CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP024145	Escherichia coli strain 14EC029 plasmid p14EC029d, complete sequence	0 crisprs	RT,DEDDh	0	0
CP024142	Escherichia coli strain 14EC029 plasmid p14EC029a, complete sequence	0 crisprs	c2c9_V-U4	0	1
CP024146	Escherichia coli strain 14EC029 plasmid p14EC029e, complete sequence	0 crisprs	NA	0	1
CP024141	Escherichia coli strain 14EC029 chromosome, complete genome	12 crisprs	cas3,RT,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	14	11
CP024143	Escherichia coli strain 14EC029 plasmid p14EC029b, complete sequence	0 crisprs	csa3	0	1
CP024144	Escherichia coli strain 14EC029 plasmid p14EC029c, complete sequence	0 crisprs	csa3	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP024141_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024141_1

661154-661271

Orphan

Consensus_repeat	Method
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024141_1

>merge|CP024141|1|661154-661271|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGATGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

>CP024141|1|1|661154-661271|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	GTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGA
TGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

Protein	Signature genes	Signature genes Name	Protein_function
CP024141.1\|AUJ99550.1\|656824_658189_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000
CP024141.1\|AUJ99549.1\|656363_656753_+\|reactive-intermediate/imine-deaminase	unknown	unknown	gnl\|CDD\|105214
CP024141.1\|AUJ99561.1\|666463_666868_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227681
CP024141.1\|AUJ99558.1\|664540_665527_-\|glutathione-dependent-reductase	unknown	unknown	gnl\|CDD\|223512
CP024141.1\|AUJ99546.1\|651456_652788_+\|threonine/serine-transporter-TdcC	unknown	unknown	gnl\|CDD\|184191
CP024141.1\|AUJ99559.1\|665596_666079_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
CP024141.1\|AUJ99562.1\|666870_667176_-\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
CP024141.1\|AUJ99547.1\|652813_654022_+\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484
CP024141.1\|AUJ99553.1\|661344_661509_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUJ99544.1\|649408_650347_+\|transcriptional-regulator-TdcA	unknown	unknown	gnl\|CDD\|182391
CP024141.1\|AUJ99560.1\|666174_666474_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372871
CP024141.1\|AUJ99543.1\|648875_649220_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|236909
CP024141.1\|AUJ99545.1\|650445_651435_+\|serine/threonine-dehydratase	unknown	unknown	gnl\|CDD\|236317
CP024141.1\|AUJ99551.1\|658463_659795_+\|transporter	unknown	unknown	gnl\|CDD\|273283
CP024141.1\|AUJ99554.1\|661531_662233_-\|pirin-like-protein-YhaK	unknown	unknown	gnl\|CDD\|224655
CP024141.1\|AUJ99555.1\|662337_663234_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
CP024141.1\|AUJ99552.1\|659822_661133_+\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
CP024141.1\|AUJ99548.1\|654055_656350_+\|PFL-like-enzyme-TdcE	unknown	unknown	gnl\|CDD\|153087
CP024141.1\|AUJ99557.1\|663882_664248_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
CP024141.1\|AUJ99556.1\|663284_663641_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694

Protein	Function_ID	Function_description	E-value
CP024141.1\|AUJ99550.1\|656824_658189_+\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0
CP024141.1\|AUJ99549.1\|656363_656753_+\|reactive-intermediate/imine-deaminase	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	2.43767e-83
CP024141.1\|AUJ99558.1\|664540_665527_-\|glutathione-dependent-reductase	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
CP024141.1\|AUJ99546.1\|651456_652788_+\|threonine/serine-transporter-TdcC	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0
CP024141.1\|AUJ99559.1\|665596_666079_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.8408e-29
CP024141.1\|AUJ99562.1\|666870_667176_-\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.46625e-41
CP024141.1\|AUJ99547.1\|652813_654022_+\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
CP024141.1\|AUJ99551.1\|658463_659795_+\|transporter	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	2.53913e-167
CP024141.1\|AUJ99544.1\|649408_650347_+\|transcriptional-regulator-TdcA	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
CP024141.1\|AUJ99560.1\|666174_666474_-\|hypothetical-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	6.11451e-20
CP024141.1\|AUJ99543.1\|648875_649220_-\|transcriptional-regulator	gnl\|CDD\|236909	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional.	8.0507e-67
CP024141.1\|AUJ99545.1\|650445_651435_+\|serine/threonine-dehydratase	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
CP024141.1\|AUJ99561.1\|666463_666868_-\|hypothetical-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	2.73939e-60
CP024141.1\|AUJ99554.1\|661531_662233_-\|pirin-like-protein-YhaK	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.02982e-67
CP024141.1\|AUJ99555.1\|662337_663234_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.2986e-51
CP024141.1\|AUJ99552.1\|659822_661133_+\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0
CP024141.1\|AUJ99548.1\|654055_656350_+\|PFL-like-enzyme-TdcE	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
CP024141.1\|AUJ99557.1\|663882_664248_-\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	3.68376e-42
CP024141.1\|AUJ99556.1\|663284_663641_-\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	1.64644e-35

>CP024141.1|AUJ99552.1|659822_661133_+|serine-dehydratase-subunit-alpha-family-protein
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
>CP024141.1|AUJ99551.1|658463_659795_+|transporter
MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS
>CP024141.1|AUJ99550.1|656824_658189_+|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
>CP024141.1|AUJ99549.1|656363_656753_+|reactive-intermediate/imine-deaminase
MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRSA
>CP024141.1|AUJ99548.1|654055_656350_+|PFL-like-enzyme-TdcE
MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL
>CP024141.1|AUJ99547.1|652813_654022_+|propionate-kinase
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGVVIDTEMNNRSNSFGERIVSSENARVICAVIPTNEEKMIALDAIHLGKVNAPAEFA
>CP024141.1|AUJ99546.1|651456_652788_+|threonine/serine-transporter-TdcC
MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLVLKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF
>CP024141.1|AUJ99545.1|650445_651435_+|serine/threonine-dehydratase
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA
>CP024141.1|AUJ99544.1|649408_650347_+|transcriptional-regulator-TdcA
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESECVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG
>CP024141.1|AUJ99543.1|648875_649220_-|transcriptional-regulator
MTGITIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLMSKFSNFIINKPFSVINNAACHIFSRYLLENKHLFYQYFKISNTCIDHLEQLINVNFFSSDRTSFCECNRFP
>CP024141.1|AUJ99553.1|661344_661509_-|hypothetical-protein
MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA
>CP024141.1|AUJ99554.1|661531_662233_-|pirin-like-protein-YhaK
MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVWLHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLPV
>CP024141.1|AUJ99555.1|662337_663234_+|LysR-family-transcriptional-regulator
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFSGK
>CP024141.1|AUJ99556.1|663284_663641_-|DUF805-domain-containing-protein
MQWYLAVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLEFPFLSLIYLAATIIPVIALCVRRLHDTDRSGAWALLYLVPIIGWLVLFVFACLEGNSGSNRYGNDPKFGSN
>CP024141.1|AUJ99557.1|663882_664248_-|DUF805-domain-containing-protein
MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLEP
>CP024141.1|AUJ99558.1|664540_665527_-|glutathione-dependent-reductase
MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQNEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDTLGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQEAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG
>CP024141.1|AUJ99559.1|665596_666079_-|DoxX-family-protein
MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVARILMPILFITAGWGKITAYSGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW
>CP024141.1|AUJ99560.1|666174_666474_-|hypothetical-protein
MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWNMLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG
>CP024141.1|AUJ99561.1|666463_666868_-|hypothetical-protein
MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ
>CP024141.1|AUJ99562.1|666870_667176_-|DUF883-domain-containing-protein
MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR

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Crispr_ID: CP024141_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024141_2

1053284-1053800

Orphan

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

8 spacers

The CRISPR arrays of CP024141_2

>merge|CP024141|2|1053284-1053800|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGTCCACGCTGTAACGGCCATCATTAAGTTTAGTGAGTTCCCCGCGCCAGCGGGGATAAACCGGCTGATGGTCTGGGAGTGTCCATCGGGCAACTGAGTTCCCCGCGCCAGCGGGGATAAACCGGAAGTAGGCCTGACAGTGATTGAACGCATACTGAGTTCCCCGCGCCAGCGGGGATAAACCGAGTTGGGGCGGCGCAATAACGAGACGATACGCGAGTTCCCCGCGCCAGCGGGGATAAACCGGGGAGTGGCACTTCTGGGGTAGCGGCGGCCCTGAGTTCCCCGCGCCAGCGGGGATAAACCGTCAACGCGCTCAGACGTTGCGTGAGTGAACCAGAGTTCCCCGCGCCAGCGGGGATAAACCGAAATATCCAGGGCTGGGCTGGAGGCAGACGGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCCCGGAATGCATTCTGAAGGTTTGCTGTATATGAGTTCCCCGCGCCAGCGGGGATAAACCA

>CP024141|2|1|1053284-1053800|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACGCTGTAACGGCCATCATTAAGTTTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGGTCTGGGAGTGTCCATCGGGCAACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGTAGGCCTGACAGTGATTGAACGCATACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGGGGCGGCGCAATAACGAGACGATACGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>CP024141|2|2|1053284-1053800|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACGCTGTAACGGCCATCATTAAGTTTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGGTCTGGGAGTGTCCATCGGGCAACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGTAGGCCTGACAGTGATTGAACGCATACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGGGGCGGCGCAATAACGAGACGATACGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>CP024141|2|1|1053284-1053800|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCCACGCTGTAACGGCCATCATTAAGTTTAGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCTGATGGTCTGGGAGTGTCCATCGGGCAACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAGTAGGCCTGACAGTGATTGAACGCATACT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTGGGGCGGCGCAATAACGAGACGATACGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGCGCTCAGACGTTGCGTGAGTGAACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AAATATCCAGGGCTGGGCTGGAGGCAGACGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCCGGAATGCATTCTGAAGGTTTGCTGTATAT
GAGTTCCCCGCGCCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
CP024141.1\|AUJ99920.1\|1058393_1059848_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
CP024141.1\|AUJ99908.1\|1044039_1046274_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP024141.1\|AUJ99918.1\|1055942_1057220_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
CP024141.1\|AUJ99914.1\|1051107_1051980_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224429
CP024141.1\|AUJ99907.1\|1042690_1043992_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP024141.1\|AUJ99917.1\|1054437_1055916_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
CP024141.1\|AUJ99924.1\|1063040_1063616_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
CP024141.1\|AUJ99911.1\|1047005_1047797_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP024141.1\|AUJ99909.1\|1046351_1046600_+\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
CP024141.1\|AUJ99923.1\|1062032_1062893_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
CP024141.1\|AUJ99910.1\|1046599_1046935_+\|mRNA-interferase-MazF	unknown	unknown	gnl\|CDD\|182138
CP024141.1\|AUJ99919.1\|1057538_1058324_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|187605
CP024141.1\|AUJ99915.1\|1051993_1052134_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUJ99916.1\|1052272_1052944_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP024141.1\|AUJ99921.1\|1059941_1061279_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
CP024141.1\|AUJ99926.1\|1063883_1065155_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
CP024141.1\|AUJ99913.1\|1049749_1051048_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP024141.1\|AUJ99912.1\|1048024_1049662_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP024141.1\|AUJ99925.1\|1063632_1063893_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
CP024141.1\|AUJ99922.1\|1061256_1062036_+\|electron-transfer-flavoprotein	unknown	unknown	gnl\|CDD\|224997

Protein	Function_ID	Function_description	E-value
CP024141.1\|AUJ99920.1\|1058393_1059848_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82
CP024141.1\|AUJ99908.1\|1044039_1046274_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP024141.1\|AUJ99918.1\|1055942_1057220_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.95414e-29
CP024141.1\|AUJ99914.1\|1051107_1051980_-\|hypothetical-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	5.56011e-100
CP024141.1\|AUJ99907.1\|1042690_1043992_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP024141.1\|AUJ99917.1\|1054437_1055916_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	9.76816e-108
CP024141.1\|AUJ99924.1\|1063040_1063616_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
CP024141.1\|AUJ99911.1\|1047005_1047797_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
CP024141.1\|AUJ99909.1\|1046351_1046600_+\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
CP024141.1\|AUJ99923.1\|1062032_1062893_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	6.38228e-89
CP024141.1\|AUJ99910.1\|1046599_1046935_+\|mRNA-interferase-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
CP024141.1\|AUJ99919.1\|1057538_1058324_+\|oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.46984e-138
CP024141.1\|AUJ99916.1\|1052272_1052944_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.23739e-155
CP024141.1\|AUJ99921.1\|1059941_1061279_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.95298e-50
CP024141.1\|AUJ99926.1\|1063883_1065155_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.82789e-125
CP024141.1\|AUJ99913.1\|1049749_1051048_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP024141.1\|AUJ99912.1\|1048024_1049662_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP024141.1\|AUJ99925.1\|1063632_1063893_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.6328e-41
CP024141.1\|AUJ99922.1\|1061256_1062036_+\|electron-transfer-flavoprotein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.46503e-62

>CP024141.1|AUJ99916.1|1052272_1052944_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVISRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP024141.1|AUJ99915.1|1051993_1052134_-|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>CP024141.1|AUJ99914.1|1051107_1051980_-|hypothetical-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIKVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>CP024141.1|AUJ99913.1|1049749_1051048_+|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP024141.1|AUJ99912.1|1048024_1049662_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP024141.1|AUJ99911.1|1047005_1047797_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP024141.1|AUJ99910.1|1046599_1046935_+|mRNA-interferase-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>CP024141.1|AUJ99909.1|1046351_1046600_+|antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>CP024141.1|AUJ99908.1|1044039_1046274_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>CP024141.1|AUJ99907.1|1042690_1043992_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>CP024141.1|AUJ99917.1|1054437_1055916_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNYFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>CP024141.1|AUJ99918.1|1055942_1057220_-|MFS-transporter
MQHNSYRRWITLAIISFSGDVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>CP024141.1|AUJ99919.1|1057538_1058324_+|oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMELAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAASCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>CP024141.1|AUJ99920.1|1058393_1059848_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>CP024141.1|AUJ99921.1|1059941_1061279_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFKSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>CP024141.1|AUJ99922.1|1061256_1062036_+|electron-transfer-flavoprotein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWRDYLRQRMQP
>CP024141.1|AUJ99923.1|1062032_1062893_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLIIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPKVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>CP024141.1|AUJ99924.1|1063040_1063616_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>CP024141.1|AUJ99925.1|1063632_1063893_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>CP024141.1|AUJ99926.1|1063883_1065155_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERCITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: CP024141_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024141_3

1080848-1081241

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	CRT
GTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP024141_3

>merge|CP024141|3|1080848-1081241|PILER-CR,CRT,CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGACGGACAAAATATATATTGATTTGCGAATTATGTGTTCCCCGCGCCAGCGGGGATAAACCGGGATCTAACGCGCTGTAAAAATTCCGTGCTTTGTGTTCCCCGCGCCAGCGGGGATAAACCATGCGGATTACCGGCAAAACATGGGAGCAAACCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCGTTTGGTCCACCAAATGTTTGATGCTTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCAGGGTGTGATTCCGCATACCAAGCAGTAAGAGTTCCCCGCGCCAGCGGGGATAAACCGGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACC

>CP024141|3|2|1080848-1081181|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGACAAAATATATATTGATTTGCGAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTAACGCGCTGTAAAAATTCCGTGCTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TGCGGATTACCGGCAAAACATGGGAGCAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGTTTGGTCCACCAAATGTTTGATGCTTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCAGGGTGTGATTCCGCATACCAAGCAGTAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG

>CP024141|3|2|1080848-1081241|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGGACAAAATATATATTGATTTGCGAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGATCTAACGCGCTGTAAAAATTCCGTGCTTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	ATGCGGATTACCGGCAAAACATGGGAGCAAACC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCCGTTTGGTCCACCAAATGTTTGATGCTTCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTCAGGGTGTGATTCCGCATACCAAGCAGTAA
GAGTTCCCCGCGCCAGCGGGGATAAACC	GGGCGCACTGGATGCGATGATGGATATCACTTA
GAATTCCCCGCCCCTGCGGTAGAACACC

>CP024141|3|3|1080850-1081181|CRISPRCasFinder
GTTCCCCGCGCCAGCGGGGATAAACCG	ACGGACAAAATATATATTGATTTGCGAATTATGT
GTTCCCCGCGCCAGCGGGGATAAACCG	GGATCTAACGCGCTGTAAAAATTCCGTGCTTTGT
GTTCCCCGCGCCAGCGGGGATAAACCA	TGCGGATTACCGGCAAAACATGGGAGCAAACCGT
GTTCCCCGCGCCAGCGGGGATAAACCG	TCCGTTTGGTCCACCAAATGTTTGATGCTTCAGT
GTTCCCCGCGCCAGCGGGGATAAACCG	TTCAGGGTGTGATTCCGCATACCAAGCAGTAAGA
GTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP024141.1\|AUJ99931.1\|1070497_1070650_+\|Hok/Gef-family-protein	unknown	unknown	gnl\|CDD\|366840
CP024141.1\|AUJ99946.1\|1086060_1086372_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP024141.1\|AUJ99944.1\|1084888_1085494_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP024141.1\|AUJ99939.1\|1079537_1080461_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP024141.1\|AUJ99937.1\|1078162_1078909_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP024141.1\|AUJ99938.1\|1078890_1079541_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP024141.1\|AUJ99934.1\|1074989_1076552_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP024141.1\|AUJ99936.1\|1077096_1078152_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
CP024141.1\|AUJ99935.1\|1076548_1077085_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP024141.1\|AUJ99943.1\|1083461_1084889_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP024141.1\|AUJ99941.1\|1081262_1082300_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP024141.1\|AUJ99950.1\|1088606_1089368_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP024141.1\|AUJ99933.1\|1072192_1074892_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP024141.1\|AUJ99940.1\|1080457_1080751_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP024141.1\|AUJ99945.1\|1085543_1085867_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP024141.1\|AUJ99942.1\|1082551_1083460_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP024141.1\|AUJ99932.1\|1070726_1071839_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
CP024141.1\|AUJ99949.1\|1087576_1088626_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP024141.1\|AUJ99947.1\|1086390_1087101_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP024141.1\|AUJ99948.1\|1087100_1087580_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851

Protein	Function_ID	Function_description	E-value
CP024141.1\|AUJ99931.1\|1070497_1070650_+\|Hok/Gef-family-protein	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
CP024141.1\|AUJ99946.1\|1086060_1086372_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
CP024141.1\|AUJ99944.1\|1084888_1085494_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
CP024141.1\|AUJ99939.1\|1079537_1080461_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.67486e-158
CP024141.1\|AUJ99937.1\|1078162_1078909_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.83917e-49
CP024141.1\|AUJ99938.1\|1078890_1079541_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.0289e-91
CP024141.1\|AUJ99934.1\|1074989_1076552_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP024141.1\|AUJ99936.1\|1077096_1078152_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.21697e-155
CP024141.1\|AUJ99935.1\|1076548_1077085_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.12087e-29
CP024141.1\|AUJ99943.1\|1083461_1084889_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP024141.1\|AUJ99941.1\|1081262_1082300_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP024141.1\|AUJ99950.1\|1088606_1089368_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
CP024141.1\|AUJ99933.1\|1072192_1074892_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.70435e-176
CP024141.1\|AUJ99940.1\|1080457_1080751_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
CP024141.1\|AUJ99945.1\|1085543_1085867_+\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP024141.1\|AUJ99942.1\|1082551_1083460_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP024141.1\|AUJ99932.1\|1070726_1071839_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	3.16058e-15
CP024141.1\|AUJ99949.1\|1087576_1088626_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP024141.1\|AUJ99947.1\|1086390_1087101_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
CP024141.1\|AUJ99948.1\|1087100_1087580_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104

>CP024141.1|AUJ99940.1|1080457_1080751_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>CP024141.1|AUJ99939.1|1079537_1080461_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>CP024141.1|AUJ99938.1|1078890_1079541_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELRTGQQLCFNLRANPTICKSGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>CP024141.1|AUJ99937.1|1078162_1078909_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>CP024141.1|AUJ99936.1|1077096_1078152_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWAMAEKGTEQPRSLAAAFYEPINGTRQLEVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>CP024141.1|AUJ99935.1|1076548_1077085_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>CP024141.1|AUJ99934.1|1074989_1076552_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLEVEKLREALLSLEHAFQFGPDSPSFMQDFEALTGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEYLCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKMWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRFVRQIEEGQDADELLSKWNKEIWLFARQDFDERVFTNPYEPVNLERIMTARKKYFTTSAEKQSAKAAREKKQEAAE
>CP024141.1|AUJ99933.1|1072192_1074892_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKEGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLSPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLAIKALFPRIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAQAMDIKHYWQKALVQAQNALTVFPPKAETAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGAEGQQEAPLLGKDDYPWLTHVTKTDVHSHRVATRKEVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDGSQRAGKVLICTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRARAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCIEQRQDPEMANVILVTDDESCGYSAMEGLTGKVG
>CP024141.1|AUJ99932.1|1070726_1071839_+|IS4-family-transposase
MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN
>CP024141.1|AUJ99931.1|1070497_1070650_+|Hok/Gef-family-protein
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>CP024141.1|AUJ99941.1|1081262_1082300_-|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>CP024141.1|AUJ99942.1|1082551_1083460_+|sulfate-adenylyltransferase-subunit-2
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP024141.1|AUJ99943.1|1083461_1084889_+|sulfate-adenylyltransferase
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEKTFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMAWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFINRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>CP024141.1|AUJ99944.1|1084888_1085494_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP024141.1|AUJ99945.1|1085543_1085867_+|hypothetical-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP024141.1|AUJ99946.1|1086060_1086372_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP024141.1|AUJ99947.1|1086390_1087101_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP024141.1|AUJ99948.1|1087100_1087580_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP024141.1|AUJ99949.1|1087576_1088626_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP024141.1|AUJ99950.1|1088606_1089368_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: CP024141_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024141_4

1629791-1629932

Orphan

Consensus_repeat	Method
CGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024141_4

>merge|CP024141|4|1629791-1629932|CRISPRCasFinder
CGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>CP024141|4|4|1629791-1629932|CRISPRCasFinder
CGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGG
CGCGTCTTATCAGGCCTACAAATCCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
CP024141.1\|AUK00455.1\|1627207_1627414_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182050
CP024141.1\|AUK00449.1\|1619863_1621123_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
CP024141.1\|AUK00465.1\|1647304_1648954_+\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
CP024141.1\|AUK00452.1\|1623013_1624372_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|236889
CP024141.1\|AUK00467.1\|1649808_1650993_-\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
CP024141.1\|AUK00454.1\|1625671_1626742_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK00458.1\|1629951_1632237_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
CP024141.1\|AUK00466.1\|1648958_1649735_+\|DUF2135-domain-containing-protein	unknown	unknown	gnl\|CDD\|227021
CP024141.1\|AUK00459.1\|1632932_1636685_+\|AIDA-I-family-autotransporter-YfaL	unknown	unknown	gnl\|CDD\|182059
CP024141.1\|AUK00462.1\|1640457_1642146_+\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
CP024141.1\|AUK00460.1\|1636812_1637535_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
CP024141.1\|AUK00461.1\|1637681_1640309_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
CP024141.1\|AUK00453.1\|1624376_1625453_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
CP024141.1\|AUK03588.1\|1628586_1629717_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
CP024141.1\|AUK00450.1\|1621112_1622741_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
CP024141.1\|AUK00464.1\|1642699_1647304_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225248
CP024141.1\|AUK00451.1\|1622765_1622963_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK00463.1\|1642142_1642766_+\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
CP024141.1\|AUK00456.1\|1627628_1628279_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182136
CP024141.1\|AUK00457.1\|1628332_1628587_-\|ferredoxin	unknown	unknown	gnl\|CDD\|182668

Protein	Function_ID	Function_description	E-value
CP024141.1\|AUK00455.1\|1627207_1627414_-\|hypothetical-protein	gnl\|CDD\|182050	PRK09729, PRK09729, hypothetical protein; Provisional.	1.11661e-35
CP024141.1\|AUK00459.1\|1632932_1636685_+\|AIDA-I-family-autotransporter-YfaL	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
CP024141.1\|AUK00465.1\|1647304_1648954_+\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	2.34326e-127
CP024141.1\|AUK00452.1\|1623013_1624372_+\|MFS-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
CP024141.1\|AUK00467.1\|1649808_1650993_-\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
CP024141.1\|AUK00458.1\|1629951_1632237_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
CP024141.1\|AUK00460.1\|1636812_1637535_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.58484e-171
CP024141.1\|AUK00462.1\|1640457_1642146_+\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
CP024141.1\|AUK00466.1\|1648958_1649735_+\|DUF2135-domain-containing-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	6.03617e-152
CP024141.1\|AUK00461.1\|1637681_1640309_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
CP024141.1\|AUK00453.1\|1624376_1625453_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
CP024141.1\|AUK03588.1\|1628586_1629717_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
CP024141.1\|AUK00449.1\|1619863_1621123_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
CP024141.1\|AUK00450.1\|1621112_1622741_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
CP024141.1\|AUK00464.1\|1642699_1647304_+\|hypothetical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
CP024141.1\|AUK00463.1\|1642142_1642766_+\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	1.22167e-137
CP024141.1\|AUK00456.1\|1627628_1628279_+\|hypothetical-protein	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	1.43283e-158
CP024141.1\|AUK00457.1\|1628332_1628587_-\|ferredoxin	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53

>CP024141.1|AUK03588.1|1628586_1629717_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>CP024141.1|AUK00457.1|1628332_1628587_-|ferredoxin
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>CP024141.1|AUK00456.1|1627628_1628279_+|hypothetical-protein
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>CP024141.1|AUK00455.1|1627207_1627414_-|hypothetical-protein
MNFIRQGLGIALQPELTLKSIAGELCSVPLESTFYRQISLLAKEKPVEGSPLFLLQTCTEQLVVSGKI
>CP024141.1|AUK00454.1|1625671_1626742_-|hypothetical-protein
MPNTSIHLSRCNILQNNKLQPEEVYKESQQTAKLEIFCDEFLKISQSRYGLSTSADSIANLLTFFTKASDAIDRIKTQKIDVHSYGFVPIRHFVEHVITYKNEFAADYEPYTLTFTRGENNEGVLSIESKEGSISQRTINLNEYETAINIINEHVTKENIHNTVQSLTEKDISKINSSDKHHKISSEESIKSQLYSDQKKYADLLLHSEKNTEWYKYASSEERYDKFKNSSKEIKNTYKQIVLAQKKLNQMKYINKLGGELIDIADKKLAPLINDSFSYTRDFFAYSKQENNIFTFDNSKFVDPKEKEGLMIQHSNGQLVITGKYCPEGVQTAFTQEQYDKLIRHINIFFTFPKCE
>CP024141.1|AUK00453.1|1624376_1625453_+|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>CP024141.1|AUK00452.1|1623013_1624372_+|MFS-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>CP024141.1|AUK00451.1|1622765_1622963_-|hypothetical-protein
MGEPAVSLVAAMLRKHSEIKCELPHTLLNKIYKMFRMTHEITFHFRIMSEYARNQTIHVFTMAKW
>CP024141.1|AUK00450.1|1621112_1622741_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>CP024141.1|AUK00449.1|1619863_1621123_-|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRATWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDQTLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>CP024141.1|AUK00458.1|1629951_1632237_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>CP024141.1|AUK00459.1|1632932_1636685_+|AIDA-I-family-autotransporter-YfaL
MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLIDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILHYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>CP024141.1|AUK00460.1|1636812_1637535_-|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>CP024141.1|AUK00461.1|1637681_1640309_+|DNA-gyrase-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>CP024141.1|AUK00462.1|1640457_1642146_+|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETIPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIASDLLSGKKRWQASFGLEERAAEKTPVRQRIVASARLLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>CP024141.1|AUK00463.1|1642142_1642766_+|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANEALKVHDSKWLKSNGIASQYLPPEMTLKPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWILNDSNPNFIGIYRLNFLAR
>CP024141.1|AUK00464.1|1642699_1647304_+|hypothetical-protein
MDTQRFQSQFHWHLSFKFSGAIAACLSLSLVGTGLANADDSLPSSNYAPPAGGTFFLLADSSFSSSEEAKVRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVIGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVTLNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVRVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQAIGVTQQPEYWQHMLDSYAEQADNVPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDPSDINDSLIFDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYARDKAANSNQPLAHTVVLLNSGGDATQTAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>CP024141.1|AUK00465.1|1647304_1648954_+|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEETPLQLALRGAQHDQLYQLSSSGVTKVSALPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVKPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMAAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKKPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>CP024141.1|AUK00466.1|1648958_1649735_+|DUF2135-domain-containing-protein
MRKIFLPLLLVALSPVVHSEGVQEVEIDAPLSGWHPVEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>CP024141.1|AUK00467.1|1649808_1650993_-|acetyl-CoA-C-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSLHIDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKANSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKTLGFDPEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN

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Crispr_ID: CP024141_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024141_5

1856242-1856377

Orphan

Consensus_repeat	Method
CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024141_5

>merge|CP024141|5|1856242-1856377|CRISPRCasFinder
CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACTGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACGGTTCTGTGCTCGGGTCTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA

>CP024141|5|5|1856242-1856377|CRISPRCasFinder
CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA	CTGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACGGTTCTGTGCTCGGGT
CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP024141.1\|AUK00636.1\|1846440_1847562_+\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
CP024141.1\|AUK00648.1\|1861762_1862383_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|274656
CP024141.1\|AUK00634.1\|1845104_1845851_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaE	unknown	unknown	gnl\|CDD\|182218
CP024141.1\|AUK00644.1\|1856437_1857718_+\|colanic-acid-biosynthesis-pyruvyl-transferase-WcaK	unknown	unknown	gnl\|CDD\|188521
CP024141.1\|AUK00646.1\|1858945_1860340_+\|colanic-acid-biosynthesis-protein-WcaM	unknown	unknown	gnl\|CDD\|182253
CP024141.1\|AUK00652.1\|1865844_1867050_+\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK00637.1\|1847564_1848530_+\|GDP-fucose-synthetase	unknown	unknown	gnl\|CDD\|187550
CP024141.1\|AUK00649.1\|1862382_1863423_+\|N-acetylneuraminate-synthase	unknown	unknown	gnl\|CDD\|274655
CP024141.1\|AUK00642.1\|1853288_1854683_+\|undecaprenyl-phosphate-glucose-phosphotransferase	unknown	unknown	gnl\|CDD\|182254
CP024141.1\|AUK00651.1\|1864678_1865833_+\|UDP-N-acetylglucosamine-2-epimerase-(hydrolyzing)	unknown	unknown	gnl\|CDD\|274654
CP024141.1\|AUK00639.1\|1849008_1850232_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaI	unknown	unknown	gnl\|CDD\|188522
CP024141.1\|AUK00641.1\|1851863_1853234_+\|phosphomannomutase-CpsG	unknown	unknown	gnl\|CDD\|185312
CP024141.1\|AUK00645.1\|1857714_1858935_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaL	unknown	unknown	gnl\|CDD\|188520
CP024141.1\|AUK00640.1\|1850234_1851671_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|185357
CP024141.1\|AUK00650.1\|1863422_1864682_+\|acylneuraminate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|133006
CP024141.1\|AUK00647.1\|1860514_1861408_+\|GalU-regulator-GalF	unknown	unknown	gnl\|CDD\|182252
CP024141.1\|AUK00635.1\|1845866_1846415_+\|colanic-acid-biosynthesis-acetyltransferase-WcaF	unknown	unknown	gnl\|CDD\|188523
CP024141.1\|AUK00653.1\|1867046_1868294_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240533
CP024141.1\|AUK00638.1\|1848532_1849012_+\|GDP-mannose-mannosyl-hydrolase	unknown	unknown	gnl\|CDD\|237966
CP024141.1\|AUK00643.1\|1854684_1856163_+\|colanic-acid-exporter	unknown	unknown	gnl\|CDD\|236697

Protein	Function_ID	Function_description	E-value
CP024141.1\|AUK00636.1\|1846440_1847562_+\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	0
CP024141.1\|AUK00648.1\|1861762_1862383_+\|shikimate-dehydrogenase	gnl\|CDD\|274656	TIGR03570, NeuD_NnaD, sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. This family of proteins includes the characterized NeuD sialic acid O-acetyltransferase enzymes from E. coli and Streptococcus agalactiae (group B strep). These two are quite closely related to one another, so extension of this annotation to other members of the family in unsupported without additional independent evidence. The neuD gene is often observed in close proximity to the neuABC genes for the biosynthesis of CMP-N-acetylneuraminic acid (CMP-sialic acid), and NeuD sequences from these organisms were used to construct the seed for this model. Nevertheless, there are numerous instances of sequences identified by this model which are observed in a different genomic context (although almost universally in exopolysaccharide biosynthesis-related loci), as well as in genomes for which the biosynthesis of sialic acid (SA) is undemonstrated. Even in the cases where the association with SA biosynthesis is strong, it is unclear in the literature whether the biological substrate is SA iteself, CMP-SA, or a polymer containing SA. Similarly, it is unclear to what extent the enzyme has a preference for acetylation at the 7, 8 or 9 positions. In the absence of evidence of association with SA, members of this family may be involved with the acetylation of differring sugar substrates, or possibly the delivery of alternative acyl groups. The closest related sequences to this family (and those used to root the phylogenetic tree constructed to create this model) are believed to be succinyltransferases involved in lysine biosynthesis. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.	2.2291e-61
CP024141.1\|AUK00634.1\|1845104_1845851_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaE	gnl\|CDD\|182218	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE.	1.36086e-180
CP024141.1\|AUK00644.1\|1856437_1857718_+\|colanic-acid-biosynthesis-pyruvyl-transferase-WcaK	gnl\|CDD\|188521	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK. This gene is the pyruvyl transferase involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species.	0
CP024141.1\|AUK00646.1\|1858945_1860340_+\|colanic-acid-biosynthesis-protein-WcaM	gnl\|CDD\|182253	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional.	0
CP024141.1\|AUK00637.1\|1847564_1848530_+\|GDP-fucose-synthetase	gnl\|CDD\|187550	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs. GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
CP024141.1\|AUK00649.1\|1862382_1863423_+\|N-acetylneuraminate-synthase	gnl\|CDD\|274655	TIGR03569, ORF_8_similar_to_NeuB_family, N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.	0
CP024141.1\|AUK00642.1\|1853288_1854683_+\|undecaprenyl-phosphate-glucose-phosphotransferase	gnl\|CDD\|182254	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional.	0
CP024141.1\|AUK00651.1\|1864678_1865833_+\|UDP-N-acetylglucosamine-2-epimerase-(hydrolyzing)	gnl\|CDD\|274654	TIGR03568, Polysialic_acid_biosynthesis_protein_P7, UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.	5.98143e-167
CP024141.1\|AUK00639.1\|1849008_1850232_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaI	gnl\|CDD\|188522	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI. This gene is one of the glycosyl transferases involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species.	0
CP024141.1\|AUK00641.1\|1851863_1853234_+\|phosphomannomutase-CpsG	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
CP024141.1\|AUK00645.1\|1857714_1858935_+\|colanic-acid-biosynthesis-glycosyltransferase-WcaL	gnl\|CDD\|188520	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL. This gene is one of the glycosyl transferases involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species.	0
CP024141.1\|AUK00640.1\|1850234_1851671_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|185357	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional.	0
CP024141.1\|AUK00650.1\|1863422_1864682_+\|acylneuraminate-cytidylyltransferase	gnl\|CDD\|133006	cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.	1.24118e-76
CP024141.1\|AUK00647.1\|1860514_1861408_+\|GalU-regulator-GalF	gnl\|CDD\|182252	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF.	0
CP024141.1\|AUK00635.1\|1845866_1846415_+\|colanic-acid-biosynthesis-acetyltransferase-WcaF	gnl\|CDD\|188523	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF. This gene is one of the glycosyl transferases involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species. This acetyltransferase is believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit).	7.2871e-132
CP024141.1\|AUK00653.1\|1867046_1868294_+\|hypothetical-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	5.96687e-12
CP024141.1\|AUK00638.1\|1848532_1849012_+\|GDP-mannose-mannosyl-hydrolase	gnl\|CDD\|237966	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase.	1.30195e-118
CP024141.1\|AUK00643.1\|1854684_1856163_+\|colanic-acid-exporter	gnl\|CDD\|236697	PRK10459, PRK10459, MOP flippase family protein.	0

>CP024141.1|AUK00643.1|1854684_1856163_+|colanic-acid-exporter
MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGIVVCVAVFLLSDAIGDVLNNPDLAPLIKTLSLAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTVVSAHFWPLAMTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLASVAPNLRFGAWLTADSIINYLNTNLSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQIINTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTLVVSYALGIVLKGQLALGMLLAVQIAAGVLAFVVMIVLSRHPLVVEVKRQFCRSEKMKMLLRAG
>CP024141.1|AUK00642.1|1853288_1854683_+|undecaprenyl-phosphate-glucose-phosphotransferase
MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSFLYMHLLVALITLVVFQMLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFNNDFDTQLKIWLAWYGLTSIGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLMESFRNQPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGARVKKLVHQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRAEDIVLATLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVMENDKVVTQATQNDPRVTKVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYRQLIEGYMLRHKVKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSVWFDIKIVFLTVFKGFVNKAAY
>CP024141.1|AUK00641.1|1851863_1853234_+|phosphomannomutase-CpsG
MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIMLGGDVRLTSETLKLALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPMDYNGMKLVREGARPISGDTGLRDVQRLAEANNFPPVDETKRGRYQQINLRDAYIDHLFGYINVKNLTPLKLVINSGNGAAGPVVDAIEARFKVLGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNPGAKIIHDPRLSWNTVDVVTAAGGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELVCLKGKTLGKLVRDRMAAFPASGEINSKLAQPVEAINRVEQHFSREALAVDRTDGISMTFADWRFNLRSSNTEPVVRLNVESRGDVPLMEARTRTLLTLLNE
>CP024141.1|AUK00640.1|1850234_1851671_+|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNKLTKNIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAKAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEISAHTAEGNVCHGDVINHKTENSYVYAESGLVTTVGVKDLVVVQTKDAVLIADRNAVQDVKKVVEQIKADGRHEHRVHREVYRPWGKYDSIDAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGSYLEEDDVVRFADRYGRV
>CP024141.1|AUK00639.1|1849008_1850232_+|colanic-acid-biosynthesis-glycosyltransferase-WcaI
MKILVYGINYSPELTGIGKYTGEMVEWLAAQGHEVRVITAPPYYPQWQVGENYSAWRYKREEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQRRWNPDRIIGVVPTLFCTPGMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVAQLATAFERSGLHNVDNVSTISRSMMNKAIEKGVAADNIIFFPNWSEIARFQHVADADVDALRNQLGLPDNKKIILYSGNIGEKQGLENVIEAADRLRDEPLIFAIVGQGGGKARLEKMAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGNAVITAEAYTELGQLCETFPGIAVCVEPESVEALVAGIRQALLLPKHNTVAREYAERTLDKENVLRQFINDIRG
>CP024141.1|AUK00638.1|1848532_1849012_+|GDP-mannose-mannosyl-hydrolase
MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVAEEELLLPDEQHDDYRWLTPDALLASDNVHANSRAYFLAEKRAGVPGL
>CP024141.1|AUK00637.1|1847564_1848530_+|GDP-fucose-synthetase
MSKQRIFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNIMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQDRFRG
>CP024141.1|AUK00636.1|1846440_1847562_+|GDP-mannose-4,6-dehydratase
MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHSLLKSHGYDVAIALES
>CP024141.1|AUK00635.1|1845866_1846415_+|colanic-acid-biosynthesis-acetyltransferase-WcaF
MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFAWSPQVLYRWRAFLLRLFGAKIGKNVVIRPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQKSYLCTGSHDHASQHFTINATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKSLPANVVCRGNPAVVIRERVETE
>CP024141.1|AUK00634.1|1845104_1845851_+|colanic-acid-biosynthesis-glycosyltransferase-WcaE
MLLSIITVAFRNLEGIVKTHASLAHLAQADDISFEWIVVDGGSNDGTREYLENLNSIYNLRFVSEPDNGIYDAMNKGIAMAQGKFALFLNSGDIFHQDAANFVRKLKMQKDNMMITGDALLDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSGLKKWRYDLEYKVSSDYALAAKMYKAGYAFKKLNGLVSEFSMGGVSTTNNMELCADAKKVQRQILHVPGFWAELSWHLRQRTTSKTKALYNKS
>CP024141.1|AUK00644.1|1856437_1857718_+|colanic-acid-biosynthesis-pyruvyl-transferase-WcaK
MKLLILGNHTCGNRGDSAILRGLLDAINILNPQAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGPFQDEQFNQLANYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDTAWLVDHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEMGKILGACELTVGTRLHSAIISMNFATPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNARLNEAVSRERHTGMQMVQSVLERIGEVK
>CP024141.1|AUK00645.1|1857714_1858935_+|colanic-acid-biosynthesis-glycosyltransferase-WcaL
MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAARTRWLQDEPQGKVAKLRHRASQTLRGIHRKNTWQALNLKRYGAESRNLILSAICGQVATPFRADVFIAHFGPAGVTAAKLRELGVIRGKIATIFHGIDISSREVLNHYTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKAPATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPENDARALAQRLAAFSQLGTDELAPVVKRAREKVEHDFNQQVINRELASLLQAL
>CP024141.1|AUK00646.1|1858945_1860340_+|colanic-acid-biosynthesis-protein-WcaM
MPFKKLSRRTFLTASSALAFLHTPFAGALPARQSVNINDYNPHDWIASFKQAFSEGQTVVVPAGLVCDNINTGIFIPAGKTLHILGSLRGNGRGRFILQDGSQVTGEEGGSMHNITLDVRGSDCTIKGLAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQIIGANITNCNFSDLQGDAIEWNVAINDSDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIKARNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNFRVNNIQLDNTHLAYKLRGIQISAGNAVSFVALTNIEMKRASLELHNKPQHLFMRNINVMQESSVGPALSMNFDMRKDVRGVFMAKRETLLSLTNIHAVNEKGQSSVDIDRINHHIVNVEKINFRLPERRE
>CP024141.1|AUK00647.1|1860514_1861408_+|GalU-regulator-GalF
MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEILLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGEPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRSQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLESDIMAVGRYVLSADIWPELERTQPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRNLKEGAKFRELIIKSLQE
>CP024141.1|AUK00648.1|1861762_1862383_+|shikimate-dehydrogenase
MKKLVILGAGGFSKSIIDSIDHDLYEIAGFIDTYKTGNHQGYPILANSLQELSQKNKYHYFIGIGEPAVRYYFYNLLKKYELKLVNIIDKSALVSRDVILGSGIYIGKMSIVNPDTKIADCAVINTRSLIEHGNCVGCCSNISTNVVLNGDVKVDELTFIGSSSVINGQLLIGKNSIIGSGSVVIRNVPDNVVVVGAPAKIIKERK
>CP024141.1|AUK00649.1|1862382_1863423_+|N-acetylneuraminate-synthase
MEKVYIVAEIGCNHNGDFLIAKKMVSEAKMAGVDAVKFQTFKAELLISKYAPKAEYQKKVTDADESQLDMTKKLELPYDRYIELENYARSLGLDVFSTPFDLDSIDFLYSQKQKTWKIPSGELLNLPYIEKIAKLPIDDKRIIISTGMSTIDEIKLCLSVFDNNGVPKSNITILHCNTEYPTPFGDVNLSVISSYKKIFPEYNIGFSDHSPGFYAGIAAVPFGITFIEKHFTLDKTLPGPDHKASVTPDELRMLCEGIRCVELALGSPDKKVTDSEKKNKIVARKSIVAKTKIAKGDIFTVDNITTKRPGNGISPMYWYDILGKAAEFDFEEDELVVHTAYKPQEV
>CP024141.1|AUK00650.1|1863422_1864682_+|acylneuraminate-cytidylyltransferase
MLKKIALIPARSGSKGLVDKNILMLLDKPLIAYTIIAALDSGVFDKVIVSTDSKKYKDIAESFGAEVIMRDARYSSDTSTTYTVIEHALRKIKQHYDYFALLQPTSPFRNAFHIKEAVDRFEKSKSFDFLVSVTESTVQSCLIKPIDDDLSLKYYNLDYSNYRRQNCMEYHPNGAIFLGKISPYFKQKHFFGEKTLSYIMDRESSVDIDDRLDFELAIALANKINKKEILKQSILAKIEERKSHISSNSADITLIGHSLFDNWSINEISGLKVNNFGIAGINTVQYINYILENKIIKDIGRYAFVFAGTNDIVDADWTIEKNIKEIQTLIDKIKFINNGSTIFLFTVPPVRGRLDRDNITIEKLNIAIKKNIFNCNIIDLSPDFSDEYNDLKSDYTYDGLHFTDKAYNKLKNIIEAVLK
>CP024141.1|AUK00651.1|1864678_1865833_+|UDP-N-acetylglucosamine-2-epimerase-(hydrolyzing)
MKKILYVSGSRAEYGIMKRLLLELSKEQNIELKIIVTGMHCDPKYGMTYKYIYDDGFDVIERIDINLKNDNNFSVVKSMSLCQNSIAKHFETHKYDAVIVLGDRYEIFAASVAAAMNNIPIIHLHGGEQTLGNYDEFIRHAITKMSRLHLVSTEIYRKRVIQLGEHPETVFNIGALGAENSLSINLPNKDSLQQKFGNLIKPYFMVVFHPETITNNSPSEQTKELLSALEFIKDRFDFIFIGANSDTGSGSITNLVIEFCNRYGFRFITSVQSEDYLALSKYSVGLIGNSSSGLIEIPSFRIPTINIGDRQKGRVRGKSVIDVICKREKILEAIIYSQSDTFKKMLEDSVNPYYKKSSLTSARDIILDFIHSKHPVAKSFYDLE
>CP024141.1|AUK00652.1|1865844_1867050_+|hypothetical-protein
MKINIDKFIFSFFIYGVIFFPGMLMLLYDNLGSNYYGIIVIVSLVIVFKFIFNHNELFIAKKTFSSIFIIAGLIGFHLFIAVNLFELEKEENIFKILLSLLSLVAIFIACIFSINSLLKIDDNAFLNIVNNIFNILLLVGIYSSVMMVLGGKTDKRMLFFTEPSHYALIVTIFYAYKIAIKKTNIIYCLPLFIIALCIQNLSLIIGVTFAISINFLRLRTLLLIPLILVPLYTIAINVISQDRLDYYFQRLNISENSTNTSTLTLMSGYEQAYLALKDSYGFGFGLQRMGYPNNRGSFVDIIGLLRDGNTDSNLHDGGLFISKLTVEFGVLGVGFFLYVTMLGVKNINTRCLKSKFFSMVLVMSLMYFLLRGSGYFTPSAILIFMSIVFIKAHRIKNMESE
>CP024141.1|AUK00653.1|1867046_1868294_+|hypothetical-protein
MNFRNFILYGLSVGLNRGIVFFLLPLAGYFLNKNDFGTFSLIIITSQLLIPILTINVSSVIAREFLDAKEMLNRYVGYIVILLIGMTILSMLFGGKYKNVFCFIISESLLMVLITRARFFLGVNTYFVATVLKAISFLLIFLIVFLLRHGFLYNVNSFCIMLALSNYVAILFVLSKDFFINISYKVSLSNLHFFLQKDKKFIWFGILLIPHSLSQWVMSSSDRYIIKVFFNDTVLGEYSLAYAYASLFMLFISVLAITLPEYCIRKYDSFCKKRMLLMFMSTMALVYIFGFISLYVVVLQYINFNVREINIFCIIYSSLFYLVMYHYCSSFHFYHKRSKFITKTTLLASLFSVLITLIFAWKGNIIGVSFCTYFSYFFYFLLIRRGVSTINTNVVISVMMISFIPLLIRCFHVIS

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Crispr_ID: CP024141_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024141_6

2305030-2305153

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024141_6

>merge|CP024141|6|2305030-2305153|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP024141|6|6|2305030-2305153|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP024141.1\|AUK01072.1\|2297118_2297745_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182135
CP024141.1\|AUK01076.1\|2302859_2304464_-\|FAD/NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|182134
CP024141.1\|AUK01069.1\|2293937_2294174_-\|murein-lipoprotein	unknown	unknown	gnl\|CDD\|185294
CP024141.1\|AUK01073.1\|2297765_2299868_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
CP024141.1\|AUK01070.1\|2294484_2295897_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699
CP024141.1\|AUK01083.1\|2311796_2312729_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
CP024141.1\|AUK01081.1\|2309033_2310182_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
CP024141.1\|AUK01075.1\|2302035_2302848_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
CP024141.1\|AUK01087.1\|2314304_2315474_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
CP024141.1\|AUK01079.1\|2306764_2308138_-\|multidrug-resistance-protein-MdtK	unknown	unknown	gnl\|CDD\|234981
CP024141.1\|AUK01077.1\|2304589_2304895_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
CP024141.1\|AUK01085.1\|2313738_2313963_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK01080.1\|2308352_2308994_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
CP024141.1\|AUK01074.1\|2299871_2300519_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182160
CP024141.1\|AUK01084.1\|2312725_2313751_-\|PurR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236739
CP024141.1\|AUK03616.1\|2300582_2301251_+\|thiosulfate-reductase-electron-transport-protein-PhsB	unknown	unknown	gnl\|CDD\|274451
CP024141.1\|AUK01071.1\|2296453_2296663_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
CP024141.1\|AUK01086.1\|2314049_2314139_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
CP024141.1\|AUK01078.1\|2305467_2306724_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
CP024141.1\|AUK01082.1\|2310472_2311684_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924

Protein	Function_ID	Function_description	E-value
CP024141.1\|AUK01072.1\|2297118_2297745_+\|hypothetical-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
CP024141.1\|AUK01076.1\|2302859_2304464_-\|FAD/NAD(P)-binding-domain-containing-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
CP024141.1\|AUK01069.1\|2293937_2294174_-\|murein-lipoprotein	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	2.83509e-37
CP024141.1\|AUK01073.1\|2297765_2299868_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
CP024141.1\|AUK01070.1\|2294484_2295897_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
CP024141.1\|AUK01083.1\|2311796_2312729_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
CP024141.1\|AUK01081.1\|2309033_2310182_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
CP024141.1\|AUK01075.1\|2302035_2302848_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	8.20825e-175
CP024141.1\|AUK01087.1\|2314304_2315474_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
CP024141.1\|AUK01079.1\|2306764_2308138_-\|multidrug-resistance-protein-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
CP024141.1\|AUK01077.1\|2304589_2304895_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
CP024141.1\|AUK01080.1\|2308352_2308994_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
CP024141.1\|AUK01074.1\|2299871_2300519_+\|hypothetical-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	2.81741e-122
CP024141.1\|AUK01084.1\|2312725_2313751_-\|PurR-family-transcriptional-regulator	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
CP024141.1\|AUK03616.1\|2300582_2301251_+\|thiosulfate-reductase-electron-transport-protein-PhsB	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.09652e-76
CP024141.1\|AUK01071.1\|2296453_2296663_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
CP024141.1\|AUK01078.1\|2305467_2306724_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
CP024141.1\|AUK01082.1\|2310472_2311684_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0

>CP024141.1|AUK01077.1|2304589_2304895_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>CP024141.1|AUK01076.1|2302859_2304464_-|FAD/NAD(P)-binding-domain-containing-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRAPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>CP024141.1|AUK01075.1|2302035_2302848_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC
>CP024141.1|AUK03616.1|2300582_2301251_+|thiosulfate-reductase-electron-transport-protein-PhsB
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>CP024141.1|AUK01074.1|2299871_2300519_+|hypothetical-protein
MGEMNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>CP024141.1|AUK01073.1|2297765_2299868_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLFGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPV
>CP024141.1|AUK01072.1|2297118_2297745_+|hypothetical-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>CP024141.1|AUK01071.1|2296453_2296663_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>CP024141.1|AUK01070.1|2294484_2295897_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>CP024141.1|AUK01069.1|2293937_2294174_-|murein-lipoprotein
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
>CP024141.1|AUK01078.1|2305467_2306724_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFIVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>CP024141.1|AUK01079.1|2306764_2308138_-|multidrug-resistance-protein-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVIILQRASR
>CP024141.1|AUK01080.1|2308352_2308994_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>CP024141.1|AUK01081.1|2309033_2310182_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>CP024141.1|AUK01082.1|2310472_2311684_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>CP024141.1|AUK01083.1|2311796_2312729_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>CP024141.1|AUK01084.1|2312725_2313751_-|PurR-family-transcriptional-regulator
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>CP024141.1|AUK01085.1|2313738_2313963_-|hypothetical-protein
MISVFTTSPFRQDRPKFHAYTICVLAIDPFLTLRVVFPAYRNTFVVRKVCKGKRLPCDFAGAEVRVWSEMEWQQ
>CP024141.1|AUK01086.1|2314049_2314139_+|YnhF-family-membrane-protein
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>CP024141.1|AUK01087.1|2314304_2315474_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS

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Crispr_ID: CP024141_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024141_8

3362723-3362867

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024141_8

>merge|CP024141|8|3362723-3362867|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>CP024141|8|8|3362723-3362867|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
CP024141.1\|AUK02075.1\|3366843_3367896_-\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
CP024141.1\|AUK02078.1\|3370223_3371042_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|182523
CP024141.1\|AUK02074.1\|3365334_3366768_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|279307
CP024141.1\|AUK02067.1\|3357119_3358274_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
CP024141.1\|AUK02066.1\|3356377_3357133_-\|malonyl-[acyl-carrier-protein]-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
CP024141.1\|AUK02068.1\|3358270_3359311_-\|biotin-synthase	unknown	unknown	gnl\|CDD\|185063
CP024141.1\|AUK02082.1\|3373587_3373797_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02071.1\|3361136_3361316_+\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02073.1\|3362890_3365152_-\|hydratase	unknown	unknown	gnl\|CDD\|183125
CP024141.1\|AUK02081.1\|3372792_3373566_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
CP024141.1\|AUK02064.1\|3353107_3355129_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
CP024141.1\|AUK02076.1\|3368079_3369033_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
CP024141.1\|AUK02063.1\|3352007_3352916_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
CP024141.1\|AUK02079.1\|3371042_3372101_-\|molybdenum-import-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
CP024141.1\|AUK02080.1\|3372103_3372793_-\|molybdenum-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181841
CP024141.1\|AUK02065.1\|3355707_3356385_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
CP024141.1\|AUK02072.1\|3361373_3362657_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|236709
CP024141.1\|AUK02077.1\|3369073_3370069_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
CP024141.1\|AUK02069.1\|3359397_3360687_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
CP024141.1\|AUK02070.1\|3360745_3361222_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339

Protein	Function_ID	Function_description	E-value
CP024141.1\|AUK02075.1\|3366843_3367896_-\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
CP024141.1\|AUK02078.1\|3370223_3371042_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
CP024141.1\|AUK02076.1\|3368079_3369033_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.09679e-82
CP024141.1\|AUK02067.1\|3357119_3358274_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
CP024141.1\|AUK02066.1\|3356377_3357133_-\|malonyl-[acyl-carrier-protein]-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	7.9121e-172
CP024141.1\|AUK02068.1\|3358270_3359311_-\|biotin-synthase	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
CP024141.1\|AUK02074.1\|3365334_3366768_-\|hypothetical-protein	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
CP024141.1\|AUK02073.1\|3362890_3365152_-\|hydratase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
CP024141.1\|AUK02081.1\|3372792_3373566_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
CP024141.1\|AUK02064.1\|3353107_3355129_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP024141.1\|AUK02080.1\|3372103_3372793_-\|molybdenum-ABC-transporter-permease	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146
CP024141.1\|AUK02063.1\|3352007_3352916_+\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	2.22556e-139
CP024141.1\|AUK02079.1\|3371042_3372101_-\|molybdenum-import-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
CP024141.1\|AUK02065.1\|3355707_3356385_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	7.09172e-110
CP024141.1\|AUK02072.1\|3361373_3362657_+\|acyl-CoA-thioesterase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
CP024141.1\|AUK02077.1\|3369073_3370069_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
CP024141.1\|AUK02069.1\|3359397_3360687_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
CP024141.1\|AUK02070.1\|3360745_3361222_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	1.08182e-118

>CP024141.1|AUK02072.1|3361373_3362657_+|acyl-CoA-thioesterase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>CP024141.1|AUK02071.1|3361136_3361316_+|hypothetical-protein
MKVPAARWSGLTFISTLWQAPRLLRCLVNHSARWRNAIWYHLKVLKTTFCLFTFPFRSS
>CP024141.1|AUK02070.1|3360745_3361222_+|kinase-inhibitor
MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFS
>CP024141.1|AUK02069.1|3359397_3360687_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTTDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGKRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIIESGEWQQQVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
>CP024141.1|AUK02068.1|3358270_3359311_-|biotin-synthase
MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
>CP024141.1|AUK02067.1|3357119_3358274_-|8-amino-7-oxononanoate-synthase
MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG
>CP024141.1|AUK02066.1|3356377_3357133_-|malonyl-[acyl-carrier-protein]-O-methyltransferase-BioC
MATVNKQAIAAAFGRAAAHYEQHADLQRQSADALLAMLPQRKYTHVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPKGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE
>CP024141.1|AUK02065.1|3355707_3356385_-|ATP-dependent-dethiobiotin-synthetase-BioD
MSKRYFVTGTDTEVGKTVASCALLQAAKAVGYRTAGYKPVASGSEKTPEGLRNSDALALQHNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQAIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
>CP024141.1|AUK02064.1|3353107_3355129_-|excinuclease-ABC-subunit-B
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>CP024141.1|AUK02063.1|3352007_3352916_+|hypothetical-protein
MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQALG
>CP024141.1|AUK02073.1|3362890_3365152_-|hydratase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYKIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>CP024141.1|AUK02074.1|3365334_3366768_-|hypothetical-protein
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALATGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>CP024141.1|AUK02075.1|3366843_3367896_-|4-oxalomesaconate-tautomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>CP024141.1|AUK02076.1|3368079_3369033_+|LysR-family-transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>CP024141.1|AUK02077.1|3369073_3370069_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYSIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>CP024141.1|AUK02078.1|3370223_3371042_+|Cof-type-HAD-IIB-family-hydrolase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>CP024141.1|AUK02079.1|3371042_3372101_-|molybdenum-import-ATP-binding-protein-ModC
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>CP024141.1|AUK02080.1|3372103_3372793_-|molybdenum-ABC-transporter-permease
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>CP024141.1|AUK02081.1|3372792_3373566_-|molybdate-ABC-transporter-substrate-binding-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVAIFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK
>CP024141.1|AUK02082.1|3373587_3373797_-|hypothetical-protein
MVKYSTSFLVLVKKTSPDKIIDSLNARLVGHFLFLNFLLFLPIFFLIYLTKVSNNCWENSELVVILSPT

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Crispr_ID: CP024141_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024141_9

3859616-3859712

Orphan

Consensus_repeat	Method
TAGTTCACAGTGACCTACCCCCTAGCTCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024141_9

>merge|CP024141|9|3859616-3859712|CRISPRCasFinder
TAGTTCACAGTGACCTACCCCCTAGCTCACTATGACCTACCCCCTAGCTCATAGTGAACTACCCCCCTAGTTCACAGTGACCTACCCCCTAGGTCAC

>CP024141|9|9|3859616-3859712|CRISPRCasFinder
TAGTTCACAGTGACCTACCCCCTAGCTCAC	TATGACCTACCCCCTAGCTCATAGTGAACTACCCCCC
TAGTTCACAGTGACCTACCCCCTAGGTCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP024141.1\|AUK02540.1\|3867556_3868015_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
CP024141.1\|AUK02539.1\|3866220_3867465_-\|esterase	unknown	unknown	gnl\|CDD\|235337
CP024141.1\|AUK02534.1\|3861384_3861738_+\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02524.1\|3854135_3855164_-\|phage-capsid-protein	unknown	unknown	gnl\|CDD\|377147
CP024141.1\|AUK02526.1\|3855541_3855754_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02541.1\|3868275_3869733_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
CP024141.1\|AUK02535.1\|3862011_3863265_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
CP024141.1\|AUK02529.1\|3856974_3857250_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02536.1\|3863276_3864380_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
CP024141.1\|AUK02532.1\|3858912_3859152_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02528.1\|3856434_3856845_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02531.1\|3858192_3858381_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02533.1\|3860277_3860514_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02537.1\|3864667_3865723_+\|phosphoporin-PhoE	unknown	unknown	gnl\|CDD\|182275
CP024141.1\|AUK02530.1\|3857261_3857954_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|379352
CP024141.1\|AUK02538.1\|3865761_3866163_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
CP024141.1\|AUK02527.1\|3856097_3856433_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02542.1\|3870089_3870356_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181972
CP024141.1\|AUK02523.1\|3853845_3854049_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02525.1\|3855182_3855545_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP024141.1\|AUK02540.1\|3867556_3868015_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	5.05624e-113
CP024141.1\|AUK02539.1\|3866220_3867465_-\|esterase	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP024141.1\|AUK02536.1\|3863276_3864380_-\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	0
CP024141.1\|AUK02524.1\|3854135_3855164_-\|phage-capsid-protein	gnl\|CDD\|377147	pfam03864, Phage_cap_E, Phage major capsid protein E. Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.	5.72276e-05
CP024141.1\|AUK02537.1\|3864667_3865723_+\|phosphoporin-PhoE	gnl\|CDD\|182275	PRK10159, PRK10159, phosphoporin PhoE.	0
CP024141.1\|AUK02530.1\|3857261_3857954_-\|transcriptional-regulator	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	0.00047183
CP024141.1\|AUK02535.1\|3862011_3863265_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
CP024141.1\|AUK02541.1\|3868275_3869733_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
CP024141.1\|AUK02542.1\|3870089_3870356_-\|hypothetical-protein	gnl\|CDD\|181972	PRK09588, PRK09588, hypothetical protein; Reviewed.	1.93527e-42
CP024141.1\|AUK02538.1\|3865761_3866163_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	1.11584e-87

>CP024141.1|AUK02532.1|3858912_3859152_-|hypothetical-protein
MFSVEKPEATPKENSDLINLTYLIYLTYLSYFIYFIINNSFISSLCSSLTQETEFRKGITLEKCSLRHNVFYEGFRGVS
>CP024141.1|AUK02531.1|3858192_3858381_-|hypothetical-protein
MKWFTSEHVIQAFKKGELTRHQVVMNRNMARSRGYPEREKCFDDALKIIDELRKNEKESETE
>CP024141.1|AUK02530.1|3857261_3857954_-|transcriptional-regulator
MINQLTFTKHYDTFDNVSKIYSDKFPQGKDLDLLHIVLYFRFLSYQENNLNCYESHETLAKIFKSSASTIKRKINDLKEMGLLETSPHPDPYISSLIYNALPLTDAHITPPGESSLFDLSEAAEAQEQPKGHKQPSFDVLDDDWDTPLPWETEETPVSSSEKVANDNEEDVLENFASLIIREKHRRTGGSSFIDFANSLAYRHGLKRPNGIEAYFSKHYPNVYDDFDIPF
>CP024141.1|AUK02529.1|3856974_3857250_-|hypothetical-protein
MIQYLVKNQVDRIQCNDTGKRIYETLAYLYKGKPTPLKYSDVLHRAGCSEDGLKFWLKQLSNFGVIEIKELSFSTFNLKRLDKVEFIYSTL
>CP024141.1|AUK02528.1|3856434_3856845_-|hypothetical-protein
MAKRKNNVVKKIGDSASLLSKPKSILRRKDFKELVTLTKHNSAPGEWKTEIIEHSPSVPCGDEYIALQEILSSTPGVFWKPRKRKEYIVDSSDLRKYQILGFEDYNHYVGYLATNGLNNLVPEFQILDNADHYGDF
>CP024141.1|AUK02527.1|3856097_3856433_-|hypothetical-protein
MNKNTYDTIYSLINYYEDDYLLPLNRAELEAYKENTPAALTEAFKHWDLAVNAFEHLSKRVEMLCKRENAYLTADQVFELSNWIEDIESDVRYVGDGLIELAQRLGAITEE
>CP024141.1|AUK02526.1|3855541_3855754_-|hypothetical-protein
MLFLNDKEQIIKYRDEMLKINPQITEMVAKYAGCSVEEVERCVEKYFSPSSPSTPSLNELIKLKAKEITK
>CP024141.1|AUK02525.1|3855182_3855545_-|hypothetical-protein
MIIDLDALFPSRKTFTDLVAYCTDPFASVESKVFASLPADVECGDLITSTGAKYESGDDIYVVMSEFLTAGANKPVDVLRSNAGLVCIKADALNAVSEAAKTALIKKGFQLEGFNTVFTS
>CP024141.1|AUK02524.1|3854135_3855164_-|phage-capsid-protein
MILGNDYVDLAPLFSAHSTRNYLLSTLDFTDSVGVTSHKVAVSQLVESNESLFNKETSRFSSEHNVTKREQGKEWLIEIPYFLREGLIVPADVQGKRKPGTDFQETLTDIYAEYIAKHNVAFQRTKESVLAASLFSGRTYTPKTDDVLIEWGKLFNVSAMKATVNASATDTTKIFKEFDQIATDIIEKAQSQAAAVERIVVFCKPDAFSAIRFSAGMANAFQYVSPLEEGNVVYQRRDLLPGVTAFTIPGTNIDVVKLVDPLHLAHMTADAVAVPKFAKGSNVYQNIYGAASSTFELINTAPAEVYSYSYESSRGDAVNVVTENSQMVVNHGVGFSVQITVK
>CP024141.1|AUK02523.1|3853845_3854049_-|hypothetical-protein
MEVILKSKNGVHVHLDANDSRGLLNLKYLCSLLDVPYEGVKARMFRLNESIDQALHHFLSKEGGKND
>CP024141.1|AUK02533.1|3860277_3860514_-|hypothetical-protein
MSLTKLSLNTRMIGFMSDQMLETAPRLTRAVSDETSVYAGTGQNIGQNPFNIIIVICTKEHIERLELMYQGKSDGFFT
>CP024141.1|AUK02534.1|3861384_3861738_+|hypothetical-protein
MFFSYQAPVVLRWTKPGLELDSFPIKLGFEEVGFNPLLHLKLLFPSFSLFILCNVSRRVASLDTAPGVEHLAKSFGRRFRDGGTSSSFKGTCYEVEPGNYSPIRVTLPKPITTYRRL
>CP024141.1|AUK02535.1|3862011_3863265_-|glutamate-5-semialdehyde-dehydrogenase
MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILNANAQDVADARANGLGEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGSVLDSGLRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQDALKSCGLPVGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVITGGIGVCHIYVDESVEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMEESGVALHADAAALAQLQTGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIREHGTQHSDAILTRDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLHARGPMGLEALTTYKWIGIGDYTIRA
>CP024141.1|AUK02536.1|3863276_3864380_-|glutamate-5-kinase
MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR
>CP024141.1|AUK02537.1|3864667_3865723_+|phosphoporin-PhoE
MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYMSDNDSKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF
>CP024141.1|AUK02538.1|3865761_3866163_-|sigma-factor-binding-protein-Crl
MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPADDFRDEPVKLTA
>CP024141.1|AUK02539.1|3866220_3867465_-|esterase
MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTIPHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWATQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEAAQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDDALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVYRNFDKGLQEITGWIEKRLC
>CP024141.1|AUK02540.1|3867556_3868015_-|xanthine-phosphoribosyltransferase
MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDNYVVDIPQDTWIEQPWDMGVVFVPPISGR
>CP024141.1|AUK02541.1|3868275_3869733_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWLQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDALKSLVNTYQDILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIKSVGHYWTLLTELLKEIPAK
>CP024141.1|AUK02542.1|3870089_3870356_-|hypothetical-protein
MEWYMGKYIRPLSDAVFTIASDDLWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAFFSVGRFYPARRRGNGAGNRNGPLL

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Crispr_ID: CP024141_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024141_10

3874842-3874995

Orphan

Consensus_repeat	Method
CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024141_10

>merge|CP024141|10|3874842-3874995|CRISPRCasFinder
CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCGTCAGCGTCGCATCAGGCATCTGCGCATAACCGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACCGATCCGGCACAGGTTTGTAGGCATGATAAGACGCG

>CP024141|10|10|3874842-3874995|CRISPRCasFinder
CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	TCAGCGTCGCATCAGGCATCTGCGCATAACCGCCGGATGCGGCGTAAA
CGCCTTATCCGGCCTACCGATCCGGCACAGGTTTGTAGGCATGATAAGACGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP024141.1\|AUK02540.1\|3867556_3868015_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
CP024141.1\|AUK02539.1\|3866220_3867465_-\|esterase	unknown	unknown	gnl\|CDD\|235337
CP024141.1\|AUK02552.1\|3879249_3881694_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|236528
CP024141.1\|AUK02556.1\|3885033_3889287_-\|type-IV-secretion-protein-Rhs	unknown	unknown	gnl\|CDD\|225750
CP024141.1\|AUK02549.1\|3876747_3877488_+\|transpeptidase	unknown	unknown	gnl\|CDD\|225577
CP024141.1\|AUK02548.1\|3875697_3876456_-\|peptidoglycan-endopeptidase	unknown	unknown	gnl\|CDD\|223862
CP024141.1\|AUK02544.1\|3870662_3871115_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
CP024141.1\|AUK02550.1\|3877458_3878226_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
CP024141.1\|AUK02545.1\|3871111_3872167_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP024141.1\|AUK02547.1\|3875024_3875522_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224854
CP024141.1\|AUK02553.1\|3881736_3882210_-\|inhibitor-of-vertebrate-lysozyme	unknown	unknown	gnl\|CDD\|182187
CP024141.1\|AUK02542.1\|3870089_3870356_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181972
CP024141.1\|AUK02554.1\|3882363_3883134_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|182461
CP024141.1\|AUK02555.1\|3884572_3885022_-\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02551.1\|3878431_3879010_-\|phosphoheptose-isomerase	unknown	unknown	gnl\|CDD\|179012
CP024141.1\|AUK02538.1\|3865761_3866163_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
CP024141.1\|AUK02541.1\|3868275_3869733_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
CP024141.1\|AUK03689.1\|3872237_3873026_-\|putative-lateral-flagellar-export/assembly-protein-LafU	unknown	unknown	gnl\|CDD\|235860
CP024141.1\|AUK02543.1\|3870342_3870570_+\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02546.1\|3872967_3874707_+\|flagellar-type-III-secretion-system-protein-FlhA	unknown	unknown	gnl\|CDD\|224217

Protein	Function_ID	Function_description	E-value
CP024141.1\|AUK02540.1\|3867556_3868015_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	5.05624e-113
CP024141.1\|AUK02548.1\|3875697_3876456_-\|peptidoglycan-endopeptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	3.3314e-41
CP024141.1\|AUK02552.1\|3879249_3881694_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
CP024141.1\|AUK02556.1\|3885033_3889287_-\|type-IV-secretion-protein-Rhs	gnl\|CDD\|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	9.21736e-135
CP024141.1\|AUK02539.1\|3866220_3867465_-\|esterase	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP024141.1\|AUK02544.1\|3870662_3871115_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	4.77997e-103
CP024141.1\|AUK02550.1\|3877458_3878226_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	8.29603e-146
CP024141.1\|AUK02545.1\|3871111_3872167_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP024141.1\|AUK02547.1\|3875024_3875522_-\|hypothetical-protein	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.32036e-43
CP024141.1\|AUK02553.1\|3881736_3882210_-\|inhibitor-of-vertebrate-lysozyme	gnl\|CDD\|182187	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional.	9.39999e-93
CP024141.1\|AUK02542.1\|3870089_3870356_-\|hypothetical-protein	gnl\|CDD\|181972	PRK09588, PRK09588, hypothetical protein; Reviewed.	1.93527e-42
CP024141.1\|AUK02554.1\|3882363_3883134_+\|amidohydrolase	gnl\|CDD\|182461	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.	0
CP024141.1\|AUK02551.1\|3878431_3879010_-\|phosphoheptose-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	1.61173e-142
CP024141.1\|AUK02538.1\|3865761_3866163_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	1.11584e-87
CP024141.1\|AUK02541.1\|3868275_3869733_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
CP024141.1\|AUK03689.1\|3872237_3873026_-\|putative-lateral-flagellar-export/assembly-protein-LafU	gnl\|CDD\|235860	PRK06778, PRK06778, hypothetical protein; Validated.	1.31154e-173
CP024141.1\|AUK02549.1\|3876747_3877488_+\|transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.07529e-116
CP024141.1\|AUK02546.1\|3872967_3874707_+\|flagellar-type-III-secretion-system-protein-FlhA	gnl\|CDD\|224217	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion].	0

>CP024141.1|AUK02546.1|3872967_3874707_+|flagellar-type-III-secretion-system-protein-FlhA
MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRISDNGDITHDVRHQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSAVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM
>CP024141.1|AUK03689.1|3872237_3873026_-|putative-lateral-flagellar-export/assembly-protein-LafU
MVTTIKLIVNSVSKSERESIIAALHGQSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRMR
>CP024141.1|AUK02545.1|3871111_3872167_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVILLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL
>CP024141.1|AUK02544.1|3870662_3871115_-|GNAT-family-N-acetyltransferase
MNNIQIRNYQPGDFQQLCAIFIRAVMMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFISRIERHIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQIVKQQHVECRGAWFTNFYMRYKPQH
>CP024141.1|AUK02543.1|3870342_3870570_+|hypothetical-protein
MYHSIYTRHTSSCMYCDCVRSPQSLTLVSSWRFTRLSPSCNSNYLEYINIKNQEMADESRARKKELILERSAKSH
>CP024141.1|AUK02542.1|3870089_3870356_-|hypothetical-protein
MEWYMGKYIRPLSDAVFTIASDDLWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAFFSVGRFYPARRRGNGAGNRNGPLL
>CP024141.1|AUK02541.1|3868275_3869733_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWLQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDALKSLVNTYQDILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIKSVGHYWTLLTELLKEIPAK
>CP024141.1|AUK02540.1|3867556_3868015_-|xanthine-phosphoribosyltransferase
MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDNYVVDIPQDTWIEQPWDMGVVFVPPISGR
>CP024141.1|AUK02539.1|3866220_3867465_-|esterase
MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTIPHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWATQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEAAQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDDALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVYRNFDKGLQEITGWIEKRLC
>CP024141.1|AUK02538.1|3865761_3866163_-|sigma-factor-binding-protein-Crl
MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPADDFRDEPVKLTA
>CP024141.1|AUK02547.1|3875024_3875522_-|hypothetical-protein
MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDINAGERIIL
>CP024141.1|AUK02548.1|3875697_3876456_-|peptidoglycan-endopeptidase
MSFMSSFLLGRFLHPGVFSLCVLLPLFASATTSHISFSYAARQRMQNRARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRRWQALAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDQGFDCSGLVFYAYNKILEAKLPRTANEMYHYHRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGENIRVSRLAEPFWQDHFLGARRILTEETIL
>CP024141.1|AUK02549.1|3876747_3877488_+|transpeptidase
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
>CP024141.1|AUK02550.1|3877458_3878226_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTTPNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV
>CP024141.1|AUK02551.1|3878431_3879010_-|phosphoheptose-isomerase
MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVK
>CP024141.1|AUK02552.1|3879249_3881694_+|acyl-CoA-dehydrogenase
MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALAKGLIDKDEAAILVKAEESRLCSINVDDFDPEELATKPVKLPEKVRKVEAA
>CP024141.1|AUK02553.1|3881736_3882210_-|inhibitor-of-vertebrate-lysozyme
MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK
>CP024141.1|AUK02554.1|3882363_3883134_+|amidohydrolase
MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQNDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAIYVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMVALREYREKFPAWQDADEFRLR
>CP024141.1|AUK02555.1|3884572_3885022_-|hypothetical-protein
MMKYLMVLLSLFSGSVLGMGRVNELCGIDSVKTIEIINLPSYVTTLVPLSKEGLNEIYRYKVVVNEISDLYAGKIIDLLQMKYFRKEKYNNIRWGVSIISKGNNKCEIYFDAFGECGSVNGINVCFEKNEMIGWIKKEIPLLSQKIGGL
>CP024141.1|AUK02556.1|3885033_3889287_-|type-IV-secretion-protein-Rhs
MGGKPAARQGDMTRKGLDIVQGSAGVLIGAPTGVACSVCPGGITYANPVNPLLGAKVLPGETDLALPGPLPFILSRAYSSYRTRTPAPVGVFGPGWKAPFDIRLQIRDEGLILNDSGGRSIHFEPLFPGEISYSRSESLWLARGGVAAQHSSQPLSALWQVLPEDVRLSPHVYLATNSLQGPWWILSWPERVPGADEVLPPEPPAYRVLTGVVDGFGRTLAFHRAAEGDVAGAVTGVTDGAGRRFHLVLTTQAQRAEVFRKQRATSLSSPAGPRSASSSLVFPDTLPAGTGYGTDNGIRLEAVWLTHDPAYPDEQPTAPLARYTYTAGGELRAVYDRSGTQVRGFTYDAEHAGRMVAHHYAGRPESCYRYDDTGRVTEQVNPEGLDYRFEYGESRVIITDSLNRREVLYTEGEGGLKRVVKKEHADGSITRSEYDEAGRLKAQTDAAGRRTEYSLHMASGAVTAVTGPDGRTVRYGYNSQRQVTSVTYPDGLRSSREYDEKGRLTAETSRSGETTRYSYDDPASELPTGIQDATGSTKQMAWSRYGQLLAFTDCSGYTTRYEYDRYGQQIAVHREEGISTYSSYNPRGQLVSQKDAQGREIRYEYSAAGDLTATISPDGKRSTIEYDKRGRPVSVTEGGLTRSMGYDAAGRITVLTNENGSQSTFRYDPVDRLTEQRGFDGRTQRYHYDLTGKLTQSEDEGLITLWHYDASDRITHRTVNGDPAEQWQYDEHGWLTTLSHTCEGHRVSVHYGYDDKGRLTGERQTVENPETGEMLWEHETGHAYSEQGLATRQEPDGLPPVEWLTYGSGYLAGMKLGGTPLVEYTRDRLHRETARSFGGAGSTAGYEQATAYTLTGQLQSRHLNLPQLDCDYTWNDNGQLVRISGPQECREYRYSGTGRLTGVHTTAANLDIDIPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYVYRYDEYGRLAEKTDRIPEGVIRMHDERTHHYHYDSQHRLVFYTRIQHGEPQVESRYLYDPLGRRTGKRVWRRERDLTGWMSLSRKPEETWYGWDGDRLTTVQTQQTRIQTVYQPGSFTPLLRIETENGEQAKARHRSLAEVLQEDTGVTLPAELAVMLGRLERELRQGSVSEESQQWLAQCGLTAEQMAAQLEAEYIPERKLHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGEESAQHLQQSLRLPGQQYDEESGLYYNRNRYYDPLQGRYITQDPIGLRGEWNLYKYPLNPVRFIDSLGLKFHVNGDPSDFNQAVEYLKQDSQMKETIDFLSSSEETINIEYIEGTNVRFNSNNMAIYWNSRASLFCSTELNSKSQSPALGLGHEFAHAQYYLLDKENFMALLSRTDKKYENKEEARVITIIESRAAKTLGECTRGAHSGLPFYRVDGPLQTMKITGTPE

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Crispr_ID: CP024141_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024141_11

4084713-4084828

Orphan

Consensus_repeat	Method
AACGCCTGATGCGACGCTGACGCGTCTTATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024141_11

>merge|CP024141|11|4084713-4084828|CRISPRCasFinder
AACGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACGCGCTGTGTTTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATC

>CP024141|11|11|4084713-4084828|CRISPRCasFinder
AACGCCTGATGCGACGCTGACGCGTCTTATC	TGGCCTACGCGCTGTGTTTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCATTC
AACGCCTGATGCGACGCTGGCGCGTCTTATC

Protein	Signature genes	Signature genes Name	Protein_function
CP024141.1\|AUK02722.1\|4072728_4073907_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129977
CP024141.1\|AUK02727.1\|4078600_4079299_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
CP024141.1\|AUK02739.1\|4097621_4098443_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
CP024141.1\|AUK02737.1\|4095349_4096636_+\|chaperone-SurA	unknown	unknown	gnl\|CDD\|236758
CP024141.1\|AUK02738.1\|4096635_4097625_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP024141.1\|AUK02729.1\|4081479_4083180_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP024141.1\|AUK02740.1\|4098445_4098823_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP024141.1\|AUK02730.1\|4083190_4084693_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP024141.1\|AUK02735.1\|4091872_4092688_-\|molecular-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
CP024141.1\|AUK02726.1\|4077006_4078617_+\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
CP024141.1\|AUK02725.1\|4076047_4077031_+\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
CP024141.1\|AUK02724.1\|4074228_4075884_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|184188
CP024141.1\|AUK02723.1\|4074008_4074140_-\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203
CP024141.1\|AUK02736.1\|4092942_4095297_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
CP024141.1\|AUK02732.1\|4085662_4088014_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP024141.1\|AUK02733.1\|4088178_4091085_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP024141.1\|AUK02728.1\|4079412_4080177_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
CP024141.1\|AUK02734.1\|4091096_4091756_+\|bifunctional-tRNA-pseudouridine(32)-synthase/ribosomal-large-subunit-pseudouridine-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP024141.1\|AUK02731.1\|4084892_4085588_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP024141.1\|AUK03693.1\|4080262_4081141_-\|arabinose-operon-regulatory-protein	unknown	unknown	gnl\|CDD\|236717

Protein	Function_ID	Function_description	E-value
CP024141.1\|AUK02722.1\|4072728_4073907_-\|MFS-transporter	gnl\|CDD\|129977	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
CP024141.1\|AUK02727.1\|4078600_4079299_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	1.49788e-164
CP024141.1\|AUK02739.1\|4097621_4098443_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.04597e-148
CP024141.1\|AUK02737.1\|4095349_4096636_+\|chaperone-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP024141.1\|AUK02738.1\|4096635_4097625_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP024141.1\|AUK02729.1\|4081479_4083180_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP024141.1\|AUK02740.1\|4098445_4098823_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
CP024141.1\|AUK02730.1\|4083190_4084693_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP024141.1\|AUK02735.1\|4091872_4092688_-\|molecular-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.49529e-169
CP024141.1\|AUK02726.1\|4077006_4078617_+\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
CP024141.1\|AUK02725.1\|4076047_4077031_+\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
CP024141.1\|AUK02724.1\|4074228_4075884_+\|transcriptional-regulator	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
CP024141.1\|AUK02723.1\|4074008_4074140_-\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00206924
CP024141.1\|AUK02736.1\|4092942_4095297_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP024141.1\|AUK02732.1\|4085662_4088014_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP024141.1\|AUK02733.1\|4088178_4091085_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP024141.1\|AUK02728.1\|4079412_4080177_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.3759e-49
CP024141.1\|AUK02734.1\|4091096_4091756_+\|bifunctional-tRNA-pseudouridine(32)-synthase/ribosomal-large-subunit-pseudouridine-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.37214e-159
CP024141.1\|AUK02731.1\|4084892_4085588_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	1.31794e-177
CP024141.1\|AUK03693.1\|4080262_4081141_-\|arabinose-operon-regulatory-protein	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0

>CP024141.1|AUK02730.1|4083190_4084693_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>CP024141.1|AUK02729.1|4081479_4083180_+|ribulokinase
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDTTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPCSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
>CP024141.1|AUK03693.1|4080262_4081141_-|arabinose-operon-regulatory-protein
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>CP024141.1|AUK02728.1|4079412_4080177_-|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGG
>CP024141.1|AUK02727.1|4078600_4079299_+|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTNELLSGKASASALLGITG
>CP024141.1|AUK02726.1|4077006_4078617_+|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>CP024141.1|AUK02725.1|4076047_4077031_+|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>CP024141.1|AUK02724.1|4074228_4075884_+|transcriptional-regulator
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNTTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP
>CP024141.1|AUK02723.1|4074008_4074140_-|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
>CP024141.1|AUK02722.1|4072728_4073907_-|MFS-transporter
MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSWGHFAVYWVIAVISVVALFLTAKVKDV
>CP024141.1|AUK02731.1|4084892_4085588_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRLVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIATGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>CP024141.1|AUK02732.1|4085662_4088014_+|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDIRNGAIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYIRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>CP024141.1|AUK02733.1|4088178_4091085_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>CP024141.1|AUK02734.1|4091096_4091756_+|bifunctional-tRNA-pseudouridine(32)-synthase/ribosomal-large-subunit-pseudouridine-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>CP024141.1|AUK02735.1|4091872_4092688_-|molecular-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQTGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>CP024141.1|AUK02736.1|4092942_4095297_+|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNSL
>CP024141.1|AUK02737.1|4095349_4096636_+|chaperone-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>CP024141.1|AUK02738.1|4096635_4097625_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRTYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPLLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>CP024141.1|AUK02739.1|4097621_4098443_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMSQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES
>CP024141.1|AUK02740.1|4098445_4098823_+|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH

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Crispr_ID: CP024141_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024141_12

4107741-4107873

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of CP024141_12

>merge|CP024141|12|4107741-4107873|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTCCTCACCAATATTGAAAACATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGGATCACCAATATTGAAAG

>CP024141|12|3|4107741-4107873|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGTTC
CTCACCAATATTGAAAA	CATGGCGTAGCAAAAAGAAATTTTCAATATTGCTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP024141.1\|AUK02752.1\|4110939_4112157_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
CP024141.1\|AUK02742.1\|4099749_4100229_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
CP024141.1\|AUK02755.1\|4114683_4115274_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
CP024141.1\|AUK02751.1\|4109668_4110811_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
CP024141.1\|AUK02748.1\|4105923_4106865_-\|protein-FixB	unknown	unknown	gnl\|CDD\|235120
CP024141.1\|AUK02753.1\|4112230_4113784_+\|ATP-dependent-acyl-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
CP024141.1\|AUK02747.1\|4104586_4105873_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
CP024141.1\|AUK02740.1\|4098445_4098823_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP024141.1\|AUK02745.1\|4102913_4104245_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
CP024141.1\|AUK02750.1\|4108123_4109638_+\|L-carnitine/gamma-butyrobetaine-antiporter	unknown	unknown	gnl\|CDD\|179568
CP024141.1\|AUK02746.1\|4104302_4104590_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
CP024141.1\|AUK02756.1\|4115359_4115755_-\|CaiF/GrlA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183154
CP024141.1\|AUK02749.1\|4106879_4107650_-\|protein-FixA	unknown	unknown	gnl\|CDD\|179569
CP024141.1\|AUK02754.1\|4113892_4114678_+\|carnitinyl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|179599
CP024141.1\|AUK02743.1\|4100420_4102283_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
CP024141.1\|AUK02759.1\|4119254_4120403_-\|carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
CP024141.1\|AUK02744.1\|4102275_4102806_-\|glutathione-regulated-potassium-efflux-system-ancillary-protein-KefF	unknown	unknown	gnl\|CDD\|234852
CP024141.1\|AUK02758.1\|4116015_4119237_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
CP024141.1\|AUK02757.1\|4115789_4115972_+\|hypothetical-protein	unknown	unknown	unknown
CP024141.1\|AUK02741.1\|4098829_4099672_+\|diadenosine-tetraphosphatase	unknown	unknown	gnl\|CDD\|273208

Protein	Function_ID	Function_description	E-value
CP024141.1\|AUK02752.1\|4110939_4112157_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
CP024141.1\|AUK02742.1\|4099749_4100229_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
CP024141.1\|AUK02755.1\|4114683_4115274_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	2.12106e-142
CP024141.1\|AUK02751.1\|4109668_4110811_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
CP024141.1\|AUK02748.1\|4105923_4106865_-\|protein-FixB	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
CP024141.1\|AUK02753.1\|4112230_4113784_+\|ATP-dependent-acyl-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
CP024141.1\|AUK02747.1\|4104586_4105873_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
CP024141.1\|AUK02740.1\|4098445_4098823_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
CP024141.1\|AUK02745.1\|4102913_4104245_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4298e-59
CP024141.1\|AUK02750.1\|4108123_4109638_+\|L-carnitine/gamma-butyrobetaine-antiporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
CP024141.1\|AUK02746.1\|4104302_4104590_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	2.23442e-69
CP024141.1\|AUK02756.1\|4115359_4115755_-\|CaiF/GrlA-family-transcriptional-regulator	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	2.96175e-74
CP024141.1\|AUK02749.1\|4106879_4107650_-\|protein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	6.8619e-170
CP024141.1\|AUK02754.1\|4113892_4114678_+\|carnitinyl-CoA-dehydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	1.76707e-178
CP024141.1\|AUK02743.1\|4100420_4102283_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
CP024141.1\|AUK02759.1\|4119254_4120403_-\|carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
CP024141.1\|AUK02744.1\|4102275_4102806_-\|glutathione-regulated-potassium-efflux-system-ancillary-protein-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
CP024141.1\|AUK02758.1\|4116015_4119237_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
CP024141.1\|AUK02741.1\|4098829_4099672_+\|diadenosine-tetraphosphatase	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0

>CP024141.1|AUK02749.1|4106879_4107650_-|protein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>CP024141.1|AUK02748.1|4105923_4106865_-|protein-FixB
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>CP024141.1|AUK02747.1|4104586_4105873_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>CP024141.1|AUK02746.1|4104302_4104590_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQVLELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>CP024141.1|AUK02745.1|4102913_4104245_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>CP024141.1|AUK02744.1|4102275_4102806_-|glutathione-regulated-potassium-efflux-system-ancillary-protein-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>CP024141.1|AUK02743.1|4100420_4102283_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>CP024141.1|AUK02742.1|4099749_4100229_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>CP024141.1|AUK02741.1|4098829_4099672_+|diadenosine-tetraphosphatase
MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGEAAAS
>CP024141.1|AUK02740.1|4098445_4098823_+|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>CP024141.1|AUK02750.1|4108123_4109638_+|L-carnitine/gamma-butyrobetaine-antiporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>CP024141.1|AUK02751.1|4109668_4110811_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>CP024141.1|AUK02752.1|4110939_4112157_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLSTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>CP024141.1|AUK02753.1|4112230_4113784_+|ATP-dependent-acyl-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLLTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATITECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYCDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>CP024141.1|AUK02754.1|4113892_4114678_+|carnitinyl-CoA-dehydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGTEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAVEGPLAFAEKRDPVWKGR
>CP024141.1|AUK02755.1|4114683_4115274_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFHGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>CP024141.1|AUK02756.1|4115359_4115755_-|CaiF/GrlA-family-transcriptional-regulator
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVAEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>CP024141.1|AUK02757.1|4115789_4115972_+|hypothetical-protein
MTRFEAIKQGHIKIVDISIVCNFTVDKCELNPAYVIKNIDSPKDLLNGQKKRSSSENRIT
>CP024141.1|AUK02758.1|4116015_4119237_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>CP024141.1|AUK02759.1|4119254_4120403_-|carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK

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Crispr_ID: CP024141_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024141_13

4353233-4353382

Orphan

Consensus_repeat	Method
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024141_13

>merge|CP024141|13|4353233-4353382|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCATGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

>CP024141|13|12|4353233-4353382|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CAAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCA
TGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP024141.1\|AUK02976.1\|4362305_4362758_-\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
CP024141.1\|AUK02974.1\|4358839_4359256_-\|regulator-of-ribonuclease-activity-B	unknown	unknown	gnl\|CDD\|236876
CP024141.1\|AUK02975.1\|4359417_4360431_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
CP024141.1\|AUK02977.1\|4362902_4363496_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP024141.1\|AUK02966.1\|4347572_4349075_+\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
CP024141.1\|AUK02967.1\|4349235_4350318_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
CP024141.1\|AUK02965.1\|4346496_4347495_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|380489
CP024141.1\|AUK02971.1\|4353992_4356848_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
CP024141.1\|AUK02978.1\|4363566_4364280_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183714
CP024141.1\|AUK02979.1\|4364410_4364806_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100005
CP024141.1\|AUK02973.1\|4358290_4358794_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP024141.1\|AUK02963.1\|4344283_4345048_+\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
CP024141.1\|AUK02968.1\|4350317_4351418_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
CP024141.1\|AUK02972.1\|4356901_4358098_-\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
CP024141.1\|AUK02961.1\|4342448_4343012_-\|thermosensitive-gluconokinase	unknown	unknown	gnl\|CDD\|182097
CP024141.1\|AUK02964.1\|4345110_4346430_+\|gluconate-permease	unknown	unknown	gnl\|CDD\|129873
CP024141.1\|AUK02960.1\|4341425_4342445_+\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
CP024141.1\|AUK02970.1\|4353549_4353993_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
CP024141.1\|AUK02969.1\|4351684_4353196_+\|cytosol-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
CP024141.1\|AUK02962.1\|4343228_4344260_+\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130

Protein	Function_ID	Function_description	E-value
CP024141.1\|AUK02976.1\|4362305_4362758_-\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.50239e-70
CP024141.1\|AUK02974.1\|4358839_4359256_-\|regulator-of-ribonuclease-activity-B	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
CP024141.1\|AUK02975.1\|4359417_4360431_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
CP024141.1\|AUK02977.1\|4362902_4363496_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.0374e-10
CP024141.1\|AUK02966.1\|4347572_4349075_+\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
CP024141.1\|AUK02967.1\|4349235_4350318_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
CP024141.1\|AUK02965.1\|4346496_4347495_+\|transcriptional-regulator	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.4437e-109
CP024141.1\|AUK02971.1\|4353992_4356848_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
CP024141.1\|AUK02978.1\|4363566_4364280_+\|oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	2.9267e-149
CP024141.1\|AUK02979.1\|4364410_4364806_+\|RidA-family-protein	gnl\|CDD\|100005	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	7.9832e-58
CP024141.1\|AUK02973.1\|4358290_4358794_+\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.01499e-18
CP024141.1\|AUK02963.1\|4344283_4345048_+\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
CP024141.1\|AUK02968.1\|4350317_4351418_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
CP024141.1\|AUK02972.1\|4356901_4358098_-\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	1.11898e-150
CP024141.1\|AUK02961.1\|4342448_4343012_-\|thermosensitive-gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126
CP024141.1\|AUK02964.1\|4345110_4346430_+\|gluconate-permease	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
CP024141.1\|AUK02960.1\|4341425_4342445_+\|alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	6.15991e-169
CP024141.1\|AUK02970.1\|4353549_4353993_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	6.6216e-66
CP024141.1\|AUK02969.1\|4351684_4353196_+\|cytosol-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
CP024141.1\|AUK02962.1\|4343228_4344260_+\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0

>CP024141.1|AUK02969.1|4351684_4353196_+|cytosol-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>CP024141.1|AUK02968.1|4350317_4351418_-|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>CP024141.1|AUK02967.1|4349235_4350318_-|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>CP024141.1|AUK02966.1|4347572_4349075_+|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>CP024141.1|AUK02965.1|4346496_4347495_+|transcriptional-regulator
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>CP024141.1|AUK02964.1|4345110_4346430_+|gluconate-permease
MPLIIIAAGVALLLILMIVFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGHYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>CP024141.1|AUK02963.1|4344283_4345048_+|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>CP024141.1|AUK02962.1|4343228_4344260_+|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLRGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>CP024141.1|AUK02961.1|4342448_4343012_-|thermosensitive-gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>CP024141.1|AUK02960.1|4341425_4342445_+|alcohol-dehydrogenase
MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTALSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADY
>CP024141.1|AUK02970.1|4353549_4353993_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTIDGLSAVEQLVCEIAAECWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>CP024141.1|AUK02971.1|4353992_4356848_+|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVVLRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>CP024141.1|AUK02972.1|4356901_4358098_-|DUF898-domain-containing-protein
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLVFVFFYFAILMTVSADMPLVGCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSLKGFWWVTFFLPILMAIGMGTVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIMPSLPFL
>CP024141.1|AUK02973.1|4358290_4358794_+|N-acetyltransferase
MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>CP024141.1|AUK02974.1|4358839_4359256_-|regulator-of-ribonuclease-activity-B
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>CP024141.1|AUK02975.1|4359417_4360431_+|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSKLNN
>CP024141.1|AUK02976.1|4362305_4362758_-|YhcH/YjgK/YiaL-family-protein
MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>CP024141.1|AUK02977.1|4362902_4363496_-|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPLARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQLCATAALAGEAIKTLLKE
>CP024141.1|AUK02978.1|4363566_4364280_+|oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAKRLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGEALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>CP024141.1|AUK02979.1|4364410_4364806_+|RidA-family-protein
MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGTPEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPEKQFEDIMTVKNEIFSAPPYPTWTAVGVTWLAGFDFEIKVIARIPEL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024141_7	7.1\|3063456\|40\|CP024141\|CRISPRCasFinder	3063456-3063495	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
CP024141_12	12.1\|4107758\|42\|CP024141\|PILER-CR	4107758-4107799	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	0	1.0
CP024141_12	12.2\|4107817\|40\|CP024141\|PILER-CR	4107817-4107856	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	1	0.975
CP024141_6	6.1\|2305073\|38\|CP024141\|CRISPRCasFinder	2305073-2305110	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP024141_3	3.11\|1081181\|33\|CP024141\|CRT	1081181-1081213	33	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246936-246968	3	0.909
CP024141_10	10.1\|3874895\|48\|CP024141\|CRISPRCasFinder	3874895-3874942	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4089-4136	3	0.938
CP024141_10	10.1\|3874895\|48\|CP024141\|CRISPRCasFinder	3874895-3874942	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4088-4135	3	0.938
CP024141_10	10.1\|3874895\|48\|CP024141\|CRISPRCasFinder	3874895-3874942	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4088-4135	3	0.938
CP024141_10	10.1\|3874895\|48\|CP024141\|CRISPRCasFinder	3874895-3874942	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4088-4135	3	0.938
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	104-159	4	0.929
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_MG299151	Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence	51276-51307	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_KY471628	Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence	45716-45747	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_MG299131	Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence	51276-51307	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_KY471629	Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence	45716-45747	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_MG299133	Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence	51276-51307	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_MG299128	Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence	51276-51307	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_MG299147	Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence	51276-51307	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NC_018995	Escherichia coli plasmid pHUSEC41-1, complete sequence	29015-29046	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	78292-78323	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	39563-39594	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	KU932021	Escherichia coli plasmid pEC3I, complete sequence	51902-51933	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_CP024154	Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence	18560-18591	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NC_011754	Escherichia coli ED1a plasmid pECOED, complete sequence	49240-49271	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	81434-81465	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_LR213460	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3	28916-28947	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_MH287044	Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence	36182-36213	7	0.781
CP024141_2	2.7\|1053679\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053679-1053710	32	NZ_MH618673	Escherichia coli strain 838B plasmid p838B-R, complete sequence	32230-32261	7	0.781
CP024141_2	2.6\|1053618\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053618-1053649	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1417960-1417991	8	0.75
CP024141_3	3.4\|1081060\|32\|CP024141\|PILER-CR	1081060-1081091	32	MK448454	Streptococcus satellite phage Javan361, complete genome	9192-9223	8	0.75
CP024141_3	3.11\|1081181\|33\|CP024141\|CRT	1081181-1081213	33	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1428097-1428129	8	0.758
CP024141_4	4.1\|1629845\|34\|CP024141\|CRISPRCasFinder	1629845-1629878	34	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15030-15063	9	0.735
CP024141_2	2.1\|1053313\|32\|CP024141\|PILER-CR,CRISPRCasFinder,CRT	1053313-1053344	32	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	51062-51093	10	0.688
CP024141_3	3.1\|1080877\|32\|CP024141\|PILER-CR	1080877-1080908	32	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	244686-244717	10	0.688
CP024141_3	3.1\|1080877\|32\|CP024141\|PILER-CR	1080877-1080908	32	GU075905	Prochlorococcus phage P-HM2, complete genome	78536-78567	10	0.688
CP024141_3	3.6\|1080876\|33\|CP024141\|CRT	1080876-1080908	33	GU075905	Prochlorococcus phage P-HM2, complete genome	78535-78567	10	0.697
CP024141_3	3.11\|1081181\|33\|CP024141\|CRT	1081181-1081213	33	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	141278-141310	10	0.697
CP024141_4	4.1\|1629845\|34\|CP024141\|CRISPRCasFinder	1629845-1629878	34	NZ_CP010859	Marinovum algicola DG 898 plasmid pMaD4, complete sequence	3636-3669	10	0.706
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4157-4212	10	0.821
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4156-4211	10	0.821
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	115797-115852	10	0.821
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4156-4211	10	0.821
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4156-4211	10	0.821
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229185-229240	11	0.804
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239679-239734	11	0.804
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230591-230646	11	0.804
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211561-211616	11	0.804
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229286-229341	12	0.786
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239780-239835	12	0.786
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230692-230747	12	0.786
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211662-211717	12	0.786
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229084-229139	13	0.768
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239578-239633	13	0.768
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230490-230545	13	0.768
CP024141_5	5.1\|1856282\|56\|CP024141\|CRISPRCasFinder	1856282-1856337	56	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211460-211515	13	0.768

1. spacer 7.1|3063456|40|CP024141|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 12.1|4107758|42|CP024141|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0

tgtcacacgcagataaatccaactttcaatattgttaagttc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
******************************************

3. spacer 12.2|4107817|40|CP024141|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *****************************

4. spacer 6.1|2305073|38|CP024141|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

5. spacer 3.11|1081181|33|CP024141|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.909

gggcgcactggatgcgatgatggatatcactta	CRISPR spacer
ggacgcactggatgcgatgatggacatcacttg	Protospacer
**.*********************.*******.

6. spacer 10.1|3874895|48|CP024141|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

7. spacer 10.1|3874895|48|CP024141|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

8. spacer 10.1|3874895|48|CP024141|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

9. spacer 10.1|3874895|48|CP024141|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 3, identity: 0.938

tcagcgtcgcatcaggcatctgcgcataaccgccggatgcggcgtaaa	CRISPR spacer
ccagcgtcgcatcaggcatctgcgcataactgccggatgcggcataaa	Protospacer
.*****************************.************.****

10. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 4, identity: 0.929

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt	CRISPR spacer
acgatcgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt	Protospacer
 .** .**************************************************

11. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

12. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

13. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

14. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

15. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

16. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

17. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

18. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

19. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

20. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

21. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

22. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

23. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

24. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

25. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

26. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

27. spacer 2.7|1053679|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

28. spacer 2.6|1053618|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tcaacgcgctcagacgttgcgtgagtgaacca	CRISPR spacer
acaacgcggtcggacgttgcgtgattaccccg	Protospacer
 ******* **.************ *.  **.

29. spacer 3.4|1081060|32|CP024141|PILER-CR matches to MK448454 (Streptococcus satellite phage Javan361, complete genome) position: , mismatch: 8, identity: 0.75

tccgtttggtccaccaaatgtttgatgcttca	CRISPR spacer
tcttatcaatccaccaaatttttgattcttca	Protospacer
**.  *...********** ****** *****

30. spacer 3.11|1081181|33|CP024141|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.758

gggcgcactggatgcgatgatggata---tcactta	CRISPR spacer
gggcgcactggaagcggtgatggaggggcgcac---	Protospacer
************ ***.******* .    ***

31. spacer 4.1|1629845|34|CP024141|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 9, identity: 0.735

tgcatccggcacccggagcctgatgcgacgctgg	CRISPR spacer
atcaacaattaccaggtgcctgatgcgacgctgg	Protospacer
  ** * . .*** ** *****************

32. spacer 2.1|1053313|32|CP024141|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 10, identity: 0.688

tccacgctgtaacggccatcattaagtttagt	CRISPR spacer
ccgctgctgtgacgcccatcattaagttactc	Protospacer
.*  .*****.*** *************   .

33. spacer 3.1|1080877|32|CP024141|PILER-CR matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

acggacaaaatatatattgatttgcgaattat	CRISPR spacer
tgaggcaaaatatagattgatttccgaaaata	Protospacer
  .*.********* ******** ****

34. spacer 3.1|1080877|32|CP024141|PILER-CR matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 10, identity: 0.688

acggacaaaatatatattgatttgcgaattat	CRISPR spacer
acggaaaaattatatattgattttacttctgg	Protospacer
***** *** *************     .*.

35. spacer 3.6|1080876|33|CP024141|CRT matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 10, identity: 0.697

gacggacaaaatatatattgatttgcgaattat	CRISPR spacer
gacggaaaaattatatattgattttacttctgg	Protospacer
****** *** *************     .*.

36. spacer 3.11|1081181|33|CP024141|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 10, identity: 0.697

gggcgcactggatgcgatgatggatatcactta	CRISPR spacer
cggcgcactggaaccgatgatggatgcgatgag	Protospacer
 ***********  ***********.. *.  .

37. spacer 4.1|1629845|34|CP024141|CRISPRCasFinder matches to NZ_CP010859 (Marinovum algicola DG 898 plasmid pMaD4, complete sequence) position: , mismatch: 10, identity: 0.706

tgcatccggcacccggagcctgatgcgacgctgg	CRISPR spacer
tgtcgaaggcacccgcaccctgatgcgacgcgcc	Protospacer
**.    ******** * *************

38. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.821

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acaactgccggatgcggcgtgaacgccttatccgtcctaccgttcag-gcacaagtt	Protospacer
 ..* *********************************** **** * ** *..**

39. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.821

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acaactgccggatgcggcgtgaacgccttatccgtcctaccgttcag-gcacaagtt	Protospacer
 ..* *********************************** **** * ** *..**

40. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 10, identity: 0.821

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acaactgccggatgcggcgtgaacgccttatccgtcctaccgttcag-gcacaagtt	Protospacer
 ..* *********************************** **** * ** *..**

41. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.821

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acaactgccggatgcggcgtgaacgccttatccgtcctaccgttcag-gcacaagtt	Protospacer
 ..* *********************************** **** * ** *..**

42. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.821

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acaactgccggatgcggcgtgaacgccttatccgtcctaccgttcag-gcacaagtt	Protospacer
 ..* *********************************** **** * ** *..**

43. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.804

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ***************************** ******* *    ** ****

44. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.804

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ***************************** ******* *    ** ****

45. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.804

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ***************************** ******* *    ** ****

46. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.804

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ***************************** ******* *    ** ****

47. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.786

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacgggt-ggcgcgagaatt	Protospacer
 .** ***************************** ******* *  *.**  *..*

48. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.786

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacgggt-ggcgcgagaatt	Protospacer
 .** ***************************** ******* *  *.**  *..*

49. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.786

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacgggt-ggcgcgagaatt	Protospacer
 .** ***************************** ******* *  *.**  *..*

50. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.786

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacgggt-ggcgcgagaatt	Protospacer
 .** ***************************** ******* *  *.**  *..*

51. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.768

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat-ggcgtgagaatt	Protospacer
 .** ***************************** ******* *  *.*.  *..*

52. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.768

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat-ggcgtgagaatt	Protospacer
 .** ***************************** ******* *  *.*.  *..*

53. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.768

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat-ggcgtgagaatt	Protospacer
 .** ***************************** ******* *  *.*.  *..*

54. spacer 5.1|1856282|56|CP024141|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.768

ctgaatgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcgggt-	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat-ggcgtgagaatt	Protospacer
 .** ***************************** ******* *  *.*.  *..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1088606 : 1101789

Escherichia_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUJ99950.1\|1088606_1089368_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0
AUJ99951.1\|1089361_1089988_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
AUJ99952.1\|1090127_1091267_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
AUJ99953.1\|1091329_1092322_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
AUJ99954.1\|1092415_1093780_-	GntP family transporter	NA	NA	NA	NA
AUJ99955.1\|1093868_1094645_-	hypothetical protein	NA	NA	NA	NA
AUJ99956.1\|1094649_1095288_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
AUJ99957.1\|1095284_1096547_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
AUJ99958.1\|1096543_1097452_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
AUJ99959.1\|1097647_1098415_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
AUJ99960.1\|1098465_1099122_-	serine/threonine protein phosphatase	A0A222YWF0	Escherichia_phage	8.0e-49	46.3
AUJ99961.1\|1099227_1101789_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6

DBSCAN-SWA_2

1181859 : 1188675

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK00036.1\|1181859_1184193_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	99.0
AUK00037.1\|1184207_1184528_-	hypothetical protein	NA	NA	NA	NA
AUK00038.1\|1184663_1185119_-	hypothetical protein	Q7M298	Enterobacteria_phage	4.7e-64	98.2
AUK00039.1\|1185111_1185399_-	Derepression protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
AUK00040.1\|1185391_1185982_-	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.5e-59	88.8
AUK00041.1\|1185978_1186245_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
AUK00042.1\|1186797_1187532_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	3.6e-130	99.2
AUK00043.1\|1187528_1188029_+	transactivation protein	NA	NA	NA	NA
AUK00044.1\|1188102_1188675_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.2e-95	97.3

DBSCAN-SWA_3

1251214 : 1291118

Salmonella_phage(57.14%)

tail,holin,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK00107.1\|1251214_1252609_-	ATP-dependent helicase	Q3LZN8	Bacteriophage	1.6e-208	73.1
AUK00108.1\|1252682_1253480_+	hypothetical protein	NA	NA	NA	NA
AUK00109.1\|1253492_1253780_-	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	4.5e-28	66.3
AUK00110.1\|1253779_1253974_-	hypothetical protein	NA	NA	NA	NA
AUK00111.1\|1254208_1254970_-	DNA-binding protein	NA	NA	NA	NA
AUK00112.1\|1255034_1257098_-	DNA polymerase	Q775A3	Bordetella_phage	3.3e-274	67.1
AUK00113.1\|1257144_1257774_+	hypothetical protein	NA	NA	NA	NA
AUK00114.1\|1257826_1258375_-	DUF2815 domain-containing protein	Q775A5	Bordetella_phage	2.1e-66	65.9
AUK00115.1\|1258390_1259692_-	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	1.4e-132	55.7
AUK00116.1\|1259694_1260597_-	hypothetical protein	Q3LZP9	Bacteriophage	6.1e-07	54.4
AUK00117.1\|1261376_1262000_-	DNA-binding protein	A0A1I9KG86	Aeromonas_phage	4.3e-36	44.8
AUK00118.1\|1262120_1262333_+	XRE family transcriptional regulator	A0A0R6PHL1	Moraxella_phage	7.9e-06	42.9
AUK00119.1\|1262336_1264523_+	replication protein	B6SCY1	Bacteriophage	1.4e-174	72.7
AUK00120.1\|1264812_1265235_+	antitermination protein	Q8W638	Enterobacteria_phage	4.0e-41	63.3
AUK00121.1\|1265266_1265608_+	hypothetical protein	NA	NA	NA	NA
AUK00122.1\|1266053_1266395_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.8e-53	91.9
AUK00123.1\|1266398_1266875_+	lysozyme	Q8SBE0	Shigella_phage	2.1e-86	96.2
AUK00124.1\|1266858_1267383_+	hypothetical protein	K7P6W1	Enterobacteria_phage	4.5e-42	66.9
AUK00125.1\|1267444_1268017_+\|terminase	terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	1.4e-60	69.6
AUK00126.1\|1268019_1269642_+	TerL protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	95.6
AUK00127.1\|1269641_1271108_+	hypothetical protein	A0A0M4S6U1	Salmonella_phage	6.7e-261	91.8
AUK00128.1\|1271202_1271733_+\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	1.2e-82	85.1
AUK00129.1\|1271747_1272968_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-202	88.8
AUK00130.1\|1272971_1273478_+	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	9.2e-69	78.7
AUK00131.1\|1273489_1274431_+	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	1.8e-155	86.6
AUK00132.1\|1274472_1274694_+	hypothetical protein	A0A0M4RTX5	Salmonella_phage	7.7e-12	68.6
AUK00133.1\|1274659_1275067_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	1.4e-67	93.3
AUK00134.1\|1275063_1275618_+	hypothetical protein	A0A0M4S631	Salmonella_phage	3.0e-65	70.7
AUK00135.1\|1275604_1275994_+\|head,tail	head-tail adaptor	A0A0M3ULK0	Salmonella_phage	5.6e-66	95.3
AUK00136.1\|1275968_1276532_+	hypothetical protein	A0A0M4R331	Salmonella_phage	1.3e-79	75.7
AUK00137.1\|1276535_1277681_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.8e-160	73.8
AUK00138.1\|1277691_1278132_+	DUF3277 domain-containing protein	A0A2H4J619	uncultured_Caudovirales_phage	7.0e-57	75.3
AUK00139.1\|1278135_1278588_+	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.8e-55	72.0
AUK00140.1\|1278599_1278776_+	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	1.6e-12	70.0
AUK00141.1\|1278765_1280751_+	lytic transglycosylase catalytic	A0A0M4REK7	Salmonella_phage	2.6e-175	53.5
AUK00142.1\|1280750_1281338_+	hypothetical protein	A0A0M3ULD5	Salmonella_phage	1.3e-82	87.4
AUK00143.1\|1281337_1281640_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	2.2e-49	92.0
AUK00144.1\|1281642_1282707_+	hypothetical protein	A0A0M4QX01	Salmonella_phage	3.2e-156	81.1
AUK00145.1\|1282706_1283042_+	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.7e-23	71.2
AUK00146.1\|1283038_1283551_+	hypothetical protein	NA	NA	NA	NA
AUK00147.1\|1283611_1284364_+	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	2.2e-87	65.9
AUK00148.1\|1284363_1284717_+	hypothetical protein	A0A0M4R339	Salmonella_phage	1.2e-54	89.7
AUK00149.1\|1284716_1285916_+	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.4e-186	84.1
AUK00150.1\|1285912_1286593_+	hypothetical protein	A0A0M5M1K4	Salmonella_phage	1.9e-101	77.9
AUK00151.1\|1286574_1287660_+	hypothetical protein	A0A0M3ULD8	Salmonella_phage	6.0e-57	68.7
AUK00152.1\|1287659_1288073_+\|tail	phage tail protein	U5P0S4	Shigella_phage	1.4e-22	77.3
AUK00153.1\|1288558_1289224_-	hypothetical protein	NA	NA	NA	NA
AUK00154.1\|1289385_1289700_+	resolvase	A0A1S6L009	Salmonella_phage	4.3e-40	91.0
AUK00155.1\|1289704_1290550_-	hypothetical protein	NA	NA	NA	NA
AUK00156.1\|1290851_1291118_-	hypothetical protein	A0A0M3ULK3	Salmonella_phage	5.0e-34	79.5

DBSCAN-SWA_4

1758127 : 1767568

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK00566.1\|1758127_1759054_+	ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	30.8
AUK00567.1\|1759058_1759790_+	osmoprotectant uptake system permease	NA	NA	NA	NA
AUK00568.1\|1759770_1759878_-	hypothetical protein	NA	NA	NA	NA
AUK00569.1\|1759937_1760669_-	transcriptional regulator	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
AUK00570.1\|1760890_1762576_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AUK00571.1\|1762572_1763292_+	DNA-binding response regulator	NA	NA	NA	NA
AUK00572.1\|1763338_1763809_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	5.2e-82	100.0
AUK00573.1\|1763848_1764310_-	hypothetical protein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
AUK00574.1\|1764434_1766435_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
AUK00575.1\|1766431_1767568_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7

DBSCAN-SWA_5

1923641 : 2014343

Escherichia_phage(45.1%)

head,protease,tail,holin,portal,terminase,integrase,capsid,transposase

attL 1954254:1954269|attR 1985535:1985550

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK00704.1\|1923641_1924664_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	7.0e-201	99.7
AUK00705.1\|1924660_1925443_+\|transposase	transposase	A0A2L1IVB6	Escherichia_phage	1.0e-138	99.6
AUK00706.1\|1925683_1925899_-	hypothetical protein	NA	NA	NA	NA
AUK00707.1\|1926371_1926989_-	hypothetical protein	NA	NA	NA	NA
AUK00708.1\|1927067_1927346_-	AlpA family phage regulatory protein	NA	NA	NA	NA
AUK00709.1\|1927448_1927682_+	hypothetical protein	NA	NA	NA	NA
AUK00710.1\|1927649_1927973_-	hypothetical protein	NA	NA	NA	NA
AUK00711.1\|1928406_1928601_-	hypothetical protein	NA	NA	NA	NA
AUK00712.1\|1928763_1929369_+	inovirus Gp2 family protein	NA	NA	NA	NA
AUK00713.1\|1929622_1930030_+	hypothetical protein	NA	NA	NA	NA
AUK00714.1\|1929930_1930428_+	hypothetical protein	NA	NA	NA	NA
AUK00715.1\|1934805_1935564_-	cytoplasmic protein	NA	NA	NA	NA
AUK00716.1\|1938571_1938694_+	cobalamin biosynthesis protein	NA	NA	NA	NA
AUK00717.1\|1938845_1939391_+	adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase	NA	NA	NA	NA
AUK00718.1\|1939387_1940131_+	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
AUK00719.1\|1940142_1941222_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
AUK00720.1\|1941286_1942219_+	L,D-transpeptidase	NA	NA	NA	NA
AUK00721.1\|1942676_1943594_+	nitrogen assimilation transcriptional regulator	NA	NA	NA	NA
AUK00722.1\|1943695_1944646_+	transcriptional regulator Cbl	NA	NA	NA	NA
AUK00723.1\|1944919_1946407_+	FMN/FAD transporter	NA	NA	NA	NA
AUK00724.1\|1947033_1947750_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AUK00725.1\|1948092_1949547_-	AMP nucleosidase	NA	NA	NA	NA
AUK00726.1\|1949648_1950965_-	MFS transporter	NA	NA	NA	NA
AUK00727.1\|1951279_1952332_+	hypothetical protein	NA	NA	NA	NA
AUK00728.1\|1952593_1956631_-	Invasin	NA	NA	NA	NA
1954254:1954269	attL	NA	NA	NA	NA
AUK03597.1\|1961063_1961861_-	protein MtfA	NA	NA	NA	NA
AUK00729.1\|1962096_1963122_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	3.4e-102	57.9
AUK00730.1\|1963121_1963325_-	DUF4224 domain-containing protein	NA	NA	NA	NA
AUK00731.1\|1963383_1965825_-	exonuclease	V5UQJ3	Shigella_phage	2.9e-112	46.8
AUK00732.1\|1965918_1966110_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AUK00733.1\|1966106_1966295_-	cell division inhibition protein DicB	NA	NA	NA	NA
AUK00734.1\|1966862_1967081_-	hypothetical protein	NA	NA	NA	NA
AUK00735.1\|1967110_1967239_-	hypothetical protein	NA	NA	NA	NA
AUK03598.1\|1967240_1967396_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	3.4e-06	48.9
AUK00736.1\|1967693_1968113_-	transcriptional regulator	A0A2I6PIE7	Escherichia_phage	4.2e-19	47.5
AUK00737.1\|1968192_1968447_+	hypothetical protein	A0A2I6PIE5	Escherichia_phage	2.8e-18	60.3
AUK00738.1\|1968443_1968869_+	Rha family transcriptional regulator	NA	NA	NA	NA
AUK00739.1\|1968940_1970017_+	phage replisome organizer	A0A088CD36	Shigella_phage	1.5e-63	65.7
AUK00740.1\|1970057_1970468_+	DUF977 domain-containing protein	A0A0U2QQN3	Escherichia_phage	1.2e-63	91.2
AUK00741.1\|1970537_1970894_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	6.7e-58	97.5
AUK00742.1\|1971018_1971201_+	hypothetical protein	A0A1I9LJM4	Stx_converting_phage	6.1e-23	92.6
AUK00743.1\|1971197_1971389_+	hypothetical protein	A0A0F6R8N3	Escherichia_coli_O157_typing_phage	3.3e-27	93.7
AUK03599.1\|1971330_1971606_+	hypothetical protein	Q9XJH3	Enterobacteria_phage	1.5e-44	94.4
AUK00744.1\|1971607_1971826_+	sugar acetyltransferase inhibitor	A0A1I9LJM2	Stx_converting_phage	5.2e-29	88.9
AUK00745.1\|1971827_1972091_+	hypothetical protein	A0A2P0P958	Salmonella_phage	1.5e-30	71.3
AUK00746.1\|1972101_1972446_+	hypothetical protein	A0A2R2Z2X8	Escherichia_phage	7.4e-54	92.1
AUK00747.1\|1972645_1972936_+	hypothetical protein	NA	NA	NA	NA
AUK00748.1\|1974076_1974289_+	type I toxin-antitoxin system hok family toxin	A0A0U2QV81	Escherichia_phage	2.0e-17	68.6
AUK00749.1\|1974432_1974825_+	hypothetical protein	NA	NA	NA	NA
AUK00750.1\|1975121_1975400_+	hypothetical protein	NA	NA	NA	NA
AUK00751.1\|1975401_1976451_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	2.1e-107	54.0
AUK00752.1\|1976463_1976823_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	8.3e-40	67.5
AUK00753.1\|1976819_1977509_+	antiterminator	I6PDF8	Cronobacter_phage	5.8e-58	49.8
AUK00754.1\|1978670_1979063_+\|holin	holin	Q9MBZ5	Enterobacteria_phage	3.4e-55	90.0
AUK03600.1\|1979052_1979328_+\|holin	phage holin family protein	Q9MBZ4	Enterobacteria_phage	7.2e-44	96.7
AUK00755.1\|1979330_1979708_+	peptidase M15	Q9MBZ3	Enterobacteria_phage	1.3e-64	98.4
AUK00756.1\|1980140_1980350_-	hypothetical protein	NA	NA	NA	NA
AUK00757.1\|1980771_1981122_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	6.2e-64	97.4
AUK00758.1\|1981270_1981753_+\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	5.7e-84	97.5
AUK00759.1\|1981752_1983510_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.7
AUK00760.1\|1983521_1983704_+	hypothetical protein	A0A1B5FP99	Escherichia_phage	1.1e-24	96.7
AUK00761.1\|1983703_1984945_+\|portal	phage portal protein	U5P411	Shigella_phage	5.9e-242	99.5
AUK00762.1\|1984886_1985573_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	1.1e-125	100.0
1985535:1985550	attR	NA	NA	NA	NA
AUK00763.1\|1985587_1986793_+\|capsid	phage major capsid protein	U5P0G9	Shigella_phage	1.3e-222	99.0
AUK00764.1\|1986844_1987033_+	hypothetical protein	A0A1B5FP98	Escherichia_phage	2.7e-26	98.4
AUK00765.1\|1987044_1987350_+\|head,tail	phage gp6-like head-tail connector protein	A0A1B5FP86	Escherichia_phage	1.7e-38	80.2
AUK00766.1\|1987358_1987697_+\|head,tail	head-tail adaptor protein	A0A1B5FP90	Escherichia_phage	3.5e-56	98.2
AUK00767.1\|1987693_1988143_+	hypothetical protein	S4TR46	Salmonella_phage	6.1e-64	81.2
AUK00768.1\|1988139_1988484_+	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	1.2e-56	99.1
AUK00769.1\|1988544_1989249_+\|tail	phage tail protein	A0A1B5FP82	Escherichia_phage	2.8e-116	94.9
AUK00770.1\|1989248_1989635_+\|tail	phage tail protein	A0A1B5FP91	Escherichia_phage	6.8e-64	100.0
AUK03601.1\|1989676_1989937_+	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	3.5e-40	97.7
AUK00771.1\|1989982_1993210_+\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	95.7
AUK00772.1\|1993187_1993544_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	1.4e-39	65.8
AUK00773.1\|1993543_1994242_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	4.4e-130	96.6
AUK00774.1\|1994246_1994990_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	6.4e-143	93.1
AUK00775.1\|1994887_1995535_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.8e-110	96.3
AUK00776.1\|1995595_1998991_+	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	89.9
AUK00777.1\|1999059_1999659_+	Ail/Lom family protein	A0A0P0ZCF6	Stx2-converting_phage	4.8e-109	97.0
AUK00778.1\|1999723_2002999_+\|tail	phage tail protein	K7PGT9	Enterobacteria_phage	4.6e-302	71.0
AUK00779.1\|2003053_2003179_+\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	2.3e-13	87.5
AUK00780.1\|2004403_2004646_-	hypothetical protein	NA	NA	NA	NA
AUK00781.1\|2004668_2005199_-	cytochrome b561	A0A0U2QLA7	Escherichia_phage	1.9e-56	100.0
AUK00782.1\|2005541_2006192_-	metal-binding protein ZinT	NA	NA	NA	NA
AUK00783.1\|2006448_2007084_-	sulfoxide reductase heme-binding subunit YedZ	NA	NA	NA	NA
AUK00784.1\|2007084_2008089_-	mononuclear molybdenum enzyme YedY	NA	NA	NA	NA
AUK00785.1\|2008197_2008611_-	5-hydroxyisourate hydrolase	NA	NA	NA	NA
AUK03602.1\|2008743_2009415_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	5.4e-32	35.2
AUK00786.1\|2009414_2010773_+	two-component sensor histidine kinase	Q8QKV7	Ectocarpus_siliculosus_virus	2.3e-05	20.5
AUK00787.1\|2010870_2011722_-	Molecular chaperone Hsp31 and glyoxalase 3	NA	NA	NA	NA
AUK00788.1\|2013191_2014343_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.5e-42	35.6

DBSCAN-SWA_6

2390998 : 2445675

Enterobacteria_phage(37.25%)

head,tail,portal,terminase,integrase,capsid,lysis,transposase

attL 2386288:2386303|attR 2418717:2418732

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2386288:2386303	attL	NA	NA	NA	NA
AUK01158.1\|2390998_2393425_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.7e-214	49.0
AUK01159.1\|2393623_2393929_-	DUF1161 domain-containing protein	NA	NA	NA	NA
AUK01160.1\|2394036_2394747_+	YnfC family lipoprotein	NA	NA	NA	NA
AUK01161.1\|2394749_2395310_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
AUK01162.1\|2395344_2395686_-	hypothetical protein	NA	NA	NA	NA
AUK01163.1\|2395820_2396147_+	hypothetical protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
AUK01164.1\|2396183_2396372_+	hypothetical protein	NA	NA	NA	NA
AUK01165.1\|2396352_2397567_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
AUK01166.1\|2397578_2398598_+	starvation-sensing protein RspB	E3SJ82	Synechococcus_phage	9.7e-17	25.9
AUK01167.1\|2398655_2398766_+	transporter	NA	NA	NA	NA
AUK01168.1\|2398785_2400081_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	4.8e-154	61.8
AUK01169.1\|2400100_2400352_-	DNA-binding protein	S4TND0	Salmonella_phage	2.2e-15	50.0
AUK01170.1\|2400424_2402896_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	56.7
AUK01171.1\|2402988_2403180_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AUK01172.1\|2403176_2403365_-	division inhibition protein DicB	NA	NA	NA	NA
AUK01173.1\|2403932_2404151_-	hypothetical protein	NA	NA	NA	NA
AUK01174.1\|2404180_2404351_-	hypothetical protein	NA	NA	NA	NA
AUK01175.1\|2404310_2404466_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	3.0e-07	53.2
AUK01176.1\|2404632_2405040_-	transcriptional regulator	K7PM82	Enterobacteria_phage	4.4e-13	54.7
AUK01177.1\|2405123_2405354_+	division inhibition gene dicB repressor	NA	NA	NA	NA
AUK01178.1\|2405337_2405859_+	hypothetical protein	NA	NA	NA	NA
AUK01179.1\|2405785_2406805_+	hypothetical protein	U5P0A0	Shigella_phage	2.4e-55	60.2
AUK01180.1\|2406845_2407268_+	DUF977 domain-containing protein	A0A0U2QQN3	Escherichia_phage	4.4e-64	92.0
AUK01181.1\|2407264_2407621_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-38	69.6
AUK01182.1\|2408773_2408953_+	hypothetical protein	NA	NA	NA	NA
AUK01183.1\|2408927_2409110_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	6.3e-12	74.5
AUK01184.1\|2409287_2410601_+\|transposase	transposase	NA	NA	NA	NA
AUK01185.1\|2411037_2411370_-	protein FlxA	NA	NA	NA	NA
AUK01186.1\|2411572_2411878_-	hypothetical protein	NA	NA	NA	NA
AUK01187.1\|2411902_2412142_+	antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
AUK01188.1\|2412141_2412429_+	mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
AUK01189.1\|2412500_2412656_+	protein HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
AUK01190.1\|2412872_2413124_+	hypothetical protein	NA	NA	NA	NA
AUK01191.1\|2413190_2413469_+	hypothetical protein	NA	NA	NA	NA
AUK01192.1\|2413470_2414520_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.3e-112	57.3
AUK01193.1\|2414533_2415286_+	antitermination protein Q	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
AUK01194.1\|2415707_2415920_-	cold-shock protein CspF	NA	NA	NA	NA
AUK01195.1\|2416220_2416436_+	cold-shock protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
AUK01196.1\|2417189_2417405_+\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.1e-31	94.4
AUK01197.1\|2417409_2417721_+	hypothetical protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
AUK01198.1\|2417717_2418251_+	lysozyme from lambdoid prophage Qin	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
AUK01199.1\|2418247_2418745_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
2418717:2418732	attR	NA	NA	NA	NA
AUK01200.1\|2419107_2419320_+	cold-shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
AUK01201.1\|2419330_2419519_+	cold-shock protein	NA	NA	NA	NA
AUK03622.1\|2419666_2419822_+	hypothetical protein	NA	NA	NA	NA
AUK01202.1\|2419993_2420167_+	protein GnsB	NA	NA	NA	NA
AUK01203.1\|2420318_2420729_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.5e-56	79.4
AUK01204.1\|2420786_2421020_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	84.1
AUK01205.1\|2421408_2421954_+\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	4.7e-95	99.4
AUK01206.1\|2421928_2423854_+\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.4
AUK01207.1\|2423850_2424057_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
AUK01208.1\|2424053_2425655_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.3e-310	99.4
AUK01209.1\|2425635_2426955_+\|capsid	capsid assembly protein	A0A2I6TC87	Escherichia_phage	4.0e-233	98.4
AUK01210.1\|2426964_2427297_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.5e-54	98.2
AUK01211.1\|2427352_2428378_+\|capsid	major capsid protein E	C6ZCY2	Enterobacteria_phage	3.1e-188	97.7
AUK01212.1\|2428419_2428815_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	1.1e-58	95.5
AUK01213.1\|2428826_2429180_+\|tail	phage tail protein	A0A2R9YJJ5	Escherichia_phage	6.4e-61	97.4
AUK01214.1\|2429191_2429770_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	99.5
AUK01215.1\|2429766_2430162_+\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	8.5e-70	98.5
AUK03623.1\|2430169_2430910_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	5.2e-129	97.2
AUK01216.1\|2430925_2431348_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-60	85.7
AUK01217.1\|2431329_2431764_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
AUK01218.1\|2431756_2434318_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	95.1
AUK01219.1\|2434314_2434644_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	1.8e-57	96.3
AUK01220.1\|2434643_2435342_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.1e-132	98.7
AUK01221.1\|2435347_2436091_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.4e-144	94.3
AUK01222.1\|2435988_2436630_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.9e-96	86.5
AUK01223.1\|2436690_2440170_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.2
AUK01224.1\|2440237_2440837_+	Ail/Lom family protein	H6WZM8	Escherichia_phage	2.3e-103	92.5
AUK01225.1\|2440901_2443862_+	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	1.4e-52	53.6
AUK01226.1\|2443861_2444437_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
AUK01227.1\|2444534_2445125_-	DNA invertase	A0A0A7NPV4	Enterobacteria_phage	7.3e-25	38.8
AUK01228.1\|2445441_2445675_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3

DBSCAN-SWA_7

2608061 : 2627888

Enterobacteria_phage(22.22%)

protease,portal,terminase,capsid,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK01361.1\|2608061_2610074_-\|capsid	major capsid protein	G8EXZ9	Synechococcus_phage	4.8e-28	24.6
AUK01362.1\|2610118_2611630_-\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	7.8e-31	27.2
AUK01363.1\|2611640_2612135_-	hypothetical protein	NA	NA	NA	NA
AUK01364.1\|2612207_2614112_-\|terminase	terminase	A0A2H4J898	uncultured_Caudovirales_phage	4.7e-41	26.5
AUK01365.1\|2614199_2614805_+	hypothetical protein	NA	NA	NA	NA
AUK01366.1\|2614839_2615064_+	hypothetical protein	NA	NA	NA	NA
AUK01367.1\|2615146_2615974_-	hypothetical protein	Q8W645	Enterobacteria_phage	1.5e-20	37.5
AUK01368.1\|2616334_2616802_-	hypothetical protein	NA	NA	NA	NA
AUK01369.1\|2617168_2618331_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.4e-51	40.6
AUK01370.1\|2619804_2620359_-	hypothetical protein	NA	NA	NA	NA
AUK01371.1\|2620717_2621497_+	DUF1311 domain-containing protein	A7XFN5	Enterobacteria_phage	1.8e-87	67.9
AUK03635.1\|2621729_2622059_-	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PH90	Moraxella_phage	1.1e-22	52.5
AUK01372.1\|2622480_2622711_+	DUF2554 domain-containing protein	NA	NA	NA	NA
AUK01373.1\|2622802_2624764_-\|protease	collagenase-like protease	Q6DW11	Phage_TP	2.7e-23	28.3
AUK01374.1\|2624836_2625373_-	XRE family transcriptional regulator	NA	NA	NA	NA
AUK01375.1\|2625425_2626640_+	BenE family transporter YdcO	NA	NA	NA	NA
AUK01376.1\|2626679_2627888_-\|transposase	transposase	A0A077SL42	Escherichia_phage	1.6e-207	93.0

DBSCAN-SWA_8

2689616 : 2745342

Escherichia_phage(52.08%)

tail,tRNA,coat,terminase,integrase,lysis,transposase

attL 2708529:2708545|attR 2750943:2750959

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK01432.1\|2689616_2692913_-\|tail	phage tail protein	K7PGT9	Enterobacteria_phage	1.1e-298	71.4
AUK01433.1\|2692977_2693577_-	Ail/Lom family protein	H6WZM8	Escherichia_phage	3.5e-107	96.0
AUK01434.1\|2693645_2697125_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.6
AUK01435.1\|2697185_2697827_-\|tail	phage tail protein	A5LH42	Enterobacteria_phage	5.6e-95	85.6
AUK01436.1\|2697724_2698468_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.4e-144	94.3
AUK01437.1\|2698473_2699172_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	7.8e-127	94.4
AUK01438.1\|2699171_2699510_-\|tail	phage tail protein	H6WZM2	Escherichia_phage	4.0e-28	50.0
AUK01439.1\|2699502_2702736_-\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	3.9e-104	33.3
AUK01440.1\|2702899_2703100_-	hypothetical protein	NA	NA	NA	NA
AUK01441.1\|2703207_2703657_-	hypothetical protein	NA	NA	NA	NA
AUK01442.1\|2703717_2704680_-	hypothetical protein	A0A059VG08	Pseudomonas_phage	4.5e-56	39.2
AUK01443.1\|2704706_2705099_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AUK01444.1\|2705095_2705476_-	hypothetical protein	A0A059VF88	Pseudomonas_phage	6.5e-19	44.4
AUK01445.1\|2705476_2705860_-	glutamate 5-kinase	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
AUK01446.1\|2705859_2706255_-	protein singed	NA	NA	NA	NA
AUK01447.1\|2706258_2706435_-	hypothetical protein	G8C7P8	Escherichia_phage	4.7e-12	62.3
AUK01448.1\|2706477_2707617_-\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	7.4e-159	75.0
AUK01449.1\|2707715_2708480_-	hypothetical protein	G8C7P6	Escherichia_phage	1.5e-83	64.2
2708529:2708545	attL	NA	NA	NA	NA
AUK01450.1\|2708584_2709697_-	hypothetical protein	I6PD76	Cronobacter_phage	7.1e-114	54.5
AUK01451.1\|2709680_2711087_-	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	1.0e-186	69.2
AUK03637.1\|2711089_2711584_-\|terminase	terminase	A0A2P1MXD8	Escherichia_phage	8.4e-51	60.4
AUK01452.1\|2711734_2713063_+\|transposase	IS4 family transposase IS4	NA	NA	NA	NA
AUK03638.1\|2713073_2713784_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	6.8e-94	67.4
AUK01453.1\|2713809_2714904_-\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	1.0e-112	80.5
AUK01454.1\|2714907_2715117_-	hypothetical protein	NA	NA	NA	NA
AUK01455.1\|2715094_2716027_-	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	1.1e-83	54.9
AUK01456.1\|2716019_2716811_-	transcriptional regulator	R4TG31	Halovirus	2.8e-48	40.2
AUK01457.1\|2716728_2717010_-	hypothetical protein	NA	NA	NA	NA
AUK01458.1\|2716948_2718406_-	potassium transporter TrkG	NA	NA	NA	NA
AUK01459.1\|2718602_2718788_-	Spanin from lambdoid prophage Rac, outer membrane subunit	K7PHU6	Enterobacteria_phage	2.8e-15	98.2
AUK01460.1\|2719004_2719538_-	lysozyme	K7PLY1	Enterobacteria_phage	1.4e-99	95.5
AUK01461.1\|2719643_2719916_+	hypothetical protein	NA	NA	NA	NA
AUK01462.1\|2719881_2720226_-	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	1.4e-36	94.0
AUK01463.1\|2720230_2720446_-\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	9.0e-34	100.0
AUK01464.1\|2721742_2722285_-	antiterminator	A0A0U2S606	Escherichia_phage	5.4e-75	73.4
AUK01465.1\|2722281_2722572_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	7.4e-47	88.5
AUK01466.1\|2722571_2723171_-	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	5.9e-107	92.5
AUK01467.1\|2725716_2727069_+	SIR2 family protein	Q38324	Lactococcus_phage	8.6e-21	31.0
AUK01468.1\|2727816_2728629_-	hypothetical protein	A0A0U2SAW4	Escherichia_phage	3.8e-117	87.7
AUK01469.1\|2728600_2729347_-	DNA replication protein DnaC	V5UQI5	Shigella_phage	7.1e-110	78.0
AUK01470.1\|2729353_2730160_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	3.7e-72	95.8
AUK01471.1\|2730239_2730491_+	hypothetical protein	NA	NA	NA	NA
AUK01472.1\|2730491_2730788_-	hypothetical protein	NA	NA	NA	NA
AUK01473.1\|2730800_2731223_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	3.8e-68	92.9
AUK01474.1\|2731245_2731542_-	transcriptional regulator	A0A0R6PH31	Moraxella_phage	9.6e-10	44.9
AUK01475.1\|2731665_2732142_+	Rac prophage repressor	A0A2D1GNH0	Pseudomonas_phage	2.2e-11	53.4
AUK01476.1\|2732404_2732584_+	hypothetical protein	NA	NA	NA	NA
AUK01477.1\|2732594_2732750_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.1e-08	55.3
AUK01478.1\|2732746_2733235_-	superinfection exclusion protein B	NA	NA	NA	NA
AUK01479.1\|2733269_2733461_-	hypothetical protein	NA	NA	NA	NA
AUK01480.1\|2733675_2733897_+	cell division protein FtsZ	A0A0U2RTC4	Escherichia_phage	6.2e-38	100.0
AUK03639.1\|2733896_2734067_+	hypothetical protein	A0A0U2SHB5	Escherichia_phage	4.3e-23	89.3
AUK01481.1\|2734141_2734417_+	hypothetical protein	A0A0U2QW85	Escherichia_phage	2.4e-39	91.2
AUK01482.1\|2734518_2737119_+	exonuclease VIII	A0A0U2I1R6	Escherichia_phage	5.5e-250	63.5
AUK01483.1\|2737111_2737921_+	DNA recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
AUK01484.1\|2737977_2738172_+	restriction alleviation and modification enhancement protein	A0A0U2QQP4	Escherichia_phage	5.8e-32	96.9
AUK01485.1\|2738164_2738374_+	double-strand break reduction protein	A0A0U2QL97	Escherichia_phage	6.1e-27	98.4
AUK01486.1\|2738452_2738668_+	hypothetical protein	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
AUK01487.1\|2738669_2739905_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	5.5e-240	98.8
AUK01488.1\|2739956_2740892_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
AUK01489.1\|2741020_2742394_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
AUK01490.1\|2742423_2742597_-	hypothetical protein	NA	NA	NA	NA
AUK01491.1\|2742871_2743855_-	zinc transporter ZntB	NA	NA	NA	NA
AUK03640.1\|2744109_2745342_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
2750943:2750959	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3191719 : 3279519

Salmonella_phage(60.71%)

head,plate,protease,tail,portal,tRNA,integrase,capsid,transposase

attL 3257098:3257114|attR 3282815:3282831

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK01909.1\|3191719_3193012_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
AUK01910.1\|3193102_3194446_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.1e-80	40.8
AUK01911.1\|3194456_3195068_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
AUK01912.1\|3195222_3199329_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
AUK01913.1\|3199463_3199958_-	leucine-responsive regulatory protein	NA	NA	NA	NA
AUK01914.1\|3200501_3201467_+	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	8.5e-63	44.6
AUK01915.1\|3201589_3203356_+	thiol reductant ABC exporter subunit CydD	W8CYL7	Bacillus_phage	5.4e-23	24.3
AUK01916.1\|3203356_3205078_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	1.9e-20	25.2
AUK01917.1\|3205119_3205824_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AUK01918.1\|3206108_3206327_+	translation initiation factor IF-1	NA	NA	NA	NA
AUK01919.1\|3207011_3209288_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
AUK01920.1\|3209318_3209639_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
AUK01921.1\|3209961_3210186_+	cold-shock protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
AUK01922.1\|3210258_3212205_-	macrolide ABC transporter permease/ATP-binding protein MacB	G9BWD6	Planktothrix_phage	1.1e-37	40.1
AUK01923.1\|3212201_3213317_-	MacA family efflux pump subunit	NA	NA	NA	NA
AUK01924.1\|3213431_3214424_+	DUF535 domain-containing protein	NA	NA	NA	NA
AUK01925.1\|3214420_3216079_-	ATP-dependent endonuclease	NA	NA	NA	NA
AUK01926.1\|3216504_3217200_+	aquaporin	NA	NA	NA	NA
AUK03668.1\|3217571_3218546_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1
AUK01927.1\|3218766_3219666_+	transporter	NA	NA	NA	NA
AUK01928.1\|3219809_3221462_+	hydroxylamine reductase	NA	NA	NA	NA
AUK01929.1\|3221473_3222442_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AUK01930.1\|3222574_3224293_+	pyruvate oxidase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	5.2e-31	24.0
AUK01931.1\|3224329_3225331_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
AUK01932.1\|3225341_3226772_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AUK03669.1\|3226870_3227884_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AUK01933.1\|3227880_3228711_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	5.7e-07	30.0
AUK01934.1\|3228707_3229031_-	hypothetical protein	NA	NA	NA	NA
AUK01935.1\|3229156_3229672_+	lipoprotein	NA	NA	NA	NA
AUK01936.1\|3229889_3230618_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	6.0e-29	36.7
AUK01937.1\|3230635_3231367_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
AUK01938.1\|3231373_3232090_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
AUK01939.1\|3232089_3232758_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
AUK01940.1\|3233049_3233781_+	arginine/ornithine ABC transporter substrate-binding protein	NA	NA	NA	NA
AUK01941.1\|3233955_3235083_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	3.5e-28	27.6
AUK01942.1\|3235123_3235612_-	hypothetical protein	NA	NA	NA	NA
AUK01943.1\|3235671_3236517_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
AUK01944.1\|3236513_3237467_-	putrescine ABC transporter permease	NA	NA	NA	NA
AUK01945.1\|3237476_3238610_-	putrescine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-29	34.0
AUK01946.1\|3238704_3239817_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
AUK01947.1\|3240167_3240644_-	YbjN domain-containing protein	NA	NA	NA	NA
AUK01948.1\|3240731_3241634_-	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.6e-37	34.4
AUK01949.1\|3241694_3242417_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA
AUK01950.1\|3242400_3242688_-	hypothetical protein	NA	NA	NA	NA
AUK01951.1\|3242847_3243105_+	glutaredoxin	A0A2I7SAE2	Vibrio_phage	8.6e-23	61.9
AUK01952.1\|3243134_3243512_-	hypothetical protein	NA	NA	NA	NA
AUK01953.1\|3243781_3245467_+	transporter	NA	NA	NA	NA
AUK01954.1\|3245702_3245921_-	transcriptional regulator	Q53ZE7	Salmonella_virus	7.5e-20	69.0
AUK01955.1\|3246011_3247112_-	late control protein D	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.7
AUK01956.1\|3247108_3247594_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.7e-67	81.2
AUK01957.1\|3247590_3250668_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	61.4
AUK01958.1\|3250660_3250780_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
AUK01959.1\|3250794_3251097_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
AUK01960.1\|3251151_3251667_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
AUK01961.1\|3251676_3252849_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	1.0e-203	90.3
AUK01962.1\|3252955_3253369_-\|tail	tail assembly chaperone	U5P0S4	Shigella_phage	1.5e-21	74.3
AUK01963.1\|3253368_3255288_-\|tail	phage tail protein	A0A0F7LDR4	Escherichia_phage	8.0e-81	47.4
AUK01964.1\|3255284_3255890_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	5.2e-111	92.5
AUK01965.1\|3255882_3256791_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	2.2e-145	91.4
AUK01966.1\|3256777_3257137_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	2.5e-52	87.4
3257098:3257114	attL	NA	NA	NA	NA
AUK01967.1\|3257133_3257712_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	9.1e-97	89.6
AUK01968.1\|3257804_3258557_+	hypothetical protein	NA	NA	NA	NA
AUK01969.1\|3258593_3259046_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	5.7e-62	84.4
AUK01970.1\|3259038_3259470_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.4e-70	93.0
AUK01971.1\|3259432_3259636_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	2.3e-23	74.6
AUK01972.1\|3259565_3259994_-	hypothetical protein	E5G6N2	Salmonella_phage	9.9e-56	86.5
AUK01973.1\|3259990_3260506_-	glycoside hydrolase	E5G6N1	Salmonella_phage	9.0e-88	91.2
AUK01974.1\|3260486_3260702_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
AUK01975.1\|3260705_3260909_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	6.8e-31	91.0
AUK01976.1\|3260908_3261373_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	3.2e-76	88.3
AUK01977.1\|3261468_3262119_-	hypothetical protein	E5G6M7	Salmonella_phage	3.6e-110	94.9
AUK01978.1\|3262122_3263181_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	3.8e-181	93.4
AUK01979.1\|3263197_3264031_-\|capsid	capsid protein	A0A1S6KZW9	Salmonella_phage	4.5e-121	89.5
AUK01980.1\|3264173_3265940_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.7
AUK01981.1\|3265939_3266971_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.7e-171	86.7
AUK01982.1\|3267050_3267566_-	hypothetical protein	NA	NA	NA	NA
AUK01983.1\|3267562_3268210_-	hypothetical protein	NA	NA	NA	NA
AUK01984.1\|3268218_3268914_-	hypothetical protein	NA	NA	NA	NA
AUK01985.1\|3269251_3269557_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
AUK01986.1\|3269495_3269684_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
AUK01987.1\|3269836_3272251_-	endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.8
AUK01988.1\|3272247_3273105_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.1e-158	95.1
AUK01989.1\|3273101_3273329_-	hypothetical protein	E5G6L7	Salmonella_phage	2.5e-34	96.0
AUK01990.1\|3273328_3273562_-	hypothetical protein	E5G6L6	Salmonella_phage	1.6e-15	62.3
AUK01991.1\|3273629_3273971_-	hypothetical protein	E5G6L5	Salmonella_phage	8.7e-55	96.5
AUK01992.1\|3274190_3274649_+	hypothetical protein	NA	NA	NA	NA
AUK01993.1\|3274596_3274830_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	5.2e-11	86.1
AUK01994.1\|3274837_3275347_-	hypothetical protein	E5G6L3	Salmonella_phage	4.9e-86	97.0
AUK01995.1\|3275379_3275601_-	regulator	NA	NA	NA	NA
AUK01996.1\|3275725_3276619_+	chromosome partitioning protein ParB	A0A1S6KZZ7	Salmonella_phage	1.9e-40	45.5
AUK01997.1\|3276627_3277827_+	chromosome segregation protein SMC	NA	NA	NA	NA
AUK01998.1\|3277823_3278375_+	DUF4276 domain-containing protein	NA	NA	NA	NA
AUK01999.1\|3278466_3279519_+\|integrase	integrase	A0A218M4I3	Erwinia_phage	8.0e-107	57.3
3282815:3282831	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3849834 : 3901695

Enterobacteria_phage(33.33%)

plate,capsid,integrase

attL 3849730:3849749|attR 3861821:3861840

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3849730:3849749	attL	NA	NA	NA	NA
AUK02520.1\|3849834_3851169_+\|integrase	integrase	NA	NA	NA	NA
AUK02521.1\|3851250_3851964_-	hypothetical protein	I7I023	Enterobacteria_phage	7.1e-67	63.9
AUK02522.1\|3851998_3853831_-	hypothetical protein	I7HJD8	Enterobacteria_phage	1.9e-31	29.2
AUK02523.1\|3853845_3854049_-	hypothetical protein	NA	NA	NA	NA
AUK02524.1\|3854135_3855164_-\|capsid	phage capsid protein	NA	NA	NA	NA
AUK02525.1\|3855182_3855545_-	hypothetical protein	NA	NA	NA	NA
AUK02526.1\|3855541_3855754_-	hypothetical protein	NA	NA	NA	NA
AUK02527.1\|3856097_3856433_-	hypothetical protein	NA	NA	NA	NA
AUK02528.1\|3856434_3856845_-	hypothetical protein	NA	NA	NA	NA
AUK02529.1\|3856974_3857250_-	hypothetical protein	NA	NA	NA	NA
AUK02530.1\|3857261_3857954_-	transcriptional regulator	NA	NA	NA	NA
AUK02531.1\|3858192_3858381_-	hypothetical protein	NA	NA	NA	NA
AUK02532.1\|3858912_3859152_-	hypothetical protein	NA	NA	NA	NA
AUK02533.1\|3860277_3860514_-	hypothetical protein	NA	NA	NA	NA
AUK02534.1\|3861384_3861738_+	hypothetical protein	NA	NA	NA	NA
AUK02535.1\|3862011_3863265_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.7e-95	47.0
3861821:3861840	attR	NA	NA	NA	NA
AUK02536.1\|3863276_3864380_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
AUK02537.1\|3864667_3865723_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	7.7e-118	60.9
AUK02538.1\|3865761_3866163_-	sigma factor-binding protein Crl	NA	NA	NA	NA
AUK02539.1\|3866220_3867465_-	esterase	NA	NA	NA	NA
AUK02540.1\|3867556_3868015_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
AUK02541.1\|3868275_3869733_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA
AUK02542.1\|3870089_3870356_-	hypothetical protein	NA	NA	NA	NA
AUK02543.1\|3870342_3870570_+	hypothetical protein	NA	NA	NA	NA
AUK02544.1\|3870662_3871115_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AUK02545.1\|3871111_3872167_-	DNA polymerase IV	NA	NA	NA	NA
AUK03689.1\|3872237_3873026_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
AUK02546.1\|3872967_3874707_+	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
AUK02547.1\|3875024_3875522_-	hypothetical protein	NA	NA	NA	NA
AUK02548.1\|3875697_3876456_-	peptidoglycan endopeptidase	A0A1V0DZX6	Clostridioides_phage	2.6e-19	37.7
AUK02549.1\|3876747_3877488_+	transpeptidase	NA	NA	NA	NA
AUK02550.1\|3877458_3878226_-	class II glutamine amidotransferase	NA	NA	NA	NA
AUK02551.1\|3878431_3879010_-	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
AUK02552.1\|3879249_3881694_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
AUK02553.1\|3881736_3882210_-	inhibitor of vertebrate lysozyme	NA	NA	NA	NA
AUK02554.1\|3882363_3883134_+	amidohydrolase	NA	NA	NA	NA
AUK02555.1\|3884572_3885022_-	hypothetical protein	NA	NA	NA	NA
AUK02556.1\|3885033_3889287_-	type IV secretion protein Rhs	A0A2H4JHK7	uncultured_Caudovirales_phage	3.2e-21	44.2
AUK02557.1\|3889362_3889857_-	type VI secretion protein VgrG	NA	NA	NA	NA
AUK02558.1\|3889857_3891504_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	8.3e-26	25.0
AUK02559.1\|3891543_3891681_-	hypothetical protein	NA	NA	NA	NA
AUK02560.1\|3891713_3892232_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AUK02561.1\|3892929_3893430_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AUK02562.1\|3893464_3893689_+	hypothetical protein	NA	NA	NA	NA
AUK02563.1\|3893739_3895215_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AUK02564.1\|3895221_3895635_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AUK02565.1\|3895638_3897489_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AUK02566.1\|3897452_3898535_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AUK02567.1\|3898559_3899840_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AUK02568.1\|3899836_3900361_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AUK02569.1\|3900363_3901695_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_11

4311855 : 4336868

Stx2-converting_phage(14.29%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK02933.1\|4311855_4313241_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	7.7e-259	89.1
AUK02934.1\|4313479_4314853_-	esterase-like activity of phytase	NA	NA	NA	NA
AUK02935.1\|4315216_4315426_+	hypothetical protein	A0A0N7BTS3	Escherichia_phage	5.9e-06	96.0
AUK02936.1\|4315588_4315846_-	biofilm development YmgB/AriR family protein	NA	NA	NA	NA
AUK02937.1\|4315890_4316079_+	hypothetical protein	NA	NA	NA	NA
AUK02938.1\|4317595_4318117_+	RNA polymerase sigma factor FecI	NA	NA	NA	NA
AUK02939.1\|4318113_4319067_+	protein FecR	NA	NA	NA	NA
AUK02940.1\|4319153_4321478_+	fe(3+) dicitrate transporter fecA	NA	NA	NA	NA
AUK02941.1\|4321522_4322425_+	Fe(3+)-dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
AUK02942.1\|4322421_4323420_+	Fe3+ dicitrate ABC transporter permease	NA	NA	NA	NA
AUK02943.1\|4323416_4324373_+	iron-dicitrate transporter subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
AUK02944.1\|4324373_4325141_+	Fe(3+) dicitrate transport ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
AUK02945.1\|4325697_4326111_-	hypothetical protein	NA	NA	NA	NA
AUK02946.1\|4326888_4328044_+\|transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	2.8e-68	45.1
AUK02947.1\|4328192_4330196_+\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	7.5e-21	25.9
AUK02948.1\|4330140_4330299_+\|holin	choline transporter	NA	NA	NA	NA
AUK02949.1\|4330258_4330672_+	DUF2254 domain-containing protein	NA	NA	NA	NA
AUK02950.1\|4330606_4331774_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.8e-184	99.3
AUK02951.1\|4331949_4332345_+	hypothetical protein	NA	NA	NA	NA
AUK02952.1\|4332397_4332523_-	hypothetical protein	NA	NA	NA	NA
AUK03705.1\|4332565_4333684_-	oxidoreductase	NA	NA	NA	NA
AUK02953.1\|4333695_4334913_-	MFS transporter	NA	NA	NA	NA
AUK02954.1\|4335539_4336868_+\|transposase	IS4 family transposase IS4	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP024142

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2118 : 33528

Saccharomonospora_phage(16.67%)

transposase,integrase

attL 3207:3221|attR 35492:35506

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK03728.1\|2118_2559_-\|transposase	IS200/IS605 family transposase	I4AZM1	Saccharomonospora_phage	1.0e-31	53.6
AUK03791.1\|2578_3808_+\|transposase	transposase	O80301	Enterobacteria_phage	9.7e-189	95.4
3207:3221	attL	NA	NA	NA	NA
AUK03729.1\|4374_4668_-	hypothetical protein	NA	NA	NA	NA
AUK03730.1\|5238_5481_-	hypothetical protein	NA	NA	NA	NA
AUK03731.1\|5477_5732_-	hypothetical protein	NA	NA	NA	NA
AUK03732.1\|5728_6271_-	hypothetical protein	NA	NA	NA	NA
AUK03733.1\|6374_6890_-	J domain-containing protein	A0A0G2YAM9	Acanthamoeba_polyphaga_mimivirus	7.3e-05	40.6
AUK03734.1\|7293_7623_-	hypothetical protein	NA	NA	NA	NA
AUK03735.1\|8210_8876_+	peptidyl-arginine deiminase	A0A0A8IL09	Aurantimonas_phage	5.0e-06	31.3
AUK03792.1\|9063_9234_+	CopG family transcriptional regulator	NA	NA	NA	NA
AUK03793.1\|9251_9824_-	hypothetical protein	NA	NA	NA	NA
AUK03736.1\|9997_10159_-	Hok/Gef family protein	NA	NA	NA	NA
AUK03794.1\|10880_12110_-\|transposase	transposase	O80301	Enterobacteria_phage	9.7e-189	95.4
AUK03737.1\|12129_12570_+\|transposase	IS200/IS605 family transposase	I4AZM1	Saccharomonospora_phage	1.0e-31	53.6
AUK03795.1\|12953_13136_-	hypothetical protein	NA	NA	NA	NA
AUK03738.1\|13693_13876_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
AUK03739.1\|13900_14338_+	CopG family transcriptional regulator	A0A0R6PJ17	Moraxella_phage	9.5e-14	34.7
AUK03740.1\|14468_14795_-	hypothetical protein	A0A0N7KZV3	Escherichia_phage	2.4e-25	90.3
AUK03741.1\|14814_15546_-	hypothetical protein	NA	NA	NA	NA
AUK03742.1\|15523_16276_-	conjugal transfer protein TraL	NA	NA	NA	NA
AUK03743.1\|16293_16695_-	zinc transporter	NA	NA	NA	NA
AUK03744.1\|17062_17404_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
AUK03745.1\|17400_21714_+	relaxase	NA	NA	NA	NA
AUK03796.1\|21835_22810_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1
AUK03746.1\|23005_24631_+	phosphoethanolamine--lipid A transferase MCR-1	NA	NA	NA	NA
AUK03747.1\|24678_25449_+	PAP2 family protein	NA	NA	NA	NA
AUK03748.1\|25866_26070_-	hypothetical protein	NA	NA	NA	NA
AUK03749.1\|26215_26422_-	hemolysin expression modulator Hha	NA	NA	NA	NA
AUK03750.1\|26490_28656_-	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	3.5e-32	26.6
AUK03751.1\|28660_29236_-	DNA topoisomerase III	NA	NA	NA	NA
AUK03752.1\|29405_31082_-	hypothetical protein	NA	NA	NA	NA
AUK03753.1\|31176_31692_-	hypothetical protein	A0A0R6PHV6	Moraxella_phage	2.0e-18	38.1
AUK03797.1\|31738_32164_-	hypothetical protein	NA	NA	NA	NA
AUK03754.1\|32403_33528_-\|integrase	site-specific integrase	B5WZU7	Pseudomonas_phage	3.0e-43	40.1
35492:35506	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP024143

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

57807 : 158208

112

Escherichia_phage(34.21%)

integrase,transposase

attL 100644:100703|attR 154196:155016

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK04061.1\|57807_58782_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1
AUK03853.1\|58815_59160_+	hypothetical protein	NA	NA	NA	NA
AUK03854.1\|59181_60357_-	recombinase	NA	NA	NA	NA
AUK03855.1\|60527_60740_+	hypothetical protein	NA	NA	NA	NA
AUK03856.1\|61100_62183_+	hypothetical protein	NA	NA	NA	NA
AUK03857.1\|62349_63849_-	kinase	NA	NA	NA	NA
AUK03858.1\|63874_65512_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
AUK03859.1\|65511_66552_-	hypothetical protein	NA	NA	NA	NA
AUK03860.1\|66637_67276_-	tellurium resistance protein TerY	NA	NA	NA	NA
AUK03861.1\|67275_67917_-	tellurium resistance protein TerX	NA	NA	NA	NA
AUK03862.1\|67939_68578_-	tellurium resistance protein TerY	NA	NA	NA	NA
AUK03863.1\|69040_69508_-	tellurium resistance protein TerW	NA	NA	NA	NA
AUK03864.1\|69525_70734_-	DUF4236 domain-containing protein	NA	NA	NA	NA
AUK03865.1\|70744_71701_-	citrate lyase subunit beta	NA	NA	NA	NA
AUK03866.1\|71700_72780_-	hypothetical protein	A0A172Q0S8	Acinetobacter_phage	2.8e-38	34.1
AUK03867.1\|72781_73555_-	hypothetical protein	NA	NA	NA	NA
AUK03868.1\|73547_74690_-	adenine/guanine phosphoribosyltransferase	A0A172Q0Y1	Acinetobacter_phage	1.7e-30	35.4
AUK03869.1\|74699_75758_-	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA
AUK03870.1\|76081_76663_+	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	6.3e-13	30.0
AUK03871.1\|76662_77820_+	tellurium resistance protein TerA	NA	NA	NA	NA
AUK03872.1\|77842_78298_+	Tellurite resistance protein TerB	NA	NA	NA	NA
AUK03873.1\|78320_79361_+	tellurium resistance protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
AUK03874.1\|79409_79988_+	chemical-damaging agent resistance protein C	A0A2P1N0L4	Streptomyces_phage	3.3e-06	40.0
AUK03875.1\|80055_80631_+	chemical-damaging agent resistance protein C	K4JRX3	Caulobacter_phage	8.7e-31	41.6
AUK03876.1\|81059_82301_+	tellurium resistance protein TerF	NA	NA	NA	NA
AUK03877.1\|82863_83145_-	hypothetical protein	NA	NA	NA	NA
AUK03878.1\|83194_83386_-	hypothetical protein	NA	NA	NA	NA
AUK03879.1\|83477_83849_-	hypothetical protein	NA	NA	NA	NA
AUK03880.1\|84191_84584_+	hypothetical protein	NA	NA	NA	NA
AUK03881.1\|84562_84874_+	hypothetical protein	NA	NA	NA	NA
AUK04062.1\|85187_85481_+	XRE family transcriptional regulator	NA	NA	NA	NA
AUK03882.1\|85485_86811_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
AUK03883.1\|86871_87078_+	hypothetical protein	NA	NA	NA	NA
AUK03884.1\|87179_87590_+	hypothetical protein	NA	NA	NA	NA
AUK03885.1\|87602_88418_+	HNH endonuclease	G0X580	Salmonella_phage	1.9e-15	35.4
AUK03886.1\|88671_89097_+	hypothetical protein	NA	NA	NA	NA
AUK03887.1\|89645_89954_+	hypothetical protein	NA	NA	NA	NA
AUK03888.1\|89969_90827_+	HNH endonuclease	G0X580	Salmonella_phage	3.9e-11	34.2
AUK03889.1\|90888_91137_+	hypothetical protein	NA	NA	NA	NA
AUK03890.1\|91675_92101_-	hypothetical protein	A0A1B0V7H9	Salmonella_phage	7.6e-08	47.2
AUK03891.1\|92800_93934_-	permease	NA	NA	NA	NA
AUK03892.1\|94039_94363_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AUK03893.1\|94905_95610_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AUK03894.1\|95721_96426_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AUK03895.1\|96593_97358_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AUK03896.1\|97548_97905_-	hypothetical protein	NA	NA	NA	NA
AUK03897.1\|97850_98435_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AUK03898.1\|98434_99673_-	MFS transporter	NA	NA	NA	NA
AUK03899.1\|99669_100575_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
100644:100703	attL	NA	NA	NA	NA
AUK03900.1\|100696_101401_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK03901.1\|101391_101580_+	hypothetical protein	NA	NA	NA	NA
AUK03902.1\|101667_103104_+	glutathione synthase	NA	NA	NA	NA
AUK03903.1\|103521_104526_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AUK04063.1\|105098_105785_-	RepB family plasmid replication initiator protein	I3WF20	Macacine_betaherpesvirus	1.1e-19	28.5
AUK03904.1\|105832_106537_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AUK03905.1\|107346_108165_+	DUF4942 domain-containing protein	NA	NA	NA	NA
AUK03906.1\|108161_109367_+	ATP/GTP-binding protein	NA	NA	NA	NA
AUK03907.1\|109430_109634_-	hypothetical protein	NA	NA	NA	NA
AUK03908.1\|109646_110966_-	DUF1173 domain-containing protein	NA	NA	NA	NA
AUK03909.1\|110988_111156_-	hypothetical protein	A0A2D2W2Z9	Escherichia_phage	7.3e-07	50.9
AUK03910.1\|111216_112644_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.4e-100	52.3
AUK03911.1\|112858_113374_+	nuclease	A0A1X6WF84	Pacmanvirus	2.1e-07	38.6
AUK03912.1\|113376_114273_+	hypothetical protein	NA	NA	NA	NA
AUK04064.1\|114494_114728_+	hypothetical protein	NA	NA	NA	NA
AUK03913.1\|114773_115028_+	hypothetical protein	NA	NA	NA	NA
AUK03914.1\|115065_115353_+	hypothetical protein	NA	NA	NA	NA
AUK03915.1\|115389_115620_+	hypothetical protein	NA	NA	NA	NA
AUK04065.1\|116139_116418_+	hypothetical protein	NA	NA	NA	NA
AUK03916.1\|116447_116855_+	hypothetical protein	NA	NA	NA	NA
AUK04066.1\|116905_117223_-	hypothetical protein	NA	NA	NA	NA
AUK04067.1\|117599_117950_-	hypothetical protein	NA	NA	NA	NA
AUK03917.1\|119639_120344_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK03918.1\|120646_121522_+	class A extended-spectrum beta-lactamase CTX-M-14	A0A1B0VBP7	Salmonella_phage	6.1e-153	99.6
AUK03919.1\|122133_122550_+	fosfomycin resistance glutathione transferase FosA3	Q2LI91	Bacillus_phage	2.0e-08	35.6
AUK03920.1\|122554_123073_-	hypothetical protein	NA	NA	NA	NA
AUK03921.1\|123072_123819_-	winged helix family transcriptional regulator	NA	NA	NA	NA
AUK03922.1\|123824_124529_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK03923.1\|124642_125419_+	aminoglycoside N-acetyltransferase AAC(3)-IV	NA	NA	NA	NA
AUK03924.1\|125439_125661_+	hypothetical protein	NA	NA	NA	NA
AUK03925.1\|126969_127722_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.4e-41	44.7
AUK03926.1\|129532_130018_+	phenol hydroxylase	NA	NA	NA	NA
AUK03927.1\|130214_131305_-\|transposase	IS4 family transposase	NA	NA	NA	NA
AUK03928.1\|131394_132210_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
AUK03929.1\|132296_132599_+	phosphoglucosamine mutase	NA	NA	NA	NA
AUK03930.1\|132492_132744_-	hypothetical protein	NA	NA	NA	NA
AUK03931.1\|132774_134268_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AUK03932.1\|134379_134685_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUK03933.1\|134712_135927_-	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	8.0e-18	28.3
AUK03934.1\|136143_137028_-	DUF3363 domain-containing protein	NA	NA	NA	NA
AUK03935.1\|137952_138657_+\|transposase	IS6 family transposase IS1006	A0A077SL39	Escherichia_phage	1.9e-120	85.8
AUK03936.1\|138741_139131_-	hypothetical protein	NA	NA	NA	NA
AUK03937.1\|139395_140400_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AUK03938.1\|140478_143430_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.5
AUK03939.1\|143432_143993_-	DNA resolvase	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
AUK03940.1\|144118_144733_-	DUF3330 domain-containing protein	NA	NA	NA	NA
AUK03941.1\|144671_145685_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AUK03942.1\|145829_146327_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
AUK03943.1\|146734_147526_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
AUK03944.1\|147787_149047_+	chloramphenicol efflux MFS transporter CmlA1	S4TR35	Salmonella_phage	4.8e-26	31.7
AUK03945.1\|149139_149931_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
AUK03946.1\|150100_150433_+	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA
AUK03947.1\|150572_150758_+	hypothetical protein	NA	NA	NA	NA
AUK03948.1\|151612_152404_-	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	1.2e-14	26.5
AUK03949.1\|152494_152722_-	hypothetical protein	NA	NA	NA	NA
AUK03950.1\|152871_153117_-	hypothetical protein	NA	NA	NA	NA
AUK03951.1\|153154_154018_-	short-chain dehydrogenase/reductase	W8CYX9	Bacillus_phage	2.5e-05	31.0
AUK03952.1\|154248_154953_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK03953.1\|155103_155919_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
154196:155016	attR	NA	NA	NA	NA
AUK03954.1\|156108_156813_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK03955.1\|157037_157241_-	hypothetical protein	NA	NA	NA	NA
AUK03956.1\|157259_157439_+	hypothetical protein	NA	NA	NA	NA
AUK03957.1\|157368_158208_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP024144

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19566 : 61135

Escherichia_phage(40.0%)

integrase,transposase

attL 7767:7782|attR 59855:59870

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
7767:7782	attL	NA	NA	NA	NA
AUK04084.1\|19566_20271_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK04085.1\|20377_20968_+	hypothetical protein	NA	NA	NA	NA
AUK04086.1\|21104_21677_+	resolvase	M9Q1K0	Clostridium_phage	3.4e-19	39.4
AUK04087.1\|21713_23105_+\|transposase	ISKra4 family transposase ISKpn19	NA	NA	NA	NA
AUK04088.1\|23884_24541_-	quinolone resistance pentapeptide repeat protein QnrS1	NA	NA	NA	NA
AUK04089.1\|26647_27352_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK04090.1\|28554_29052_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
AUK04091.1\|29459_30251_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
AUK04092.1\|30512_31772_+	chloramphenicol efflux MFS transporter CmlA1	S4TR35	Salmonella_phage	4.8e-26	31.7
AUK04093.1\|31864_32656_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
AUK04094.1\|32825_33158_+	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA
AUK04095.1\|33297_33483_+	hypothetical protein	NA	NA	NA	NA
AUK04096.1\|34337_35129_-	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	1.2e-14	26.5
AUK04153.1\|35219_35447_-	hypothetical protein	NA	NA	NA	NA
AUK04097.1\|35597_35843_-	hypothetical protein	NA	NA	NA	NA
AUK04098.1\|35880_36744_-	short-chain dehydrogenase/reductase	W8CYX9	Bacillus_phage	2.5e-05	31.0
AUK04099.1\|36889_38119_-	macrolide efflux MFS transporter Mef(B)	A0A1B0RXG2	Streptococcus_phage	2.1e-74	39.0
AUK04100.1\|38568_39273_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK04101.1\|39423_40239_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
AUK04102.1\|40428_41133_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
AUK04103.1\|41179_42484_-\|integrase	integrase	NA	NA	NA	NA
AUK04104.1\|42522_43230_-	EAL domain protein	NA	NA	NA	NA
AUK04105.1\|43226_43463_-	mercury resistance protein	NA	NA	NA	NA
AUK04106.1\|43459_43822_-	transcriptional regulator	NA	NA	NA	NA
AUK04107.1\|43839_45534_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
AUK04154.1\|45585_46008_-	mercury transport protein MerC	NA	NA	NA	NA
AUK04108.1\|46043_46319_-	mercuric transporter periplasmic component	NA	NA	NA	NA
AUK04109.1\|46332_46683_-	mercuric transporter	NA	NA	NA	NA
AUK04110.1\|46754_47189_+	mercuric resistance operon regulatory protein	NA	NA	NA	NA
AUK04111.1\|47235_47940_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AUK04112.1\|47986_48259_-	hypothetical protein	NA	NA	NA	NA
AUK04155.1\|48439_48613_+	toxin-antitoxin system, antitoxin component, AbrB family protein	NA	NA	NA	NA
AUK04113.1\|48554_48785_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AUK04114.1\|48781_49198_+	PIN domain-containing protein	NA	NA	NA	NA
AUK04115.1\|51850_52108_+	hypothetical protein	NA	NA	NA	NA
AUK04116.1\|52107_52698_+	hypothetical protein	NA	NA	NA	NA
AUK04117.1\|52960_54517_+	chromosome segregation protein SMC	NA	NA	NA	NA
AUK04118.1\|54708_55326_+	proQ/FINO family protein	NA	NA	NA	NA
AUK04119.1\|55618_56752_-	permease	NA	NA	NA	NA
AUK04120.1\|56857_57181_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AUK04121.1\|57281_57992_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.1e-95	73.4
AUK04122.1\|60430_61135_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
59855:59870	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. CP024146

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

79296 : 88228

Stx2-converting_phage(44.44%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK04344.1\|79296_79644_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	1.3e-45	75.7
AUK04345.1\|79663_81235_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.4e-169	58.5
AUK04346.1\|81418_81979_-	conjugal transfer protein	NA	NA	NA	NA
AUK04347.1\|82081_82942_-	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	2.3e-11	23.0
AUK04348.1\|83000_83708_-	type-F conjugative transfer system pilin acetylase TraX	A0A077JBM8	Xanthomonas_phage	1.8e-09	30.9
AUK04349.1\|85359_85707_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	1.3e-45	75.7
AUK04350.1\|85706_86384_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	7.3e-21	47.2
AUK04351.1\|86433_87546_-	protein ImpB	F1C5A5	Cronobacter_phage	1.7e-123	60.9
AUK04352.1\|87545_87983_-	peptidase	A0A1W6JNS2	Morganella_phage	8.3e-26	48.4
AUK04353.1\|87979_88228_-	protein ImpC	Q2A098	Sodalis_phage	1.1e-14	49.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage