21925	Phage_21	3.3e-119	58.4
AWA63638.1\|3183665_3184916_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
AWA63639.1\|3185156_3185807_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3185256:3185270	attR	NA	NA	NA	NA
AWA63640.1\|3185823_3186282_+	NUDIX hydrolase	NA	NA	NA	NA
AWA65568.1\|3186338_3187445_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_8

3424427 : 3433891

Brazilian_cedratvirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA63847.1\|3424427_3426149_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
AWA63848.1\|3426193_3426895_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AWA63849.1\|3427248_3427467_+	translation initiation factor IF-1	NA	NA	NA	NA
AWA63850.1\|3427587_3429867_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
AWA63851.1\|3429897_3430215_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AWA63852.1\|3430540_3430762_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AWA63853.1\|3430716_3430899_-	hypothetical protein	NA	NA	NA	NA
AWA63854.1\|3430838_3432779_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	7.2e-37	40.5
AWA63855.1\|3432775_3433891_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

DBSCAN-SWA_9

4610765 : 4622797

Enterobacteria_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AWA64876.1\|4610765_4612031_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	5.8e-80	40.3
AWA64877.1\|4612773_4615107_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.7
AWA64878.1\|4615120_4615441_-	hypothetical protein	NA	NA	NA	NA
AWA64879.1\|4615437_4615665_-	hypothetical protein	NA	NA	NA	NA
AWA64880.1\|4615661_4616213_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.9e-31	66.7
AWA64881.1\|4617036_4617774_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	1.9e-70	60.1
AWA64882.1\|4617770_4618016_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.0e-20	59.3
AWA64883.1\|4618033_4618600_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.9e-60	64.9
AWA64884.1\|4618665_4618881_+	hypothetical protein	NA	NA	NA	NA
AWA64885.1\|4618996_4621405_-	hypothetical protein	NA	NA	NA	NA
AWA64886.1\|4621525_4622797_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.1e-73	40.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028784

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP028786

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP028787

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection