CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP024139	Escherichia coli strain 14EC020 plasmid p14EC020a, complete sequence	0 crisprs	NA	0	0
CP024138	Escherichia coli strain 14EC020 chromosome, complete genome	4 crisprs	csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,RT,WYL	13	8
CP024140	Escherichia coli strain 14EC020 plasmid p14EC020b, complete sequence	0 crisprs	csa3	0	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP024138_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024138_1

1112469-1112926

Unclear

I-E

Consensus_repeat	Method
GAGAGTTCCCCACGTCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCACGTCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCNCGNCAGCGGGGATAAACCG	CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

7 spacers

The CRISPR arrays of CP024138_1

>merge|CP024138|1|1112469-1112926|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GAGAGTTCCCCACGTCAGCGGGGATAAACCGGCTCCGCCGGTTTGATCTCCGGTTTGCGCTGTGAGTTCCCCACGTCAGCGGGGATAAACCGGCAATTAATTTAGTTCCAGATGCTGCGAAAGAGAGTTCCCCACGTCAGCGGGGATAAACCGTTGGTCACTCGTCAAAAGTCGAGACGGTCGAAGAGTTCCCCACGTCAGCGGGGATAAACCGAATGATTGATATAAATCTGTGTACGGTGTCCGGAGTTCCCCGCGCCAGCGGGGATAAACCGCTAGGATAAATTAAAAGACAAAATTGCAGCAAGAGTTCCCCGCGGCAGCGGGGATAAACCGGAGCGACCAGTATCAAGATCGACAGGTTTTGCGAGTTCCCCGCGCCAGCGGGGATAAACCGATCGATATGTACGTTAGCGAGGGGATCACGCAGAGTTCCCCGCACCAGCGGGGATAAACCA

>CP024138|1|1|1112469-1112682|PILER-CR
GAGAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCT
GTGAGTTCCCCACGTCAGCGGGGATAAACCG	GCAATTAATTTAGTTCCAGATGCTGCGAAA
GAGAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCG
AAGAGTTCCCCACGTCAGCGGGGATAAACCGAATGATTGATATAAATCTGTGTACGGTGTCCGGAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA


>CP024138|1|1|1112471-1112926|CRISPRCasFinder
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCAATTAATTTAGTTCCAGATGCTGCGAAAGA
GAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA
GAGTTCCCCACGTCAGCGGGGATAAACCG	AATGATTGATATAAATCTGTGTACGGTGTCCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA
GAGTTCCCCGCACCAGCGGGGATAAACCA

>CP024138|1|1|1112471-1112926|CRT
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCAATTAATTTAGTTCCAGATGCTGCGAAAGA
GAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA
GAGTTCCCCACGTCAGCGGGGATAAACCG	AATGATTGATATAAATCTGTGTACGGTGTCCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA
GAGTTCCCCGCACCAGCGGGGATAAACCA

>CP024138|1|2|1112715-1112926|PILER-CR
	GCTCCGCCGGTTTGATCTCCGGTTTGCGCT
GTGAGTTCCCCACGTCAGCGGGGATAAACCG	GCAATTAATTTAGTTCCAGATGCTGCGAAA
GAGAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCG
AAGAGTTCCCCACGTCAGCGGGGATAAACCGAATGATTGATATAAATCTGTGTACGGTGTCCGGAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA
GAGTTCCCCGCACCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
CP024138.1\|AUK05376.1\|1121158_1122019_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
CP024138.1\|AUK05367.1\|1107209_1108847_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP024138.1\|AUK05364.1\|1102511_1103813_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP024138.1\|AUK05370.1\|1113563_1115042_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
CP024138.1\|AUK05366.1\|1106190_1106982_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP024138.1\|AUK05360.1\|1095412_1096765_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
CP024138.1\|AUK05375.1\|1120382_1121162_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
CP024138.1\|AUK05363.1\|1099698_1102455_-\|signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|236848
CP024138.1\|AUK05371.1\|1115068_1116346_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
CP024138.1\|AUK05373.1\|1117519_1118974_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
CP024138.1\|AUK05372.1\|1116664_1117450_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|187605
CP024138.1\|AUK05378.1\|1122757_1123018_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
CP024138.1\|AUK05377.1\|1122165_1122741_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
CP024138.1\|AUK05379.1\|1123008_1124280_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
CP024138.1\|AUK05374.1\|1119067_1120405_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
CP024138.1\|AUK05369.1\|1111459_1112131_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP024138.1\|AUK05362.1\|1098127_1099468_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
CP024138.1\|AUK05361.1\|1096766_1098107_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
CP024138.1\|AUK05365.1\|1103860_1106095_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP024138.1\|AUK05368.1\|1108933_1110232_+\|enolase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
CP024138.1\|AUK05376.1\|1121158_1122019_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	3.86737e-87
CP024138.1\|AUK05367.1\|1107209_1108847_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP024138.1\|AUK05364.1\|1102511_1103813_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP024138.1\|AUK05370.1\|1113563_1115042_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.96639e-109
CP024138.1\|AUK05366.1\|1106190_1106982_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	6.42418e-159
CP024138.1\|AUK05360.1\|1095412_1096765_+\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.41821e-161
CP024138.1\|AUK05375.1\|1120382_1121162_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.49488e-64
CP024138.1\|AUK05363.1\|1099698_1102455_-\|signal-transduction-histidine-kinase	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP024138.1\|AUK05371.1\|1115068_1116346_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.00463e-29
CP024138.1\|AUK05373.1\|1117519_1118974_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.16286e-81
CP024138.1\|AUK05372.1\|1116664_1117450_+\|oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.9939e-139
CP024138.1\|AUK05378.1\|1122757_1123018_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.39108e-42
CP024138.1\|AUK05377.1\|1122165_1122741_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.96043e-88
CP024138.1\|AUK05379.1\|1123008_1124280_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.50386e-125
CP024138.1\|AUK05374.1\|1119067_1120405_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.78259e-51
CP024138.1\|AUK05369.1\|1111459_1112131_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
CP024138.1\|AUK05362.1\|1098127_1099468_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
CP024138.1\|AUK05361.1\|1096766_1098107_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
CP024138.1\|AUK05365.1\|1103860_1106095_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP024138.1\|AUK05368.1\|1108933_1110232_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>CP024138.1|AUK05369.1|1111459_1112131_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP024138.1|AUK05368.1|1108933_1110232_+|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP024138.1|AUK05367.1|1107209_1108847_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP024138.1|AUK05366.1|1106190_1106982_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADGSAGNSREVLARWEQIKTEERAQKAQHSALDDIPSSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQVVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP024138.1|AUK05365.1|1103860_1106095_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>CP024138.1|AUK05364.1|1102511_1103813_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>CP024138.1|AUK05363.1|1099698_1102455_-|signal-transduction-histidine-kinase
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>CP024138.1|AUK05362.1|1098127_1099468_+|glucarate-dehydratase
MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDKCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPLEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>CP024138.1|AUK05361.1|1096766_1098107_+|glucarate-dehydratase
MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGHTGIGEAPGGEVIYQTLVKAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALLDLLGQALNVPVCELLGPGKQRDAITVLGYLFYIGDRTKTDLPYLENTSGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVPDAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH
>CP024138.1|AUK05360.1|1095412_1096765_+|MFS-transporter
MSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSMFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSIFNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNQKELEYIAAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKTPIVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIELKPVAGQ
>CP024138.1|AUK05370.1|1113563_1115042_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFASHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDTAVMEKFNIPRQMLFDVQMPGTVLGHITRQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>CP024138.1|AUK05371.1|1115068_1116346_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSTNNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIIFTFLLFQKIRTADSAPAMASSK
>CP024138.1|AUK05372.1|1116664_1117450_+|oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>CP024138.1|AUK05373.1|1117519_1118974_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYVLEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>CP024138.1|AUK05374.1|1119067_1120405_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFIGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGVLLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>CP024138.1|AUK05375.1|1120382_1121162_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVVLETAADLRFASEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAELPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQNYLRQRMQP
>CP024138.1|AUK05376.1|1121158_1122019_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNITIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSMRKSHWGNALTATLQTEKRPLCLSLARQAGALKNATLPSGMQQLNIVPGAPPDWLISVENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLVEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKAVLEALVTTIHADCQ
>CP024138.1|AUK05377.1|1122165_1122741_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISQIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>CP024138.1|AUK05378.1|1122757_1123018_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>CP024138.1|AUK05379.1|1123008_1124280_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLVERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALRSCVNTGISVRGMDMALTGTQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: CP024138_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024138_2

1138628-1139327

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

11 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP024138_2

>merge|CP024138|2|1138628-1139327|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCATTGAAAACATTGCCTTTATTTTATTTTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCCGCCGCTGGGCACTTCCTTCCCGTGAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCTGATAGCGTCCAGTTGAATGCGCGCCCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGGCACGGGCAATATCAGACTCGGTCAAAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCGGTTGTTTTCATATTACCGGCCTGCCACTGTGTTCCCCGCGCCAGCGGGGATAAACCGACAATATCCCGGACCGGGCGCTGATTTAGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGGATGAGCAAATAACGTCGTTTCCTAGAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCCGTGCCAGTGATCCTCATACGGCCTGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTAAGAACGGCGTAAACGACGGCAGCATGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGATGATTCAGAGCAGACATTAGCCCGCGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTAAAAACACGGTCTGAACCGACATTCATGTGTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP024138|2|3|1138628-1139327|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGAAAACATTGCCTTTATTTTATTTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGCACGGGCAATATCAGACTCGGTCAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGGTTGTTTTCATATTACCGGCCTGCCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATATCCCGGACCGGGCGCTGATTTAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGATGAGCAAATAACGTCGTTTCCTAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGTGCCAGTGATCCTCATACGGCCTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAAGAACGGCGTAAACGACGGCAGCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGATTCAGAGCAGACATTAGCCCGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP024138|2|2|1138628-1139327|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGAAAACATTGCCTTTATTTTATTTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGCACGGGCAATATCAGACTCGGTCAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGGTTGTTTTCATATTACCGGCCTGCCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATATCCCGGACCGGGCGCTGATTTAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGATGAGCAAATAACGTCGTTTCCTAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGTGCCAGTGATCCTCATACGGCCTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAAGAACGGCGTAAACGACGGCAGCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGATTCAGAGCAGACATTAGCCCGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP024138|2|2|1138628-1139327|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGAAAACATTGCCTTTATTTTATTTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGCACGGGCAATATCAGACTCGGTCAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGGTTGTTTTCATATTACCGGCCTGCCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATATCCCGGACCGGGCGCTGATTTAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGATGAGCAAATAACGTCGTTTCCTAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGTGCCAGTGATCCTCATACGGCCTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAAGAACGGCGTAAACGACGGCAGCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGATTCAGAGCAGACATTAGCCCGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP024138.1\|AUK05391.1\|1138237_1138531_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP024138.1\|AUK05395.1\|1143034_1143640_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP024138.1\|AUK05398.1\|1144536_1145247_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP024138.1\|AUK05388.1\|1135942_1136689_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP024138.1\|AUK05397.1\|1144206_1144518_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP024138.1\|AUK05386.1\|1134325_1134862_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP024138.1\|AUK05392.1\|1139408_1140446_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP024138.1\|AUK08899.1\|1132766_1134329_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP024138.1\|AUK05400.1\|1145722_1146772_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP024138.1\|AUK05396.1\|1143689_1144013_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP024138.1\|AUK05399.1\|1145246_1145726_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP024138.1\|AUK05383.1\|1128623_1129358_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP024138.1\|AUK05384.1\|1129621_1129774_+\|Hok/Gef-family-protein	unknown	unknown	gnl\|CDD\|366840
CP024138.1\|AUK05393.1\|1140697_1141606_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP024138.1\|AUK05385.1\|1130011_1132669_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP024138.1\|AUK05390.1\|1137317_1138241_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP024138.1\|AUK05387.1\|1134876_1135932_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
CP024138.1\|AUK05389.1\|1136670_1137321_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP024138.1\|AUK05394.1\|1141607_1143035_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP024138.1\|AUK05401.1\|1146752_1147514_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732

Protein	Function_ID	Function_description	E-value
CP024138.1\|AUK05391.1\|1138237_1138531_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.0872e-65
CP024138.1\|AUK05395.1\|1143034_1143640_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.12214e-148
CP024138.1\|AUK05398.1\|1144536_1145247_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.47016e-121
CP024138.1\|AUK05388.1\|1135942_1136689_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.00414e-48
CP024138.1\|AUK05397.1\|1144206_1144518_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	2.23098e-61
CP024138.1\|AUK05386.1\|1134325_1134862_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.62446e-29
CP024138.1\|AUK05392.1\|1139408_1140446_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP024138.1\|AUK08899.1\|1132766_1134329_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP024138.1\|AUK05400.1\|1145722_1146772_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP024138.1\|AUK05396.1\|1143689_1144013_+\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP024138.1\|AUK05399.1\|1145246_1145726_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	5.30213e-104
CP024138.1\|AUK05383.1\|1128623_1129358_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.40583e-137
CP024138.1\|AUK05384.1\|1129621_1129774_+\|Hok/Gef-family-protein	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
CP024138.1\|AUK05393.1\|1140697_1141606_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP024138.1\|AUK05385.1\|1130011_1132669_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	8.16333e-180
CP024138.1\|AUK05390.1\|1137317_1138241_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.11358e-157
CP024138.1\|AUK05387.1\|1134876_1135932_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	3.45361e-154
CP024138.1\|AUK05389.1\|1136670_1137321_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.43159e-91
CP024138.1\|AUK05394.1\|1141607_1143035_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP024138.1\|AUK05401.1\|1146752_1147514_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150

>CP024138.1|AUK05391.1|1138237_1138531_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>CP024138.1|AUK05390.1|1137317_1138241_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>CP024138.1|AUK05389.1|1136670_1137321_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDIFTIECRPFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQVEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>CP024138.1|AUK05388.1|1135942_1136689_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>CP024138.1|AUK05387.1|1134876_1135932_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTLQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>CP024138.1|AUK05386.1|1134325_1134862_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIESQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDELLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>CP024138.1|AUK08899.1|1132766_1134329_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVHLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALLPLEHAFQFGPDSPSFMQDFEALTGDKVPVASLLPEIPGVQTTKFNKDHFIKRGVTEHLCPQCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKMWLNVMPQDEADLPLPKKFDGLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGVRGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>CP024138.1|AUK05385.1|1130011_1132669_+|CRISPR-associated-helicase/endonuclease-Cas3
MTFFYFWGKTRRGEKDGGEDYHLLCWHSLDVAAMGYLMVKSNCFGLAGYFRQLGFADTELAAQFFAWLLCWHDIGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLKRVMEMWMPMTTGHHGRPPERMDELDNFLPEDKGAARDFLLAIKVLFPLIEIPTFWDDDEGVELIKQLSWYISATVVLADWTGSSTRYFPRVAQAMDIEDYWQKTLVQAQNALTVFPPKAESAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGIEGQQEAPLLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIQVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDCSQRAGKVLICTQVLEQSVDCDLDEMISDLAPVDLLIQRAGRLQRHIRDINGLLKRDGKDERSPPEFLILAPVWDDSPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVAMPEGFARSEQEQVGKYYCDRAMAKKFVLNFKPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCIEQRQDPEMANVILVTDDESCGYSAMEGLTGKVG
>CP024138.1|AUK05384.1|1129621_1129774_+|Hok/Gef-family-protein
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>CP024138.1|AUK05383.1|1128623_1129358_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP024138.1|AUK05392.1|1139408_1140446_-|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>CP024138.1|AUK05393.1|1140697_1141606_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP024138.1|AUK05394.1|1141607_1143035_+|sulfate-adenylyltransferase
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFSGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>CP024138.1|AUK05395.1|1143034_1143640_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTPQQREQHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP024138.1|AUK05396.1|1143689_1144013_+|hypothetical-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP024138.1|AUK05397.1|1144206_1144518_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNNDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP024138.1|AUK05398.1|1144536_1145247_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSRFAQLPLANHPQITVVDGGEERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAETGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP024138.1|AUK05399.1|1145246_1145726_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYALGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP024138.1|AUK05400.1|1145722_1146772_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVMEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAEETELQTLLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP024138.1|AUK05401.1|1146752_1147514_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: CP024138_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024138_3

2332188-2332311

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024138_3

>merge|CP024138|3|2332188-2332311|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP024138|3|3|2332188-2332311|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP024138.1\|AUK06494.1\|2327739_2328408_+\|thiosulfate-reductase-electron-transport-protein-PhsB	unknown	unknown	gnl\|CDD\|274451
CP024138.1\|AUK06499.1\|2332625_2333882_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
CP024138.1\|AUK06495.1\|2328404_2329190_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
CP024138.1\|AUK06489.1\|2321641_2323054_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699
CP024138.1\|AUK06508.1\|2341462_2342632_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
CP024138.1\|AUK06491.1\|2324275_2324902_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182135
CP024138.1\|AUK06506.1\|2340896_2341121_-\|hypothetical-protein	unknown	unknown	unknown
CP024138.1\|AUK06498.1\|2331747_2332053_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
CP024138.1\|AUK06497.1\|2330011_2331622_-\|FAD/NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|182134
CP024138.1\|AUK06501.1\|2335510_2336152_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
CP024138.1\|AUK06492.1\|2324922_2327025_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
CP024138.1\|AUK06503.1\|2337630_2338842_-\|Bcr/CflA-family-drug-resistance-efflux-transporter	unknown	unknown	gnl\|CDD\|182924
CP024138.1\|AUK06507.1\|2341207_2341297_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
CP024138.1\|AUK06502.1\|2336191_2337340_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
CP024138.1\|AUK06500.1\|2333922_2335296_-\|multidrug-resistance-protein-MdtK	unknown	unknown	gnl\|CDD\|234981
CP024138.1\|AUK06490.1\|2323610_2323820_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
CP024138.1\|AUK06493.1\|2327028_2327676_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182160
CP024138.1\|AUK06496.1\|2329193_2330006_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
CP024138.1\|AUK06505.1\|2339883_2340909_-\|PurR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236739
CP024138.1\|AUK06504.1\|2338954_2339887_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948

Protein	Function_ID	Function_description	E-value
CP024138.1\|AUK06494.1\|2327739_2328408_+\|thiosulfate-reductase-electron-transport-protein-PhsB	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.72056e-77
CP024138.1\|AUK06499.1\|2332625_2333882_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
CP024138.1\|AUK06495.1\|2328404_2329190_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	1.75608e-161
CP024138.1\|AUK06489.1\|2321641_2323054_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
CP024138.1\|AUK06508.1\|2341462_2342632_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	9.34269e-98
CP024138.1\|AUK06491.1\|2324275_2324902_+\|hypothetical-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	7.7474e-138
CP024138.1\|AUK06498.1\|2331747_2332053_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	5.59739e-64
CP024138.1\|AUK06497.1\|2330011_2331622_-\|FAD/NAD(P)-binding-domain-containing-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
CP024138.1\|AUK06501.1\|2335510_2336152_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	1.68379e-123
CP024138.1\|AUK06492.1\|2324922_2327025_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
CP024138.1\|AUK06503.1\|2337630_2338842_-\|Bcr/CflA-family-drug-resistance-efflux-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
CP024138.1\|AUK06502.1\|2336191_2337340_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
CP024138.1\|AUK06500.1\|2333922_2335296_-\|multidrug-resistance-protein-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
CP024138.1\|AUK06490.1\|2323610_2323820_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
CP024138.1\|AUK06493.1\|2327028_2327676_+\|hypothetical-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.65892e-122
CP024138.1\|AUK06496.1\|2329193_2330006_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	1.03394e-173
CP024138.1\|AUK06505.1\|2339883_2340909_-\|PurR-family-transcriptional-regulator	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
CP024138.1\|AUK06504.1\|2338954_2339887_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0

>CP024138.1|AUK06498.1|2331747_2332053_-|monooxygenase
MATLLQLHFAFNGPFGDAMVEQLEPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>CP024138.1|AUK06497.1|2330011_2331622_-|FAD/NAD(P)-binding-domain-containing-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEVGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEEIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAIAQAVVKPASRARRRLSFNQM
>CP024138.1|AUK06496.1|2329193_2330006_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERAFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGEDSTIVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>CP024138.1|AUK06495.1|2328404_2329190_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPLFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSANDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATTVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>CP024138.1|AUK06494.1|2327739_2328408_+|thiosulfate-reductase-electron-transport-protein-PhsB
MSFTRRKFVLGMGTVIFFTGSASSLLANTMQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>CP024138.1|AUK06493.1|2327028_2327676_+|hypothetical-protein
MGEMNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDHADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDIAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>CP024138.1|AUK06492.1|2324922_2327025_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLNIKDDKVSLEKADLLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRKTLQRLGLEDIAADLAAHNLLPA
>CP024138.1|AUK06491.1|2324275_2324902_+|hypothetical-protein
MTPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNLNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>CP024138.1|AUK06490.1|2323610_2323820_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>CP024138.1|AUK06489.1|2321641_2323054_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>CP024138.1|AUK06499.1|2332625_2333882_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITDAATQVHLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>CP024138.1|AUK06500.1|2333922_2335296_-|multidrug-resistance-protein-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>CP024138.1|AUK06501.1|2335510_2336152_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLEGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>CP024138.1|AUK06502.1|2336191_2337340_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>CP024138.1|AUK06503.1|2337630_2338842_-|Bcr/CflA-family-drug-resistance-efflux-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVDCQNHGNAEVAHSESH
>CP024138.1|AUK06504.1|2338954_2339887_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>CP024138.1|AUK06505.1|2339883_2340909_-|PurR-family-transcriptional-regulator
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>CP024138.1|AUK06506.1|2340896_2341121_-|hypothetical-protein
MISVFTTSPFRQDRPKFHAYTICVLAIDPFLTLRVVFPAYRNTFVVRKVCKGKRLPCDFAGAEVRVWSEMEWQQ
>CP024138.1|AUK06507.1|2341207_2341297_+|YnhF-family-membrane-protein
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>CP024138.1|AUK06508.1|2341462_2342632_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS

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Crispr_ID: CP024138_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024138_5

4027916-4028048

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of CP024138_5

>merge|CP024138|5|4027916-4028048|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTCCTCACCAATATTGAAAACATGGCGTAGAAAAAAGAAATTTTCAATATTGTTTTATGGATCACCAATATTGAAAG

>CP024138|5|4|4027916-4028048|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTC
CTCACCAATATTGAAAA	CATGGCGTAGAAAAAAGAAATTTTCAATATTGTTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP024138.1\|AUK08054.1\|4029842_4030985_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
CP024138.1\|AUK08058.1\|4034845_4035436_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
CP024138.1\|AUK08044.1\|4019604_4019838_-\|antitoxin	unknown	unknown	gnl\|CDD\|227619
CP024138.1\|AUK08053.1\|4028297_4029812_+\|L-carnitine/gamma-butyrobetaine-antiporter	unknown	unknown	gnl\|CDD\|179568
CP024138.1\|AUK08056.1\|4032392_4033946_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
CP024138.1\|AUK08043.1\|4018455_4019304_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
CP024138.1\|AUK08052.1\|4027054_4027825_-\|protein-FixA	unknown	unknown	gnl\|CDD\|179569
CP024138.1\|AUK08048.1\|4023087_4024419_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
CP024138.1\|AUK08045.1\|4019923_4020403_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
CP024138.1\|AUK08062.1\|4039450_4040599_-\|carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
CP024138.1\|AUK08049.1\|4024477_4024765_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
CP024138.1\|AUK08051.1\|4026098_4027040_-\|protein-FixB	unknown	unknown	gnl\|CDD\|235120
CP024138.1\|AUK08060.1\|4035985_4036204_+\|hypothetical-protein	unknown	unknown	unknown
CP024138.1\|AUK08055.1\|4031102_4032320_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
CP024138.1\|AUK08050.1\|4024761_4026048_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
CP024138.1\|AUK08046.1\|4020594_4022457_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
CP024138.1\|AUK08061.1\|4036211_4039433_-\|carbamoyl-phosphate-synthase-large-chain	unknown	unknown	gnl\|CDD\|235393
CP024138.1\|AUK08057.1\|4034054_4034840_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599
CP024138.1\|AUK08047.1\|4022449_4022980_-\|glutathione-regulated-potassium-efflux-system-ancillary-protein-KefF	unknown	unknown	gnl\|CDD\|234852
CP024138.1\|AUK08059.1\|4035555_4035951_-\|CaiF/GrlA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183154

Protein	Function_ID	Function_description	E-value
CP024138.1\|AUK08054.1\|4029842_4030985_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
CP024138.1\|AUK08058.1\|4034845_4035436_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	4.35289e-143
CP024138.1\|AUK08044.1\|4019604_4019838_-\|antitoxin	gnl\|CDD\|227619	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only].	3.42915e-23
CP024138.1\|AUK08053.1\|4028297_4029812_+\|L-carnitine/gamma-butyrobetaine-antiporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
CP024138.1\|AUK08056.1\|4032392_4033946_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
CP024138.1\|AUK08043.1\|4018455_4019304_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP024138.1\|AUK08052.1\|4027054_4027825_-\|protein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	2.42827e-170
CP024138.1\|AUK08048.1\|4023087_4024419_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4298e-59
CP024138.1\|AUK08045.1\|4019923_4020403_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
CP024138.1\|AUK08062.1\|4039450_4040599_-\|carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
CP024138.1\|AUK08049.1\|4024477_4024765_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
CP024138.1\|AUK08051.1\|4026098_4027040_-\|protein-FixB	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
CP024138.1\|AUK08055.1\|4031102_4032320_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
CP024138.1\|AUK08050.1\|4024761_4026048_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
CP024138.1\|AUK08046.1\|4020594_4022457_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
CP024138.1\|AUK08061.1\|4036211_4039433_-\|carbamoyl-phosphate-synthase-large-chain	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
CP024138.1\|AUK08057.1\|4034054_4034840_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	3.44246e-178
CP024138.1\|AUK08047.1\|4022449_4022980_-\|glutathione-regulated-potassium-efflux-system-ancillary-protein-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
CP024138.1\|AUK08059.1\|4035555_4035951_-\|CaiF/GrlA-family-transcriptional-regulator	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	5.69104e-74

>CP024138.1|AUK08052.1|4027054_4027825_-|protein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASVLAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>CP024138.1|AUK08051.1|4026098_4027040_-|protein-FixB
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLSGKPDERMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLNAAVSNDASAVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDVAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>CP024138.1|AUK08050.1|4024761_4026048_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGLINLIKDGMKGVTVL
>CP024138.1|AUK08049.1|4024477_4024765_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>CP024138.1|AUK08048.1|4023087_4024419_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>CP024138.1|AUK08047.1|4022449_4022980_-|glutathione-regulated-potassium-efflux-system-ancillary-protein-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>CP024138.1|AUK08046.1|4020594_4022457_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSSEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>CP024138.1|AUK08045.1|4019923_4020403_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>CP024138.1|AUK08044.1|4019604_4019838_-|antitoxin
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAAIRWREENAEAIAALNQLADETGCFSDEYRSF
>CP024138.1|AUK08043.1|4018455_4019304_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDMGEGEAAAS
>CP024138.1|AUK08053.1|4028297_4029812_+|L-carnitine/gamma-butyrobetaine-antiporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>CP024138.1|AUK08054.1|4029842_4030985_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>CP024138.1|AUK08055.1|4031102_4032320_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNVMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>CP024138.1|AUK08056.1|4032392_4033946_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSSGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQEDASQLRHICLTDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQNYRATITECIPMMIRTLMVQPLSANDRQHCLREVMFYLNLSEQEKDAFCERFSVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>CP024138.1|AUK08057.1|4034054_4034840_+|crotonobetainyl-CoA-hydratase
MSESLHLTHNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>CP024138.1|AUK08058.1|4034845_4035436_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>CP024138.1|AUK08059.1|4035555_4035951_-|CaiF/GrlA-family-transcriptional-regulator
MCEGCVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>CP024138.1|AUK08060.1|4035985_4036204_+|hypothetical-protein
MTRFAAIKQGHIKIVDISIVCNFTVDKCELNPAYVIKNIDSPKDLLNGQKKRSSSENRISYSIKLADEKYPP
>CP024138.1|AUK08061.1|4036211_4039433_-|carbamoyl-phosphate-synthase-large-chain
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLHAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>CP024138.1|AUK08062.1|4039450_4040599_-|carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEPYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPVQTSAKDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP038506	Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence	11835-11866	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	42147-42178	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	CP042641	Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence	36520-36551	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP034821	Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence	1557-1588	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP027443	Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence	9506-9537	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP027575	Escherichia coli strain 2013C-4081 plasmid unnamed2	94756-94787	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP027223	Escherichia coli strain 2015C-3101 plasmid unnamed2	65534-65565	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP030188	Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence	61916-61947	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP027590	Escherichia coli strain 2014C-3011 plasmid unnamed2	64165-64196	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	20286-20317	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	119284-119315	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_AP018798	Escherichia coli strain E2855 plasmid pE2855-2, complete sequence	85099-85130	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	CP012494	Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence	46688-46719	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	CP027320	Escherichia coli strain 2014C-3084 plasmid unnamed1	42116-42147	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NC_013370	Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence	87237-87268	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP026475	Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence	81853-81884	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	MN510445	Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence	70500-70531	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	MN510447	Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence	47861-47892	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP012491	Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence	62997-63028	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	MH422554	Escherichia phage P1, complete genome	87194-87225	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NC_050152	Enterobacteria phage P7, complete genome	93995-94026	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	MH445380	Escherichia virus P1 isolate transconjugant 2(L-II), complete genome	58645-58676	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NC_031129	Salmonella phage SJ46, complete genome	77363-77394	0	1.0
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	MH445381	Escherichia virus P1, complete genome	56870-56901	0	1.0
CP024138_4	4.1\|2977736\|40\|CP024138\|CRISPRCasFinder	2977736-2977775	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
CP024138_5	5.1\|4027933\|42\|CP024138\|PILER-CR	4027933-4027974	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	1	0.976
CP024138_5	5.2\|4027992\|40\|CP024138\|PILER-CR	4027992-4028031	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	1	0.975
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NZ_CP032392	Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 plasmid p34981_2, complete sequence	28190-28221	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NZ_CP022965	Salmonella enterica subsp. enterica serovar Pullorum strain QJ-2D-Sal plasmid pQJDsal2, complete sequence	29440-29471	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NC_007208	Salmonella enterica OU7025 plasmid pOU1113, complete sequence	19749-19780	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NZ_HG970001	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 plasmid pSG, complete sequence	38393-38424	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NZ_CP032386	Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 plasmid pN53043_2, complete sequence	3653-3684	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NZ_CP032388	Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_1, complete sequence	42554-42585	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NZ_CP030208	Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence	4890-4921	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NZ_CP032450	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 plasmid pSDU1-USMARC-69838, complete sequence	68762-68793	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NC_011204	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74, complete sequence	31020-31051	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NC_019106	Salmonella enterica subsp. enterica serovar Dublin plasmid pSD_77, complete sequence	75580-75611	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NC_019112	Salmonella enterica subsp. enterica serovar Pullorum plasmid pSPUV, complete sequence	20322-20353	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NZ_CP012348	Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 plasmid pCFSAN000725_01, complete sequence	42630-42661	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NZ_CP019180	Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 plasmid pATCC39184, complete sequence	59477-59508	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NZ_CP032394	Salmonella enterica subsp. enterica serovar Dublin strain CVM 22453 plasmid p22453_2, complete sequence	17037-17068	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NC_010422	Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence	19784-19815	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NZ_CP032381	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU2-USMARC-69807, complete sequence	47366-47397	2	0.938
CP024138_2	2.7\|1139023\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139023-1139054	32	NZ_CP032447	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 plasmid pSDU1-USMARC-69840, complete sequence	58031-58062	2	0.938
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	17440-17471	2	0.938
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP017632	Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence	122310-122341	2	0.938
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP030285	Escherichia coli strain E308 plasmid pLKSZ04, complete sequence	6029-6060	2	0.938
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	NZ_CP036204	Escherichia coli strain L725 plasmid punnamed2, complete sequence	15121-15152	2	0.938
CP024138_2	2.11\|1139267\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139267-1139298	32	MN510446	Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence	131402-131433	2	0.938
CP024138_3	3.1\|2332231\|38\|CP024138\|CRISPRCasFinder	2332231-2332268	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP024138_2	2.1\|1138657\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1138657-1138688	32	NZ_CP022140	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence	27735-27766	6	0.812
CP024138_1	1.2\|1112561\|30\|CP024138\|PILER-CR	1112561-1112590	30	MN693193	Marine virus AFVG_25M440, complete genome	51418-51447	7	0.767
CP024138_1	1.2\|1112561\|30\|CP024138\|PILER-CR	1112561-1112590	30	MK250029	Prevotella phage Lak-C1, complete genome	375741-375770	8	0.733
CP024138_1	1.2\|1112561\|30\|CP024138\|PILER-CR	1112561-1112590	30	MK250016	Prevotella phage Lak-A1, complete genome	410514-410543	8	0.733
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_LT904880	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3	100861-100892	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_LT904895	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2	32455-32486	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP012254	Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence	90639-90670	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029647	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence	24048-24079	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_LT904853	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2	2158-2189	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NC_003385	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence	69550-69581	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029859	Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence	33422-33453	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029847	Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence	64890-64921	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029916	Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence	3001-3032	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029893	Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence	30210-30241	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029876	Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence	21803-21834	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029884	Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence	5429-5460	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029961	Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence	76887-76918	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029849	Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence	9632-9663	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029857	Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence	17697-17728	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029929	Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence	73527-73558	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029865	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence	87633-87664	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_LT883154	Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2	32810-32841	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029905	Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence	30728-30759	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029851	Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence	44207-44238	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP040567	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence	17468-17499	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029889	Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence	17968-17999	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029891	Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence	18575-18606	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029898	Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence	21136-21167	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029951	Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence	47286-47317	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029867	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence	33258-33289	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029901	Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence	32901-32932	8	0.75
CP024138_1	1.7\|1112683\|32\|CP024138\|CRISPRCasFinder,CRT	1112683-1112714	32	NZ_CP029921	Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence	100446-100477	8	0.75
CP024138_2	2.1\|1138657\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1138657-1138688	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	70246-70277	8	0.75
CP024138_2	2.8\|1139084\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1139084-1139115	32	NZ_CP042263	Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence	173595-173626	8	0.75
CP024138_1	1.2\|1112561\|30\|CP024138\|PILER-CR	1112561-1112590	30	HQ331142	Salmonella phage S16, complete genome	97369-97398	9	0.7
CP024138_1	1.8\|1112744\|32\|CP024138\|CRISPRCasFinder,CRT,PILER-CR	1112744-1112775	32	AP014399	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, * SEQUENCING IN PROGRESS *, 2 ordered pieces	35411-35442	9	0.719
CP024138_1	1.8\|1112744\|32\|CP024138\|CRISPRCasFinder,CRT,PILER-CR	1112744-1112775	32	AP013383	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13	29583-29614	9	0.719
CP024138_1	1.9\|1112805\|32\|CP024138\|CRISPRCasFinder,CRT,PILER-CR	1112805-1112836	32	NZ_CP021994	Cryobacterium sp. LW097 plasmid unnamed1	33387-33418	9	0.719
CP024138_2	2.1\|1138657\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1138657-1138688	32	NZ_CP011404	Lactobacillus salivarius str. Ren plasmid pR1, complete sequence	100759-100790	9	0.719
CP024138_2	2.1\|1138657\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1138657-1138688	32	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	48192-48223	9	0.719
CP024138_2	2.1\|1138657\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1138657-1138688	32	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	248214-248245	9	0.719
CP024138_2	2.1\|1138657\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1138657-1138688	32	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	140326-140357	9	0.719
CP024138_2	2.1\|1138657\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1138657-1138688	32	NZ_CP017110	Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence	20889-20920	9	0.719
CP024138_2	2.1\|1138657\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1138657-1138688	32	NZ_CP029460	Clostridium novyi strain 150557 plasmid pCN2, complete sequence	45232-45263	9	0.719
CP024138_1	1.10\|1112866\|32\|CP024138\|CRISPRCasFinder,CRT,PILER-CR	1112866-1112897	32	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	1163456-1163487	10	0.688
CP024138_2	2.1\|1138657\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1138657-1138688	32	NC_018511	Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence	60-91	10	0.688
CP024138_2	2.1\|1138657\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1138657-1138688	32	NC_001446	Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence	4548-4579	10	0.688
CP024138_2	2.1\|1138657\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1138657-1138688	32	NZ_CP009345	Bacillus thuringiensis HD1002 plasmid 6, complete sequence	1165-1196	10	0.688
CP024138_2	2.1\|1138657\|32\|CP024138\|PILER-CR,CRISPRCasFinder,CRT	1138657-1138688	32	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	105460-105491	10	0.688
CP024138_5	5.2\|4027992\|40\|CP024138\|PILER-CR	4027992-4028031	40	NZ_CP034685	Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence	143235-143274	11	0.725

1. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

2. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

3. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

4. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

5. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

6. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

7. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

8. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

9. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

10. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

11. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

12. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

13. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

14. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

15. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

16. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

17. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

18. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

19. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

20. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

21. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

22. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

23. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

24. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

25. spacer 4.1|2977736|40|CP024138|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

26. spacer 5.1|4027933|42|CP024138|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

tgtcacacgcagataaatccaactttcaatattgttaagctc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
***************************************.**

27. spacer 5.2|4027992|40|CP024138|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagaaaaaagaaattttcaatattgttttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********************************.*******

28. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032392 (Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 plasmid p34981_2, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

29. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022965 (Salmonella enterica subsp. enterica serovar Pullorum strain QJ-2D-Sal plasmid pQJDsal2, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

30. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NC_007208 (Salmonella enterica OU7025 plasmid pOU1113, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

31. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG970001 (Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 plasmid pSG, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

32. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032386 (Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 plasmid pN53043_2, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

33. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032388 (Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_1, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

34. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030208 (Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

35. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032450 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 plasmid pSDU1-USMARC-69838, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

36. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NC_011204 (Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

37. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NC_019106 (Salmonella enterica subsp. enterica serovar Dublin plasmid pSD_77, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

38. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NC_019112 (Salmonella enterica subsp. enterica serovar Pullorum plasmid pSPUV, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

39. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012348 (Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 plasmid pCFSAN000725_01, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

40. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019180 (Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 plasmid pATCC39184, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

41. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032394 (Salmonella enterica subsp. enterica serovar Dublin strain CVM 22453 plasmid p22453_2, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

42. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NC_010422 (Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

43. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032381 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU2-USMARC-69807, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

44. spacer 2.7|1139023|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032447 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 plasmid pSDU1-USMARC-69840, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

45. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

46. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

47. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

48. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

49. spacer 2.11|1139267|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacgttatgaaccgacattcatgt	Protospacer
************ * *****************

50. spacer 3.1|2332231|38|CP024138|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

51. spacer 2.1|1138657|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022140 (Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

cattgaa-aacattgcctttattttattttttg	CRISPR spacer
-attaaatcacattccctctattttattttttc	Protospacer
 ***.**  ***** ***.*************

52. spacer 1.2|1112561|30|CP024138|PILER-CR matches to MN693193 (Marine virus AFVG_25M440, complete genome) position: , mismatch: 7, identity: 0.767

gcaattaatttagttccagatgctgcgaaa	CRISPR spacer
agaattaatttagtaccagatggtggacaa	Protospacer
. ************ ******* ** . **

53. spacer 1.2|1112561|30|CP024138|PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 8, identity: 0.733

gcaattaatttagttccagatgctgcgaaa	CRISPR spacer
gcaattaattcagttccagatacaaaacga	Protospacer
**********.**********.* . . .*

54. spacer 1.2|1112561|30|CP024138|PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 8, identity: 0.733

gcaattaatttagttccagatgctgcgaaa	CRISPR spacer
gcaattaattcagttccagatacaaaacga	Protospacer
**********.**********.* . . .*

55. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_LT904880 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

56. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_LT904895 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

57. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP012254 (Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttatca	Protospacer
******** *****.********  **  .*.

58. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029647 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

59. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_LT904853 (Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

60. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NC_003385 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

61. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029859 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

62. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029847 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

63. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029916 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

64. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029893 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

65. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029876 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

66. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029884 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

67. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029961 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

68. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029849 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

69. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029857 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

70. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029929 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

71. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029865 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

72. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_LT883154 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

73. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029905 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

74. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029851 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

75. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP040567 (Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

76. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029889 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

77. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029891 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

78. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029898 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

79. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029951 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

80. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029867 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

81. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029901 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

82. spacer 1.7|1112683|32|CP024138|CRISPRCasFinder,CRT matches to NZ_CP029921 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

83. spacer 2.1|1138657|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 8, identity: 0.75

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgctaaaacattggctttatttaatttttta	Protospacer
.  . ********* ******** *******.

84. spacer 2.8|1139084|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042263 (Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ccgccgtgccagtgatcctcatacggcctgtt	CRISPR spacer
cggtgcagccagtgatcgtcatacagcctgtg	Protospacer
* *.   ********** ******.******

85. spacer 1.2|1112561|30|CP024138|PILER-CR matches to HQ331142 (Salmonella phage S16, complete genome) position: , mismatch: 9, identity: 0.7

gcaattaatttagttccagatgctgcgaaa	CRISPR spacer
acttgccgtttagttccagatgctgctaat	Protospacer
.*   . .****************** **

86. spacer 1.8|1112744|32|CP024138|CRISPRCasFinder,CRT,PILER-CR matches to AP014399 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.719

ctaggataaattaaaagacaaaattgcagcaa	CRISPR spacer
gtcagataaattaaaagagataattgcaaatt	Protospacer
 * .************** * *******.

87. spacer 1.8|1112744|32|CP024138|CRISPRCasFinder,CRT,PILER-CR matches to AP013383 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13) position: , mismatch: 9, identity: 0.719

ctaggataaattaaaagacaaaattgcagcaa	CRISPR spacer
gtcagataaattaaaagagataattgcaaatt	Protospacer
 * .************** * *******.

88. spacer 1.9|1112805|32|CP024138|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

gagcgaccagtatcaagatcgacaggttttgc	CRISPR spacer
gagcgaccagcagcaagatcgaccagacctca	Protospacer
**********.* ********** .* ..*

89. spacer 2.1|1138657|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011404 (Lactobacillus salivarius str. Ren plasmid pR1, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

90. spacer 2.1|1138657|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

91. spacer 2.1|1138657|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

92. spacer 2.1|1138657|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

93. spacer 2.1|1138657|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017110 (Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

94. spacer 2.1|1138657|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029460 (Clostridium novyi strain 150557 plasmid pCN2, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
aaaaaagaacattgtatttattttatttttaa	Protospacer
 *  .*.*******. ************** .

95. spacer 1.10|1112866|32|CP024138|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 10, identity: 0.688

atcgatatgtacgttagcgaggggatcacgca	CRISPR spacer
ggcgatatttacgttagcgacgggactgacct	Protospacer
. ****** *********** ****...  *

96. spacer 2.1|1138657|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NC_018511 (Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgttcttacatttcttttattttattttttt	Protospacer
.  *    ***** *.***************

97. spacer 2.1|1138657|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NC_001446 (Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgttcttacatttcttttattttattttttt	Protospacer
.  *    ***** *.***************

98. spacer 2.1|1138657|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009345 (Bacillus thuringiensis HD1002 plasmid 6, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgttcttacatttcttttattttattttttt	Protospacer
.  *    ***** *.***************

99. spacer 2.1|1138657|32|CP024138|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
accttaaaacatttcctttgttttatttagat	Protospacer
  .* ******** *****.********

100. spacer 5.2|4027992|40|CP024138|PILER-CR matches to NZ_CP034685 (Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence) position: , mismatch: 11, identity: 0.725

catggcgtagaaaaaagaaattttcaatattgttttatgg-	CRISPR spacer
aacacaatagaaaaaagaaattttcaaccttg-tttatact	Protospacer
 *..  .********************. *** *****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

55432 : 131190

Stx2-converting_phage(27.27%)

integrase,transposase

attL 66463:66477|attR 131307:131321

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK04414.1\|55432_56706_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.8e-175	98.3
AUK04415.1\|56854_58903_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	1.1e-11	33.5
AUK04416.1\|61463_61655_+	hypothetical protein	A0A0N7BTS3	Escherichia_phage	2.4e-06	96.2
AUK04417.1\|62633_63200_+	inovirus Gp2 family protein	NA	NA	NA	NA
AUK04418.1\|63457_64030_+	hypothetical protein	NA	NA	NA	NA
AUK04419.1\|64098_64335_+	AlpA family transcriptional regulator	NA	NA	NA	NA
AUK04420.1\|64600_65149_+	hypothetical protein	NA	NA	NA	NA
AUK04421.1\|65167_65647_-	proQ/FINO family protein	Q2A0A1	Sodalis_phage	3.5e-09	42.5
66463:66477	attL	NA	NA	NA	NA
AUK04422.1\|66546_66981_+	DNA-binding protein	NA	NA	NA	NA
AUK04423.1\|69446_70331_+	hemolysin E	NA	NA	NA	NA
AUK04424.1\|71570_72092_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA
AUK04425.1\|72088_73042_+	protein FecR	NA	NA	NA	NA
AUK04426.1\|73128_75453_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
AUK04427.1\|75497_76400_+	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
AUK04428.1\|76396_77395_+	iron-dicitrate transporter permease subunit	NA	NA	NA	NA
AUK04429.1\|77391_78348_+	iron-dicitrate transporter subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
AUK04430.1\|78348_79116_+	Fe(3+) dicitrate transport ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
AUK04431.1\|79673_80087_-	hypothetical protein	NA	NA	NA	NA
AUK04432.1\|80928_82080_-\|transposase	IS30 family transposase IS30	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
AUK04433.1\|84066_84414_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	4.4e-46	75.7
AUK04434.1\|84413_85064_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.4e-15	42.7
AUK04435.1\|85145_85325_-	hypothetical protein	NA	NA	NA	NA
AUK04436.1\|85355_86720_-	phosphoglycerate transporter PgtP	NA	NA	NA	NA
AUK04437.1\|87064_88336_+	phosphoglycerate transport regulator PgtC	NA	NA	NA	NA
AUK04438.1\|88332_90342_+	two-component system sensor histidine kinase PgtB	NA	NA	NA	NA
AUK08860.1\|90331_91579_+	two-component system response regulator PgtA	NA	NA	NA	NA
AUK04439.1\|91707_92235_+	hypothetical protein	NA	NA	NA	NA
AUK08861.1\|92252_92501_-	osmoprotectant transport activator ProQ	Q2A0A1	Sodalis_phage	6.4e-07	39.1
AUK04440.1\|92569_92761_-	osmoprotectant transport activator ProQ	NA	NA	NA	NA
AUK04441.1\|93356_94376_-	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	4.3e-17	25.8
AUK08862.1\|94633_95077_+	PTS ascorbate transporter subunit IIA	NA	NA	NA	NA
AUK04442.1\|95155_95428_+	PTS mannitol transporter subunit IIB	NA	NA	NA	NA
AUK04443.1\|95450_96839_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
AUK04444.1\|96835_97666_+	transketolase	NA	NA	NA	NA
AUK04445.1\|97658_98612_+	transketolase	NA	NA	NA	NA
AUK04446.1\|99191_99389_-	hypothetical protein	NA	NA	NA	NA
AUK04447.1\|99838_100999_+	immunoglobulin-binding protein	Q9MCI8	Enterobacteria_phage	4.8e-20	76.1
AUK08863.1\|101291_101516_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
AUK04448.1\|101872_102211_-	lysozyme inhibitor	NA	NA	NA	NA
AUK04449.1\|102715_103405_-	putative N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
AUK04450.1\|104953_105700_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
AUK04451.1\|105714_107256_-\|transposase	IS21 family transposase ISEc12	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
AUK04452.1\|107370_107586_-	hypothetical protein	NA	NA	NA	NA
AUK04453.1\|107712_108537_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
AUK04454.1\|108693_110037_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
AUK04455.1\|110156_111430_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3
AUK04456.1\|112867_114184_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA
AUK04457.1\|116527_118498_+	ligand-gated channel	NA	NA	NA	NA
AUK04458.1\|118516_119308_+	DUF4198 domain-containing protein	NA	NA	NA	NA
AUK04459.1\|119552_119726_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AUK08864.1\|119887_120268_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
AUK04460.1\|120264_120612_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	4.8e-61	99.1
AUK04461.1\|120707_122300_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.9e-181	63.4
AUK04462.1\|122330_122681_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	1.2e-40	66.4
AUK04463.1\|122677_123103_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
AUK04464.1\|125315_128813_+	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	2.7e-98	34.8
AUK04465.1\|130005_131190_-\|integrase	integrase	Q7M297	Enterobacteria_phage	2.6e-162	69.9
131307:131321	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1155681 : 1162821

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK05411.1\|1155681_1156320_-	class II aldolase	A0A077SK32	Escherichia_phage	1.8e-82	74.5
AUK05412.1\|1156316_1157579_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
AUK05413.1\|1157575_1158484_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.5e-117	76.5
AUK05414.1\|1158679_1159447_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	7.4e-70	57.4
AUK05415.1\|1159497_1160154_-	serine/threonine protein phosphatase	A0A077SLQ6	Escherichia_phage	4.3e-50	46.1
AUK05416.1\|1160259_1162821_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	7.8e-31	20.7

DBSCAN-SWA_3

1526282 : 1583616

Enterobacteria_phage(85.11%)

integrase,portal,capsid,holin,plate,tail,terminase,transposase,tRNA

attL 1533176:1533190|attR 1581233:1581247

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK05745.1\|1526282_1528289_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
AUK05746.1\|1528447_1529668_+	3-oxoacyl-ACP synthase I	NA	NA	NA	NA
AUK08914.1\|1529769_1529991_-	hypothetical protein	NA	NA	NA	NA
AUK05747.1\|1529932_1531111_+	arabinose transporter	NA	NA	NA	NA
AUK05748.1\|1531107_1532103_-	flagella biosynthesis regulator Flk	NA	NA	NA	NA
AUK05749.1\|1532360_1533254_-	type VI secretion protein	NA	NA	NA	NA
1533176:1533190	attL	NA	NA	NA	NA
AUK05750.1\|1533258_1533591_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
AUK05751.1\|1534103_1534931_-	hypothetical protein	NA	NA	NA	NA
AUK05752.1\|1535346_1535487_-	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
AUK05753.1\|1535492_1535681_+	hypothetical protein	Q7Y2U2	Escherichia_phage	5.3e-06	61.9
AUK05754.1\|1535677_1535938_-	hypothetical protein	NA	NA	NA	NA
AUK05755.1\|1535980_1537090_-	late control protein	A0A0A7NQ97	Enterobacteria_phage	5.3e-194	93.8
AUK05756.1\|1537247_1538432_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	4.7e-225	99.0
AUK05757.1\|1538431_1538944_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	1.5e-90	97.1
AUK05758.1\|1538998_1539364_+\|tail	phage tail protein	A0A0A7NPZ0	Enterobacteria_phage	1.7e-56	98.3
AUK05759.1\|1539291_1539528_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	8.7e-22	96.1
AUK05760.1\|1539514_1542322_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	93.4
AUK05761.1\|1542328_1542823_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	3.1e-85	97.0
AUK05762.1\|1543011_1543557_+	transferase	NA	NA	NA	NA
AUK05763.1\|1543520_1544138_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.6e-85	80.9
AUK05764.1\|1544137_1546138_-\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	1.8e-112	98.6
AUK05765.1\|1546140_1546671_-\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	5.1e-94	99.4
AUK05766.1\|1546663_1547560_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	1.1e-154	97.7
AUK05767.1\|1547563_1547914_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	100.0
AUK05768.1\|1547910_1548492_-\|plate	baseplate assembly protein	A0A0A7NRZ3	Enterobacteria_phage	7.3e-102	96.9
AUK05769.1\|1548488_1549124_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	2.9e-112	97.6
AUK05770.1\|1549116_1549584_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	1.3e-85	98.7
AUK08915.1\|1549570_1549750_-	hypothetical protein	NA	NA	NA	NA
AUK05771.1\|1549721_1550129_-	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	4.6e-63	94.1
AUK05772.1\|1550125_1550518_-	peptidase M15	A0A0A7NQ86	Enterobacteria_phage	1.3e-70	99.2
AUK05773.1\|1550514_1550838_-\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
AUK05774.1\|1550840_1551041_-\|tail	phage tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
AUK05775.1\|1551040_1551535_-\|capsid	capsid assembly protein	A0A0A7NPU2	Enterobacteria_phage	4.6e-89	98.2
AUK05776.1\|1551637_1552438_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	4.2e-124	88.0
AUK05777.1\|1552483_1553536_-\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	2.1e-192	96.9
AUK05778.1\|1553559_1554396_-\|capsid	phage capsid protein	A0A0A7NRY7	Enterobacteria_phage	3.0e-149	98.9
AUK05779.1\|1554550_1556302_+	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.6
AUK05780.1\|1556301_1557348_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.5e-206	100.0
AUK05781.1\|1557623_1557803_-	hypothetical protein	A0A0A7NQ80	Enterobacteria_phage	5.4e-08	96.2
AUK08916.1\|1557732_1557984_+	hypothetical protein	NA	NA	NA	NA
AUK05782.1\|1557874_1558405_+	hypothetical protein	NA	NA	NA	NA
AUK05783.1\|1558495_1558879_-	hypothetical protein	Q5G8U8	Enterobacteria_phage	2.6e-31	57.9
AUK05784.1\|1558942_1559254_-	chromosome partitioning protein	A0A0A7NPT5	Enterobacteria_phage	2.2e-49	96.1
AUK05785.1\|1559258_1560218_-	recombinase	A0A0A7NPX4	Enterobacteria_phage	2.0e-181	100.0
AUK08917.1\|1560294_1562979_-	replication protein	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	96.3
AUK05786.1\|1563123_1563489_-	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	6.6e-61	96.7
AUK05787.1\|1563561_1563792_-	derepression protein	A0A0A7NV48	Enterobacteria_phage	2.6e-31	96.1
AUK05788.1\|1563848_1564064_+	hypothetical protein	NA	NA	NA	NA
AUK05789.1\|1564114_1564414_-	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	1.8e-40	88.8
AUK05790.1\|1564410_1564656_-	MarR family transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	1.3e-39	97.5
AUK05791.1\|1564652_1564856_-	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.9e-26	86.6
AUK05792.1\|1565052_1565295_-	DUF4754 domain-containing protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
AUK05793.1\|1565306_1565594_-	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	3.9e-32	75.8
AUK05794.1\|1565604_1565946_-	DUF4761 domain-containing protein	A0A0A7NV42	Enterobacteria_phage	2.3e-55	92.2
AUK05795.1\|1566198_1566405_-	hypothetical protein	NA	NA	NA	NA
AUK05796.1\|1566411_1566699_-	hypothetical protein	A0A0M4RCW1	Salmonella_phage	4.3e-23	52.6
AUK08918.1\|1566812_1567133_+	XRE family transcriptional regulator	Q1JS37	Enterobacteria_phage	1.4e-14	43.2
AUK05797.1\|1567229_1568234_+\|integrase	integrase	A0A0M4RTQ0	Salmonella_phage	4.5e-99	55.7
AUK05798.1\|1568392_1569550_+	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	8.7e-22	29.1
AUK05799.1\|1569615_1570629_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AUK05800.1\|1570628_1571441_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
AUK05801.1\|1571523_1572183_+	hypothetical protein	NA	NA	NA	NA
AUK05802.1\|1572338_1573253_+	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
AUK05803.1\|1573322_1574591_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
AUK05804.1\|1574580_1575231_+	cell division protein DedD	NA	NA	NA	NA
AUK05805.1\|1575489_1575978_+	colicin V production protein	NA	NA	NA	NA
AUK05806.1\|1576014_1577532_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.5e-87	44.0
AUK05807.1\|1577626_1578196_+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein	NA	NA	NA	NA
AUK05808.1\|1578461_1579244_+	lysine/arginine/ornithine ABC transporter substrate-binding protein	NA	NA	NA	NA
AUK05809.1\|1579464_1580247_+	histidine ABC transporter substrate-binding protein HisJ	NA	NA	NA	NA
AUK05810.1\|1580336_1581023_+	histidine ABC transporter permease	NA	NA	NA	NA
AUK05811.1\|1581019_1581736_+	histidine ABC transporter permease HisM	NA	NA	NA	NA
1581233:1581247	attR	NA	NA	NA	NA
AUK05812.1\|1581743_1582517_+	histidine transport ATP-binding protein HisP	M1I0T9	Acanthocystis_turfacea_Chlorella_virus	2.1e-08	28.2
AUK05813.1\|1582713_1583616_+\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	1.8e-67	44.2

DBSCAN-SWA_4

1777487 : 1786932

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK05988.1\|1777487_1778414_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.8e-23	30.8
AUK05989.1\|1778418_1779150_+	osmoprotectant uptake system permease	NA	NA	NA	NA
AUK05990.1\|1779130_1779238_-	hypothetical protein	NA	NA	NA	NA
AUK05991.1\|1779297_1780029_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
AUK05992.1\|1780250_1781936_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AUK05993.1\|1781932_1782652_+	DNA-binding response regulator	NA	NA	NA	NA
AUK05994.1\|1782698_1783169_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
AUK05995.1\|1783209_1783671_-	hypothetical protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
AUK05996.1\|1783828_1785799_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.5
AUK05997.1\|1785795_1786932_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	3.6e-161	97.1

DBSCAN-SWA_5

2003658 : 2076484

Escherichia_phage(34.69%)

integrase,portal,protease,capsid,holin,head,tail,terminase

attL 2065880:2065897|attR 2081574:2081591

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK06159.1\|2003658_2004921_-\|integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	2.6e-72	38.8
AUK08926.1\|2005258_2006056_-	protein MtfA	NA	NA	NA	NA
AUK06160.1\|2006291_2007317_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	5.8e-102	57.6
AUK06161.1\|2007316_2007520_-	DUF4224 domain-containing protein	NA	NA	NA	NA
AUK06162.1\|2007578_2010050_-	exonuclease	K7PLW7	Enterobacteria_phage	3.2e-58	60.3
AUK06163.1\|2010142_2010334_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AUK06164.1\|2010330_2010519_-	cell division inhibition protein DicB	NA	NA	NA	NA
AUK06165.1\|2011087_2011306_-	hypothetical protein	NA	NA	NA	NA
AUK06166.1\|2011335_2011506_-	hypothetical protein	NA	NA	NA	NA
AUK08927.1\|2011465_2011621_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	3.0e-07	53.2
AUK06167.1\|2011918_2012338_-	transcriptional regulator	A0A2I6PIE7	Escherichia_phage	4.2e-19	47.5
AUK06168.1\|2012417_2012672_+	hypothetical protein	A0A2I6PIE5	Escherichia_phage	2.8e-18	60.3
AUK06169.1\|2012668_2013094_+	Rha family transcriptional regulator	NA	NA	NA	NA
AUK06170.1\|2013165_2014236_+	phage replisome organizer	A0A088CD36	Shigella_phage	1.9e-63	65.2
AUK06171.1\|2014276_2014702_+	DUF977 domain-containing protein	A0A0U2QQN3	Escherichia_phage	4.1e-62	93.3
AUK06172.1\|2014876_2015542_+	hypothetical protein	NA	NA	NA	NA
AUK06173.1\|2015722_2015935_+	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	6.6e-29	95.7
AUK06174.1\|2016102_2016381_+	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
AUK06175.1\|2016382_2017441_+	hypothetical protein	A0A291AWV9	Escherichia_phage	3.1e-90	48.9
AUK06176.1\|2017441_2017807_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	3.2e-39	67.5
AUK06177.1\|2017803_2018493_+	antiterminator	I6PDF8	Cronobacter_phage	1.8e-59	50.6
AUK06178.1\|2018523_2018646_+	antiterminator	NA	NA	NA	NA
AUK06179.1\|2019305_2019521_+\|holin	holin	M1FN85	Enterobacteria_phage	5.3e-34	98.6
AUK06180.1\|2019525_2019876_+	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	5.4e-36	92.9
AUK06181.1\|2019939_2020473_+	lysozyme	Q08J98	Stx2-converting_phage	3.8e-97	91.5
AUK06182.1\|2020689_2020872_+	hypothetical protein	K7PHU6	Enterobacteria_phage	2.7e-15	75.0
AUK06183.1\|2020976_2021327_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	1.9e-57	90.4
AUK06184.1\|2021462_2021978_-	hypothetical protein	A0A077K9U2	Edwardsiella_phage	6.3e-33	48.8
AUK06185.1\|2022206_2022689_+\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	7.4e-84	96.9
AUK06186.1\|2022688_2024446_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	98.9
AUK06187.1\|2024593_2025820_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	4.1e-203	82.8
AUK06188.1\|2025812_2026412_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.9e-89	81.0
AUK06189.1\|2026426_2027644_+\|capsid	phage major capsid protein	A0A1W6JP20	Morganella_phage	6.1e-151	67.4
AUK06190.1\|2027720_2028038_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	6.2e-23	50.5
AUK06191.1\|2028046_2028385_+\|head,tail	head-tail adaptor protein	A0A1B5FP90	Escherichia_phage	7.5e-51	90.2
AUK06192.1\|2028381_2028831_+	hypothetical protein	S4TR46	Salmonella_phage	1.0e-63	80.5
AUK06193.1\|2028827_2029172_+	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	1.4e-55	97.4
AUK06194.1\|2029232_2029937_+\|tail	phage tail protein	A0A1B5FP82	Escherichia_phage	3.7e-116	94.4
AUK06195.1\|2029936_2030323_+\|tail	phage tail protein	A0A1B5FP91	Escherichia_phage	8.9e-64	100.0
AUK08928.1\|2030364_2030625_+	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	1.6e-40	97.7
AUK06196.1\|2030671_2033899_+\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	95.9
AUK06197.1\|2033876_2034233_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.8e-40	66.7
AUK06198.1\|2034232_2034931_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.1e-128	95.7
AUK06199.1\|2034936_2035680_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.1e-150	97.6
AUK06200.1\|2035577_2036225_+\|tail	phage tail protein	A5LH42	Enterobacteria_phage	7.8e-113	98.1
AUK06201.1\|2036285_2039984_+	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	74.8
AUK06202.1\|2040051_2040651_+	Ail/Lom family protein	H6WZM8	Escherichia_phage	4.2e-105	94.0
AUK06203.1\|2040715_2042782_+\|tail	phage tail protein	A0A1X7QGG5	Escherichia_phage	8.4e-161	66.9
AUK06204.1\|2042778_2043057_+	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	7.9e-22	50.5
AUK06205.1\|2043066_2043357_+	hypothetical protein	NA	NA	NA	NA
AUK06206.1\|2043856_2044570_+	toxin	A5LH52	Enterobacteria_phage	2.9e-137	100.0
AUK06207.1\|2044566_2045388_+	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	1.5e-153	100.0
AUK06208.1\|2045384_2045957_+	toxin	A5LH54	Enterobacteria_phage	5.3e-105	98.9
AUK06209.1\|2046661_2046991_-	hypothetical protein	NA	NA	NA	NA
AUK06210.1\|2047026_2047677_-	metal-binding protein ZinT	NA	NA	NA	NA
AUK06211.1\|2047933_2048569_-	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA
AUK06212.1\|2048569_2049574_-	mononuclear molybdenum enzyme YedY	NA	NA	NA	NA
AUK06213.1\|2049682_2050096_-	5-hydroxyisourate hydrolase	NA	NA	NA	NA
AUK08929.1\|2050228_2050900_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.4e-32	35.6
AUK06214.1\|2050899_2052258_+	two-component sensor histidine kinase	Q8QKV7	Ectocarpus_siliculosus_virus	3.0e-05	19.4
AUK06215.1\|2052365_2053217_-	protein deglycase HchA	NA	NA	NA	NA
AUK06216.1\|2053808_2054867_-	hypothetical protein	Q1MVN1	Enterobacteria_phage	6.6e-93	49.3
AUK06217.1\|2055835_2056531_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.1e-07	28.0
AUK06218.1\|2056597_2058016_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.4e-101	55.6
AUK06219.1\|2057996_2058467_+	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	2.6e-33	47.6
AUK06220.1\|2058455_2059376_-	EamA family transporter	NA	NA	NA	NA
AUK06221.1\|2059548_2060466_+	hypothetical protein	NA	NA	NA	NA
AUK06222.1\|2060544_2060727_+	DUF2158 domain-containing protein	NA	NA	NA	NA
AUK08930.1\|2060788_2060977_+	hypothetical protein	NA	NA	NA	NA
AUK06223.1\|2062588_2063404_-	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
AUK06224.1\|2063702_2063930_-	DUF2525 domain-containing protein	NA	NA	NA	NA
AUK08931.1\|2063917_2064106_+	hypothetical protein	NA	NA	NA	NA
AUK06225.1\|2064038_2064281_+	DsrB protein	NA	NA	NA	NA
AUK06226.1\|2064324_2064948_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
AUK06227.1\|2065237_2066023_-	flagellar type III secretion system protein FliR	NA	NA	NA	NA
2065880:2065897	attL	NA	NA	NA	NA
AUK06228.1\|2066031_2066301_-	flagellar biosynthetic protein FliQ	NA	NA	NA	NA
AUK06229.1\|2066310_2067048_-	flagellar biosynthetic protein FliP	NA	NA	NA	NA
AUK06230.1\|2067047_2067413_-	flagellar biosynthesis protein FliO	NA	NA	NA	NA
AUK06231.1\|2067415_2067829_-	flagellar motor switch protein FliN	NA	NA	NA	NA
AUK06232.1\|2067825_2068830_-	flagellar motor switch protein FliM	NA	NA	NA	NA
AUK06233.1\|2068834_2069299_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA
AUK06234.1\|2069403_2070531_-	flagellar hook-length control protein FliK	NA	NA	NA	NA
AUK06235.1\|2070527_2070971_-	flagellar protein FliJ	NA	NA	NA	NA
AUK06236.1\|2070989_2072363_-	flagellum-specific ATP synthase FliI	NA	NA	NA	NA
AUK06237.1\|2072362_2073049_-	flagellar assembly protein FliH	NA	NA	NA	NA
AUK06238.1\|2073041_2074037_-	flagellar motor switch protein FliG	NA	NA	NA	NA
AUK06239.1\|2074029_2075688_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA
AUK08932.1\|2075902_2076217_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
AUK06240.1\|2076304_2076484_-\|integrase	integrase	NA	NA	NA	NA
2081574:2081591	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2405890 : 2469588

Enterobacteria_phage(41.67%)

integrase,portal,protease,lysis,tail

attL 2413467:2413482|attR 2442773:2442788

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK06568.1\|2405890_2406712_-\|protease	serine protease	NA	NA	NA	NA
AUK06569.1\|2406811_2406895_-	hypothetical protein	NA	NA	NA	NA
AUK06570.1\|2406987_2407323_-	acid shock protein	NA	NA	NA	NA
AUK06571.1\|2407720_2408974_-	MFS transporter	NA	NA	NA	NA
AUK06572.1\|2409080_2409974_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUK06573.1\|2410108_2411329_+	ROK family transcriptional regulator	NA	NA	NA	NA
AUK06574.1\|2411453_2412149_+	dethiobiotin synthase	NA	NA	NA	NA
AUK08950.1\|2412101_2413394_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
2413467:2413482	attL	NA	NA	NA	NA
AUK06575.1\|2413551_2414166_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	1.1e-28	36.3
AUK06576.1\|2414208_2415063_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
AUK06577.1\|2415064_2415682_-	dimethylsulfoxide reductase	A0A077SL61	Escherichia_phage	9.5e-76	59.6
AUK06578.1\|2418176_2420603_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	3.8e-213	49.1
AUK06579.1\|2420801_2421107_-	DUF1161 domain-containing protein	NA	NA	NA	NA
AUK08951.1\|2421214_2421925_+	YnfC family lipoprotein	NA	NA	NA	NA
AUK06580.1\|2421927_2422488_-	spermidine acetyltransferase	NA	NA	NA	NA
AUK06581.1\|2422522_2422864_-	hypothetical protein	NA	NA	NA	NA
AUK06582.1\|2422998_2423325_+	hypothetical protein	A0A218MNG8	uncultured_virus	7.6e-24	55.6
AUK06583.1\|2423361_2423550_+	hypothetical protein	NA	NA	NA	NA
AUK06584.1\|2423530_2424745_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
AUK06585.1\|2424756_2425776_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	3.3e-17	26.2
AUK06586.1\|2425833_2425962_+	transporter	NA	NA	NA	NA
AUK06587.1\|2425963_2427259_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	1.5e-155	62.3
AUK06588.1\|2427278_2427530_-	DNA-binding protein	S4TND0	Salmonella_phage	1.9e-14	48.7
AUK06589.1\|2427602_2430074_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
AUK06590.1\|2430167_2430359_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AUK06591.1\|2430355_2430544_-	cell division inhibition protein DicB	NA	NA	NA	NA
AUK06592.1\|2430959_2431247_+	hypothetical protein	NA	NA	NA	NA
AUK08952.1\|2431215_2431581_-	hypothetical protein	NA	NA	NA	NA
AUK06593.1\|2431592_2431745_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.6e-07	53.2
AUK06594.1\|2431913_2432321_-	transcriptional regulator	I6PD69	Cronobacter_phage	7.2e-32	51.9
AUK06595.1\|2432401_2432629_+	transcriptional regulator	NA	NA	NA	NA
AUK06596.1\|2432612_2433134_+	hypothetical protein	NA	NA	NA	NA
AUK06597.1\|2433060_2434080_+	hypothetical protein	U5P0A0	Shigella_phage	3.6e-56	60.8
AUK06598.1\|2434120_2434522_+	DUF977 domain-containing protein	A0A0U2QQN3	Escherichia_phage	6.0e-63	92.5
AUK06599.1\|2435055_2436081_+	hypothetical protein	A0A1B0VBT5	Salmonella_phage	3.2e-28	28.2
AUK06600.1\|2436396_2436600_+	hypothetical protein	NA	NA	NA	NA
AUK06601.1\|2436758_2436971_+	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	3.9e-29	95.7
AUK06602.1\|2437187_2437439_+	hypothetical protein	NA	NA	NA	NA
AUK06603.1\|2437505_2437784_+	hypothetical protein	NA	NA	NA	NA
AUK06604.1\|2437785_2438835_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.3e-112	57.3
AUK06605.1\|2438848_2439601_+	antitermination protein	Q8SBE4	Shigella_phage	2.5e-131	95.2
AUK06606.1\|2440276_2440492_+	RNA chaperone/antiterminator CspA	A0A1W6JNX5	Morganella_phage	7.7e-25	76.5
AUK06607.1\|2441245_2441461_+\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.1e-31	94.4
AUK06608.1\|2441465_2441777_+	hypothetical protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
AUK06609.1\|2441773_2442307_+	lysozyme from lambdoid prophage Qin	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
AUK06610.1\|2442303_2442801_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
2442773:2442788	attR	NA	NA	NA	NA
AUK06611.1\|2443164_2443377_+	cold-shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
AUK06612.1\|2443387_2443576_+	cold-shock protein	NA	NA	NA	NA
AUK08953.1\|2443723_2443879_+	hypothetical protein	NA	NA	NA	NA
AUK06613.1\|2444374_2444785_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.2e-63	89.7
AUK06614.1\|2444985_2445192_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	6.7e-26	91.2
AUK06615.1\|2445745_2446240_+	DUF1441 domain-containing protein	A0A291AWV8	Escherichia_phage	8.4e-83	99.4
AUK06616.1\|2446239_2448342_+	DNA packaging protein	K7PH40	Enterobacteria_phage	0.0e+00	99.6
AUK06617.1\|2448338_2448551_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
AUK06618.1\|2448550_2450059_+\|portal	phage portal protein	A5LH29	Enterobacteria_phage	2.9e-288	99.6
AUK06619.1\|2450003_2452031_+	peptidase S14	A5LH30	Enterobacteria_phage	0.0e+00	99.7
AUK06620.1\|2452072_2452441_+	DUF2190 domain-containing protein	A5LH31	Enterobacteria_phage	9.7e-52	100.0
AUK06621.1\|2452433_2452709_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	7.2e-44	97.8
AUK06622.1\|2452720_2453299_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	6.1e-101	99.5
AUK08955.1\|2453295_2453697_+\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	8.3e-73	100.0
AUK06623.1\|2453708_2454452_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	7.8e-133	100.0
AUK08954.1\|2454512_2454899_+\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	1.6e-65	100.0
AUK06624.1\|2454907_2455237_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
AUK06625.1\|2455208_2458274_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	99.4
AUK06626.1\|2458273_2458603_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
AUK06627.1\|2458612_2459311_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.3e-134	99.6
AUK06628.1\|2459316_2460060_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.4e-150	98.8
AUK06629.1\|2459957_2460605_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.3e-112	97.7
AUK06630.1\|2460665_2464079_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.2
AUK06631.1\|2464148_2464748_+	Ail/Lom family protein	A0A0P0ZCF6	Stx2-converting_phage	1.1e-108	98.0
AUK06632.1\|2464812_2467773_+	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	1.1e-55	53.9
AUK06633.1\|2467772_2468375_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.4e-103	96.3
AUK06634.1\|2468445_2469036_-	DNA invertase	A0A219Y9V9	Aeromonas_phage	2.1e-24	35.9
AUK06635.1\|2469354_2469588_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	3.2e-32	87.0

DBSCAN-SWA_7

3244003 : 3299653

Enterobacteria_phage(55.38%)

integrase,portal,capsid,lysis,head,holin,tail,transposase,terminase

attL 3250670:3250686|attR 3307599:3307615

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK07341.1\|3244003_3244585_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.7e-101	93.2
AUK07342.1\|3244584_3247986_-	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	8.2e-12	38.2
AUK07343.1\|3248050_3248650_-	Ail/Lom family protein	A0A0P0ZCF6	Stx2-converting_phage	4.1e-108	97.5
AUK07344.1\|3248720_3252218_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	98.2
3250670:3250686	attL	NA	NA	NA	NA
AUK07345.1\|3252278_3252920_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	6.6e-96	86.0
AUK07346.1\|3252817_3253561_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.3e-147	96.8
AUK07347.1\|3253566_3254265_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	7.3e-133	99.1
AUK07348.1\|3254264_3254594_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
AUK07349.1\|3254590_3257152_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	89.4
AUK07350.1\|3257144_3257579_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	2.0e-64	99.2
AUK07351.1\|3257560_3257983_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.6e-69	95.0
AUK08992.1\|3257998_3258739_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	8.9e-129	96.7
AUK07352.1\|3258746_3259142_-\|tail	phage tail protein	A0A0K2FIF4	Enterobacteria_phage	5.0e-70	98.5
AUK07353.1\|3259138_3259717_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.9e-79	96.9
AUK07354.1\|3259728_3260082_-\|tail	phage tail protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
AUK07355.1\|3260093_3260489_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	8.2e-57	93.9
AUK07356.1\|3261475_3262639_+	DUF262 domain-containing protein	A0A0R6PJX3	Moraxella_phage	9.6e-21	28.9
AUK07357.1\|3262643_3263192_+	hypothetical protein	NA	NA	NA	NA
AUK07358.1\|3263255_3263450_-	hypothetical protein	NA	NA	NA	NA
AUK07359.1\|3263695_3264079_-	AlpA family phage regulatory protein	NA	NA	NA	NA
AUK07360.1\|3264090_3264432_-\|head	head decoration protein	NA	NA	NA	NA
AUK07361.1\|3264441_3265482_-\|capsid	capsid protein	C6ZCY2	Enterobacteria_phage	5.7e-65	42.1
AUK07362.1\|3265699_3266149_-	single-stranded DNA-binding protein	NA	NA	NA	NA
AUK07363.1\|3266160_3266403_-	hypothetical protein	NA	NA	NA	NA
AUK07364.1\|3266692_3268444_-	DNA primase	Q7M2A8	Enterobacteria_phage	2.2e-93	40.6
AUK07365.1\|3268440_3268740_-	DUF4222 domain-containing protein	NA	NA	NA	NA
AUK07366.1\|3268757_3268979_-	hypothetical protein	NA	NA	NA	NA
AUK07367.1\|3268979_3269171_-	hypothetical protein	A0A286S1P8	Klebsiella_phage	1.1e-11	59.3
AUK07368.1\|3269170_3269356_-	hypothetical protein	NA	NA	NA	NA
AUK07369.1\|3269348_3269960_-	hypothetical protein	NA	NA	NA	NA
AUK07370.1\|3270392_3270929_+	hypothetical protein	NA	NA	NA	NA
AUK07371.1\|3270998_3271226_-	hypothetical protein	NA	NA	NA	NA
AUK07372.1\|3271227_3272463_-\|integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.1e-99	44.9
AUK08993.1\|3272595_3272865_-\|capsid	capsid protein	A0A2I6TCE5	Escherichia_phage	5.3e-39	100.0
AUK07373.1\|3272926_3273259_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.5e-55	99.1
AUK07374.1\|3273268_3274588_-\|capsid	capsid assembly protein	A0A2I6TC87	Escherichia_phage	1.4e-233	98.9
AUK07375.1\|3274568_3276170_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-307	98.3
AUK07376.1\|3276166_3276373_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
AUK07377.1\|3276369_3278295_-\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.2
AUK07378.1\|3278269_3278815_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
AUK07379.1\|3279203_3279398_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	4.3e-27	96.9
AUK07380.1\|3279759_3280053_+	lipoprotein bor	K7PL54	Enterobacteria_phage	5.9e-44	90.7
AUK07381.1\|3280084_3280546_-\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	3.5e-75	98.7
AUK07382.1\|3280542_3281040_-	lysozyme	A0A1B5FP97	Escherichia_phage	7.9e-89	95.8
AUK07383.1\|3281039_3281255_-\|holin	holin	A5LH82	Enterobacteria_phage	2.6e-33	100.0
AUK07384.1\|3281827_3282925_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	6.7e-157	77.1
AUK07385.1\|3283114_3283498_-	antitermination protein Q	A0A088CD47	Shigella_phage	4.4e-55	83.3
AUK07386.1\|3283583_3283724_-	hypothetical protein	K7PHH3	Enterobacteria_phage	1.1e-08	69.8
AUK07387.1\|3283720_3284083_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	3.6e-59	94.8
AUK07388.1\|3284289_3284673_-	protein ninX	Q76H72	Enterobacteria_phage	6.3e-62	95.7
AUK07389.1\|3284633_3284810_-	NinE family protein	K7PHE6	Enterobacteria_phage	1.4e-27	98.3
AUK07390.1\|3284806_3285334_-	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
AUK07391.1\|3285330_3285789_-	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.3e-81	100.0
AUK07392.1\|3285844_3286135_-	protein ren	O48423	Enterobacteria_phage	9.6e-47	100.0
AUK07393.1\|3286131_3286833_-	Replication protein P	K7P6G2	Enterobacteria_phage	9.9e-130	100.0
AUK07394.1\|3286829_3287729_-	Replication protein O	A0A0K2FJ31	Enterobacteria_phage	1.1e-173	99.7
AUK07395.1\|3287761_3288055_-	hypothetical protein	A2SY75	Escherichia_phage	3.7e-46	100.0
AUK07396.1\|3288173_3288374_-	hypothetical protein	A4KWT7	Enterobacteria_phage	4.3e-30	100.0
AUK07397.1\|3288474_3289188_+	LexA family transcriptional repressor	A4KWV9	Enterobacteria_phage	3.5e-130	99.2
AUK08994.1\|3289354_3290173_+	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	3.3e-36	46.2
AUK08995.1\|3290654_3290978_+	antitermination protein	K7P718	Enterobacteria_phage	1.0e-52	100.0
AUK07398.1\|3290970_3291465_-	hypothetical protein	K7P861	Enterobacteria_phage	1.4e-85	99.4
AUK07399.1\|3291693_3292967_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3
AUK07400.1\|3293057_3293426_+	lambda prophage-derived protein ea10	M1FPD2	Enterobacteria_phage	7.6e-65	99.2
AUK07401.1\|3293505_3293775_+	host cell division inhibitory peptide Kil	M1FN78	Enterobacteria_phage	2.8e-40	95.5
AUK07402.1\|3293729_3294146_+	Host-nuclease inhibitor protein gam	C6ZCV5	Enterobacteria_phage	5.1e-73	98.6
AUK07403.1\|3294151_3294937_+	phage recombination protein Bet	A0A0N7KZJ3	Stx2-converting_phage	4.1e-148	99.2
AUK07404.1\|3294933_3295614_+	exonuclease	Q6H9Z0	Enterobacteria_phage	1.2e-132	100.0
AUK07405.1\|3295610_3295793_+	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	2.8e-28	96.7
AUK07406.1\|3295765_3295957_+	hypothetical protein	A0A0P0ZC67	Stx2-converting_phage	7.3e-27	100.0
AUK07407.1\|3295967_3296249_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	2.5e-47	100.0
AUK07408.1\|3296347_3296569_+	conjugal transfer protein TraR	A0A0N7C211	Escherichia_phage	6.4e-35	98.6
AUK07409.1\|3296565_3297114_+	hypothetical protein	K7PKY4	Enterobacterial_phage	7.7e-45	58.2
AUK07410.1\|3297244_3297943_+	DUF1311 domain-containing protein	J9Q6K3	Salmonella_phage	1.6e-100	81.0
AUK07411.1\|3298179_3298347_+	hypothetical protein	A5VWB7	Enterobacteria_phage	2.9e-27	98.2
AUK07412.1\|3298386_3298605_+	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
AUK07413.1\|3298582_3299653_+\|integrase	integrase	K7P6P6	Enterobacteria_phage	1.5e-201	99.7
3307599:3307615	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4638440 : 4674633

Escherichia_phage(42.22%)

integrase,portal,capsid,lysis,holin,head,plate,tail,terminase

attL 4638283:4638329|attR 4671845:4671891

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4638283:4638329	attL	NA	NA	NA	NA
AUK08600.1\|4638440_4638695_-	transcriptional regulator	A0A0F7LDQ9	Escherichia_phage	6.1e-45	100.0
AUK08601.1\|4638740_4639904_-	hypothetical protein	Q7Y4C6	Escherichia_virus	6.3e-206	97.9
AUK08602.1\|4639903_4640383_-\|tail	phage tail protein	Q7Y4C7	Escherichia_virus	1.1e-84	99.4
AUK08603.1\|4640397_4642845_-\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	98.8
AUK09056.1\|4642837_4642957_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	4.0e-15	97.4
AUK08604.1\|4642989_4643265_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
AUK08605.1\|4643321_4643840_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
AUK08606.1\|4643852_4645043_-\|tail	phage tail protein	A0A0F7LBW9	Escherichia_phage	1.4e-224	99.5
AUK08607.1\|4645362_4646262_-	hypothetical protein	Q7Y4D2	Escherichia_virus	2.0e-167	99.3
AUK08608.1\|4646477_4647005_-\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	5.1e-86	88.6
AUK08609.1\|4647006_4649028_-\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	9.2e-261	64.6
AUK08610.1\|4649038_4649569_-\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	4.3e-101	98.9
AUK08611.1\|4649561_4650470_-\|plate	baseplate assembly protein	A0A0F7LCJ3	Escherichia_phage	5.7e-162	99.3
AUK08612.1\|4650474_4650822_-\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	3.2e-57	98.3
AUK08613.1\|4650818_4651454_-\|plate	baseplate assembly protein	U5N3F0	Enterobacteria_phage	3.8e-112	98.1
AUK08614.1\|4651537_4652323_+	hypothetical protein	NA	NA	NA	NA
AUK08615.1\|4652394_4652847_-	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	5.3e-76	98.7
AUK08616.1\|4652839_4653307_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	3.0e-82	99.4
AUK08617.1\|4653269_4653443_-\|lysis	phage lysis protein	Q7Y4E1	Escherichia_virus	1.3e-22	91.2
AUK08618.1\|4653414_4653840_-	protein lysB	Q858W0	Yersinia_virus	8.0e-66	97.2
AUK08619.1\|4653827_4654253_-	protein lysA	A0A0F7LBP4	Escherichia_phage	1.4e-57	94.3
AUK08620.1\|4654267_4654765_-	lysozyme	A0A0F7LBS0	Escherichia_phage	6.9e-93	99.4
AUK08621.1\|4654764_4655046_-\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
AUK08622.1\|4655049_4655253_-\|tail	phage tail protein	A0A0F7LCN2	Escherichia_phage	3.0e-31	100.0
AUK08623.1\|4655252_4655762_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
AUK08624.1\|4655861_4656605_-\|terminase	terminase	Q858W5	Yersinia_virus	4.9e-127	99.6
AUK08625.1\|4656608_4657682_-\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	1.5e-201	99.4
AUK08626.1\|4657740_4658595_-\|capsid	capsid scaffolding protein	Q94MB7	Escherichia_virus	1.7e-139	89.4
AUK08627.1\|4658768_4660541_+	oxidoreductase	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
AUK08628.1\|4660540_4661575_+\|portal	phage portal protein	M1SV64	Escherichia_phage	4.2e-201	99.7
AUK08629.1\|4661990_4663064_+	hypothetical protein	Q7Y4B3	Escherichia_virus	1.2e-203	100.0
AUK08630.1\|4663056_4664094_+	hypothetical protein	Q7Y4B4	Escherichia_virus	4.6e-200	100.0
AUK08631.1\|4664090_4665029_-	DNA cytosine methyltransferase	Q7Y4B5	Escherichia_virus	3.1e-187	100.0
AUK08632.1\|4665271_4665478_-	hypothetical protein	Q2P9X3	Enterobacteria_phage	2.4e-31	97.0
AUK08633.1\|4665477_4665930_-	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	1.0e-79	96.7
AUK08634.1\|4665929_4668215_-	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	97.2
AUK08635.1\|4668204_4668480_-	hypothetical protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
AUK08636.1\|4668476_4668701_-	hypothetical protein	A0A0F7LDG9	Escherichia_phage	5.0e-35	98.6
AUK08637.1\|4668700_4669003_-	hypothetical protein	A0A0F7LDT6	Escherichia_phage	2.2e-46	99.0
AUK08638.1\|4669002_4669227_-	DUF2732 domain-containing protein	S4TP68	Salmonella_phage	4.7e-33	100.0
AUK08639.1\|4669290_4669791_-	replication protein B	A0A0F7LBQ6	Escherichia_phage	4.5e-92	100.0
AUK08640.1\|4669960_4670233_-	hypothetical protein	Q1JS44	Enterobacteria_phage	1.5e-46	100.0
AUK08641.1\|4670385_4670679_+	transcriptional regulator	Q1JS45	Enterobacteria_phage	1.0e-48	100.0
AUK08642.1\|4670748_4671729_+\|integrase	integrase	U5N0A8	Enterobacteria_phage	2.3e-185	99.7
AUK09057.1\|4671914_4672415_-	periplasmic protein CpxP	NA	NA	NA	NA
4671845:4671891	attR	NA	NA	NA	NA
AUK08643.1\|4672564_4673263_+	DNA-binding response regulator	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
AUK08644.1\|4673259_4674633_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	3.8e-16	25.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP024140

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17717 : 55466

Escherichia_phage(40.0%)

integrase,transposase

attL 39803:39862|attR 51404:52225

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK09156.1\|17717_18509_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	2.7e-51	90.2
AUK09157.1\|18505_19195_-	hypothetical protein	NA	NA	NA	NA
AUK09158.1\|19238_19589_-	hypothetical protein	NA	NA	NA	NA
AUK09159.1\|20270_21266_+	nucleotidyltransferase	NA	NA	NA	NA
AUK09160.1\|21269_22202_+	hypothetical protein	NA	NA	NA	NA
AUK09161.1\|22499_23588_+	transcriptional regulator	NA	NA	NA	NA
AUK09162.1\|23589_24459_+	hypothetical protein	NA	NA	NA	NA
AUK09163.1\|24515_26081_-	AAA family ATPase	NA	NA	NA	NA
AUK09305.1\|26273_26411_+	toxin-antitoxin system, antitoxin component, AbrB family protein	NA	NA	NA	NA
AUK09164.1\|26388_26619_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AUK09165.1\|26615_27032_+	PIN domain-containing protein	NA	NA	NA	NA
AUK09166.1\|27193_29332_-	AAA family ATPase	NA	NA	NA	NA
AUK09167.1\|29685_29943_+	hypothetical protein	NA	NA	NA	NA
AUK09168.1\|29942_30533_+	hypothetical protein	NA	NA	NA	NA
AUK09169.1\|30795_32352_+	chromosome segregation protein SMC	NA	NA	NA	NA
AUK09170.1\|32541_33159_+	proQ/FINO family protein	NA	NA	NA	NA
AUK09171.1\|33451_34531_-	permease	NA	NA	NA	NA
AUK09172.1\|34635_34959_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AUK09173.1\|35119_35602_+	hypothetical protein	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-40	68.5
AUK09174.1\|35492_36209_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.1e-139	99.6
AUK09175.1\|37656_38361_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK09176.1\|38900_39716_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
39803:39862	attL	NA	NA	NA	NA
AUK09177.1\|39866_40571_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK09178.1\|40831_41695_+	short-chain dehydrogenase/reductase	W8CYX9	Bacillus_phage	2.5e-05	31.0
AUK09179.1\|41732_41978_+	hypothetical protein	NA	NA	NA	NA
AUK09306.1\|42128_42356_+	hypothetical protein	NA	NA	NA	NA
AUK09180.1\|42446_43238_+	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	1.2e-14	26.5
AUK09181.1\|44092_44278_-	hypothetical protein	NA	NA	NA	NA
AUK09182.1\|44928_45633_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK09183.1\|45702_46185_-	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	6.6e-16	28.9
AUK09184.1\|46331_47231_+\|integrase	integrase/recombinase	A0A1P8DJJ6	Virus_Rctr41k	9.0e-59	42.8
AUK09185.1\|47277_47982_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
AUK09186.1\|47872_48466_-	resolvase	A0A1B0V7I5	Salmonella_phage	3.3e-33	92.7
AUK09187.1\|48591_49206_-	DUF3330 domain-containing protein	NA	NA	NA	NA
AUK09188.1\|49144_50158_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AUK09307.1\|50324_51167_+	putative esterase EstX	NA	NA	NA	NA
AUK09189.1\|51467_52172_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK09190.1\|52205_52697_-	hypothetical protein	NA	NA	NA	NA
51404:52225	attR	NA	NA	NA	NA
AUK09191.1\|52803_53541_+	resolvase	NA	NA	NA	NA
AUK09192.1\|53537_53762_+	hypothetical protein	NA	NA	NA	NA
AUK09193.1\|53972_55466_+\|transposase	IS91 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

65195 : 113911

Stx2-converting_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK09204.1\|65195_65900_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK09205.1\|65936_67064_-	DUF3883 domain-containing protein	NA	NA	NA	NA
AUK09206.1\|67114_67360_-	hypothetical protein	NA	NA	NA	NA
AUK09207.1\|67365_67557_+	hypothetical protein	NA	NA	NA	NA
AUK09208.1\|68038_68581_-	tunicamycin resistance protein	NA	NA	NA	NA
AUK09209.1\|68593_69454_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
AUK09210.1\|70550_71255_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AUK09211.1\|71313_74313_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	100.0
AUK09212.1\|74507_74942_+	mercuric resistance operon regulatory protein	NA	NA	NA	NA
AUK09213.1\|75337_75802_-	mRNA interferase PemK	NA	NA	NA	NA
AUK09214.1\|76021_76675_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AUK09215.1\|77396_77822_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
AUK09216.1\|77818_78169_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	1.2e-40	66.4
AUK09217.1\|78199_79792_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.9e-181	63.4
AUK09218.1\|79887_80235_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	4.8e-61	99.1
AUK09309.1\|80231_80612_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
AUK09219.1\|80773_80947_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AUK09220.1\|81388_82246_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
AUK09221.1\|82238_82733_-	hypothetical protein	NA	NA	NA	NA
AUK09310.1\|82713_82788_-	positive regulator of RepFIC repA1 expression	NA	NA	NA	NA
AUK09222.1\|82866_82998_+	replication protein RepA	NA	NA	NA	NA
AUK09223.1\|83019_83277_-	transcriptional regulator	NA	NA	NA	NA
AUK09311.1\|83560_83710_-	Hok/Gef family protein	NA	NA	NA	NA
AUK09224.1\|83765_83975_+	hypothetical protein	NA	NA	NA	NA
AUK09225.1\|84390_84603_-	hypothetical protein	NA	NA	NA	NA
AUK09226.1\|84738_85299_-	conjugal transfer protein	NA	NA	NA	NA
AUK09227.1\|85401_86262_-	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	1.3e-09	23.5
AUK09228.1\|86320_87067_-	conjugal transfer pilus acetylase TraX	A0A077JBM8	Xanthomonas_phage	8.7e-07	29.7
AUK09229.1\|87086_92357_-	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
AUK09230.1\|92435_92666_+	antitoxin	NA	NA	NA	NA
AUK09231.1\|92665_93064_+	PIN domain-containing protein	NA	NA	NA	NA
AUK09232.1\|93072_95226_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
AUK09312.1\|95478_96213_-	complement resistance protein TraT	NA	NA	NA	NA
AUK09233.1\|96241_96739_-	entry exclusion protein	NA	NA	NA	NA
AUK09234.1\|96754_99577_-	conjugal transfer protein TraG	NA	NA	NA	NA
AUK09235.1\|99573_100950_-	conjugal transfer protein TraH	NA	NA	NA	NA
AUK09236.1\|100946_101360_-	conjugal transfer protein TrbF	NA	NA	NA	NA
AUK09237.1\|101313_101655_-	protein TrbJ	NA	NA	NA	NA
AUK09238.1\|101584_102130_-	protein TrbB	NA	NA	NA	NA
AUK09239.1\|102116_102401_-	protein TraQ	NA	NA	NA	NA
AUK09240.1\|102481_102796_+	toxin ArtA	NA	NA	NA	NA
AUK09241.1\|102797_103145_-	protein TrbA	NA	NA	NA	NA
AUK09242.1\|103160_103934_-	type-F conjugative transfer system pilin assembly protein TraF	NA	NA	NA	NA
AUK09243.1\|103896_104157_-	protein TrbE	NA	NA	NA	NA
AUK09244.1\|104180_105989_-	type-F conjugative transfer system mating-pair stabilization protein TraN	NA	NA	NA	NA
AUK09245.1\|105985_106624_-	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
AUK09246.1\|106632_107625_-	protein TraU	NA	NA	NA	NA
AUK09247.1\|107621_108254_-	protein TraW	NA	NA	NA	NA
AUK09248.1\|108250_108637_-	type-F conjugative transfer system protein TrbI	NA	NA	NA	NA
AUK09249.1\|108633_111261_-	conjugal transfer protein TraC	NA	NA	NA	NA
AUK09250.1\|111420_111642_-	protein TraR	A2I309	Vibrio_virus	3.3e-07	40.8
AUK09251.1\|111776_112292_-	type IV conjugative transfer system protein TraV	NA	NA	NA	NA
AUK09252.1\|112288_112540_-	protein TrbG	NA	NA	NA	NA
AUK09253.1\|112551_112701_-	conjugal transfer protein TrbD	NA	NA	NA	NA
AUK09254.1\|112697_113911_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.3e-100	57.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP024138

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP024140

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection