CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP024130	Escherichia coli strain 14EC001 plasmid p14EC001c, complete sequence	0 crisprs	csa3	0	1
CP024128	Escherichia coli strain 14EC001 plasmid p14EC001a, complete sequence	0 crisprs	NA	0	0
CP024127	Escherichia coli strain 14EC001 chromosome, complete genome	8 crisprs	csa3,PD-DExK,cas3,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol,RT	15	14
CP024129	Escherichia coli strain 14EC001 plasmid p14EC001b, complete sequence	0 crisprs	csa3	0	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7924 : 59323

Escherichia_phage(38.1%)

integrase,transposase

attL 43472:43531|attR 59328:60110

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK24763.1\|7924_8713_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.5e-52	92.0
AUK24764.1\|8770_8962_-	hypothetical protein	NA	NA	NA	NA
AUK24765.1\|11441_11723_+	hypothetical protein	NA	NA	NA	NA
AUK24766.1\|12631_13957_+	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.9e-113	47.6
AUK24767.1\|14891_15239_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
AUK24768.1\|16913_17144_+	hypothetical protein	NA	NA	NA	NA
AUK24769.1\|17061_17514_+	hypothetical protein	NA	NA	NA	NA
AUK24770.1\|20738_21710_-	plasmid-partitioning protein	I3WF22	Macacine_betaherpesvirus	1.4e-150	86.9
AUK24771.1\|21709_22876_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	3.0e-224	97.7
AUK24772.1\|23616_24627_+	replication initiation protein	J9Q7H0	Salmonella_phage	3.0e-87	54.3
AUK24773.1\|24994_25084_-	AMP nucleosidase	A0A0N7BTS3	Escherichia_phage	2.3e-07	100.0
AUK24774.1\|25049_26263_-\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	2.9e-169	100.0
AUK24775.1\|27268_27685_-	traK protein	NA	NA	NA	NA
AUK24776.1\|28269_28605_+	hypothetical protein	NA	NA	NA	NA
AUK24777.1\|28613_28805_+	plasmid stabilization protein	NA	NA	NA	NA
AUK24778.1\|29932_30688_+	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	4.5e-136	96.0
AUK24779.1\|30688_30883_+	hypothetical protein	NA	NA	NA	NA
AUK24780.1\|31367_31556_-	hypothetical protein	NA	NA	NA	NA
AUK24781.1\|31682_31871_-	hypothetical protein	NA	NA	NA	NA
AUK24782.1\|32025_32295_+	hypothetical protein	NA	NA	NA	NA
AUK24783.1\|32291_33002_+	hypothetical protein	A0A077SL39	Escherichia_phage	2.3e-89	99.4
AUK24784.1\|33103_33583_+	transcriptional regulator	NA	NA	NA	NA
AUK24785.1\|33652_36805_-	multidrug efflux RND transporter permease subunit OqxB	NA	NA	NA	NA
AUK24786.1\|36828_38004_-	multidrug efflux RND transporter periplasmic adaptor subunit OqxA	NA	NA	NA	NA
AUK24787.1\|38323_39028_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AUK24788.1\|38973_39153_-	hypothetical protein	Q1MVP5	Enterobacteria_phage	7.3e-05	85.7
AUK24789.1\|39221_39608_+	bleomycin binding protein	NA	NA	NA	NA
AUK24790.1\|40704_41097_-	NimC/NimA family protein	NA	NA	NA	NA
AUK24791.1\|42851_43163_-	hypothetical protein	NA	NA	NA	NA
AUK24792.1\|43198_43477_-	IncN plasmid KikA protein	NA	NA	NA	NA
43472:43531	attL	NA	NA	NA	NA
AUK24793.1\|43535_44240_+\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
AUK24794.1\|44680_44866_+	hypothetical protein	NA	NA	NA	NA
AUK24795.1\|45720_46512_-	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	1.2e-14	26.5
AUK24834.1\|46602_46830_-	hypothetical protein	NA	NA	NA	NA
AUK24796.1\|46980_47226_-	hypothetical protein	NA	NA	NA	NA
AUK24797.1\|47263_48127_-	short-chain dehydrogenase/reductase	W8CYX9	Bacillus_phage	2.5e-05	31.0
AUK24798.1\|48272_49502_-	macrolide efflux MFS transporter Mef(B)	A0A1B0RXG2	Streptococcus_phage	2.1e-74	39.0
AUK24799.1\|49951_50656_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUK24800.1\|50806_51622_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
AUK24801.1\|51811_52516_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.1e-139	99.6
AUK24802.1\|52562_53867_-\|integrase	integrase	NA	NA	NA	NA
AUK24803.1\|53905_54613_-	EAL domain-containing protein	NA	NA	NA	NA
AUK24804.1\|54609_54846_-	mercury resistance protein	NA	NA	NA	NA
AUK24805.1\|54842_55205_-	transcriptional regulator	NA	NA	NA	NA
AUK24806.1\|55222_56917_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
AUK24835.1\|56968_57391_-	mercury transport protein MerC	NA	NA	NA	NA
AUK24807.1\|57426_57702_-	mercuric transporter periplasmic component	NA	NA	NA	NA
AUK24808.1\|57715_58066_-	mercuric transporter	NA	NA	NA	NA
AUK24809.1\|58137_58572_+	mercuric resistance operon regulatory protein	NA	NA	NA	NA
AUK24810.1\|58618_59323_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
59328:60110	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP024127

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CRISPR-Cas detection and classification

Crispr_ID: CP024127_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024127_1

1005939-1006577

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

10 spacers

The CRISPR arrays of CP024127_1

>merge|CP024127|1|1005939-1006577|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCGGACACCATAATGATACTAAGTGTCGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCGGTAACTACGGCACAAAACAGGAGCACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTGTGATTCAGTAATCGTTTGAGTATGTACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGAATCCCAGCCTTGAAATTTTGGCTCATGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGTTCTATTTCCTCGGGATTTGCCGACACGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAAAAACCGGGCAATCGCAAAAAGGCGTAATGTGTTCCCCGCGCCAGCGGGGATAAACCTGTGTTTGCGGCATTAACGCTCACCAGCATTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCAGATACACGGCTTTGTATTCCGTGCGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATAGCAATAGTCCATAGATTTGCGAAAACAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCCTGACGAGACTACTGAGGCCGTTCTGTCGAGTTCCCCGCGCCAGCGGGGATAAACCA

>CP024127|1|1|1005939-1006576|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTGTCGGACACCATAATGATACTAAGTGTCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATCGGTAACTACGGCACAAAACAGGAGCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTTTGTGATTCAGTAATCGTTTGAGTATGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGAATCCCAGCCTTGAAATTTTGGCTCATGGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGGTTCTATTTCCTCGGGATTTGCCGACACGC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAAAAACCGGGCAATCGCAAAAAGGCGTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	TGTGTTTGCGGCATTAACGCTCACCAGCATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACC

>CP024127|1|1|1005939-1006577|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCGGACACCATAATGATACTAAGTGTCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGGTAACTACGGCACAAAACAGGAGCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGTGATTCAGTAATCGTTTGAGTATGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATCCCAGCCTTGAAATTTTGGCTCATGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTTCTATTTCCTCGGGATTTGCCGACACGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GTGTTTGCGGCATTAACGCTCACCAGCATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>CP024127|1|1|1005939-1006577|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCGGACACCATAATGATACTAAGTGTCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGGTAACTACGGCACAAAACAGGAGCACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGTGATTCAGTAATCGTTTGAGTATGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAATCCCAGCCTTGAAATTTTGGCTCATGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGTTCTATTTCCTCGGGATTTGCCGACACGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAAAACCGGGCAATCGCAAAAAGGCGTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCT	GTGTTTGCGGCATTAACGCTCACCAGCATTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCAGATACACGGCTTTGTATTCCGTGCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAGCAATAGTCCATAGATTTGCGAAAACAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCCTGACGAGACTACTGAGGCCGTTCTGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
CP024127.1\|AUK20642.1\|1014034_1014814_+\|electron-transfer-flavoprotein	unknown	unknown	gnl\|CDD\|224997
CP024127.1\|AUK20637.1\|1007215_1008694_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
CP024127.1\|AUK20631.1\|998230_998479_+\|antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
CP024127.1\|AUK20646.1\|1016661_1017933_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
CP024127.1\|AUK20633.1\|998884_999676_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP024127.1\|AUK20638.1\|1008720_1009998_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
CP024127.1\|AUK20628.1\|991756_994513_-\|signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|236848
CP024127.1\|AUK20630.1\|995918_998153_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP024127.1\|AUK20632.1\|998478_998814_+\|mRNA-interferase-MazF	unknown	unknown	gnl\|CDD\|182138
CP024127.1\|AUK20627.1\|990183_991524_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
CP024127.1\|AUK20636.1\|1004927_1005599_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP024127.1\|AUK20644.1\|1015818_1016394_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
CP024127.1\|AUK20641.1\|1012719_1014057_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
CP024127.1\|AUK20640.1\|1011171_1012626_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
CP024127.1\|AUK20634.1\|999903_1001541_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP024127.1\|AUK20643.1\|1014810_1015671_+\|electron-transfer-flavoprotein	unknown	unknown	gnl\|CDD\|224936
CP024127.1\|AUK20645.1\|1016410_1016671_-\|ferredoxin-like-protein-YgcO	unknown	unknown	gnl\|CDD\|225289
CP024127.1\|AUK20629.1\|994569_995871_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP024127.1\|AUK20635.1\|1001628_1002927_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP024127.1\|AUK20639.1\|1010316_1011102_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|187605

Protein	Function_ID	Function_description	E-value
CP024127.1\|AUK20642.1\|1014034_1014814_+\|electron-transfer-flavoprotein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
CP024127.1\|AUK20637.1\|1007215_1008694_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	3.68061e-108
CP024127.1\|AUK20631.1\|998230_998479_+\|antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	2.43005e-47
CP024127.1\|AUK20646.1\|1016661_1017933_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	9.16926e-127
CP024127.1\|AUK20633.1\|998884_999676_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
CP024127.1\|AUK20638.1\|1008720_1009998_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.32565e-29
CP024127.1\|AUK20628.1\|991756_994513_-\|signal-transduction-histidine-kinase	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP024127.1\|AUK20630.1\|995918_998153_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP024127.1\|AUK20632.1\|998478_998814_+\|mRNA-interferase-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
CP024127.1\|AUK20627.1\|990183_991524_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
CP024127.1\|AUK20636.1\|1004927_1005599_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
CP024127.1\|AUK20644.1\|1015818_1016394_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
CP024127.1\|AUK20641.1\|1012719_1014057_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.74708e-50
CP024127.1\|AUK20640.1\|1011171_1012626_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.73778e-83
CP024127.1\|AUK20634.1\|999903_1001541_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP024127.1\|AUK20643.1\|1014810_1015671_+\|electron-transfer-flavoprotein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.42017e-90
CP024127.1\|AUK20645.1\|1016410_1016671_-\|ferredoxin-like-protein-YgcO	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	7.43419e-42
CP024127.1\|AUK20629.1\|994569_995871_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP024127.1\|AUK20635.1\|1001628_1002927_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP024127.1\|AUK20639.1\|1010316_1011102_+\|oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.84461e-140

>CP024127.1|AUK20636.1|1004927_1005599_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP024127.1|AUK20635.1|1001628_1002927_+|enolase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP024127.1|AUK20634.1|999903_1001541_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP024127.1|AUK20633.1|998884_999676_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP024127.1|AUK20632.1|998478_998814_+|mRNA-interferase-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>CP024127.1|AUK20631.1|998230_998479_+|antitoxin-MazE
MIHSSVKRWGNSPAVRIPTTLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>CP024127.1|AUK20630.1|995918_998153_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>CP024127.1|AUK20629.1|994569_995871_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDLNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>CP024127.1|AUK20628.1|991756_994513_-|signal-transduction-histidine-kinase
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>CP024127.1|AUK20627.1|990183_991524_+|glucarate-dehydratase
MSSQFTTPVVTEMQVIPAAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>CP024127.1|AUK20637.1|1007215_1008694_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWSVDYKSWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEINHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>CP024127.1|AUK20638.1|1008720_1009998_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQIAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAVEAYRNMWLMGMAALVMVIVFTFLLFQKIRTADSAPAMASSK
>CP024127.1|AUK20639.1|1010316_1011102_+|oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>CP024127.1|AUK20640.1|1011171_1012626_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>CP024127.1|AUK20641.1|1012719_1014057_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>CP024127.1|AUK20642.1|1014034_1014814_+|electron-transfer-flavoprotein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>CP024127.1|AUK20643.1|1014810_1015671_+|electron-transfer-flavoprotein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>CP024127.1|AUK20644.1|1015818_1016394_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>CP024127.1|AUK20645.1|1016410_1016671_-|ferredoxin-like-protein-YgcO
MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPEGNLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>CP024127.1|AUK20646.1|1016661_1017933_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEEEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLEPSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: CP024127_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024127_2

1033628-1033961

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

5 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of CP024127_2

>merge|CP024127|2|1033628-1033961|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGAGCGTAGAGATTCTCGAAACCGATCCGGACGGTGTTCCCCGCGCCAGCGGGGATAAACCGAATAAATAATAATCCAGTAGCCCCATGTATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTAATAAAAAATATTCTATTTCTGCTGAATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTGCGAGCAAAAGATCCAGGCCGAGAAAGACGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTAAAAACACGGTCTGAACCGACATTCATGTGTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP024127|2|2|1033628-1033961|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGTAGAGATTCTCGAAACCGATCCGGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAAATAATAATCCAGTAGCCCCATGTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAATAAAAAATATTCTATTTCTGCTGAATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGCGAGCAAAAGATCCAGGCCGAGAAAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP024127|2|2|1033628-1033961|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGTAGAGATTCTCGAAACCGATCCGGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAAATAATAATCCAGTAGCCCCATGTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAATAAAAAATATTCTATTTCTGCTGAATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGCGAGCAAAAGATCCAGGCCGAGAAAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>CP024127|2|2|1033628-1033961|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGCGTAGAGATTCTCGAAACCGATCCGGACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAAATAATAATCCAGTAGCCCCATGTATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTAATAAAAAATATTCTATTTCTGCTGAATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGCGAGCAAAAGATCCAGGCCGAGAAAGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP024127.1\|AUK20661.1\|1036241_1037669_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP024127.1\|AUK20655.1\|1030942_1031689_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP024127.1\|AUK20664.1\|1038840_1039152_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP024127.1\|AUK20667.1\|1040356_1041406_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP024127.1\|AUK20657.1\|1032317_1033241_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP024127.1\|AUK20653.1\|1029328_1029865_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP024127.1\|AUK20649.1\|1020490_1022203_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP024127.1\|AUK20660.1\|1035331_1036240_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP024127.1\|AUK20663.1\|1038323_1038647_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371891
CP024127.1\|AUK20658.1\|1033237_1033531_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP024127.1\|AUK20656.1\|1031670_1032321_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP024127.1\|AUK20651.1\|1023276_1023429_+\|type-I-toxin-antitoxin-system-hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
CP024127.1\|AUK20654.1\|1029876_1030932_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
CP024127.1\|AUK20662.1\|1037668_1038274_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP024127.1\|AUK20668.1\|1041386_1042148_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP024127.1\|AUK20650.1\|1022277_1023012_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP024127.1\|AUK20652.1\|1024973_1027673_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP024127.1\|AUK20665.1\|1039170_1039881_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP024127.1\|AUK20666.1\|1039880_1040360_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP024127.1\|AUK20659.1\|1034042_1035080_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299

Protein	Function_ID	Function_description	E-value
CP024127.1\|AUK20661.1\|1036241_1037669_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP024127.1\|AUK20655.1\|1030942_1031689_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.94879e-48
CP024127.1\|AUK20664.1\|1038840_1039152_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
CP024127.1\|AUK20667.1\|1040356_1041406_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP024127.1\|AUK20657.1\|1032317_1033241_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	8.96044e-158
CP024127.1\|AUK20653.1\|1029328_1029865_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.12087e-29
CP024127.1\|AUK20649.1\|1020490_1022203_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP024127.1\|AUK20660.1\|1035331_1036240_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP024127.1\|AUK20663.1\|1038323_1038647_+\|hypothetical-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP024127.1\|AUK20658.1\|1033237_1033531_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.21674e-65
CP024127.1\|AUK20656.1\|1031670_1032321_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.38075e-91
CP024127.1\|AUK20651.1\|1023276_1023429_+\|type-I-toxin-antitoxin-system-hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	4.96653e-13
CP024127.1\|AUK20654.1\|1029876_1030932_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.80924e-154
CP024127.1\|AUK20662.1\|1037668_1038274_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.20197e-146
CP024127.1\|AUK20668.1\|1041386_1042148_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
CP024127.1\|AUK20650.1\|1022277_1023012_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.32685e-138
CP024127.1\|AUK20652.1\|1024973_1027673_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	5.38567e-180
CP024127.1\|AUK20665.1\|1039170_1039881_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
CP024127.1\|AUK20666.1\|1039880_1040360_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
CP024127.1\|AUK20659.1\|1034042_1035080_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0

>CP024127.1|AUK20658.1|1033237_1033531_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMIVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>CP024127.1|AUK20657.1|1032317_1033241_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDLVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>CP024127.1|AUK20656.1|1031670_1032321_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRSFTPELSTGQQLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSWQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>CP024127.1|AUK20655.1|1030942_1031689_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDRFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>CP024127.1|AUK20654.1|1029876_1030932_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKVLAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLEVAVQRITTLRENMNTVYEQKTDYASFDVMNKQGSMKDVLDFICA
>CP024127.1|AUK20653.1|1029328_1029865_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>CP024127.1|AUK20652.1|1024973_1027673_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRLWCIEQRQDPEMANVILVNDDESCGYSATEGLIGKVG
>CP024127.1|AUK20651.1|1023276_1023429_+|type-I-toxin-antitoxin-system-hok-family-toxin
MLTKYALVAIIVLCFTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>CP024127.1|AUK20650.1|1022277_1023012_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG
>CP024127.1|AUK20649.1|1020490_1022203_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>CP024127.1|AUK20659.1|1034042_1035080_-|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>CP024127.1|AUK20660.1|1035331_1036240_+|sulfate-adenylyltransferase-subunit-2
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP024127.1|AUK20661.1|1036241_1037669_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKLLVVAINKMDLVDYSEKTFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMAWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>CP024127.1|AUK20662.1|1037668_1038274_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRYFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP024127.1|AUK20663.1|1038323_1038647_+|hypothetical-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP024127.1|AUK20664.1|1038840_1039152_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP024127.1|AUK20665.1|1039170_1039881_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP024127.1|AUK20666.1|1039880_1040360_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP024127.1|AUK20667.1|1040356_1041406_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQCWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP024127.1|AUK20668.1|1041386_1042148_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: CP024127_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024127_3

1537695-1537812

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024127_3

>merge|CP024127|3|1537695-1537812|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>CP024127|3|3|1537695-1537812|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
CP024127.1\|AUK21118.1\|1557687_1558872_-\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
CP024127.1\|AUK21100.1\|1526401_1527301_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182167
CP024127.1\|AUK21111.1\|1544692_1545415_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
CP024127.1\|AUK21114.1\|1550022_1550646_+\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
CP024127.1\|AUK24425.1\|1536467_1537598_-\|ribonucleoside-diphosphate-reductase-1-subunit-beta	unknown	unknown	gnl\|CDD\|181647
CP024127.1\|AUK21115.1\|1550579_1555184_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225248
CP024127.1\|AUK21107.1\|1535509_1536160_+\|protein-InaA	unknown	unknown	gnl\|CDD\|182136
CP024127.1\|AUK21101.1\|1527493_1528684_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
CP024127.1\|AUK21117.1\|1556858_1557614_+\|DUF2135-domain-containing-protein	unknown	unknown	gnl\|CDD\|227021
CP024127.1\|AUK21113.1\|1548337_1550026_+\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
CP024127.1\|AUK21103.1\|1529929_1531558_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
CP024127.1\|AUK21105.1\|1533970_1535047_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
CP024127.1\|AUK21116.1\|1555184_1556834_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227732
CP024127.1\|AUK21102.1\|1528680_1529940_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	unknown	unknown	gnl\|CDD\|225617
CP024127.1\|AUK21109.1\|1537831_1540117_-\|ribonucleoside-diphosphate-reductase-1-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
CP024127.1\|AUK21112.1\|1545561_1548189_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
CP024127.1\|AUK21104.1\|1531830_1532076_+\|glycerol-3-phosphate-transporter-domain-protein	unknown	unknown	gnl\|CDD\|236889
CP024127.1\|AUK21110.1\|1540812_1544565_+\|AIDA-I-family-autotransporter-YfaL	unknown	unknown	gnl\|CDD\|182059
CP024127.1\|AUK21108.1\|1536213_1536468_-\|ferredoxin	unknown	unknown	gnl\|CDD\|182668
CP024127.1\|AUK21106.1\|1535088_1535295_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182050

Protein	Function_ID	Function_description	E-value
CP024127.1\|AUK21118.1\|1557687_1558872_-\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
CP024127.1\|AUK21100.1\|1526401_1527301_-\|hypothetical-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
CP024127.1\|AUK21111.1\|1544692_1545415_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.65303e-171
CP024127.1\|AUK21114.1\|1550022_1550646_+\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
CP024127.1\|AUK24425.1\|1536467_1537598_-\|ribonucleoside-diphosphate-reductase-1-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
CP024127.1\|AUK21115.1\|1550579_1555184_+\|hypothetical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
CP024127.1\|AUK21107.1\|1535509_1536160_+\|protein-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	2.86156e-158
CP024127.1\|AUK21101.1\|1527493_1528684_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
CP024127.1\|AUK21117.1\|1556858_1557614_+\|DUF2135-domain-containing-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	3.80255e-148
CP024127.1\|AUK21113.1\|1548337_1550026_+\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
CP024127.1\|AUK21103.1\|1529929_1531558_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
CP024127.1\|AUK21105.1\|1533970_1535047_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
CP024127.1\|AUK21116.1\|1555184_1556834_+\|hypothetical-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	3.34053e-127
CP024127.1\|AUK21102.1\|1528680_1529940_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
CP024127.1\|AUK21109.1\|1537831_1540117_-\|ribonucleoside-diphosphate-reductase-1-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
CP024127.1\|AUK21112.1\|1545561_1548189_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
CP024127.1\|AUK21104.1\|1531830_1532076_+\|glycerol-3-phosphate-transporter-domain-protein	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	8.61393e-48
CP024127.1\|AUK21110.1\|1540812_1544565_+\|AIDA-I-family-autotransporter-YfaL	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
CP024127.1\|AUK21108.1\|1536213_1536468_-\|ferredoxin	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
CP024127.1\|AUK21106.1\|1535088_1535295_-\|hypothetical-protein	gnl\|CDD\|182050	PRK09729, PRK09729, hypothetical protein; Provisional.	1.13329e-36

>CP024127.1|AUK24425.1|1536467_1537598_-|ribonucleoside-diphosphate-reductase-1-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>CP024127.1|AUK21108.1|1536213_1536468_-|ferredoxin
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>CP024127.1|AUK21107.1|1535509_1536160_+|protein-InaA
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>CP024127.1|AUK21106.1|1535088_1535295_-|hypothetical-protein
MNFIRQGLGIALQPELTLKSIAGELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCMEQLVAIGKI
>CP024127.1|AUK21105.1|1533970_1535047_+|glycerophosphoryl-diester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>CP024127.1|AUK21104.1|1531830_1532076_+|glycerol-3-phosphate-transporter-domain-protein
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISGDAANLLI
>CP024127.1|AUK21103.1|1529929_1531558_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>CP024127.1|AUK21102.1|1528680_1529940_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-B
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVHQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>CP024127.1|AUK21101.1|1527493_1528684_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>CP024127.1|AUK21100.1|1526401_1527301_-|hypothetical-protein
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLEQGFEREIVLATTQLTDADIPNCH
>CP024127.1|AUK21109.1|1537831_1540117_-|ribonucleoside-diphosphate-reductase-1-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>CP024127.1|AUK21110.1|1540812_1544565_+|AIDA-I-family-autotransporter-YfaL
MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGGDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGERMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLSGSVAWQKGSDDFAQTAGFLSMTVKW
>CP024127.1|AUK21111.1|1544692_1545415_-|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>CP024127.1|AUK21112.1|1545561_1548189_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>CP024127.1|AUK21113.1|1548337_1550026_+|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>CP024127.1|AUK21114.1|1550022_1550646_+|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>CP024127.1|AUK21115.1|1550579_1555184_+|hypothetical-protein
MDTQRFQSQFHWHLSFKFSGAIAACLSLSLVGTGLANADDSLPSSNYAPPAGGTFFLLADSSFSSSEEAKVRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVKQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILVKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVIGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVRVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGENALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINPGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKDEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEDWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>CP024127.1|AUK21116.1|1555184_1556834_+|hypothetical-protein
MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVKPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLIIPDSSATQRVSALPATTGARTMAAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>CP024127.1|AUK21117.1|1556858_1557614_+|DUF2135-domain-containing-protein
MLLVALSPVAHSEGVQEVEIDAPLSGWHPVEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>CP024127.1|AUK21118.1|1557687_1558872_-|acetyl-CoA-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKIDSQHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDEFPKADSTTEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLTRIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKNLGFDSEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN

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Crispr_ID: CP024127_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024127_4

2310133-2310256

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024127_4

>merge|CP024127|4|2310133-2310256|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP024127|4|4|2310133-2310256|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP024127.1\|AUK21843.1\|2319141_2320167_-\|PurR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236739
CP024127.1\|AUK21829.1\|2302867_2304970_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
CP024127.1\|AUK21836.1\|2310533_2311747_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
CP024127.1\|AUK21831.1\|2305684_2306353_+\|thiosulfate-reductase-electron-transport-protein-PhsB	unknown	unknown	gnl\|CDD\|274451
CP024127.1\|AUK21839.1\|2314768_2315410_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
CP024127.1\|AUK21845.1\|2320465_2320555_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
CP024127.1\|AUK21830.1\|2304973_2305621_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182160
CP024127.1\|AUK21827.1\|2301556_2301766_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
CP024127.1\|AUK21840.1\|2315449_2316598_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
CP024127.1\|AUK21835.1\|2309692_2309998_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
CP024127.1\|AUK21837.1\|2311883_2313140_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
CP024127.1\|AUK21838.1\|2313180_2314554_-\|multidrug-resistance-protein-MdtK	unknown	unknown	gnl\|CDD\|234981
CP024127.1\|AUK21832.1\|2306349_2307135_+\|protein-PhsC	unknown	unknown	gnl\|CDD\|184968
CP024127.1\|AUK21842.1\|2318212_2319145_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
CP024127.1\|AUK21833.1\|2307138_2307951_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
CP024127.1\|AUK21826.1\|2299587_2301000_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|181699
CP024127.1\|AUK21841.1\|2316888_2318100_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
CP024127.1\|AUK21834.1\|2307962_2309567_-\|FAD/NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|182134
CP024127.1\|AUK21828.1\|2302220_2302847_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182135
CP024127.1\|AUK21844.1\|2320154_2320379_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP024127.1\|AUK21843.1\|2319141_2320167_-\|PurR-family-transcriptional-regulator	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
CP024127.1\|AUK21829.1\|2302867_2304970_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
CP024127.1\|AUK21836.1\|2310533_2311747_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	7.46609e-155
CP024127.1\|AUK21831.1\|2305684_2306353_+\|thiosulfate-reductase-electron-transport-protein-PhsB	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	1.29923e-76
CP024127.1\|AUK21839.1\|2314768_2315410_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
CP024127.1\|AUK21830.1\|2304973_2305621_+\|hypothetical-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	3.717e-122
CP024127.1\|AUK21827.1\|2301556_2301766_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
CP024127.1\|AUK21840.1\|2315449_2316598_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
CP024127.1\|AUK21835.1\|2309692_2309998_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	4.48611e-64
CP024127.1\|AUK21837.1\|2311883_2313140_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
CP024127.1\|AUK21838.1\|2313180_2314554_-\|multidrug-resistance-protein-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
CP024127.1\|AUK21832.1\|2306349_2307135_+\|protein-PhsC	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.40835e-163
CP024127.1\|AUK21842.1\|2318212_2319145_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
CP024127.1\|AUK21833.1\|2307138_2307951_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	7.33089e-174
CP024127.1\|AUK21826.1\|2299587_2301000_-\|pyruvate-kinase	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
CP024127.1\|AUK21841.1\|2316888_2318100_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
CP024127.1\|AUK21834.1\|2307962_2309567_-\|FAD/NAD(P)-binding-domain-containing-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
CP024127.1\|AUK21828.1\|2302220_2302847_+\|hypothetical-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140

>CP024127.1|AUK21835.1|2309692_2309998_-|monooxygenase
MATLLQLHFSFNGPFGDTMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>CP024127.1|AUK21834.1|2307962_2309567_-|FAD/NAD(P)-binding-domain-containing-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARKQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFHGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPSSRARRRLSFD
>CP024127.1|AUK21833.1|2307138_2307951_+|hypothetical-protein
MIITQADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALVYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>CP024127.1|AUK21832.1|2306349_2307135_+|protein-PhsC
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSATDHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQTHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>CP024127.1|AUK21831.1|2305684_2306353_+|thiosulfate-reductase-electron-transport-protein-PhsB
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFSPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>CP024127.1|AUK21830.1|2304973_2305621_+|hypothetical-protein
MGKMNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYLVAEEELSVLLESIKQNGDYADIACLTGSKDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>CP024127.1|AUK21829.1|2302867_2304970_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>CP024127.1|AUK21828.1|2302220_2302847_+|hypothetical-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>CP024127.1|AUK21827.1|2301556_2301766_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>CP024127.1|AUK21826.1|2299587_2301000_-|pyruvate-kinase
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>CP024127.1|AUK21836.1|2310533_2311747_-|IS3-family-transposase
MTKNTRFSPEVRQRAVRMVLESQGEYDSQWAAICSIAPKIGCTPETLRVWVRQHERDTGSGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEFDRLWKKLMPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQRDDWLKREIQRVYDENHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTVSRKAVSAGDRVNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGCIVGWRVSSSMETTFVLDALEQALWARRPSGTVHHSDKGSQYVSLAYTERLKEAKLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHIPPAEAEKAYYASIRNDDLAA
>CP024127.1|AUK21837.1|2311883_2313140_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAELQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>CP024127.1|AUK21838.1|2313180_2314554_-|multidrug-resistance-protein-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRMPSAIILQRASR
>CP024127.1|AUK21839.1|2314768_2315410_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>CP024127.1|AUK21840.1|2315449_2316598_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>CP024127.1|AUK21841.1|2316888_2318100_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>CP024127.1|AUK21842.1|2318212_2319145_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>CP024127.1|AUK21843.1|2319141_2320167_-|PurR-family-transcriptional-regulator
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>CP024127.1|AUK21844.1|2320154_2320379_-|hypothetical-protein
MISVFTTSPFRQDRPKFHAYTICVLAIDPFLTLRVVFPAYRNTFVVRKVCKGKRLPCDFAGAEVRVWSEMEWQQ
>CP024127.1|AUK21845.1|2320465_2320555_+|YnhF-family-membrane-protein
MSTDLKFSLVTTIIVLGLIVAVGLTAALH

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Crispr_ID: CP024127_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024127_6

3284992-3285136

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

2 spacers

The CRISPR arrays of CP024127_6

>merge|CP024127|6|3284992-3285136|CRISPRCasFinder,PILER-CR
CATTTTATCTGTCTGTACGGCAGTGAACATGGTGGGTGGAGTATGTTACCTGTGAATTTCTAAGCTGCCTGTACGGCAGTGAACGTTCGCTGCAACCGCTAGCCAAGACGGTAGGTTTTTCTAAGCTGCCTGTACGGCAGTGAAC

>CP024127|6|6|3284992-3285136|CRISPRCasFinder
CATTTTATCTGTCTGTACGGCAGTGAAC	ATGGTGGGTGGAGTATGTTACCTGTGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTCGCTGCAACCGCTAGCCAAGACGGTAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>CP024127|6|3|3285000-3285136|PILER-CR
CTGTCTGTACGGCAGTGAACATGGTGGG	TGGAGTATGTTACCTGTGAATTTCTAAG
CTGCCTGTACGGCAGTGAACGTTCGCTG	CAACCGCTAGCCAAGACGGTAGGTTTTTCTAAG
CTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP024127.1\|AUK22767.1\|3297072_3298725_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
CP024127.1\|AUK22752.1\|3277742_3278237_-\|leucine-responsive-regulatory-protein	unknown	unknown	gnl\|CDD\|183009
CP024127.1\|AUK22757.1\|3284388_3284607_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
CP024127.1\|AUK22754.1\|3279869_3281636_+\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|236870
CP024127.1\|AUK22755.1\|3281636_3283358_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
CP024127.1\|AUK22756.1\|3283399_3284104_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
CP024127.1\|AUK22763.1\|3291767_3292760_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
CP024127.1\|AUK22759.1\|3287654_3287975_-\|ATP-dependent-Clp-protease-adaptor-ClpS	unknown	unknown	gnl\|CDD\|178809
CP024127.1\|AUK22766.1\|3296029_3296929_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225287
CP024127.1\|AUK22751.1\|3273618_3277608_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
CP024127.1\|AUK22762.1\|3290537_3291653_-\|MacA-family-efflux-pump-subunit	unknown	unknown	gnl\|CDD\|183211
CP024127.1\|AUK22753.1\|3278781_3279747_+\|thioredoxin-reductase	unknown	unknown	gnl\|CDD\|182343
CP024127.1\|AUK22749.1\|3271498_3272842_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
CP024127.1\|AUK22750.1\|3272852_3273464_-\|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl\|CDD\|129638
CP024127.1\|AUK22760.1\|3288297_3288522_+\|cold-shock-protein-CspD	unknown	unknown	gnl\|CDD\|77494
CP024127.1\|AUK22765.1\|3294839_3295535_+\|aquaporin	unknown	unknown	gnl\|CDD\|235453
CP024127.1\|AUK22764.1\|3292756_3294415_-\|DUF2813-domain-containing-protein	unknown	unknown	gnl\|CDD\|226121
CP024127.1\|AUK22758.1\|3285347_3287624_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
CP024127.1\|AUK22748.1\|3270115_3271408_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
CP024127.1\|AUK22761.1\|3288594_3290541_-\|macrolide-ABC-transporter-permease/ATP-binding-protein-MacB	unknown	unknown	gnl\|CDD\|182528

Protein	Function_ID	Function_description	E-value
CP024127.1\|AUK22767.1\|3297072_3298725_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
CP024127.1\|AUK22752.1\|3277742_3278237_-\|leucine-responsive-regulatory-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
CP024127.1\|AUK22757.1\|3284388_3284607_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
CP024127.1\|AUK22754.1\|3279869_3281636_+\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP024127.1\|AUK22755.1\|3281636_3283358_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP024127.1\|AUK22756.1\|3283399_3284104_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	3.45002e-139
CP024127.1\|AUK22763.1\|3291767_3292760_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	8.48293e-133
CP024127.1\|AUK22759.1\|3287654_3287975_-\|ATP-dependent-Clp-protease-adaptor-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
CP024127.1\|AUK22766.1\|3296029_3296929_+\|hypothetical-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	4.37433e-118
CP024127.1\|AUK22751.1\|3273618_3277608_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
CP024127.1\|AUK22762.1\|3290537_3291653_-\|MacA-family-efflux-pump-subunit	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
CP024127.1\|AUK22753.1\|3278781_3279747_+\|thioredoxin-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
CP024127.1\|AUK22749.1\|3271498_3272842_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
CP024127.1\|AUK22750.1\|3272852_3273464_-\|outer-membrane-lipoprotein-carrier-protein-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
CP024127.1\|AUK22760.1\|3288297_3288522_+\|cold-shock-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
CP024127.1\|AUK22765.1\|3294839_3295535_+\|aquaporin	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.04944e-144
CP024127.1\|AUK22764.1\|3292756_3294415_-\|DUF2813-domain-containing-protein	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
CP024127.1\|AUK22758.1\|3285347_3287624_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
CP024127.1\|AUK22748.1\|3270115_3271408_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
CP024127.1\|AUK22761.1\|3288594_3290541_-\|macrolide-ABC-transporter-permease/ATP-binding-protein-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0

>CP024127.1|AUK22757.1|3284388_3284607_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>CP024127.1|AUK22756.1|3283399_3284104_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>CP024127.1|AUK22755.1|3281636_3283358_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFIFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTHVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>CP024127.1|AUK22754.1|3279869_3281636_+|thiol-reductant-ABC-exporter-subunit-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELALTDPLTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGRYAELSVAGGPFATLLAHRQEEI
>CP024127.1|AUK22753.1|3278781_3279747_+|thioredoxin-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>CP024127.1|AUK22752.1|3277742_3278237_-|leucine-responsive-regulatory-protein
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>CP024127.1|AUK22751.1|3273618_3277608_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPETVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVPPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAPQQQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>CP024127.1|AUK22750.1|3272852_3273464_-|outer-membrane-lipoprotein-carrier-protein-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>CP024127.1|AUK22749.1|3271498_3272842_-|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>CP024127.1|AUK22748.1|3270115_3271408_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>CP024127.1|AUK22758.1|3285347_3287624_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFITHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKAKNELTYGFQSAQKHKAEAAH
>CP024127.1|AUK22759.1|3287654_3287975_-|ATP-dependent-Clp-protease-adaptor-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>CP024127.1|AUK22760.1|3288297_3288522_+|cold-shock-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>CP024127.1|AUK22761.1|3288594_3290541_-|macrolide-ABC-transporter-permease/ATP-binding-protein-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>CP024127.1|AUK22762.1|3290537_3291653_-|MacA-family-efflux-pump-subunit
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>CP024127.1|AUK22763.1|3291767_3292760_+|DUF535-domain-containing-protein
MVKSTSCITIDFMNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRECMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>CP024127.1|AUK22764.1|3292756_3294415_-|DUF2813-domain-containing-protein
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRMAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>CP024127.1|AUK22765.1|3294839_3295535_+|aquaporin
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>CP024127.1|AUK22766.1|3296029_3296929_+|hypothetical-protein
MFSGLLIILVPLIVGYLIPLRQKAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>CP024127.1|AUK22767.1|3297072_3298725_+|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGDDFSAVITQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA

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Crispr_ID: CP024127_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024127_7

3451645-3451789

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024127_7

>merge|CP024127|7|3451645-3451789|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>CP024127|7|7|3451645-3451789|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
CP024127.1\|AUK22918.1\|3447087_3447279_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369224
CP024127.1\|AUK22920.1\|3447669_3447891_+\|conjugal-transfer-protein-TraR	unknown	unknown	gnl\|CDD\|222775
CP024127.1\|AUK22928.1\|3455840_3456836_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
CP024127.1\|AUK22924.1\|3448894_3449113_+\|excisionase	unknown	unknown	gnl\|CDD\|116439
CP024127.1\|AUK22936.1\|3461633_3463106_+\|molybdate-ABC-transporter-ATP-binding-protein-ModF	unknown	unknown	gnl\|CDD\|182852
CP024127.1\|AUK22934.1\|3460499_3460649_-\|multidrug-efflux-pump-accessory-protein-AcrZ	unknown	unknown	gnl\|CDD\|371231
CP024127.1\|AUK22927.1\|3451812_3454074_-\|hydratase	unknown	unknown	gnl\|CDD\|183125
CP024127.1\|AUK22929.1\|3456990_3457809_+\|pyridoxal-phosphate-phosphatase-YbhA	unknown	unknown	gnl\|CDD\|182523
CP024127.1\|AUK22926.1\|3450295_3451579_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|236709
CP024127.1\|AUK22933.1\|3460354_3460564_-\|hypothetical-protein	unknown	unknown	unknown
CP024127.1\|AUK22925.1\|3449090_3450161_+\|integrase	unknown	unknown	gnl\|CDD\|271181
CP024127.1\|AUK24531.1\|3446932_3447115_+\|DUF1317-domain-containing-protein	unknown	unknown	gnl\|CDD\|284449
CP024127.1\|AUK22935.1\|3460777_3461566_+\|molybdenum-dependent-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182640
CP024127.1\|AUK22921.1\|3447890_3448175_+\|ASCH-domain-containing-protein	unknown	unknown	gnl\|CDD\|214979
CP024127.1\|AUK22919.1\|3447289_3447571_+\|hypothetical-protein	unknown	unknown	unknown
CP024127.1\|AUK22931.1\|3458870_3459560_-\|molybdenum-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181841
CP024127.1\|AUK22932.1\|3459559_3460333_-\|molybdate-binding-periplasmic-protein	unknown	unknown	gnl\|CDD\|182641
CP024127.1\|AUK22922.1\|3448247_3448415_+\|hypothetical-protein	unknown	unknown	unknown
CP024127.1\|AUK22930.1\|3457809_3458868_-\|molybdenum-import-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
CP024127.1\|AUK22923.1\|3448443_3448788_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP024127.1\|AUK22918.1\|3447087_3447279_+\|hypothetical-protein	gnl\|CDD\|369224	pfam07131, DUF1382, Protein of unknown function (DUF1382). This family consists of several hypothetical Escherichia coli and bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown. Structural modelling suggests this domain may bind nucleic acids.	2.8756e-23
CP024127.1\|AUK22920.1\|3447669_3447891_+\|conjugal-transfer-protein-TraR	gnl\|CDD\|222775	PHA00080, PHA00080, DksA-like zinc finger domain containing protein.	6.99307e-25
CP024127.1\|AUK22924.1\|3448894_3449113_+\|excisionase	gnl\|CDD\|116439	pfam07825, Exc, Excisionase-like protein. The phage-encoded excisionase protein (Xis) is involved in excisive recombination by regulating the assembly of the excisive intasome and by inhibiting viral integration. It adopts an unusual 'winged'-helix structure in which two alpha helices are packed against two extended strands. Also present in the structure is a two-stranded anti-parallel beta-sheet, whose strands are connected by a four-residue 'wing'. During interaction with DNA, helix alpha2 is thought to insert into the major groove, while the wing contacts the adjacent minor groove or phosphodiester backbone. The C-terminal region of Xis is involved in interaction with phage-encoded integrase (Int), and a putative C-terminal alpha helix may fold upon interaction with Int and/or DNA.	8.49552e-35
CP024127.1\|AUK22928.1\|3455840_3456836_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
CP024127.1\|AUK22936.1\|3461633_3463106_+\|molybdate-ABC-transporter-ATP-binding-protein-ModF	gnl\|CDD\|182852	PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional.	0
CP024127.1\|AUK22934.1\|3460499_3460649_-\|multidrug-efflux-pump-accessory-protein-AcrZ	gnl\|CDD\|371231	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ. AcrZ is associated with the AcrA-TolC multidrug efflux pump, it may enhance the ability of the pump to recognize and export certain substrates.	1.04381e-17
CP024127.1\|AUK22927.1\|3451812_3454074_-\|hydratase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
CP024127.1\|AUK22929.1\|3456990_3457809_+\|pyridoxal-phosphate-phosphatase-YbhA	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
CP024127.1\|AUK22926.1\|3450295_3451579_+\|acyl-CoA-thioesterase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
CP024127.1\|AUK22925.1\|3449090_3450161_+\|integrase	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	6.10616e-62
CP024127.1\|AUK24531.1\|3446932_3447115_+\|DUF1317-domain-containing-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	4.8262e-34
CP024127.1\|AUK22935.1\|3460777_3461566_+\|molybdenum-dependent-transcriptional-regulator	gnl\|CDD\|182640	PRK10676, PRK10676, DNA-binding transcriptional regulator ModE; Provisional.	0
CP024127.1\|AUK22921.1\|3447890_3448175_+\|ASCH-domain-containing-protein	gnl\|CDD\|214979	smart01022, ASCH, The ASCH domain adopts a beta-barrel fold similar to that of the PUA domain. It is thought to function as an RNA-binding domain during coactivation, RNA-processing and possibly during prokaryotic translation regulation.	0.00924787
CP024127.1\|AUK22932.1\|3459559_3460333_-\|molybdate-binding-periplasmic-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
CP024127.1\|AUK22931.1\|3458870_3459560_-\|molybdenum-ABC-transporter-permease	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146
CP024127.1\|AUK22930.1\|3457809_3458868_-\|molybdenum-import-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0

>CP024127.1|AUK22926.1|3450295_3451579_+|acyl-CoA-thioesterase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>CP024127.1|AUK22925.1|3449090_3450161_+|integrase
MGRRRSHERRDLPPNLYIRNNGYYCYRDPRTGKEFGLGRDRRIAITEAIQANIELFSGHKHKPLTARINSDNSVTLHSWLDRYEKILASRGIKQKTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLSGYIDEGKAASAKLIRSTLSDAFREAIAEGHITTNPVAATRAAKSEVRRSRLTADEYLKIYQAAESSPCWLRLAMELAVVTGQRVGDLCEMKWSDIVDGYLYVEQSKTGVKIAIPTTLHVDALGISMKETLDKCKEILGGETIIASTRREPLSSGTVSRYFMRARKASGLSFEGDPPTFHELRSLSARLYEKQISDKFAQHLLGHKSDTMASQYRDDRGREWDKIEIK
>CP024127.1|AUK22924.1|3448894_3449113_+|excisionase
MYLTLQEWNARQRRPRSLETVRRWVRECRIFPPPVKDGREYLFHESAVKVDLNRPVTGSLLKRIRNGKKAKS
>CP024127.1|AUK22923.1|3448443_3448788_+|hypothetical-protein
MSDLSMKVLKWQSTGDVGISSATLASIACGLKKNIYGHHFGAPHDAADFRRCVALVEKIPEIRDSFDKVAKRVPAFKGILNEWDSLVALLKSEMKIHGNKAPETYRRISELRKD
>CP024127.1|AUK22922.1|3448247_3448415_+|hypothetical-protein
MHFRVTGERNGEPFNRVIEAENINDCYDHWMIWAQIAHADVTNIRIEELKEHQAA
>CP024127.1|AUK22921.1|3447890_3448175_+|ASCH-domain-containing-protein
MANLQLAVKSEYFDAMIRGEKTEEYRLVNDYWKKRLVNREYGSLIITKGYPKRDDSSRRIDVPYDGYEIKTITHPHFGDKPVKVFAIKVNIGNE
>CP024127.1|AUK22920.1|3447669_3447891_+|conjugal-transfer-protein-TraR
MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLAVQGCRTCASCQQDLEIIRKQRGIK
>CP024127.1|AUK22919.1|3447289_3447571_+|hypothetical-protein
MHFSGSGLHILCAYACRHGTCSMTPQQENALRSIARQANSEIKKARQQFPDKNVDDICRSVLKKHRETVTLMGLTPTHLSLAIGMLNGVFKER
>CP024127.1|AUK22918.1|3447087_3447279_+|hypothetical-protein
MHKASPVELRTSIEMAHSLAQIGVRFVPIPVETDEEFHTLATSLSQKLEMMVAKAEADERDLV
>CP024127.1|AUK24531.1|3446932_3447115_+|DUF1317-domain-containing-protein
MKHPHDNIRVGTITFVYSVTKRGWVFPGLSVIRNPLKAQRLAEEINNKREAICTKHLLLS
>CP024127.1|AUK22927.1|3451812_3454074_-|hydratase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVAALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>CP024127.1|AUK22928.1|3455840_3456836_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>CP024127.1|AUK22929.1|3456990_3457809_+|pyridoxal-phosphate-phosphatase-YbhA
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVIKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>CP024127.1|AUK22930.1|3457809_3458868_-|molybdenum-import-ATP-binding-protein-ModC
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>CP024127.1|AUK22931.1|3458870_3459560_-|molybdenum-ABC-transporter-permease
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>CP024127.1|AUK22932.1|3459559_3460333_-|molybdate-binding-periplasmic-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK
>CP024127.1|AUK22933.1|3460354_3460564_-|hypothetical-protein
MVKYSTSFLVLVKKTSPDKIIDSLNARLVGHFLFLNFLLFLPIFFLIYLTKVSNNCWENSELVVILSPT
>CP024127.1|AUK22934.1|3460499_3460649_-|multidrug-efflux-pump-accessory-protein-AcrZ
MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH
>CP024127.1|AUK22935.1|3460777_3461566_+|molybdenum-dependent-transcriptional-regulator
MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDVLSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKVAITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCEVLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIATLC
>CP024127.1|AUK22936.1|3461633_3463106_+|molybdate-ABC-transporter-ATP-binding-protein-ModF
MSSLQILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSALARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTTAEIIQDEVKDAPRCMQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAERLASLHQSGITLVLVLNRFDEIPEFVQFAGVLADCTLAETGAKEELLQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPILNNLSWQVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQQKLVQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGGLYRYVLTKIY

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Crispr_ID: CP024127_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024127_8

3727112-3727208

Orphan

Consensus_repeat	Method
TTGTAGGCCTGATAAGATGCGTCAAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024127_8

>merge|CP024127|8|3727112-3727208|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGCATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGGTTGTAGGCCTGATAAGACGCGTCAAGC

>CP024127|8|8|3727112-3727208|CRISPRCasFinder
TTGTAGGCCTGATAAGATGCGTCAAGC	ATCGCATCAGGCATTGTGCACCAATTGCCGGATGCGGCACCGG
TTGTAGGCCTGATAAGACGCGTCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP024127.1\|AUK23177.1\|3728957_3730217_-\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
CP024127.1\|AUK23167.1\|3720832_3721699_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|236760
CP024127.1\|AUK23173.1\|3725473_3725983_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
CP024127.1\|AUK23165.1\|3718907_3719600_-\|fimbrial-chaperone-SfmC	unknown	unknown	gnl\|CDD\|185117
CP024127.1\|AUK23182.1\|3737484_3738786_-\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
CP024127.1\|AUK23180.1\|3733281_3734517_+\|allantoate-amidohydrolase	unknown	unknown	gnl\|CDD\|274471
CP024127.1\|AUK23168.1\|3721700_3721913_+\|ribosome-associated-protein	unknown	unknown	gnl\|CDD\|183166
CP024127.1\|AUK23184.1\|3740263_3741718_-\|allantoin-permease	unknown	unknown	gnl\|CDD\|183106
CP024127.1\|AUK23170.1\|3722577_3723963_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
CP024127.1\|AUK23176.1\|3728131_3728947_-\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
CP024127.1\|AUK23183.1\|3738842_3740204_-\|cyclic-amidohydrolase	unknown	unknown	gnl\|CDD\|169193
CP024127.1\|AUK23169.1\|3722020_3722542_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
CP024127.1\|AUK23179.1\|3732210_3733260_+\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
CP024127.1\|AUK23172.1\|3724633_3725356_+\|UDP-2,3-diacylglucosamine-hydrolase	unknown	unknown	gnl\|CDD\|235420
CP024127.1\|AUK23181.1\|3736317_3737463_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|182152
CP024127.1\|AUK23178.1\|3730226_3731894_-\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
CP024127.1\|AUK23175.1\|3727241_3728135_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
CP024127.1\|AUK23166.1\|3719819_3720362_-\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
CP024127.1\|AUK23171.1\|3724136_3724631_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|182734
CP024127.1\|AUK23174.1\|3725979_3727047_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674

Protein	Function_ID	Function_description	E-value
CP024127.1\|AUK23177.1\|3728957_3730217_-\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.8369e-131
CP024127.1\|AUK23167.1\|3720832_3721699_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
CP024127.1\|AUK23173.1\|3725473_3725983_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	2.08254e-90
CP024127.1\|AUK23165.1\|3718907_3719600_-\|fimbrial-chaperone-SfmC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	4.4332e-149
CP024127.1\|AUK23182.1\|3737484_3738786_-\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
CP024127.1\|AUK23180.1\|3733281_3734517_+\|allantoate-amidohydrolase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
CP024127.1\|AUK23168.1\|3721700_3721913_+\|ribosome-associated-protein	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
CP024127.1\|AUK23184.1\|3740263_3741718_-\|allantoin-permease	gnl\|CDD\|183106	PRK11375, PRK11375, putative allantoin permease.	0
CP024127.1\|AUK23170.1\|3722577_3723963_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
CP024127.1\|AUK23176.1\|3728131_3728947_-\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	2.19061e-37
CP024127.1\|AUK23183.1\|3738842_3740204_-\|cyclic-amidohydrolase	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
CP024127.1\|AUK23169.1\|3722020_3722542_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.17059e-30
CP024127.1\|AUK23179.1\|3732210_3733260_+\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
CP024127.1\|AUK23172.1\|3724633_3725356_+\|UDP-2,3-diacylglucosamine-hydrolase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	1.25513e-165
CP024127.1\|AUK23181.1\|3736317_3737463_-\|glycerate-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
CP024127.1\|AUK23178.1\|3730226_3731894_-\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
CP024127.1\|AUK23175.1\|3727241_3728135_-\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
CP024127.1\|AUK23166.1\|3719819_3720362_-\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	9.67411e-92
CP024127.1\|AUK23171.1\|3724136_3724631_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
CP024127.1\|AUK23174.1\|3725979_3727047_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	5.70382e-179

>CP024127.1|AUK23174.1|3725979_3727047_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRADETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>CP024127.1|AUK23173.1|3725473_3725983_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQHLNDWRNAQTDEVLENPDPRGAA
>CP024127.1|AUK23172.1|3724633_3725356_+|UDP-2,3-diacylglucosamine-hydrolase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>CP024127.1|AUK23171.1|3724136_3724631_+|peptidyl-prolyl-cis-trans-isomerase
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>CP024127.1|AUK23170.1|3722577_3723963_-|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>CP024127.1|AUK23169.1|3722020_3722542_+|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFNFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTAYGHQVIISELMWVWLPGMLLMGMLWWRRR
>CP024127.1|AUK23168.1|3721700_3721913_+|ribosome-associated-protein
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>CP024127.1|AUK23167.1|3720832_3721699_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>CP024127.1|AUK23166.1|3719819_3720362_-|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>CP024127.1|AUK23165.1|3718907_3719600_-|fimbrial-chaperone-SfmC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN
>CP024127.1|AUK23175.1|3727241_3728135_-|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSGGKPAWIGALSRIEETLAGEAGTCISL
>CP024127.1|AUK23176.1|3728131_3728947_-|DUF2877-domain-containing-protein
MTIIHPLLASRSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWMLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQCAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRQFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>CP024127.1|AUK23177.1|3728957_3730217_-|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>CP024127.1|AUK23178.1|3730226_3731894_-|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATSNDICVTIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALTQVRRWDSACQKLPDASLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKSRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPTLRNQLITDLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARSDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIRPLSPATQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>CP024127.1|AUK23179.1|3732210_3733260_+|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQKGVAVVGISRMGHSGAISYFVQQAARAGLIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEVLTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGAPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHVVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>CP024127.1|AUK23180.1|3733281_3734517_+|allantoate-amidohydrolase
MITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLSGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTLEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSIEKAKKMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAILRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKDLVATLTELCESEKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLAIMLYQLAWQK
>CP024127.1|AUK23181.1|3736317_3737463_-|glycerate-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNDIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQALAANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>CP024127.1|AUK23182.1|3737484_3738786_-|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>CP024127.1|AUK23183.1|3738842_3740204_-|cyclic-amidohydrolase
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
>CP024127.1|AUK23184.1|3740263_3741718_-|allantoin-permease
MEHQRKLFQQRGYSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLACLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENGGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFREQALGQTLGLVVAYILFAVAGVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNATGNIIPAGYQIAAIAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFVVMRGQINLDELYTAPGDYKYYDNGFNLTAFSVTLVAVILSLGGKFIHFMEPLSRVSWFVGVIVAFAAYALLKKRTTAEKTGEQKTIG

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Crispr_ID: CP024127_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP024127_9

4286037-4286178

Orphan

Consensus_repeat	Method
GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP024127_9

>merge|CP024127|9|4286037-4286178|CRISPRCasFinder
GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATAGCTGTCGGATGCGGCATAAACGCCTTATCCAACCCGGCTGGAGAGCAACCGTAAGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA

>CP024127|9|9|4286037-4286178|CRISPRCasFinder
GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	TAGCTGTCGGATGCGGCATAAACGCCTTATCCAACCCG
GCTGGAGAGCAACCGTAAGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
CP024127.1\|AUK23684.1\|4277604_4278375_-\|protein-FixA	unknown	unknown	gnl\|CDD\|179569
CP024127.1\|AUK23695.1\|4291707_4292529_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
CP024127.1\|AUK23694.1\|4290103_4291252_-\|carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
CP024127.1\|AUK23685.1\|4278848_4280363_+\|L-carnitine/gamma-butyrobetaine-antiporter	unknown	unknown	gnl\|CDD\|179568
CP024127.1\|AUK23686.1\|4280393_4281536_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
CP024127.1\|AUK23681.1\|4275027_4275315_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
CP024127.1\|AUK23697.1\|4293675_4294626_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
CP024127.1\|AUK23683.1\|4276648_4277590_-\|protein-FixB	unknown	unknown	gnl\|CDD\|235120
CP024127.1\|AUK23693.1\|4286864_4290086_-\|carbamoyl-phosphate-synthase-large-chain	unknown	unknown	gnl\|CDD\|235393
CP024127.1\|AUK23692.1\|4286637_4286817_+\|hypothetical-protein	unknown	unknown	unknown
CP024127.1\|AUK23689.1\|4284617_4285403_+\|carnitinyl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|179599
CP024127.1\|AUK23687.1\|4281664_4282882_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
CP024127.1\|AUK23690.1\|4285408_4285999_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
CP024127.1\|AUK23700.1\|4295695_4298512_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
CP024127.1\|AUK23699.1\|4295201_4295696_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|234739
CP024127.1\|AUK23688.1\|4282955_4284509_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
CP024127.1\|AUK23691.1\|4286207_4286603_-\|transcriptional-activatory-protein-CaiF	unknown	unknown	gnl\|CDD\|183154
CP024127.1\|AUK23682.1\|4275311_4276598_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
CP024127.1\|AUK23698.1\|4294627_4295077_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|237908
CP024127.1\|AUK23696.1\|4292695_4293610_-\|ribonucleoside-hydrolase-RihC	unknown	unknown	gnl\|CDD\|182713

Protein	Function_ID	Function_description	E-value
CP024127.1\|AUK23684.1\|4277604_4278375_-\|protein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	6.8619e-170
CP024127.1\|AUK23695.1\|4291707_4292529_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	8.28292e-142
CP024127.1\|AUK23685.1\|4278848_4280363_+\|L-carnitine/gamma-butyrobetaine-antiporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
CP024127.1\|AUK23686.1\|4280393_4281536_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
CP024127.1\|AUK23681.1\|4275027_4275315_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
CP024127.1\|AUK23697.1\|4293675_4294626_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
CP024127.1\|AUK23683.1\|4276648_4277590_-\|protein-FixB	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
CP024127.1\|AUK23693.1\|4286864_4290086_-\|carbamoyl-phosphate-synthase-large-chain	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
CP024127.1\|AUK23694.1\|4290103_4291252_-\|carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
CP024127.1\|AUK23689.1\|4284617_4285403_+\|carnitinyl-CoA-dehydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	5.82869e-179
CP024127.1\|AUK23687.1\|4281664_4282882_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
CP024127.1\|AUK23690.1\|4285408_4285999_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	6.23334e-142
CP024127.1\|AUK23700.1\|4295695_4298512_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
CP024127.1\|AUK23699.1\|4295201_4295696_-\|signal-peptidase-II	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	8.43095e-76
CP024127.1\|AUK23688.1\|4282955_4284509_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
CP024127.1\|AUK23691.1\|4286207_4286603_-\|transcriptional-activatory-protein-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	1.42176e-74
CP024127.1\|AUK23682.1\|4275311_4276598_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
CP024127.1\|AUK23698.1\|4294627_4295077_-\|peptidylprolyl-isomerase	gnl\|CDD\|237908	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional.	9.11961e-106
CP024127.1\|AUK23696.1\|4292695_4293610_-\|ribonucleoside-hydrolase-RihC	gnl\|CDD\|182713	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional.	0

>CP024127.1|AUK23690.1|4285408_4285999_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRYHASLHETQPLRQMEENRPRLQGTTDVTPKR
>CP024127.1|AUK23689.1|4284617_4285403_+|carnitinyl-CoA-dehydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>CP024127.1|AUK23688.1|4282955_4284509_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSATTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATVTECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNCPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>CP024127.1|AUK23687.1|4281664_4282882_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIIPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>CP024127.1|AUK23686.1|4280393_4281536_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>CP024127.1|AUK23685.1|4278848_4280363_+|L-carnitine/gamma-butyrobetaine-antiporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>CP024127.1|AUK23684.1|4277604_4278375_-|protein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>CP024127.1|AUK23683.1|4276648_4277590_-|protein-FixB
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGVQAIQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>CP024127.1|AUK23682.1|4275311_4276598_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>CP024127.1|AUK23681.1|4275027_4275315_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>CP024127.1|AUK23691.1|4286207_4286603_-|transcriptional-activatory-protein-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>CP024127.1|AUK23692.1|4286637_4286817_+|hypothetical-protein
MTRFEAIKQGHIKIVDISIVCNFTVDKCELNPAYVIKNIDSPKDLLNGQKKTVLIREPY
>CP024127.1|AUK23693.1|4286864_4290086_-|carbamoyl-phosphate-synthase-large-chain
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLIQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>CP024127.1|AUK23694.1|4290103_4291252_-|carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVMAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>CP024127.1|AUK23695.1|4291707_4292529_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL
>CP024127.1|AUK23696.1|4292695_4293610_-|ribonucleoside-hydrolase-RihC
MRLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQLLHFWNAKIPLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMRAPEPVTLVAIGPLTNIALLLSQCPECKPHIRRLVIMGGSAGRGNCTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPELNRTGKMLHALFSHYRSGSMQSGLRMHDLCAIAWLVRPDLFTLKPCFVAVETQGEFTSGTTVVDIDGCLGKPANVQVALDLNVKGFQQWVAEVLALVP
>CP024127.1|AUK23697.1|4293675_4294626_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRYVVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKSAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVARLQQLGGGEAIPLEGREENIVFEVPKELRVDIREVD
>CP024127.1|AUK23698.1|4294627_4295077_-|peptidylprolyl-isomerase
MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEA
>CP024127.1|AUK23699.1|4295201_4295696_-|signal-peptidase-II
MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFPSLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSKAKKQ
>CP024127.1|AUK23700.1|4295695_4298512_-|isoleucine--tRNA-ligase
MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAAKKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPIELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVDQDALKAKFAVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKDLVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVVALLQEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVEVNGIQAWWDLDAKEILGDEADQYVKVPDTLDVWFDSGSTHSSVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMVVLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKADSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPGEREKYVFTGEWYEGLFGLADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELAAKLTALGDELRFVLLTSGATVADYNDAPADAQQSEVLKGLKVALSKAEGEKCPRCWHYTRDVGKVAEHAEICGRCVSNVAGDGEKRKFA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP038506	Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence	11835-11866	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	42147-42178	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	CP042641	Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence	36520-36551	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP034821	Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence	1557-1588	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP027443	Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence	9506-9537	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP027575	Escherichia coli strain 2013C-4081 plasmid unnamed2	94756-94787	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP027223	Escherichia coli strain 2015C-3101 plasmid unnamed2	65534-65565	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP030188	Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence	61916-61947	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP027590	Escherichia coli strain 2014C-3011 plasmid unnamed2	64165-64196	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	20286-20317	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	119284-119315	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_AP018798	Escherichia coli strain E2855 plasmid pE2855-2, complete sequence	85099-85130	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	CP012494	Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence	46688-46719	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	CP027320	Escherichia coli strain 2014C-3084 plasmid unnamed1	42116-42147	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NC_013370	Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence	87237-87268	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP026475	Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence	81853-81884	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	MN510445	Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence	70500-70531	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	MN510447	Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence	47861-47892	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP012491	Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence	62997-63028	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	MH422554	Escherichia phage P1, complete genome	87194-87225	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NC_050152	Enterobacteria phage P7, complete genome	93995-94026	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	MH445380	Escherichia virus P1 isolate transconjugant 2(L-II), complete genome	58645-58676	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NC_031129	Salmonella phage SJ46, complete genome	77363-77394	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	MH445381	Escherichia virus P1, complete genome	56870-56901	0	1.0
CP024127_5	5.1\|3113279\|40\|CP024127\|CRISPRCasFinder	3113279-3113318	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	17440-17471	2	0.938
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP017632	Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence	122310-122341	2	0.938
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP030285	Escherichia coli strain E308 plasmid pLKSZ04, complete sequence	6029-6060	2	0.938
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	NZ_CP036204	Escherichia coli strain L725 plasmid punnamed2, complete sequence	15121-15152	2	0.938
CP024127_2	2.5\|1033901\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033901-1033932	32	MN510446	Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence	131402-131433	2	0.938
CP024127_4	4.1\|2310176\|38\|CP024127\|CRISPRCasFinder	2310176-2310213	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP024127_1	1.17\|1006334\|32\|CP024127\|CRISPRCasFinder,CRT	1006334-1006365	32	NZ_LR134258	Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence	3574-3605	3	0.906
CP024127_1	1.17\|1006334\|32\|CP024127\|CRISPRCasFinder,CRT	1006334-1006365	32	LR134281	Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6	3567-3598	3	0.906
CP024127_1	1.17\|1006334\|32\|CP024127\|CRISPRCasFinder,CRT	1006334-1006365	32	KY271401	Klebsiella phage 1 LV-2017, complete genome	21043-21074	3	0.906
CP024127_1	1.7\|1006333\|33\|CP024127\|PILER-CR	1006333-1006365	33	NZ_LR134258	Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence	3574-3606	4	0.879
CP024127_1	1.7\|1006333\|33\|CP024127\|PILER-CR	1006333-1006365	33	LR134281	Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6	3567-3599	4	0.879
CP024127_1	1.7\|1006333\|33\|CP024127\|PILER-CR	1006333-1006365	33	KY271401	Klebsiella phage 1 LV-2017, complete genome	21043-21075	4	0.879
CP024127_1	1.13\|1006090\|32\|CP024127\|CRISPRCasFinder,CRT	1006090-1006121	32	KU686197	Synechococcus phage S-CAM3 isolate 0808SB25, complete genome	118383-118414	5	0.844
CP024127_1	1.13\|1006090\|32\|CP024127\|CRISPRCasFinder,CRT	1006090-1006121	32	KU686199	Synechococcus phage S-CAM3 isolate 1010CC42, complete genome	118389-118420	5	0.844
CP024127_1	1.13\|1006090\|32\|CP024127\|CRISPRCasFinder,CRT	1006090-1006121	32	KU686198	Synechococcus phage S-CAM3 isolate 0910TB04, complete genome	118373-118404	5	0.844
CP024127_1	1.17\|1006334\|32\|CP024127\|CRISPRCasFinder,CRT	1006334-1006365	32	KY653119	Morganella phage IME1369_02, complete genome	18217-18248	5	0.844
CP024127_1	1.3\|1006089\|33\|CP024127\|PILER-CR	1006089-1006121	33	KU686197	Synechococcus phage S-CAM3 isolate 0808SB25, complete genome	118383-118415	6	0.818
CP024127_1	1.3\|1006089\|33\|CP024127\|PILER-CR	1006089-1006121	33	KU686199	Synechococcus phage S-CAM3 isolate 1010CC42, complete genome	118389-118421	6	0.818
CP024127_1	1.3\|1006089\|33\|CP024127\|PILER-CR	1006089-1006121	33	KU686198	Synechococcus phage S-CAM3 isolate 0910TB04, complete genome	118373-118405	6	0.818
CP024127_1	1.7\|1006333\|33\|CP024127\|PILER-CR	1006333-1006365	33	KY653119	Morganella phage IME1369_02, complete genome	18216-18248	6	0.818
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24789-24826	6	0.842
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24902-24939	6	0.842
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4073-4110	6	0.842
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4072-4109	6	0.842
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4072-4109	6	0.842
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4072-4109	6	0.842
CP024127_1	1.20\|1006517\|32\|CP024127\|CRISPRCasFinder,CRT	1006517-1006548	32	MK814759	Gordonia phage Reyja, complete genome	4467-4498	8	0.75
CP024127_2	2.1\|1033657\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033657-1033688	32	MF773750	Mycobacterium phage OKCentral2016, complete genome	32038-32069	8	0.75
CP024127_2	2.1\|1033657\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033657-1033688	32	JX307704	Mycobacterium virus Goose, complete genome	32135-32166	8	0.75
CP024127_2	2.3\|1033779\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033779-1033810	32	NZ_CP042402	Weissella hellenica strain CBA3632 plasmid unnamed3, complete sequence	12282-12313	8	0.75
CP024127_2	2.4\|1033840\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033840-1033871	32	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	458381-458412	8	0.75
CP024127_2	2.4\|1033840\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033840-1033871	32	NZ_CP030762	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed2, complete sequence	130817-130848	8	0.75
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3331-3368	8	0.789
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3330-3367	8	0.789
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3330-3367	8	0.789
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3330-3367	8	0.789
CP024127_1	1.16\|1006273\|32\|CP024127\|CRISPRCasFinder,CRT	1006273-1006304	32	NC_007959	Nitrobacter hamburgensis X14 plasmid 1, complete sequence	246573-246604	9	0.719
CP024127_2	2.3\|1033779\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033779-1033810	32	CP003185	Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome	44776-44807	9	0.719
CP024127_2	2.3\|1033779\|32\|CP024127\|PILER-CR,CRISPRCasFinder,CRT	1033779-1033810	32	NC_019956	Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence	105005-105036	9	0.719
CP024127_6	6.2\|3285076\|33\|CP024127\|CRISPRCasFinder	3285076-3285108	33	MN855903	Myoviridae sp. isolate 490, partial genome	4171-4203	9	0.727
CP024127_6	6.4\|3285084\|33\|CP024127\|PILER-CR	3285084-3285116	33	MN855903	Myoviridae sp. isolate 490, partial genome	4171-4203	9	0.727
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14114-14151	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	51843-51880	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229388-229425	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239882-239919	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230794-230831	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211764-211801	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40383-40420	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	313601-313638	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386517-386554	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	397090-397127	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	404135-404172	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	114998-115035	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	40307-40344	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	MT230112	Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence	103-140	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31308-31345	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	8897-8934	9	0.763
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	17901-17938	9	0.763
CP024127_1	1.17\|1006334\|32\|CP024127\|CRISPRCasFinder,CRT	1006334-1006365	32	MF158039	Shigella phage Sf12, complete genome	4975-5006	10	0.688
CP024127_1	1.17\|1006334\|32\|CP024127\|CRISPRCasFinder,CRT	1006334-1006365	32	MF158042	Shigella phage Sd1, complete genome	938-969	10	0.688
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56040-56077	10	0.737
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP053046	Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence	58275-58312	10	0.737
CP024127_9	9.1\|4286089\|38\|CP024127\|CRISPRCasFinder	4286089-4286126	38	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30215-30252	10	0.737
CP024127_1	1.7\|1006333\|33\|CP024127\|PILER-CR	1006333-1006365	33	MF158039	Shigella phage Sf12, complete genome	4974-5006	11	0.667
CP024127_1	1.7\|1006333\|33\|CP024127\|PILER-CR	1006333-1006365	33	MF158042	Shigella phage Sd1, complete genome	937-969	11	0.667

1. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

2. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

3. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

4. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

5. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

6. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

7. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

8. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

9. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

10. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

11. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

12. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

13. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

14. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

15. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

16. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

17. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

18. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

19. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

20. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

21. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

22. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

23. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

24. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

25. spacer 5.1|3113279|40|CP024127|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

26. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

27. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

28. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

29. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

30. spacer 2.5|1033901|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacgttatgaaccgacattcatgt	Protospacer
************ * *****************

31. spacer 4.1|2310176|38|CP024127|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

32. spacer 1.17|1006334|32|CP024127|CRISPRCasFinder,CRT matches to NZ_LR134258 (Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence) position: , mismatch: 3, identity: 0.906

gtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
gggttcgcggcgttaacgctcaccagcatttc	Protospacer
* ***.*****.********************

33. spacer 1.17|1006334|32|CP024127|CRISPRCasFinder,CRT matches to LR134281 (Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6) position: , mismatch: 3, identity: 0.906

gtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
gggttcgcggcgttaacgctcaccagcatttc	Protospacer
* ***.*****.********************

34. spacer 1.17|1006334|32|CP024127|CRISPRCasFinder,CRT matches to KY271401 (Klebsiella phage 1 LV-2017, complete genome) position: , mismatch: 3, identity: 0.906

gtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
gggttcgcggcgttaacgctcaccagcatttc	Protospacer
* ***.*****.********************

35. spacer 1.7|1006333|33|CP024127|PILER-CR matches to NZ_LR134258 (Klebsiella aerogenes strain NCTC9644 plasmid 5, complete sequence) position: , mismatch: 4, identity: 0.879

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ggggttcgcggcgttaacgctcaccagcatttc	Protospacer
 * ***.*****.********************

36. spacer 1.7|1006333|33|CP024127|PILER-CR matches to LR134281 (Klebsiella aerogenes strain NCTC9793 genome assembly, plasmid: 6) position: , mismatch: 4, identity: 0.879

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ggggttcgcggcgttaacgctcaccagcatttc	Protospacer
 * ***.*****.********************

37. spacer 1.7|1006333|33|CP024127|PILER-CR matches to KY271401 (Klebsiella phage 1 LV-2017, complete genome) position: , mismatch: 4, identity: 0.879

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ggggttcgcggcgttaacgctcaccagcatttc	Protospacer
 * ***.*****.********************

38. spacer 1.13|1006090|32|CP024127|CRISPRCasFinder,CRT matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 5, identity: 0.844

ttttgtgattcagtaatcgtttgagtatgtac	CRISPR spacer
atttgtgatacagtaaacgtttgagtatctgc	Protospacer
 ******** ****** *********** *.*

39. spacer 1.13|1006090|32|CP024127|CRISPRCasFinder,CRT matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 5, identity: 0.844

ttttgtgattcagtaatcgtttgagtatgtac	CRISPR spacer
atttgtgatacagtaaacgtttgagtatctgc	Protospacer
 ******** ****** *********** *.*

40. spacer 1.13|1006090|32|CP024127|CRISPRCasFinder,CRT matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 5, identity: 0.844

ttttgtgattcagtaatcgtttgagtatgtac	CRISPR spacer
atttgtgatacagtaaacgtttgagtatctgc	Protospacer
 ******** ****** *********** *.*

41. spacer 1.17|1006334|32|CP024127|CRISPRCasFinder,CRT matches to KY653119 (Morganella phage IME1369_02, complete genome) position: , mismatch: 5, identity: 0.844

gtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ggttgtgcggcgttaacgctgaccagcatttc	Protospacer
*  * ******.******** ***********

42. spacer 1.3|1006089|33|CP024127|PILER-CR matches to KU686197 (Synechococcus phage S-CAM3 isolate 0808SB25, complete genome) position: , mismatch: 6, identity: 0.818

gttttgtgattcagtaatcgtttgagtatgtac	CRISPR spacer
aatttgtgatacagtaaacgtttgagtatctgc	Protospacer
. ******** ****** *********** *.*

43. spacer 1.3|1006089|33|CP024127|PILER-CR matches to KU686199 (Synechococcus phage S-CAM3 isolate 1010CC42, complete genome) position: , mismatch: 6, identity: 0.818

gttttgtgattcagtaatcgtttgagtatgtac	CRISPR spacer
aatttgtgatacagtaaacgtttgagtatctgc	Protospacer
. ******** ****** *********** *.*

44. spacer 1.3|1006089|33|CP024127|PILER-CR matches to KU686198 (Synechococcus phage S-CAM3 isolate 0910TB04, complete genome) position: , mismatch: 6, identity: 0.818

gttttgtgattcagtaatcgtttgagtatgtac	CRISPR spacer
aatttgtgatacagtaaacgtttgagtatctgc	Protospacer
. ******** ****** *********** *.*

45. spacer 1.7|1006333|33|CP024127|PILER-CR matches to KY653119 (Morganella phage IME1369_02, complete genome) position: , mismatch: 6, identity: 0.818

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
aggttgtgcggcgttaacgctgaccagcatttc	Protospacer
 *  * ******.******** ***********

46. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttgatgtcggatgcggcgtaaacgccttatccgaccta	Protospacer
* * *************.**************.***..

47. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttgatgtcggatgcggcgtaaacgccttatccgaccta	Protospacer
* * *************.**************.***..

48. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

49. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

50. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

51. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

52. spacer 1.20|1006517|32|CP024127|CRISPRCasFinder,CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

gagcctgacgagactactgaggccgttctgtc-	CRISPR spacer
aagcctgacgaggctactggggcca-gcggtgg	Protospacer
.***********.******.****.  * **

53. spacer 2.1|1033657|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to MF773750 (Mycobacterium phage OKCentral2016, complete genome) position: , mismatch: 8, identity: 0.75

gagcgtagagattctcgaaaccgatccggacg	CRISPR spacer
cctcgtagagatcctcgaagccgatctcggcg	Protospacer
   *********.******.******. *.**

54. spacer 2.1|1033657|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to JX307704 (Mycobacterium virus Goose, complete genome) position: , mismatch: 8, identity: 0.75

gagcgtagagattctcgaaaccgatccggacg	CRISPR spacer
cctcgtagagatcctcgaagccgatctcggcg	Protospacer
   *********.******.******. *.**

55. spacer 2.3|1033779|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042402 (Weissella hellenica strain CBA3632 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gtaataaaaaatattctatttctgctgaatca	CRISPR spacer
gtaataaaaaatctactatttctgattttaga	Protospacer
************ * ********* *     *

56. spacer 2.4|1033840|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cttgcgagcaaaagatccaggccgagaaagac	CRISPR spacer
aagccgagcaaaagatccaggcggtgaagggc	Protospacer
    ****************** * ***.*.*

57. spacer 2.4|1033840|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030762 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

cttgcgagcaaaagatccaggccgagaaagac	CRISPR spacer
aagccgagcaaaagatccaggcggtgaagggc	Protospacer
    ****************** * ***.*.*

58. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.789

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

59. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.789

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

60. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.789

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

61. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.789

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

62. spacer 1.16|1006273|32|CP024127|CRISPRCasFinder,CRT matches to NC_007959 (Nitrobacter hamburgensis X14 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

gcaaaaaccgggcaatcgcaaaaaggcgtaat	CRISPR spacer
gaaaaaaccgcccaatcgcaaaaagatgacga	Protospacer
* ********  *************..*  .

63. spacer 2.3|1033779|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to CP003185 (Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome) position: , mismatch: 9, identity: 0.719

gtaataaaaaatattctatttctgctgaatca	CRISPR spacer
ataataaataatattctgtttctgtgtgttta	Protospacer
.******* ********.******.  . *.*

64. spacer 2.3|1033779|32|CP024127|PILER-CR,CRISPRCasFinder,CRT matches to NC_019956 (Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence) position: , mismatch: 9, identity: 0.719

gtaataaaaaatattctatttctgctgaatca	CRISPR spacer
ataataaataatattctgtttctgtgtgttta	Protospacer
.******* ********.******.  . *.*

65. spacer 6.2|3285076|33|CP024127|CRISPRCasFinder matches to MN855903 (Myoviridae sp. isolate 490, partial genome) position: , mismatch: 9, identity: 0.727

gttcgctgcaaccgctagccaagacggtaggtt	CRISPR spacer
gttcgctgcaaccgttcgccaagaccacaaagg	Protospacer
**************.* ******** ..*..

66. spacer 6.4|3285084|33|CP024127|PILER-CR matches to MN855903 (Myoviridae sp. isolate 490, partial genome) position: , mismatch: 9, identity: 0.727

gttcgctgcaaccgctagccaagacggtaggtt	CRISPR spacer
gttcgctgcaaccgttcgccaagaccacaaagg	Protospacer
**************.* ******** ..*..

67. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tgattgccggatgcggcgtaaacgccttatccggccta	Protospacer
*...**.**********.**************..**..

68. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ctggtgccggatgcggcgtaaacgccttatccggccta	Protospacer
. * **.**********.**************..**..

69. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

70. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

71. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

72. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

73. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tttttgccggatgcggcgtaaacgccttatccggccta	Protospacer
*  .**.**********.**************..**..

74. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
aaaatgccggatgcggcgtaaacgccttatccggccta	Protospacer
 *. **.**********.**************..**..

75. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caagtgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*. **.**********.**************..**..

76. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caattgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*..**.**********.**************..**..

77. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttcttgccggatgcggcgtaaacgccttatccggccta	Protospacer
*  .**.**********.**************..**..

78. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ccactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
. .***.**********.**************. **..

79. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tttatgccggatgcggcgtaaacgccttatccggccta	Protospacer
*   **.**********.**************..**..

80. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
atgttgccggatgcggcgtaaacgccttatccggccta	Protospacer
  *.**.**********.**************..**..

81. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caaatgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*. **.**********.**************..**..

82. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cggttgccggatgcggcgtaaacgccttatccggccta	Protospacer
..*.**.**********.**************..**..

83. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
gacttgccggatgcggcgtaaacgccttatccggccac	Protospacer
 * .**.**********.**************..**

84. spacer 1.17|1006334|32|CP024127|CRISPRCasFinder,CRT matches to MF158039 (Shigella phage Sf12, complete genome) position: , mismatch: 10, identity: 0.688

gtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ttgtttgcagcattaacgctccccaagtgccg	Protospacer
 *******.************ ***.   ..

85. spacer 1.17|1006334|32|CP024127|CRISPRCasFinder,CRT matches to MF158042 (Shigella phage Sd1, complete genome) position: , mismatch: 10, identity: 0.688

gtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
ttgtttgcagcattaacgctctccaagtgccg	Protospacer
 *******.************ ***.   ..

86. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 10, identity: 0.737

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ccattgccggatgcggcgtaaacgccttatccggccta	Protospacer
. ..**.**********.**************..**..

87. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP053046 (Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence) position: , mismatch: 10, identity: 0.737

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
aggttgccggatgcggcgtaaacgccttatccggcata	Protospacer
 .*.**.**********.**************..* ..

88. spacer 9.1|4286089|38|CP024127|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 10, identity: 0.737

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caaatgccggatgcggcgtaaacgccttatctggccta	Protospacer
.*. **.**********.*************...**..

89. spacer 1.7|1006333|33|CP024127|PILER-CR matches to MF158039 (Shigella phage Sf12, complete genome) position: , mismatch: 11, identity: 0.667

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
attgtttgcagcattaacgctccccaagtgccg	Protospacer
  *******.************ ***.   ..

90. spacer 1.7|1006333|33|CP024127|PILER-CR matches to MF158042 (Shigella phage Sd1, complete genome) position: , mismatch: 11, identity: 0.667

tgtgtttgcggcattaacgctcaccagcatttc	CRISPR spacer
attgtttgcagcattaacgctctccaagtgccg	Protospacer
  *******.************ ***.   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1041386 : 1055346

Escherichia_phage(45.45%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK20668.1\|1041386_1042148_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0
AUK20669.1\|1042141_1042768_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
AUK20670.1\|1042907_1044047_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
AUK20671.1\|1044109_1045102_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
AUK20672.1\|1045195_1046560_-	GntP family transporter	NA	NA	NA	NA
AUK20673.1\|1046648_1047425_-	hypothetical protein	NA	NA	NA	NA
AUK20674.1\|1047429_1048068_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
AUK20675.1\|1048064_1049327_-	hypothetical protein	A0A077SLJ7	Escherichia_phage	8.3e-135	61.0
AUK20676.1\|1049323_1050232_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
AUK20677.1\|1050427_1051195_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.5e-70	56.7
AUK20678.1\|1051245_1051545_-	serine/threonine protein phosphatase	C6ZCW7	Enterobacteria_phage	6.7e-19	45.8
AUK20679.1\|1052226_1052679_-	Ser/Thr protein phosphatase	A0A077SLQ6	Escherichia_phage	1.9e-25	47.2
AUK20680.1\|1052784_1055346_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	2.3e-30	20.6

DBSCAN-SWA_2

1135066 : 1146269

Enterobacteria_phage(77.78%)

transposase,integrase

attL 1134047:1134060|attR 1147638:1147651

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1134047:1134060	attL	NA	NA	NA	NA
AUK20751.1\|1135066_1137400_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	98.5
AUK20752.1\|1137414_1137735_-	hypothetical protein	NA	NA	NA	NA
AUK24412.1\|1137870_1138326_-	hypothetical protein	Q7M298	Enterobacteria_phage	3.0e-63	97.3
AUK20753.1\|1138369_1139583_-\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	2.9e-169	100.0
AUK20754.1\|1139634_1139919_-	Derepression protein	Q7M2A0	Enterobacteria_phage	3.2e-47	97.9
AUK20755.1\|1139911_1140502_-	Ash-like/host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.3e-69	99.3
AUK20756.1\|1140498_1140765_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
AUK20757.1\|1141317_1142052_+	glycoprotein 3	Q7M2A2	Enterobacteria_phage	6.1e-130	98.8
AUK20758.1\|1142048_1142549_+	transactivation protein	NA	NA	NA	NA
AUK20759.1\|1142622_1143195_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	4.2e-94	96.2
AUK20760.1\|1143484_1144384_+	hypothetical protein	NA	NA	NA	NA
AUK20761.1\|1144383_1145043_+	hypothetical protein	NA	NA	NA	NA
AUK20762.1\|1145075_1146269_-\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	8.7e-102	47.6
1147638:1147651	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1669501 : 1750232

Enterobacteria_phage(38.27%)

transposase,capsid,lysis,head,tail,tRNA,holin,terminase,integrase

attL 1657383:1657442|attR 1746092:1746859

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1657383:1657442	attL	NA	NA	NA	NA
AUK21220.1\|1669501_1670428_+	ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-23	30.8
AUK21221.1\|1670432_1671164_+	osmoprotectant uptake system permease	NA	NA	NA	NA
AUK21222.1\|1671144_1671252_-	hypothetical protein	NA	NA	NA	NA
AUK21223.1\|1671311_1671998_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.5e-101	98.4
AUK21224.1\|1672033_1673320_-\|integrase	site-specific integrase	A0A0N7KZF5	Stx2-converting_phage	5.5e-251	99.3
AUK21225.1\|1673353_1673608_-	excisionase	Q859D3	Escherichia_coli_phage	3.0e-44	100.0
AUK21226.1\|1673626_1673761_-	hypothetical protein	H6WZF8	Escherichia_phage	2.2e-22	100.0
AUK21227.1\|1673764_1674007_-	DUF4222 domain-containing protein	H6WZF9	Escherichia_phage	1.2e-37	100.0
AUK21228.1\|1674094_1674598_-	DUF551 domain-containing protein	A0A088CE95	Shigella_phage	1.0e-56	43.0
AUK21229.1\|1674599_1675286_-	hypothetical protein	H6WZG2	Escherichia_phage	3.2e-117	84.8
AUK21230.1\|1675602_1675884_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	5.5e-47	98.9
AUK21231.1\|1675894_1676086_-	hypothetical protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
AUK24427.1\|1676058_1676241_-	DUF1317 domain-containing protein	A0A0P0ZD61	Stx2-converting_phage	2.8e-28	98.3
AUK21232.1\|1676237_1676918_-	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	1.0e-131	99.1
AUK21233.1\|1676914_1677700_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	2.0e-147	99.2
AUK21234.1\|1677705_1678002_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
AUK21235.1\|1677970_1678123_-	host-nuclease inhibitor protein Gam	Q08J51	Stx2-converting_phage	5.2e-20	94.0
AUK21236.1\|1678077_1678347_-	host cell division inhibitory peptide Kil	M1FN78	Enterobacteria_phage	2.1e-40	95.5
AUK21237.1\|1678426_1678795_-	DUF2528 domain-containing protein	K7PGR6	Enterobacteria_phage	2.6e-65	99.2
AUK21238.1\|1678945_1679416_-	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	8.2e-88	99.4
AUK21239.1\|1679547_1680760_+\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	2.9e-169	100.0
AUK21240.1\|1681175_1681559_-	antitermination protein	G9L671	Escherichia_phage	6.7e-64	99.2
AUK21241.1\|1682065_1682686_-	hypothetical protein	A4KWT4	Enterobacteria_phage	6.9e-50	99.0
AUK21242.1\|1682682_1683117_-	hypothetical protein	A4KWT5	Enterobacteria_phage	3.5e-77	99.3
AUK21243.1\|1683187_1683529_-	DUF3024 domain-containing protein	G9L675	Escherichia_phage	2.5e-62	99.1
AUK21244.1\|1683589_1684294_-	XRE family transcriptional regulator	A0A0P0ZE37	Stx2-converting_phage	1.1e-133	100.0
AUK21245.1\|1684407_1684641_+	transcriptional regulator	A0A0P0ZDD7	Stx2-converting_phage	8.0e-36	100.0
AUK21246.1\|1684779_1685076_+	hypothetical protein	G9L678	Escherichia_phage	1.2e-47	99.0
AUK21247.1\|1685108_1686047_+	Replication protein O	A0A1I9LJP3	Stx_converting_phage	1.3e-172	100.0
AUK21248.1\|1686043_1686745_+	Replication protein P	Q6H9X6	Enterobacteria_phage	4.9e-129	99.1
AUK21249.1\|1686741_1687032_+	protein ren	A0A0N6WES4	Escherichia_phage	5.7e-47	100.0
AUK21250.1\|1687102_1687381_+	hypothetical protein	Q9EYB9	Enterobacteria_phage	4.4e-49	100.0
AUK21251.1\|1687513_1687729_+	hypothetical protein	A0A0N7KZ98	Stx2-converting_phage	7.7e-33	100.0
AUK21252.1\|1687739_1687976_+	restriction alleviation protein, Lar family	Q8HA09	Enterobacteria_phage	1.2e-39	100.0
AUK21253.1\|1687932_1688379_+	recombination protein NinB	Q8VNP6	Enterobacteria_phage	1.2e-80	98.6
AUK21254.1\|1688375_1688903_+	phage N-6-adenine-methyltransferase	Q9ZWX6	Enterobacteria_phage	7.3e-101	100.0
AUK21255.1\|1688899_1689082_+	NinE family protein	Q8H9Z6	Enterobacteria_phage	1.3e-28	98.3
AUK21256.1\|1689585_1691358_-	hypothetical protein	A0A1U9AJG3	Stx1_converting_phage	0.0e+00	99.3
AUK21257.1\|1691921_1692488_+	endonuclease	A0A1U9AJK5	Stx1_converting_phage	6.6e-108	99.5
AUK21258.1\|1692462_1693065_+	protein NinG	A0A1U9AJF8	Stx1_converting_phage	3.9e-90	94.6
AUK21259.1\|1693061_1693733_+	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	2.4e-133	100.0
AUK21260.1\|1693723_1694212_+	antiterminator	Q5TJL7	Enterobacteria_phage	7.0e-90	100.0
AUK21261.1\|1694853_1695282_+	tellurite resistance protein	H6WZJ6	Escherichia_phage	6.4e-63	97.1
AUK21262.1\|1695583_1695712_+	hypothetical protein	NA	NA	NA	NA
AUK21263.1\|1695760_1697611_+	9-O-acetyl-N-acetylneuraminic acid deacetylase	B6DZ89	Enterobacteria_phage	0.0e+00	98.7
AUK21264.1\|1697894_1698110_+\|holin	holin	Q6H9V8	Enterobacteria_phage	3.8e-32	95.8
AUK21265.1\|1698114_1698459_+	DUF1327 domain-containing protein	A0A0P0ZD64	Stx2-converting_phage	2.1e-56	97.4
AUK21266.1\|1698509_1699043_+	lysozyme	Q6H9V6	Enterobacteria_phage	1.3e-100	96.0
AUK21267.1\|1699316_1700012_+	phage antirepressor protein	Q5MBW0	Stx1-converting_phage	2.8e-124	99.1
AUK24428.1\|1700240_1700708_+\|lysis	lysis protein	Q7AYI6	Enterobacteria_phage	2.0e-73	94.2
AUK24429.1\|1700737_1700938_+	hypothetical protein	Q9T1L1	Enterobacteria_phage	5.0e-10	76.9
AUK21268.1\|1700859_1701111_+	hypothetical protein	H6WZK4	Escherichia_phage	3.2e-30	95.7
AUK21269.1\|1701046_1701373_+	hypothetical protein	H6WZK5	Escherichia_phage	6.3e-55	98.1
AUK21270.1\|1701504_1701705_-	DUF3950 domain-containing protein	H6WZK6	Escherichia_phage	3.7e-29	95.5
AUK21271.1\|1701746_1702112_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	5.8e-65	99.2
AUK21272.1\|1702401_1702965_+\|terminase	terminase small subunit	B6DZ97	Enterobacteria_phage	3.6e-82	93.5
AUK21273.1\|1702961_1704623_+\|terminase	terminase	A0A0N7KZG0	Stx2-converting_phage	0.0e+00	98.9
AUK21274.1\|1704686_1706624_+\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	99.7
AUK24430.1\|1706668_1706890_+	hypothetical protein	H6WZL1	Escherichia_phage	9.9e-36	98.6
AUK21275.1\|1709416_1709743_+\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	2.7e-53	98.1
AUK21276.1\|1709752_1710103_+\|head,tail	head-tail adaptor protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
AUK21277.1\|1710099_1710546_+	hypothetical protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
AUK21278.1\|1710542_1710887_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
AUK21279.1\|1710945_1711662_+\|tail	phage tail protein	A0A0P0ZD29	Stx2-converting_phage	2.3e-126	97.9
AUK21280.1\|1711667_1712042_+\|tail	phage tail protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
AUK21281.1\|1712065_1712347_+\|tail	phage tail protein	A0A0P0ZDE6	Stx2-converting_phage	1.3e-45	100.0
AUK21282.1\|1715632_1715974_+\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	2.5e-62	99.1
AUK21283.1\|1715973_1716672_+\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	8.1e-132	98.3
AUK21284.1\|1716682_1717426_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.7e-148	98.0
AUK21285.1\|1717323_1718004_+\|tail	phage tail protein	Q9EYE5	Enterobacteria_phage	4.8e-113	93.3
AUK21286.1\|1718253_1721733_+\|tail	phage tail protein	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	87.8
AUK21287.1\|1721800_1722400_+	Ail/Lom family protein	A0A0P0ZE39	Stx2-converting_phage	9.7e-110	98.5
AUK21288.1\|1722464_1723778_+\|tail	phage tail protein	A0A0P0ZCC1	Stx2-converting_phage	1.9e-81	98.2
AUK21289.1\|1723779_1724049_+\|tail	phage tail protein	Q687E5	Enterobacteria_phage	2.7e-43	95.5
AUK21290.1\|1724339_1724744_+	type III effector	A5LH48	Enterobacteria_phage	1.3e-68	96.3
AUK21291.1\|1725041_1726283_-	hypothetical protein	H6WZN2	Escherichia_phage	7.7e-218	85.2
AUK21292.1\|1726551_1726740_+	hypothetical protein	NA	NA	NA	NA
AUK21293.1\|1726934_1728143_-	secretion protein EspV	H6WZN3	Escherichia_phage	1.0e-230	99.5
AUK21294.1\|1728347_1728596_-	damage-inducible protein DinI	H6WZN4	Escherichia_phage	2.4e-38	100.0
AUK21295.1\|1729110_1730796_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
AUK21296.1\|1730792_1731512_+	DNA-binding response regulator	NA	NA	NA	NA
AUK21297.1\|1731558_1732029_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
AUK21298.1\|1732069_1732531_-	hypothetical protein	Q9EYF5	Enterobacteria_phage	1.6e-75	98.7
AUK21299.1\|1732655_1734656_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.6
AUK21300.1\|1734652_1735789_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.9e-162	97.7
AUK21301.1\|1735781_1738061_-	hypothetical protein	NA	NA	NA	NA
AUK21302.1\|1738071_1739160_-	MoxR family ATPase	NA	NA	NA	NA
AUK21303.1\|1739466_1739784_-	hypothetical protein	NA	NA	NA	NA
AUK21304.1\|1739844_1743477_-	DUF4132 domain-containing protein	NA	NA	NA	NA
AUK21305.1\|1748198_1750232_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.8
1746092:1746859	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1826648 : 1836994

Enterobacteria_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK21372.1\|1826648_1828043_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.7e-19	32.3
AUK21373.1\|1828217_1829111_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	1.0e-46	42.0
AUK21374.1\|1829147_1829411_-	hypothetical protein	NA	NA	NA	NA
AUK21375.1\|1829483_1830569_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.6e-102	54.2
AUK21376.1\|1830568_1831468_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.3e-28	34.3
AUK21377.1\|1831525_1832404_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.8e-105	62.7
AUK21378.1\|1832408_1832957_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.2e-51	55.5
AUK21379.1\|1832963_1834037_+	glycosyltransferase WbsX family protein	A0A1V0SDW6	Indivirus	7.8e-25	25.8
AUK21380.1\|1834029_1834761_+	hypothetical protein	M1HJ62	Paramecium_bursaria_Chlorella_virus	1.7e-07	35.1
AUK21381.1\|1834753_1836241_+	O115 family O-antigen flippase	NA	NA	NA	NA
AUK21382.1\|1836300_1836994_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.3e-121	88.3

DBSCAN-SWA_5

1890081 : 1975608

Enterobacteria_phage(43.9%)

transposase,capsid,lysis,head,tail,holin,terminase,portal,integrase

attL 1892645:1892663|attR 1960380:1960398

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK21431.1\|1890081_1891233_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	36.4
AUK21432.1\|1891189_1891546_-\|transposase	IS3 family transposase	U5P4I9	Shigella_phage	1.3e-32	91.2
AUK21433.1\|1891802_1893015_+\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	2.9e-169	100.0
1892645:1892663	attL	NA	NA	NA	NA
AUK21434.1\|1893637_1893760_+	cobalamin biosynthesis protein	NA	NA	NA	NA
AUK21435.1\|1893911_1894457_+	bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase	NA	NA	NA	NA
AUK21436.1\|1894453_1895197_+	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
AUK21437.1\|1895208_1896288_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
AUK21438.1\|1896352_1897285_+	L,D-transpeptidase	NA	NA	NA	NA
AUK21439.1\|1897742_1898660_+	nitrogen assimilation regulatory protein nac	NA	NA	NA	NA
AUK24440.1\|1898761_1899712_+	transcriptional regulator Cbl	NA	NA	NA	NA
AUK21440.1\|1899985_1901473_+	FMN/FAD transporter	NA	NA	NA	NA
AUK21441.1\|1901844_1902057_+	hypothetical protein	NA	NA	NA	NA
AUK21442.1\|1902101_1902818_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AUK21443.1\|1903160_1904615_-	AMP nucleosidase	NA	NA	NA	NA
AUK21444.1\|1904716_1906033_-	MFS transporter	NA	NA	NA	NA
AUK21445.1\|1906347_1907400_+	hypothetical protein	NA	NA	NA	NA
AUK21446.1\|1907527_1908004_-	invasin	NA	NA	NA	NA
AUK21447.1\|1908016_1909525_-	adhesin	NA	NA	NA	NA
AUK21448.1\|1909521_1909692_-	adhesin	NA	NA	NA	NA
AUK21449.1\|1909618_1910425_-	hypothetical protein	NA	NA	NA	NA
AUK21450.1\|1911018_1913040_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
AUK21451.1\|1913171_1914749_-	2,3-dihydroxybenzoate-AMP ligase	NA	NA	NA	NA
AUK21452.1\|1914752_1915556_-	thioesterase	NA	NA	NA	NA
AUK21453.1\|1915552_1916653_-	thiazolinyl imide reductase	NA	NA	NA	NA
AUK21454.1\|1916649_1926141_-	polyketide synthase	D0R7J2	Paenibacillus_phage	1.6e-49	36.8
AUK21455.1\|1926228_1932336_-	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	1.8e-33	27.3
AUK21456.1\|1932526_1933486_-	AraC family transcriptional regulator	NA	NA	NA	NA
AUK21457.1\|1933652_1935455_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.5e-32	27.6
AUK21458.1\|1935441_1937244_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.1e-22	26.5
AUK21459.1\|1937236_1938517_+	MFS transporter	NA	NA	NA	NA
AUK21460.1\|1938544_1939849_+	salicylate synthase	NA	NA	NA	NA
AUK21461.1\|1940042_1941305_-\|integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	3.1e-73	39.0
AUK24441.1\|1941642_1942440_-	protein MtfA	NA	NA	NA	NA
AUK21462.1\|1942675_1943701_-\|integrase	integrase	A0A192Y7M7	Salmonella_phage	2.0e-102	57.9
AUK24442.1\|1944547_1944694_+	antitermination protein	K7PKS8	Enterobacteria_phage	3.3e-11	73.2
AUK21463.1\|1945184_1945451_+	hypothetical protein	NA	NA	NA	NA
AUK21464.1\|1945864_1947715_+	9-O-acetyl-N-acetylneuraminic acid deacetylase	B6DZ89	Enterobacteria_phage	0.0e+00	98.2
AUK21465.1\|1947993_1948155_-	hypothetical protein	NA	NA	NA	NA
AUK21466.1\|1948153_1948369_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	1.7e-32	97.2
AUK21467.1\|1948331_1948676_-	hypothetical protein	NA	NA	NA	NA
AUK21468.1\|1948624_1948861_-	hypothetical protein	NA	NA	NA	NA
AUK21469.1\|1948829_1949024_+	hypothetical protein	NA	NA	NA	NA
AUK21470.1\|1949056_1949590_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	3.1e-99	94.4
AUK21471.1\|1949810_1949924_+	hypothetical protein	A0A2L1IV24	Escherichia_phage	6.6e-12	100.0
AUK21472.1\|1949925_1950393_+\|lysis	lysis protein	Q7AYI6	Enterobacteria_phage	6.3e-72	92.9
AUK21473.1\|1950475_1950616_+	hypothetical protein	NA	NA	NA	NA
AUK21474.1\|1950858_1951173_+	PerC family transcriptional regulator	NA	NA	NA	NA
AUK21475.1\|1951254_1951479_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	2.9e-19	88.7
AUK21476.1\|1951881_1952391_+\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
AUK21477.1\|1952362_1954291_+\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	2.3e-261	66.0
AUK21478.1\|1954274_1954481_+\|tail	phage tail protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
AUK21479.1\|1954477_1956070_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	7.1e-184	60.9
AUK21480.1\|1956059_1957565_+	scaffolding protein	A0A2I6TC87	Escherichia_phage	1.6e-100	54.2
AUK21481.1\|1957601_1957949_+\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.6e-22	58.1
AUK21482.1\|1958006_1959035_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	3.9e-114	60.7
AUK21483.1\|1959038_1959461_+	hypothetical protein	NA	NA	NA	NA
AUK24443.1\|1959453_1959807_+\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-41	70.1
AUK21484.1\|1959822_1960356_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.2e-57	65.1
AUK21485.1\|1960352_1960748_+\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	3.9e-59	83.2
1960380:1960398	attR	NA	NA	NA	NA
AUK21486.1\|1960755_1961508_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	2.7e-133	97.6
AUK21487.1\|1961521_1961953_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	3.7e-42	68.8
AUK21488.1\|1961979_1962393_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	7.8e-42	81.2
AUK21489.1\|1962373_1964953_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	82.7
AUK21490.1\|1964949_1965279_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	2.2e-55	95.4
AUK21491.1\|1965278_1965977_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	2.1e-132	99.1
AUK21492.1\|1965982_1966726_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.3e-148	97.6
AUK21493.1\|1966623_1967304_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	1.9e-114	93.8
AUK21494.1\|1967257_1967464_+	hypothetical protein	NA	NA	NA	NA
AUK21495.1\|1967494_1968022_-	superoxide dismutase	Q9MC02	Salmonella_phage	2.1e-60	61.0
AUK21496.1\|1968155_1971632_+\|tail	phage tail protein	Q6H9T2	Enterobacteria_phage	0.0e+00	96.9
AUK24444.1\|1971700_1972324_+	hypothetical protein	A0A1U8QHD6	Enterobacteria_phage	1.7e-69	61.4
AUK21497.1\|1972388_1973702_+\|tail	phage tail protein	H6WZM9	Escherichia_phage	1.2e-75	97.3
AUK21498.1\|1973703_1973973_+\|tail	phage tail protein	B6DZB8	Enterobacteria_phage	9.3e-44	97.8
AUK21499.1\|1974149_1975130_+	type III secretion system effector NleB	Q8HAB2	Salmonella_phage	2.9e-87	49.5
AUK24445.1\|1975190_1975454_+	T3SS effector NleC domain protein	NA	NA	NA	NA
AUK21500.1\|1975476_1975608_+	hypothetical protein	K7PMH7	Enterobacteria_phage	1.5e-07	76.5

DBSCAN-SWA_6

2027846 : 2063174

Enterobacteria_phage(86.11%)

capsid,portal,tail,holin,terminase,plate,integrase

attL 2026778:2026837|attR 2063281:2063404

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2026778:2026837	attL	NA	NA	NA	NA
AUK21556.1\|2027846_2027987_-	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	7.0e-19	100.0
AUK21557.1\|2028177_2028438_-	hypothetical protein	NA	NA	NA	NA
AUK24449.1\|2028705_2030145_+	hypothetical protein	NA	NA	NA	NA
AUK21558.1\|2030275_2031385_-	late control protein	A0A0A7NQ97	Enterobacteria_phage	8.2e-195	94.3
AUK21559.1\|2031542_2032727_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	8.1e-225	99.0
AUK21560.1\|2032726_2033239_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.2e-93	100.0
AUK21561.1\|2033293_2033659_+\|tail	phage tail protein	A0A0A7NPZ0	Enterobacteria_phage	3.8e-56	97.5
AUK21562.1\|2033586_2033823_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.9e-22	98.0
AUK21563.1\|2033809_2036617_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	95.0
AUK21564.1\|2036623_2037118_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	7.3e-87	98.2
AUK21565.1\|2037159_2037693_-\|tail	tail fiber assembly protein	A0A077SL44	Escherichia_phage	6.3e-68	70.6
AUK21566.1\|2037695_2040155_-\|tail	phage tail protein	U5N099	Enterobacteria_phage	1.8e-173	57.1
AUK21567.1\|2040157_2040688_-\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	9.6e-93	98.8
AUK21568.1\|2040680_2041577_-\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	2.3e-155	98.3
AUK21569.1\|2041580_2041931_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	100.0
AUK21570.1\|2041927_2042509_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	8.0e-101	96.4
AUK21571.1\|2042505_2043141_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	3.4e-113	98.6
AUK21572.1\|2043133_2043601_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	4.5e-86	99.4
AUK21573.1\|2043587_2043776_-	hypothetical protein	NA	NA	NA	NA
AUK21574.1\|2043738_2044146_-	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	4.2e-64	95.6
AUK21575.1\|2044142_2044535_-	peptidase M15	A0A0A7NQ86	Enterobacteria_phage	1.3e-70	99.2
AUK21576.1\|2044531_2044855_-\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	4.7e-50	98.1
AUK21577.1\|2044857_2045058_-\|tail	phage tail protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
AUK21578.1\|2045057_2045552_-\|capsid	capsid assembly protein	A0A0A7NPU2	Enterobacteria_phage	3.0e-88	98.2
AUK21579.1\|2045653_2046454_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	1.9e-124	88.3
AUK21580.1\|2046499_2047552_-\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	6.6e-194	97.1
AUK21581.1\|2047575_2048412_-\|capsid	phage capsid protein	A0A0A7NRY7	Enterobacteria_phage	2.7e-150	99.6
AUK21582.1\|2048566_2050318_+	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.8
AUK21583.1\|2050317_2051364_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	2.6e-206	99.7
AUK21584.1\|2051857_2054083_-	peptidase S8 and S53, subtilisin, kexin, sedolisin	NA	NA	NA	NA
AUK21585.1\|2054106_2055228_-	ATPase	R4TQL5	Phaeocystis_globosa_virus	3.7e-17	29.5
AUK21586.1\|2055408_2058192_-	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	86.6
AUK21587.1\|2058188_2058578_-	inositol monophosphatase	NA	NA	NA	NA
AUK21588.1\|2058686_2058905_-	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	9.6e-07	46.7
AUK21589.1\|2058901_2059105_-	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	9.5e-25	80.6
AUK21590.1\|2059302_2059545_-	DUF4754 domain-containing protein	A0A0A7NQ71	Enterobacteria_phage	5.2e-38	98.8
AUK21591.1\|2059556_2059835_-	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	1.6e-35	81.5
AUK21592.1\|2059845_2060196_-	DUF4761 domain-containing protein	A0A0A7NV42	Enterobacteria_phage	2.1e-48	80.2
AUK21593.1\|2060217_2060421_-	DNA-binding protein	P79674	Haemophilus_phage	3.1e-07	45.2
AUK21594.1\|2060437_2060644_-	hypothetical protein	NA	NA	NA	NA
AUK21595.1\|2060719_2061124_+	transcriptional regulator	Q6QID2	Burkholderia_phage	9.4e-24	53.8
AUK21596.1\|2061139_2061790_+	hypothetical protein	NA	NA	NA	NA
AUK21597.1\|2061819_2062167_+	DUF2511 domain-containing protein	NA	NA	NA	NA
AUK21598.1\|2062172_2063174_+\|integrase	integrase	Q94N03	Haemophilus_virus	4.2e-105	58.5
2063281:2063404	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2384994 : 2399349

uncultured_Caudovirales_phage(100.0%)

protease,capsid,head,tail,terminase,portal,integrase

attL 2373800:2373815|attR 2396861:2396876

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2373800:2373815	attL	NA	NA	NA	NA
AUK21903.1\|2384994_2386224_+\|integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	3.2e-131	55.6
AUK21904.1\|2386598_2386787_+	AlpA family transcriptional regulator	A0A2H4JB58	uncultured_Caudovirales_phage	2.0e-13	66.0
AUK21905.1\|2386844_2387636_+	hypothetical protein	NA	NA	NA	NA
AUK21906.1\|2387661_2387859_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
AUK21907.1\|2387851_2388064_+	hypothetical protein	NA	NA	NA	NA
AUK21908.1\|2388053_2388293_+	hypothetical protein	NA	NA	NA	NA
AUK21909.1\|2388285_2388519_+	hypothetical protein	NA	NA	NA	NA
AUK21910.1\|2388511_2388745_+	hypothetical protein	NA	NA	NA	NA
AUK21911.1\|2388750_2389050_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AUK21912.1\|2389046_2390447_+	DNA primase	A0A2H4JFA4	uncultured_Caudovirales_phage	9.6e-116	49.6
AUK21913.1\|2390647_2390899_+	hypothetical protein	NA	NA	NA	NA
AUK21914.1\|2390895_2391306_+	single-stranded DNA-binding protein	NA	NA	NA	NA
AUK21915.1\|2391316_2391589_+	PerC family transcriptional regulator	NA	NA	NA	NA
AUK21916.1\|2391545_2391674_+	trigger factor	NA	NA	NA	NA
AUK21917.1\|2391715_2391940_+	hypothetical protein	NA	NA	NA	NA
AUK21918.1\|2392232_2393390_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	2.1e-137	64.9
AUK21919.1\|2393429_2394002_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-61	63.5
AUK21920.1\|2394003_2395215_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.9e-189	79.5
AUK21921.1\|2396023_2396326_+\|head,tail	head-tail adaptor protein	A0A2H4JHK5	uncultured_Caudovirales_phage	2.7e-28	56.4
AUK21922.1\|2396322_2396619_+	hypothetical protein	A0A2H4JD08	uncultured_Caudovirales_phage	2.4e-32	65.3
AUK21923.1\|2396618_2397059_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	1.8e-60	72.6
2396861:2396876	attR	NA	NA	NA	NA
AUK24467.1\|2397051_2397225_+	hypothetical protein	NA	NA	NA	NA
AUK21924.1\|2397347_2397704_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-52	81.4
AUK21925.1\|2397687_2399349_+\|terminase	terminase	A0A2H4JB64	uncultured_Caudovirales_phage	2.0e-277	81.6

DBSCAN-SWA_8

2413912 : 2489342

Stx2-converting_phage(31.58%)

transposase,capsid,lysis,head,tail,holin,terminase,integrase

attL 2406381:2406397|attR 2450246:2450262

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2406381:2406397	attL	NA	NA	NA	NA
AUK21941.1\|2413912_2416339_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.0e-213	49.1
AUK21942.1\|2416537_2416843_-	DUF1161 domain-containing protein	NA	NA	NA	NA
AUK24470.1\|2416950_2417631_+	hypothetical protein	NA	NA	NA	NA
AUK21943.1\|2417663_2418224_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
AUK21944.1\|2418258_2418600_-	hypothetical protein	NA	NA	NA	NA
AUK21945.1\|2418734_2419061_+	hypothetical protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
AUK21946.1\|2419097_2419286_+	hypothetical protein	NA	NA	NA	NA
AUK21947.1\|2419266_2420481_+	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
AUK21948.1\|2420492_2421512_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	3.7e-16	25.9
AUK21949.1\|2421569_2421680_+	transporter	NA	NA	NA	NA
AUK21950.1\|2421699_2422995_-\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	2.5e-155	62.3
AUK21951.1\|2423014_2423266_-	DNA-binding protein	S4TND0	Salmonella_phage	2.4e-14	48.7
AUK21952.1\|2423335_2425810_-	exonuclease	A0A192Y6E0	Salmonella_phage	1.9e-58	58.0
AUK21953.1\|2425903_2426095_-	DUF1482 domain-containing protein	NA	NA	NA	NA
AUK21954.1\|2426091_2426280_-	cell division inhibition protein DicB	NA	NA	NA	NA
AUK21955.1\|2426847_2427066_-	hypothetical protein	NA	NA	NA	NA
AUK21956.1\|2427137_2427437_-	hypothetical protein	NA	NA	NA	NA
AUK21957.1\|2427420_2427579_-	hypothetical protein	NA	NA	NA	NA
AUK21958.1\|2427763_2428183_-	hypothetical protein	K7PK07	Enterobacteria_phage	8.8e-25	65.1
AUK21959.1\|2428283_2428565_+	Cro/Cl family transcriptional regulator	K7PHA1	Enterobacteria_phage	6.5e-24	72.6
AUK21960.1\|2428548_2428974_+	Rha family transcriptional regulator	NA	NA	NA	NA
AUK21961.1\|2429045_2430116_+	phage replisome organizer	A0A088CD36	Shigella_phage	1.3e-64	66.2
AUK21962.1\|2430122_2430863_+	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	9.2e-126	90.7
AUK21963.1\|2430888_2431659_+	hypothetical protein	A0A0U2SAW4	Escherichia_phage	4.8e-85	67.6
AUK21964.1\|2431674_2432070_+	DUF977 domain-containing protein	A0A0U2QQN3	Escherichia_phage	1.0e-30	51.4
AUK21965.1\|2432126_2432711_+	DUF551 domain-containing protein	A0A0P0ZD75	Stx2-converting_phage	5.5e-33	83.5
AUK21966.1\|2432826_2432931_+	hypothetical protein	NA	NA	NA	NA
AUK21967.1\|2432919_2433075_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	1.9e-09	83.8
AUK21968.1\|2433119_2433332_+	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	3.1e-18	68.6
AUK21969.1\|2433499_2433778_+	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
AUK21970.1\|2433779_2434838_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.7e-88	47.7
AUK21971.1\|2434838_2435177_+	hypothetical protein	V5URS4	Shigella_phage	1.9e-30	62.9
AUK21972.1\|2435211_2435766_+	antiterminator	A0A0U2S606	Escherichia_phage	8.0e-66	67.4
AUK21973.1\|2435990_2436188_+	TrmB family transcriptional regulator	S5MQK8	Escherichia_phage	2.6e-27	96.9
AUK21974.1\|2436322_2437036_+	AraC family transcriptional regulator	NA	NA	NA	NA
AUK21975.1\|2437486_2437918_+	tellurite resistance protein	H6WZJ6	Escherichia_phage	3.3e-67	97.2
AUK21976.1\|2437808_2438075_+	hypothetical protein	NA	NA	NA	NA
AUK21977.1\|2438481_2440335_+	9-O-acetyl-N-acetylneuraminic acid deacetylase	B6DZ89	Enterobacteria_phage	0.0e+00	96.1
AUK21978.1\|2440484_2440700_+\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	5.9e-33	98.6
AUK21979.1\|2440704_2441049_+	DUF1327 domain-containing protein	A0A0P0ZD64	Stx2-converting_phage	2.9e-58	99.1
AUK21980.1\|2441099_2441633_+	lysozyme	Q6H9V6	Enterobacteria_phage	8.1e-100	96.0
AUK21981.1\|2441907_2442477_+	hypothetical protein	A0A2R2Z339	Escherichia_phage	1.5e-104	99.5
AUK21982.1\|2442633_2443101_+\|lysis	lysis protein	Q7AYI6	Enterobacteria_phage	2.8e-72	94.2
AUK21983.1\|2443183_2443324_+	hypothetical protein	NA	NA	NA	NA
AUK21984.1\|2443566_2443881_+	PerC family transcriptional regulator	NA	NA	NA	NA
AUK21985.1\|2443962_2444187_-	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	3.8e-19	90.6
AUK21986.1\|2444228_2444594_+	HNH endonuclease	A0A0P0ZCH0	Stx2-converting_phage	2.0e-65	100.0
AUK21987.1\|2444884_2445448_+\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	1.1e-89	100.0
AUK21988.1\|2445444_2447106_+\|terminase	terminase	A0A0P0ZD10	Stx2-converting_phage	0.0e+00	99.3
AUK21989.1\|2447169_2449107_+\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	99.7
AUK24471.1\|2449151_2449373_+	hypothetical protein	H6WZL1	Escherichia_phage	9.9e-36	98.6
AUK21990.1\|2451897_2452224_+\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	2.7e-53	98.1
2450246:2450262	attR	NA	NA	NA	NA
AUK21991.1\|2452233_2452584_+\|head,tail	head-tail adaptor protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
AUK21992.1\|2452580_2453027_+	hypothetical protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
AUK21993.1\|2453023_2453368_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
AUK21994.1\|2453426_2454143_+\|tail	phage tail protein	A0A0P0ZD29	Stx2-converting_phage	2.3e-126	97.9
AUK21995.1\|2454148_2454523_+\|tail	phage tail protein	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
AUK21996.1\|2454546_2454828_+\|tail	phage tail protein	A0A0P0ZDE6	Stx2-converting_phage	1.3e-45	100.0
AUK21997.1\|2454879_2458122_+\|tail	phage tail tape measure protein	H6WZM1	Escherichia_phage	0.0e+00	97.7
AUK21998.1\|2458114_2458456_+\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	2.5e-62	99.1
AUK21999.1\|2458455_2459154_+\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	8.1e-132	98.3
AUK22000.1\|2459164_2459908_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	1.7e-148	98.0
AUK22001.1\|2459805_2460486_+\|tail	phage tail protein	Q9EYE5	Enterobacteria_phage	1.6e-113	93.3
AUK22002.1\|2460724_2464201_+\|tail	phage tail protein	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	92.8
AUK22003.1\|2464267_2464867_+	Ail/Lom family protein	A0A0P0ZE39	Stx2-converting_phage	7.5e-110	99.0
AUK22004.1\|2464931_2466245_+\|tail	phage tail protein	A0A0P0ZD68	Stx2-converting_phage	2.8e-77	98.9
AUK22005.1\|2466246_2466516_+\|tail	phage tail protein	A0A2R2Z347	Escherichia_phage	3.8e-45	100.0
AUK22006.1\|2466656_2467532_+	secretion protein EspS	A0A0P0ZCT1	Stx2-converting_phage	1.4e-160	98.6
AUK24472.1\|2467756_2468128_-	DUF1076 domain-containing protein	A0A0P0ZBX1	Stx2-converting_phage	8.2e-67	98.4
AUK24473.1\|2469001_2469316_-	DinI family protein	Q687E4	Enterobacteria_phage	7.0e-27	81.9
AUK22007.1\|2469375_2470659_+	MFS transporter	NA	NA	NA	NA
AUK22008.1\|2470747_2472208_+	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	1.5e-42	29.2
AUK22009.1\|2472243_2472447_-	selenoprotein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2
AUK22010.1\|2472623_2473310_-	transcriptional regulator	NA	NA	NA	NA
AUK22011.1\|2473398_2474145_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AUK22012.1\|2474281_2476327_+	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
AUK22013.1\|2476370_2476889_-	hypothetical protein	NA	NA	NA	NA
AUK22014.1\|2477164_2477557_+	TIGR00156 family protein	NA	NA	NA	NA
AUK22015.1\|2479698_2479794_-	hypothetical protein	NA	NA	NA	NA
AUK22016.1\|2479920_2481108_-	MFS transporter	NA	NA	NA	NA
AUK22017.1\|2481302_2482202_+	O-acetylserine/cysteine exporter	NA	NA	NA	NA
AUK22018.1\|2482232_2482451_-	multiple antibiotic resistance protein MarB	NA	NA	NA	NA
AUK22019.1\|2482482_2482866_-	MDR efflux pump AcrAB transcriptional activator MarA	D0R0F8	Streptococcus_phage	4.7e-09	32.3
AUK22020.1\|2482885_2483320_-	MarR family transcriptional regulator	NA	NA	NA	NA
AUK22021.1\|2483531_2484197_+	stress protection protein MarC	NA	NA	NA	NA
AUK22022.1\|2484221_2485412_-	sugar efflux transporter	NA	NA	NA	NA
AUK22023.1\|2485561_2486677_-	hypothetical protein	NA	NA	NA	NA
AUK22024.1\|2486754_2487636_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUK22025.1\|2488637_2489342_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6

DBSCAN-SWA_9

2855527 : 2914261

Escherichia_phage(25.49%)

capsid,head,lysis,tRNA,tail,holin,terminase,integrase

attL 2863818:2863832|attR 2914363:2914377

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK22343.1\|2855527_2856634_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AUK24497.1\|2856669_2857311_+	lysogenization protein HflD	NA	NA	NA	NA
AUK22344.1\|2857314_2858685_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.2e-107	44.9
AUK22345.1\|2858852_2859524_+	two-component system response regulator PhoP	NA	NA	NA	NA
AUK22346.1\|2859523_2860984_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
AUK22347.1\|2861059_2862181_+	50S ribosomal protein L16 arginine hydroxylase	NA	NA	NA	NA
AUK22348.1\|2862326_2863556_-	peptidase T	NA	NA	NA	NA
AUK22349.1\|2863611_2863827_+	hypothetical protein	NA	NA	NA	NA
AUK22350.1\|2863805_2864942_+	Fe3+/spermidine/putrescine ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	9.4e-29	39.8
2863818:2863832	attL	NA	NA	NA	NA
AUK22351.1\|2864925_2865789_+	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
AUK24498.1\|2865953_2866283_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
AUK22352.1\|2866428_2867037_-	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	2.9e-37	43.6
AUK24499.1\|2867044_2868328_-\|tail	phage tail protein	Q9LA62	Enterobacterial_phage	6.4e-34	67.9
AUK22353.1\|2868392_2868992_-	Ail/Lom family protein	A5LH44	Enterobacteria_phage	1.4e-95	85.9
AUK22354.1\|2869059_2872446_-\|tail	phage tail protein	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	86.2
AUK22355.1\|2872686_2873367_-\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	6.3e-113	92.9
AUK22356.1\|2873264_2874008_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	4.5e-149	98.4
AUK22357.1\|2874018_2874717_-\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	1.4e-131	98.3
AUK22358.1\|2874716_2875058_-\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	6.9e-52	82.3
AUK22359.1\|2875050_2878293_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	88.1
AUK22360.1\|2878340_2878622_-	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	7.9e-46	100.0
AUK22361.1\|2878645_2879020_-\|tail	phage tail protein	A0A0P0ZE84	Stx2-converting_phage	4.6e-65	100.0
AUK22362.1\|2879034_2879751_-\|tail	phage tail protein	A0A0P0ZDV1	Stx2-converting_phage	1.6e-127	100.0
AUK22363.1\|2879811_2880156_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	3.4e-51	89.5
AUK22364.1\|2880152_2880599_-	hypothetical protein	A0A0N7KZI9	Stx2-converting_phage	4.4e-75	99.3
AUK22365.1\|2880595_2880946_-\|head,tail	head-tail adaptor protein	A0A0P0ZB28	Stx2-converting_phage	5.0e-58	98.3
AUK22366.1\|2880955_2881282_-\|head,tail	phage gp6-like head-tail connector protein	B6ETF0	Enterobacteria_phage	2.7e-53	99.1
AUK22367.1\|2883646_2883868_-	hypothetical protein	H6WZL1	Escherichia_phage	2.1e-33	93.2
AUK22368.1\|2883912_2885850_-\|capsid	phage major capsid protein	Q6H9U8	Enterobacteria_phage	0.0e+00	99.2
AUK22369.1\|2885913_2887575_-\|terminase	terminase	A0A0P0ZEI4	Stx2-converting_phage	0.0e+00	98.9
AUK22370.1\|2887571_2888135_-\|terminase	terminase	B6DZ97	Enterobacteria_phage	1.2e-80	93.0
AUK22371.1\|2888424_2888790_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	8.7e-61	94.2
AUK22372.1\|2888831_2889032_+	DUF3950 domain-containing protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
AUK22373.1\|2889163_2889490_-	hypothetical protein	H6WZK5	Escherichia_phage	1.5e-56	99.1
AUK22374.1\|2889425_2889608_-	hypothetical protein	H6WZK4	Escherichia_phage	4.5e-26	100.0
AUK22375.1\|2889833_2890058_-	hypothetical protein	NA	NA	NA	NA
AUK24500.1\|2890081_2890549_-\|lysis	lysis protein	Q6H9V3	Enterobacteria_phage	3.4e-70	89.0
AUK22376.1\|2890777_2891473_-	phage antirepressor protein	Q5MBW0	Stx1-converting_phage	1.4e-123	98.7
AUK22377.1\|2891746_2892280_-	lysozyme	A0A1I9LJR4	Stx_converting_phage	9.0e-99	94.9
AUK22378.1\|2892330_2892675_-	DUF1327 domain-containing protein	A0A0P0ZD64	Stx2-converting_phage	2.3e-55	94.7
AUK22379.1\|2892678_2892894_-\|holin	holin	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
AUK22380.1\|2892969_2893239_-	DUF826 domain-containing protein	A0A2R2Z348	Escherichia_phage	8.5e-05	70.8
AUK22381.1\|2893276_2893459_-	DUF1378 domain-containing protein	A0A2R2Z345	Escherichia_phage	1.7e-20	84.7
AUK22382.1\|2893593_2895546_-	sialate O-acetylesterase	A0A0P0ZBH7	Stx2-converting_phage	5.5e-263	69.8
AUK22383.1\|2896341_2897400_-	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	6.9e-183	88.2
AUK24501.1\|2897550_2897871_-	hypothetical protein	S5MQK8	Escherichia_phage	1.6e-34	98.6
AUK22384.1\|2897990_2898521_-	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	1.0e-70	71.4
AUK22385.1\|2898529_2898889_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.6e-35	60.9
AUK22386.1\|2898901_2899951_-	hypothetical protein	U5P0K4	Shigella_phage	1.4e-108	54.3
AUK22387.1\|2899952_2900231_-	hypothetical protein	I6PCV7	Cronobacter_phage	4.8e-11	49.2
AUK22388.1\|2900333_2901437_-	DNA-binding protein	NA	NA	NA	NA
AUK22389.1\|2901417_2902068_-	hypothetical protein	NA	NA	NA	NA
AUK22390.1\|2902233_2902446_-	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	3.6e-27	95.7
AUK22391.1\|2903093_2903867_+	iroE	NA	NA	NA	NA
AUK22392.1\|2904232_2904649_-	DUF977 domain-containing protein	A0A0U2QQN3	Escherichia_phage	2.1e-58	86.1
AUK22393.1\|2904664_2905378_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	4.9e-76	61.7
AUK22394.1\|2905400_2906153_-	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	2.6e-107	79.8
AUK22395.1\|2906159_2907113_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.1e-73	52.6
AUK22396.1\|2907134_2907560_-	Rha family transcriptional regulator	NA	NA	NA	NA
AUK22397.1\|2907556_2907787_-	hypothetical protein	H9C161	Pectobacterium_phage	2.9e-06	53.8
AUK24502.1\|2907992_2908517_+	LexA family transcriptional repressor	H9C160	Pectobacterium_phage	6.3e-12	28.0
AUK24503.1\|2908800_2908956_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.8e-07	51.1
AUK22398.1\|2908915_2909086_+	hypothetical protein	NA	NA	NA	NA
AUK22399.1\|2909115_2909334_+	hypothetical protein	NA	NA	NA	NA
AUK22400.1\|2909901_2910090_+	division inhibition protein DicB	NA	NA	NA	NA
AUK22401.1\|2910086_2910278_+	DUF1482 domain-containing protein	NA	NA	NA	NA
AUK22402.1\|2910371_2912843_+	exonuclease	K7PLW7	Enterobacteria_phage	8.5e-59	60.3
AUK22403.1\|2912904_2913174_+	excisionase	NA	NA	NA	NA
AUK22404.1\|2913142_2914261_+\|integrase	integrase	Q77Z04	Phage_21	7.7e-84	44.2
2914363:2914377	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3191705 : 3287975

Escherichia_phage(38.98%)

protease,capsid,lysis,head,portal,tRNA,tail,holin,terminase,plate,integrase

attL 3236302:3236319|attR 3279310:3279327

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK22670.1\|3191705_3193106_+\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	5.3e-82	36.1
AUK22671.1\|3193708_3194797_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.8e-98	54.3
AUK22672.1\|3194812_3194995_-	hypothetical protein	NA	NA	NA	NA
AUK22673.1\|3194981_3196172_+	aromatic amino acid transaminase	NA	NA	NA	NA
AUK22674.1\|3196393_3197041_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AUK24524.1\|3197067_3197616_-	DUF882 domain-containing protein	A0A0K1LKR7	Rhodobacter_phage	7.0e-06	33.7
AUK22675.1\|3197796_3199644_-	transpeptidase	NA	NA	NA	NA
AUK22676.1\|3199904_3204365_-	chromosome partition protein MukB	NA	NA	NA	NA
AUK22677.1\|3204364_3205069_-	condensin subunit E	NA	NA	NA	NA
AUK22678.1\|3205049_3206372_-	chromosome partition protein MukF	NA	NA	NA	NA
AUK22679.1\|3206368_3207154_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
AUK22680.1\|3207222_3207387_+	hypothetical protein	NA	NA	NA	NA
AUK22681.1\|3207289_3208069_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
AUK22682.1\|3208045_3208939_-	hypothetical protein	NA	NA	NA	NA
AUK22683.1\|3209092_3209839_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
AUK22684.1\|3209835_3210018_-	protein YcaR	NA	NA	NA	NA
AUK22685.1\|3210069_3211302_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
AUK22686.1\|3211338_3212325_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
AUK22687.1\|3212321_3214070_-	lipid A export ATP-binding/permease MsbA	W8CYL7	Bacillus_phage	2.5e-57	29.8
AUK22688.1\|3214106_3216287_-	ComEC family protein	NA	NA	NA	NA
AUK22689.1\|3217355_3217640_-	integration host factor subunit beta	A7KV42	Bacillus_phage	3.2e-10	40.2
AUK22690.1\|3217799_3219473_-	30S ribosomal protein S1	NA	NA	NA	NA
AUK22691.1\|3219583_3220267_-	cytidylate kinase	NA	NA	NA	NA
AUK22692.1\|3220439_3221204_-\|protease	metalloprotease	NA	NA	NA	NA
AUK22693.1\|3221372_3222656_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
AUK22694.1\|3222726_3223815_-	3-phosphoserine/phosphohydroxythreonine aminotransferase	M1Q1P2	Streptococcus_phage	3.5e-81	46.8
AUK22695.1\|3224013_3224706_-	DUF421 domain-containing protein	NA	NA	NA	NA
AUK22696.1\|3224835_3226596_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
AUK22697.1\|3227001_3227859_+	formate transporter FocA	NA	NA	NA	NA
AUK22698.1\|3227913_3230196_+	formate acetyltransferase 1	A0A2P0VNR5	Tetraselmis_virus	1.0e-162	41.5
AUK22699.1\|3230514_3230769_-	transcriptional regulator	A0A0F7LDQ9	Escherichia_phage	6.1e-45	100.0
AUK22700.1\|3230814_3231978_-	hypothetical protein	U5N3V4	Enterobacteria_phage	5.4e-205	99.2
AUK22701.1\|3231977_3232457_-\|tail	phage tail protein	O64315	Escherichia_phage	1.5e-84	99.4
AUK22702.1\|3232471_3234919_-\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	98.7
AUK22703.1\|3234911_3235067_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	7.5e-22	98.0
AUK22704.1\|3235063_3235339_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
AUK22705.1\|3235395_3235914_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
AUK22706.1\|3235926_3237117_-\|tail	phage tail protein	A0A0F7LBW9	Escherichia_phage	2.4e-224	99.2
3236302:3236319	attL	NA	NA	NA	NA
AUK22707.1\|3237240_3237678_-\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	1.9e-22	42.8
AUK22708.1\|3237677_3239408_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	3.1e-84	64.3
AUK22709.1\|3239404_3240016_-\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	1.7e-117	100.0
AUK22710.1\|3240008_3240917_-\|plate	baseplate assembly protein	A0A0F7LCJ3	Escherichia_phage	1.2e-162	100.0
AUK22711.1\|3240921_3241269_-\|plate	baseplate assembly protein	A0A0F7LDQ1	Escherichia_phage	1.1e-57	99.1
AUK22712.1\|3241265_3241901_-\|plate	baseplate assembly protein	U5N3F0	Enterobacteria_phage	1.7e-112	99.1
AUK22713.1\|3241967_3242420_-	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	8.2e-77	100.0
AUK22714.1\|3242412_3242880_-\|tail	phage tail protein	Q7Y4E0	Escherichia_virus	4.3e-81	98.7
AUK22715.1\|3242842_3243016_-\|lysis	phage lysis protein	Q7Y4E1	Escherichia_virus	2.3e-24	96.5
AUK22716.1\|3242987_3243413_-	protein lysB	Q7Y4E2	Escherichia_virus	1.6e-66	96.5
AUK22717.1\|3243761_3244259_-	lysozyme	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
AUK22718.1\|3244258_3244540_-\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
AUK22719.1\|3244543_3244747_-\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
AUK22720.1\|3244746_3245256_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
AUK22721.1\|3245355_3246099_-\|terminase	terminase	Q94MK1	Enterobacteria_phage	1.4e-121	99.2
AUK22722.1\|3246102_3247176_-\|capsid	phage major capsid protein, P2 family	Q94MK2	Enterobacteria_phage	2.4e-199	99.2
AUK22723.1\|3247234_3248089_-\|capsid	capsid scaffolding protein	A0A0F7LA11	Escherichia_phage	4.6e-137	98.6
AUK22724.1\|3248262_3250035_+	oxidoreductase	A0A0F7LCK3	Escherichia_phage	0.0e+00	100.0
AUK22725.1\|3250034_3251069_+\|portal	phage portal protein	M1SV64	Escherichia_phage	3.2e-201	99.1
AUK22726.1\|3251494_3252436_+	hypothetical protein	Q2P9W7	Enterobacteria_phage	2.7e-146	81.2
AUK22727.1\|3252508_3252661_-	meiotically up-regulated 80 protein	Q2P9X3	Enterobacteria_phage	4.4e-19	91.8
AUK22728.1\|3252755_3253436_-	hypothetical protein	Q2P9W8	Enterobacteria_phage	4.6e-124	99.1
AUK22729.1\|3253463_3253685_-	DUF2158 domain-containing protein	Q2P9W9	Enterobacteria_phage	4.5e-36	100.0
AUK22730.1\|3253781_3256061_-	replication protein A	A0A0F7LBQ2	Escherichia_phage	0.0e+00	98.4
AUK22731.1\|3256050_3256326_-	hypothetical protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
AUK22732.1\|3256322_3256547_-	hypothetical protein	S4TRY6	Salmonella_phage	2.9e-35	100.0
AUK22733.1\|3256546_3256849_-	hypothetical protein	M1RZ07	Escherichia_phage	1.6e-44	97.0
AUK22734.1\|3256848_3257073_-	DUF2732 domain-containing protein	S4TP68	Salmonella_phage	4.7e-33	100.0
AUK22735.1\|3257136_3257637_-	replication protein B	S4TTB7	Salmonella_phage	1.7e-91	99.4
AUK22736.1\|3257633_3257831_-	hypothetical protein	A0A0F7LDS9	Escherichia_phage	6.1e-29	98.5
AUK22737.1\|3257814_3258186_-	hypothetical protein	Q1JS28	Enterobacteria_phage	1.6e-65	100.0
AUK22738.1\|3258279_3258579_+	XRE family transcriptional regulator	Q1JS29	Enterobacteria_phage	3.0e-51	100.0
AUK22739.1\|3258672_3259668_+\|integrase	integrase	A0A0F7LBR0	Escherichia_phage	5.4e-190	100.0
AUK22740.1\|3259699_3260497_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	1.3e-21	26.6
AUK24525.1\|3260578_3261118_-	hypothetical protein	NA	NA	NA	NA
AUK22741.1\|3261267_3262176_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUK22742.1\|3262176_3263607_-	inner membrane transporter YcaM	NA	NA	NA	NA
AUK22743.1\|3263816_3264965_-	MFS transporter	NA	NA	NA	NA
AUK22744.1\|3265278_3265905_+	hydrolase	NA	NA	NA	NA
AUK22745.1\|3265939_3266803_-	dimethyl sulfoxide reductase subunit C	NA	NA	NA	NA
AUK22746.1\|3266804_3267422_-	dimethylsulfoxide reductase, chain B	A0A077SL61	Escherichia_phage	3.8e-77	60.6
AUK22747.1\|3267432_3269877_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	6.6e-221	49.8
AUK22748.1\|3270115_3271408_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
AUK22749.1\|3271498_3272842_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.1e-80	40.8
AUK22750.1\|3272852_3273464_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
AUK22751.1\|3273618_3277608_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
AUK22752.1\|3277742_3278237_-	leucine-responsive regulatory protein	NA	NA	NA	NA
AUK22753.1\|3278781_3279747_+	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	8.5e-63	44.6
3279310:3279327	attR	NA	NA	NA	NA
AUK22754.1\|3279869_3281636_+	thiol reductant ABC exporter subunit CydD	W8CYL7	Bacillus_phage	7.0e-23	24.3
AUK22755.1\|3281636_3283358_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	3.8e-21	25.4
AUK22756.1\|3283399_3284104_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AUK22757.1\|3284388_3284607_+	translation initiation factor IF-1	NA	NA	NA	NA
AUK22758.1\|3285347_3287624_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.5e-166	42.2
AUK22759.1\|3287654_3287975_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4

DBSCAN-SWA_11

3371818 : 3450161

Enterobacteria_phage(32.2%)

transposase,capsid,head,lysis,tail,holin,terminase,portal,integrase

attL 3379952:3379986|attR 3451595:3451629

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK22835.1\|3371818_3372931_+\|transposase	IS4 family transposase	NA	NA	NA	NA
AUK22836.1\|3373132_3373810_+	PKHD-type hydroxylase	Q5GQB0	Synechococcus_phage	1.2e-18	30.1
AUK22837.1\|3373883_3374150_+	DksA/TraR family C4-type zinc finger protein	E5G6L7	Salmonella_phage	6.9e-07	45.6
AUK22838.1\|3374414_3374675_+	hypothetical protein	NA	NA	NA	NA
AUK22839.1\|3374902_3375988_-	malate/lactate/ureidoglycolate dehydrogenase	NA	NA	NA	NA
AUK22840.1\|3376128_3377091_-	DNA-binding protein YbiB	NA	NA	NA	NA
AUK22841.1\|3377118_3379269_-	ATP-dependent helicase DinG	A0A127AW80	Bacillus_phage	3.7e-42	26.1
AUK22842.1\|3379388_3379871_+	Swarming motility protein YbiA	A0A0H3TLU0	Faustovirus	2.6e-36	52.7
3379952:3379986	attL	NA	NA	NA	NA
AUK22843.1\|3380102_3381467_-	ATP-dependent RNA helicase RhlE	A0A1V0SBR7	Catovirus	1.5e-52	31.8
AUK24528.1\|3381695_3382367_+	transcriptional regulator	NA	NA	NA	NA
AUK22844.1\|3382366_3383365_+	transporter	NA	NA	NA	NA
AUK22845.1\|3383357_3385094_+	multidrug ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.3e-18	29.8
AUK22846.1\|3385086_3386220_+	inner membrane transport permease YbhS	NA	NA	NA	NA
AUK22847.1\|3386230_3387337_+	ABC transporter permease	NA	NA	NA	NA
AUK22848.1\|3387298_3387709_-	hypothetical protein	NA	NA	NA	NA
AUK22849.1\|3387841_3388603_+	EEP domain-containing protein	NA	NA	NA	NA
AUK22850.1\|3388599_3389841_+	cardiolipin synthase ClsB	NA	NA	NA	NA
AUK22851.1\|3389840_3390797_+	hypothetical protein	NA	NA	NA	NA
AUK22852.1\|3390832_3391546_-	BAX inhibitor (BI)-1/YccA family protein	NA	NA	NA	NA
AUK22853.1\|3391750_3392455_-	hypothetical protein	NA	NA	NA	NA
AUK22854.1\|3392590_3393043_-	molybdopterin synthase catalytic subunit	NA	NA	NA	NA
AUK22855.1\|3393044_3393290_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
AUK22856.1\|3393282_3393768_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
AUK22857.1\|3393770_3394283_-	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
AUK22858.1\|3394304_3395294_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
AUK22859.1\|3395690_3396599_+	hypothetical protein	A1IMD5	Streptococcus_phage	1.4e-27	31.1
AUK22860.1\|3396790_3398812_-	excinuclease ABC subunit B	NA	NA	NA	NA
AUK22861.1\|3399390_3400068_-	dethiobiotin synthase	NA	NA	NA	NA
AUK22862.1\|3400060_3400816_-	malonyl-[acyl-carrier protein] O-methyltransferase BioC	NA	NA	NA	NA
AUK22863.1\|3400802_3401957_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
AUK22864.1\|3401953_3402994_-	biotin synthase	NA	NA	NA	NA
AUK22865.1\|3403080_3404370_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	7.7e-19	29.0
AUK22866.1\|3404428_3404905_+	kinase inhibitor	NA	NA	NA	NA
AUK22867.1\|3404819_3404999_+	hypothetical protein	NA	NA	NA	NA
AUK22868.1\|3405408_3406062_+	secretion protein EspJ	NA	NA	NA	NA
AUK22869.1\|3406074_3406296_-	hypothetical protein	NA	NA	NA	NA
AUK22870.1\|3406379_3406760_-	hypothetical protein	NA	NA	NA	NA
AUK22871.1\|3406960_3407536_-	T3SS effector NleG	H6WZN1	Escherichia_phage	2.3e-76	77.0
AUK22872.1\|3407628_3408841_+\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	2.9e-169	100.0
AUK22873.1\|3409292_3409664_+\|integrase	integrase	K7PH54	Enterobacteria_phage	1.1e-58	95.1
AUK22874.1\|3409767_3410616_-	cell division protein	A5LH49	Enterobacteria_phage	3.5e-153	98.5
AUK22875.1\|3410679_3410865_+	hypothetical protein	NA	NA	NA	NA
AUK22876.1\|3410839_3411721_-	T3SS effector protein NleH	A5LH48	Enterobacteria_phage	3.9e-147	90.4
AUK22877.1\|3411826_3412096_-\|tail	phage tail protein	Q687E5	Enterobacteria_phage	4.6e-43	96.6
AUK22878.1\|3412097_3413411_-\|tail	phage tail protein	A0A0P0ZD68	Stx2-converting_phage	9.7e-78	98.6
AUK22879.1\|3413475_3414075_-	Ail/Lom family protein	A0A0P0ZCF6	Stx2-converting_phage	8.2e-109	98.0
AUK22880.1\|3417768_3418449_-\|tail	phage tail protein	Q9EYE5	Enterobacteria_phage	3.1e-112	92.0
AUK22881.1\|3418346_3419090_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.0e-148	98.4
AUK22882.1\|3419095_3419794_-\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	2.1e-132	99.1
AUK22883.1\|3419793_3420123_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	2.2e-55	95.4
AUK22884.1\|3420119_3422699_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	82.7
AUK22885.1\|3422679_3423093_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	7.8e-42	81.2
AUK22886.1\|3423119_3423551_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	3.7e-42	68.8
AUK22887.1\|3423564_3424317_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	2.7e-133	97.6
AUK22888.1\|3424324_3424720_-\|tail	phage tail protein	A0A2R9YJI2	Escherichia_phage	3.9e-59	83.2
AUK22889.1\|3424716_3425250_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.2e-57	65.1
AUK24529.1\|3425265_3425619_-\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	1.5e-41	70.1
AUK22890.1\|3425611_3426034_-	hypothetical protein	NA	NA	NA	NA
AUK22891.1\|3426037_3427066_-\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	3.9e-114	60.7
AUK22892.1\|3427123_3427471_-\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.6e-22	58.1
AUK22893.1\|3427507_3429013_-	scaffolding protein	A0A2I6TC87	Escherichia_phage	1.6e-100	54.2
AUK22894.1\|3429002_3430595_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	7.1e-184	60.9
AUK22895.1\|3430591_3430798_-\|tail	phage tail protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
AUK22896.1\|3430781_3432710_-\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	2.3e-261	66.0
AUK22897.1\|3432681_3433191_-\|terminase	terminase	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
AUK22898.1\|3433585_3433780_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
AUK22899.1\|3433859_3434000_+	hypothetical protein	NA	NA	NA	NA
AUK22900.1\|3433967_3434585_-	hypothetical protein	A0A1R3Y613	Salmonella_virus	6.5e-93	85.9
AUK22901.1\|3434734_3435172_-\|lysis	lysis protein	A0A0P0ZBQ9	Stx2-converting_phage	2.0e-72	100.0
AUK22902.1\|3435168_3435666_-	lysozyme	A0A0N7KZA0	Stx2-converting_phage	2.6e-92	100.0
AUK22903.1\|3435665_3435881_-\|holin	holin	A0A0P0ZC45	Stx2-converting_phage	7.7e-33	98.6
AUK22904.1\|3435879_3436041_+	hypothetical protein	NA	NA	NA	NA
AUK22905.1\|3436319_3438170_-	9-O-acetyl-N-acetylneuraminic acid deacetylase	H6WZJ9	Escherichia_phage	0.0e+00	96.4
AUK22906.1\|3438712_3439429_-	hypothetical protein	NA	NA	NA	NA
AUK22907.1\|3439640_3440330_-	antitermination protein	I6PDF8	Cronobacter_phage	1.5e-58	48.1
AUK22908.1\|3440344_3440467_-	hypothetical protein	NA	NA	NA	NA
AUK22909.1\|3440805_3441768_+	DUF2219 domain-containing protein	NA	NA	NA	NA
AUK22910.1\|3441975_3442641_-	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	4.7e-129	98.6
AUK22911.1\|3442637_3443258_-	recombination protein NinG	Q716C3	Shigella_phage	7.0e-95	94.2
AUK22912.1\|3443250_3443421_-	protein ninF	Q716C4	Shigella_phage	4.6e-25	98.2
AUK24530.1\|3443417_3443600_-	NinE family protein	Q8H9Z6	Enterobacteria_phage	4.8e-28	96.7
AUK22913.1\|3443596_3443986_-	recombination protein NinB	M1FPM8	Enterobacteria_phage	2.9e-70	99.2
AUK22914.1\|3444028_3445242_-\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	2.9e-169	100.0
AUK22915.1\|3445279_3445468_+	gam	A0A1I9LJN1	Stx_converting_phage	7.9e-26	100.0
AUK22916.1\|3445473_3446259_+	phage recombination protein Bet	A0A0N7KZJ3	Stx2-converting_phage	1.1e-148	100.0
AUK22917.1\|3446255_3446936_+	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	3.5e-132	99.6
AUK24531.1\|3446932_3447115_+	DUF1317 domain-containing protein	A0A0P0ZAS9	Stx2-converting_phage	4.1e-27	95.0
AUK22918.1\|3447087_3447279_+	hypothetical protein	A0A0P0ZC67	Stx2-converting_phage	1.1e-25	96.8
AUK22919.1\|3447289_3447571_+	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	3.6e-46	97.8
AUK22920.1\|3447669_3447891_+	conjugal transfer protein TraR	A0A0N7C211	Escherichia_phage	3.5e-33	93.2
AUK22921.1\|3447890_3448175_+	ASCH domain-containing protein	A0A1I9LJL9	Stx_converting_phage	2.6e-44	91.5
AUK22922.1\|3448247_3448415_+	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	7.0e-26	98.2
AUK22923.1\|3448443_3448788_+	hypothetical protein	K7PJY7	Enterobacterial_phage	4.5e-59	98.2
AUK22924.1\|3448894_3449113_+	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
AUK22925.1\|3449090_3450161_+\|integrase	integrase	K7P6P6	Enterobacteria_phage	2.5e-201	99.7
3451595:3451629	attR	NA	NA	NA	NA

DBSCAN-SWA_12

3671050 : 3749219

Enterobacteria_phage(62.86%)

transposase,capsid,protease,head,tail,tRNA,holin,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK23118.1\|3671050_3672187_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
AUK23119.1\|3672457_3674695_+	bacteriophage N4 adsorption protein B	NA	NA	NA	NA
AUK23120.1\|3674681_3677654_+	phage receptor	NA	NA	NA	NA
AUK23121.1\|3677654_3678545_+	hypothetical protein	NA	NA	NA	NA
AUK23122.1\|3678458_3678671_-	hypothetical protein	NA	NA	NA	NA
AUK23123.1\|3678727_3679489_+	AraC family transcriptional regulator	NA	NA	NA	NA
AUK23124.1\|3679482_3679599_+	hypothetical protein	NA	NA	NA	NA
AUK23125.1\|3679784_3679976_-	hypothetical protein	NA	NA	NA	NA
AUK23126.1\|3680001_3680955_+\|protease	outer membrane protease PgtE	NA	NA	NA	NA
AUK23127.1\|3681141_3682626_+	alpha/beta hydrolase	NA	NA	NA	NA
AUK23128.1\|3682809_3683115_-\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	1.8e-11	74.5
AUK24540.1\|3683213_3683840_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
AUK23129.1\|3683784_3683922_-\|capsid	nucleocapsid protein	NA	NA	NA	NA
AUK23130.1\|3683894_3684479_-\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	2.8e-101	93.3
AUK23131.1\|3684478_3687829_-	short-chain fatty acid transporter	X2KTY7	Enterobacteria_phage	1.8e-11	35.5
AUK23132.1\|3687893_3688493_-	Ail/Lom family protein	Q6H9T1	Enterobacteria_phage	2.8e-109	98.5
AUK23133.1\|3688559_3691958_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	90.2
AUK23134.1\|3692018_3692690_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	9.9e-103	90.1
AUK23135.1\|3692587_3693331_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
AUK23136.1\|3693336_3694035_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
AUK23137.1\|3694034_3694364_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
AUK23138.1\|3694360_3696940_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	87.4
AUK23139.1\|3696932_3697367_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	4.5e-64	99.2
AUK23140.1\|3697348_3697771_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.1e-70	96.4
AUK23141.1\|3699310_3699706_-\|tail	phage tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
AUK23142.1\|3699702_3700281_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.5e-78	97.4
AUK23143.1\|3700292_3700646_-\|tail	phage tail protein	A0A2R9YJJ5	Escherichia_phage	7.6e-62	97.4
AUK23144.1\|3700657_3701056_-	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	1.2e-50	83.3
AUK23145.1\|3701097_3702123_-\|capsid	major capsid protein E	C6ZCY2	Enterobacteria_phage	9.6e-190	98.8
AUK23146.1\|3702178_3702511_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.9e-54	99.1
AUK23147.1\|3702520_3703840_-\|capsid	capsid assembly protein	A0A0K2FI53	Enterobacteria_phage	1.3e-234	98.9
AUK23148.1\|3703820_3705422_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.2e-308	98.7
AUK23149.1\|3705418_3705625_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
AUK23150.1\|3705621_3707547_-\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.4
AUK23151.1\|3707521_3708067_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
AUK23152.1\|3708336_3708657_+	hypothetical protein	NA	NA	NA	NA
AUK23153.1\|3708544_3708898_+	hypothetical protein	NA	NA	NA	NA
AUK23154.1\|3709020_3709401_-	hypothetical protein	H6WZK5	Escherichia_phage	2.6e-39	72.2
AUK23155.1\|3709827_3710121_+	lipoprotein bor	C6ZCX3	Enterobacteria_phage	1.6e-44	91.8
AUK23156.1\|3710211_3710394_-	hypothetical protein	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
AUK23157.1\|3710610_3711144_-	lysozyme	K7PLY1	Enterobacteria_phage	1.1e-99	95.5
AUK23158.1\|3711249_3711522_+	hypothetical protein	NA	NA	NA	NA
AUK23159.1\|3711487_3711832_-	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	3.5e-35	90.5
AUK24541.1\|3711836_3712052_-\|holin	holin	M1FN85	Enterobacteria_phage	1.0e-32	95.8
AUK23160.1\|3712593_3712788_+	hypothetical protein	NA	NA	NA	NA
AUK23161.1\|3714046_3715259_+\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	2.9e-169	100.0
AUK23162.1\|3715225_3715384_+	PapI protein	A0A0N7BTS3	Escherichia_phage	1.2e-06	100.0
AUK23163.1\|3715909_3716542_+	DNA-binding response regulator	NA	NA	NA	NA
AUK23164.1\|3716544_3717060_-	fimbriae assembly protein	NA	NA	NA	NA
AUK23165.1\|3718907_3719600_-	fimbrial chaperone SfmC	NA	NA	NA	NA
AUK23166.1\|3719819_3720362_-	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
AUK23167.1\|3720832_3721699_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
AUK23168.1\|3721700_3721913_+	ribosome-associated protein	NA	NA	NA	NA
AUK23169.1\|3722020_3722542_+	metal-dependent hydrolase	NA	NA	NA	NA
AUK23170.1\|3722577_3723963_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
AUK23171.1\|3724136_3724631_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
AUK23172.1\|3724633_3725356_+	UDP-2,3-diacylglucosamine hydrolase	NA	NA	NA	NA
AUK23173.1\|3725473_3725983_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
AUK23174.1\|3725979_3727047_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AUK23175.1\|3727241_3728135_-	carbamate kinase	NA	NA	NA	NA
AUK23176.1\|3728131_3728947_-	DUF2877 domain-containing protein	NA	NA	NA	NA
AUK23177.1\|3728957_3730217_-	DUF1116 domain-containing protein	NA	NA	NA	NA
AUK23178.1\|3730226_3731894_-	acyl-CoA synthetase FdrA	NA	NA	NA	NA
AUK23179.1\|3732210_3733260_+	ureidoglycolate dehydrogenase	NA	NA	NA	NA
AUK23180.1\|3733281_3734517_+	allantoate amidohydrolase	NA	NA	NA	NA
AUK23181.1\|3736317_3737463_-	glycerate kinase	W6LM47	Streptococcus_phage	9.1e-48	41.6
AUK23182.1\|3737484_3738786_-	uracil/xanthine transporter	NA	NA	NA	NA
AUK23183.1\|3738842_3740204_-	cyclic amidohydrolase	NA	NA	NA	NA
AUK23184.1\|3740263_3741718_-	allantoin permease	NA	NA	NA	NA
AUK23185.1\|3741886_3742765_-	2-hydroxy-3-oxopropionate reductase	NA	NA	NA	NA
AUK23186.1\|3742864_3743641_-	hydroxypyruvate isomerase	NA	NA	NA	NA
AUK23187.1\|3743653_3745435_-	glyoxylate carboligase	E4WLQ6	Ostreococcus_tauri_virus	3.5e-38	27.0
AUK23188.1\|3745524_3746340_-	transcriptional regulator	NA	NA	NA	NA
AUK23189.1\|3746417_3746900_-	ureidoglycolate lyase	NA	NA	NA	NA
AUK23190.1\|3747129_3748056_+	HTH-type transcriptional activator AllS	NA	NA	NA	NA
AUK23191.1\|3748124_3749219_+\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA

DBSCAN-SWA_13

3945526 : 4042344

Shigella_phage(41.67%)

transposase,capsid,protease,head,portal,lysis,tail,holin,terminase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK23373.1\|3945526_3947560_-\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	3.4e-21	27.4
AUK24548.1\|3947556_3947772_-	hypothetical protein	NA	NA	NA	NA
AUK23374.1\|3947688_3948276_+	transcriptional regulator	NA	NA	NA	NA
AUK23375.1\|3948289_3949762_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
AUK23376.1\|3949775_3951446_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	4.7e-61	31.2
AUK23377.1\|3951658_3952327_+	hypothetical protein	NA	NA	NA	NA
AUK23378.1\|3952298_3952496_+	universal stress protein	NA	NA	NA	NA
AUK23379.1\|3952402_3952615_+	hypothetical protein	NA	NA	NA	NA
AUK23380.1\|3952569_3953265_-	lactate utilization protein C	NA	NA	NA	NA
AUK23381.1\|3953257_3954685_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
AUK23382.1\|3954695_3955415_-	(Fe-S)-binding protein	NA	NA	NA	NA
AUK23383.1\|3955941_3956796_-	AraC family transcriptional regulator	NA	NA	NA	NA
AUK23384.1\|3957021_3958347_+	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	3.2e-113	47.8
AUK23385.1\|3958455_3958692_+	DUF1471 domain-containing protein	NA	NA	NA	NA
AUK23386.1\|3958703_3959297_+	hypothetical protein	NA	NA	NA	NA
AUK23387.1\|3959854_3960739_+	AraC family transcriptional regulator	NA	NA	NA	NA
AUK23388.1\|3960878_3965135_-	intimin-like adhesin FdeC	NA	NA	NA	NA
AUK23389.1\|3966249_3966351_+	hypothetical protein	NA	NA	NA	NA
AUK23390.1\|3966714_3966978_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
AUK23391.1\|3966977_3967118_+	50S ribosomal protein L36	NA	NA	NA	NA
AUK23392.1\|3967152_3967380_-	hypothetical protein	NA	NA	NA	NA
AUK23393.1\|3967441_3967621_-	hypothetical protein	NA	NA	NA	NA
AUK23394.1\|3968047_3969028_-\|transposase	IS5/IS1182 family transposase	A0A077SK28	Escherichia_phage	1.3e-183	98.8
AUK23395.1\|3969026_3969245_+	hypothetical protein	NA	NA	NA	NA
AUK23396.1\|3969354_3969945_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
AUK23397.1\|3970019_3970607_+	fimbrial protein	NA	NA	NA	NA
AUK23398.1\|3970664_3971333_+	fimbrial chaperone EcpB	NA	NA	NA	NA
AUK23399.1\|3973872_3975516_+	fimbria adhesin EcpD	NA	NA	NA	NA
AUK23400.1\|3976508_3976838_+	ferredoxin	NA	NA	NA	NA
AUK23401.1\|3977084_3977699_-	hypothetical protein	NA	NA	NA	NA
AUK23402.1\|3978115_3978805_+	aldehyde dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
AUK23403.1\|3978801_3979758_+	xanthine dehydrogenase	NA	NA	NA	NA
AUK23404.1\|3979754_3981953_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	A0A0P0I429	Acinetobacter_phage	3.3e-38	25.7
AUK23405.1\|3981962_3982919_+	hypothetical protein	NA	NA	NA	NA
AUK23406.1\|3982897_3983308_+	hypothetical protein	NA	NA	NA	NA
AUK23407.1\|3983544_3983697_-	hypothetical protein	NA	NA	NA	NA
AUK23408.1\|3984045_3984315_-	hypothetical protein	NA	NA	NA	NA
AUK23409.1\|3984942_3986832_+	DUF262 domain-containing protein	NA	NA	NA	NA
AUK23410.1\|3986865_3987057_-	DNA invertase	A0A1S6L009	Salmonella_phage	1.7e-15	70.5
AUK23411.1\|3987086_3987617_+\|tail	phage tail protein	A0A0F7LCR3	Escherichia_phage	9.9e-98	95.5
AUK23412.1\|3987616_3988219_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	3.6e-96	89.5
AUK23413.1\|3988190_3988610_-\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	4.8e-39	66.1
AUK23414.1\|3989485_3990070_-	DUF2313 domain-containing protein	O22003	Shigella_phage	1.1e-113	100.0
AUK23415.1\|3990060_3991119_-\|plate	phage baseplate protein	U5P424	Shigella_phage	6.8e-199	98.0
AUK23416.1\|3991105_3991534_-\|tail	phage tail protein	U5P0R9	Shigella_phage	2.0e-80	99.3
AUK23417.1\|3991530_3992079_-\|plate	phage baseplate assembly protein V	U5P081	Shigella_phage	3.3e-96	98.4
AUK23418.1\|3992078_3993158_-\|plate	baseplate protein	U5P0H6	Shigella_phage	4.5e-206	99.4
AUK23419.1\|3993154_3994525_-	DNA circularization protein	S5FUX4	Shigella_phage	1.1e-254	98.9
AUK23420.1\|3994543_3996379_-\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	5.0e-306	99.3
AUK23421.1\|3996371_3996554_-	hypothetical protein	NA	NA	NA	NA
AUK23422.1\|3996520_3996790_-\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	6.0e-43	98.9
AUK23423.1\|3996789_3997146_-\|tail	phage tail protein	U5P076	Shigella_phage	5.3e-63	100.0
AUK23424.1\|3997145_3998642_-\|tail	phage tail protein	M1FN90	Enterobacteria_phage	2.9e-272	98.8
AUK23425.1\|3998625_3998796_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
AUK23426.1\|3998804_3999365_-	hypothetical protein	M1FQV7	Enterobacteria_phage	1.0e-105	100.0
AUK23427.1\|3999361_3999868_-	hypothetical protein	M1FPE2	Enterobacteria_phage	6.6e-83	92.3
AUK23428.1\|3999842_4000253_-\|head,tail	head-tail adaptor protein	M1FJ87	Enterobacteria_phage	6.1e-71	94.9
AUK23429.1\|4000249_4000573_-\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	3.3e-56	98.1
AUK23430.1\|4000575_4000776_-	hypothetical protein	S5FNU1	Shigella_phage	1.7e-26	98.5
AUK23431.1\|4000825_4002031_-\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	1.8e-224	100.0
AUK23432.1\|4002045_4002732_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	1.1e-125	100.0
AUK23433.1\|4002673_4003915_-\|portal	phage portal protein	U5P411	Shigella_phage	2.0e-242	99.8
AUK23434.1\|4003914_4004097_-	hypothetical protein	S5FXQ9	Shigella_phage	8.5e-25	96.7
AUK23435.1\|4004108_4005842_-\|terminase	terminase	U5P0Q5	Shigella_phage	0.0e+00	98.6
AUK23436.1\|4005855_4006350_-\|terminase	phage terminase small subunit P27 family	Q8SBI1	Shigella_phage	1.6e-86	99.4
AUK23437.1\|4006466_4006817_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	1.2e-62	95.7
AUK23438.1\|4007109_4007250_-	Rz1 lytic protein	U5P461	Shigella_phage	3.5e-10	81.0
AUK23439.1\|4007342_4007636_+	lipoprotein bor	K7PL54	Enterobacteria_phage	2.0e-44	91.8
AUK23440.1\|4007667_4008129_-\|lysis	lysis protein	A0A0K2FJD0	Enterobacteria_phage	9.2e-76	98.7
AUK23441.1\|4008125_4008602_-	lysozyme	K7PKV2	Enterobacteria_phage	7.8e-86	96.8
AUK24549.1\|4008605_4008941_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	5.2e-60	100.0
AUK23442.1\|4009017_4010070_-	site-specific DNA-methyltransferase	K7PKK9	Enterobacteria_phage	7.0e-204	97.7
AUK23443.1\|4010219_4010414_-	TrmB family transcriptional regulator	Q8SBE3	Shigella_phage	3.7e-26	93.8
AUK23444.1\|4010991_4012074_+	porin OmpD	Q1MVN1	Enterobacteria_phage	4.4e-161	78.7
AUK23445.1\|4012262_4012646_-	antitermination protein	A0A088CD47	Shigella_phage	5.2e-56	83.3
AUK23446.1\|4012731_4012872_-	hypothetical protein	K7PHH3	Enterobacteria_phage	6.5e-09	69.8
AUK23447.1\|4012868_4013231_-	hypothetical protein	K7PM48	Enterobacteria_phage	2.3e-58	94.0
AUK23448.1\|4013227_4013518_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.5e-47	94.8
AUK24550.1\|4013510_4013606_-	hypothetical protein	NA	NA	NA	NA
AUK23449.1\|4013686_4014899_+\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	2.9e-169	100.0
AUK23450.1\|4017293_4018772_-	type VI secretion system protein TssA	NA	NA	NA	NA
AUK23451.1\|4018710_4019454_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
AUK23452.1\|4019450_4022216_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.4e-81	30.8
AUK23453.1\|4022224_4022986_-	hypothetical protein	NA	NA	NA	NA
AUK23454.1\|4022990_4024322_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AUK23455.1\|4024324_4024849_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AUK23456.1\|4024845_4026126_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AUK23457.1\|4026150_4027233_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AUK23458.1\|4027196_4029047_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AUK23459.1\|4029050_4029464_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AUK23460.1\|4029470_4030946_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AUK23461.1\|4030996_4031221_-	hypothetical protein	NA	NA	NA	NA
AUK23462.1\|4031255_4031756_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AUK23463.1\|4032450_4032969_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AUK23464.1\|4033001_4033139_+	hypothetical protein	NA	NA	NA	NA
AUK23465.1\|4033178_4035320_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	9.1e-25	24.9
AUK23466.1\|4035395_4039430_+	RHS element protein	A0A2H4JHK7	uncultured_Caudovirales_phage	6.1e-22	43.1
AUK23467.1\|4040385_4040604_+	hypothetical protein	NA	NA	NA	NA
AUK23468.1\|4041207_4042344_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

4061162 : 4078095

Enterobacteria_phage(31.82%)

transposase,integrase

attL 4062473:4062486|attR 4066697:4066710

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK23489.1\|4061162_4062218_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	5.0e-117	60.6
4062473:4062486	attL	NA	NA	NA	NA
AUK23490.1\|4062505_4063609_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
AUK23491.1\|4063620_4064874_+	gamma-glutamyl-phosphate reductase	A0A1X9I5D4	Streptococcus_phage	9.8e-96	47.2
AUK24553.1\|4065078_4066017_-\|integrase	site-specific integrase	U5P434	Shigella_phage	4.7e-183	99.7
AUK23492.1\|4066118_4066499_-	DNA-binding protein	M1FJ59	Enterobacteria_phage	2.2e-59	99.1
AUK23493.1\|4066440_4066719_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	1.4e-47	96.7
4066697:4066710	attR	NA	NA	NA	NA
AUK23494.1\|4066766_4066985_-	conjugal transfer protein TraR	M1FQT7	Enterobacteria_phage	1.8e-34	95.8
AUK23495.1\|4067083_4067365_-	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	5.5e-47	98.9
AUK24554.1\|4067927_4068086_-	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	1.5e-22	96.2
AUK23496.1\|4068082_4068763_-	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	3.5e-132	99.6
AUK23497.1\|4068759_4069545_-	phage recombination protein Bet	A0A0N7KZJ3	Stx2-converting_phage	1.1e-148	100.0
AUK23498.1\|4069550_4069847_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	5.2e-48	98.0
AUK23499.1\|4069923_4070130_-	cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
AUK23500.1\|4070725_4071481_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.4e-92	75.0
AUK23501.1\|4071519_4071750_+	transcriptional regulator	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
AUK23502.1\|4071819_4072359_+	regulator	M9NZI6	Enterobacteria_phage	1.2e-61	66.1
AUK23503.1\|4072355_4073375_+	Replication protein O	A0A0M5M7Y1	Salmonella_phage	5.3e-108	62.8
AUK23504.1\|4073371_4074073_+	Replication protein P	A0A0P0ZD31	Stx2-converting_phage	1.9e-128	98.7
AUK23505.1\|4074069_4074363_+	ArsR family transcriptional regulator	A0A0P0ZCJ0	Stx2-converting_phage	3.7e-38	84.9
AUK23506.1\|4074651_4075404_+	DUF4145 domain-containing protein	A0A1S6L018	Salmonella_phage	3.9e-31	36.5
AUK23507.1\|4075660_4076143_+	hypothetical protein	NA	NA	NA	NA
AUK23508.1\|4076234_4076336_+	hypothetical protein	NA	NA	NA	NA
AUK23509.1\|4076332_4076788_+	hypothetical protein	I6PD71	Cronobacter_phage	5.4e-60	67.5
AUK23510.1\|4076881_4078095_-\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	2.9e-169	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP024129

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

80 : 73589

Escherichia_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUK24650.1\|80_1293_+\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	2.9e-169	100.0
AUK24651.1\|1414_1693_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	8.8e-05	34.2
AUK24652.1\|2324_4985_+	peptidase M66	NA	NA	NA	NA
AUK24653.1\|5068_5944_+	type II secretion system protein GspC	NA	NA	NA	NA
AUK24749.1\|6001_7915_+	type II secretion system protein GspD	A7BJX1	Enterobacteria_phage	1.9e-26	27.6
AUK24654.1\|9414_10638_+	type II secretion system protein GspF	NA	NA	NA	NA
AUK24655.1\|10668_11103_+	type II secretion system protein GspG	NA	NA	NA	NA
AUK24656.1\|11099_11651_+	type II secretion system protein GspH	NA	NA	NA	NA
AUK24750.1\|11665_12013_+	type II secretion system protein GspI	NA	NA	NA	NA
AUK24657.1\|12009_12609_+	type II secretion system protein GspJ	NA	NA	NA	NA
AUK24658.1\|13620_14793_+	type II secretion system protein GspL	NA	NA	NA	NA
AUK24659.1\|14779_15295_+	type II secretion system protein M	NA	NA	NA	NA
AUK24751.1\|15462_16179_+	prepilin peptidase	NA	NA	NA	NA
AUK24660.1\|21703_21916_-	hypothetical protein	NA	NA	NA	NA
AUK24661.1\|23428_23707_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	8.8e-05	34.2
AUK24662.1\|29881_31384_+	type II secretion system protein GspE	NA	NA	NA	NA
AUK24663.1\|31385_32609_+	type II secretion system protein GspF	NA	NA	NA	NA
AUK24664.1\|33069_33621_+	type II secretion system protein GspH	NA	NA	NA	NA
AUK24752.1\|33635_33983_+	type II secretion system protein GspI	NA	NA	NA	NA
AUK24665.1\|33979_34579_+	type II secretion system protein GspJ	NA	NA	NA	NA
AUK24666.1\|34575_35553_+	pullulanase	NA	NA	NA	NA
AUK24667.1\|36752_37268_+	type II secretion system protein M	NA	NA	NA	NA
AUK24668.1\|38247_38649_+	lipoprotein, PulS/OutS family	NA	NA	NA	NA
AUK24669.1\|39928_41142_-\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	1.0e-166	97.6
AUK24670.1\|41253_41643_-	cytochrome b562 family protein	NA	NA	NA	NA
AUK24671.1\|41686_43897_-	Catalase-peroxidase 2	NA	NA	NA	NA
AUK24672.1\|44075_45288_+\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	2.9e-169	100.0
AUK24673.1\|45254_45350_+	AMP nucleosidase	A0A0N7BTS3	Escherichia_phage	2.4e-07	100.0
AUK24674.1\|46396_46762_-\|transposase	transposase	NA	NA	NA	NA
AUK24675.1\|47497_51241_+	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA58	Enterobacterial_phage	6.1e-218	38.9
AUK24676.1\|53186_53474_-	addiction module toxin RelE	NA	NA	NA	NA
AUK24677.1\|53546_54755_+\|transposase	IS4 family transposase	A0A0F7LAS3	uncultured_marine_virus	8.8e-235	99.8
AUK24678.1\|55120_56326_-	sodium/glutamate symporter	NA	NA	NA	NA
AUK24679.1\|56769_57090_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AUK24680.1\|57082_57469_+	amino acid-binding protein	NA	NA	NA	NA
AUK24681.1\|57476_58163_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AUK24682.1\|58140_58767_-	TetR family transcriptional regulator	NA	NA	NA	NA
AUK24683.1\|58845_60051_+	tetracycline efflux MFS transporter Tet(B)	NA	NA	NA	NA
AUK24684.1\|60163_60832_-	putative tetracyline resistance transcriptional regulator TetC	NA	NA	NA	NA
AUK24685.1\|61270_62479_-\|transposase	IS4 family transposase	Q9E8P4	Bluetongue_virus	7.5e-234	99.5
AUK24686.1\|62631_62895_-	plasmid stabilization protein	NA	NA	NA	NA
AUK24687.1\|63001_63226_-	hypothetical protein	NA	NA	NA	NA
AUK24688.1\|63203_63392_+	hypothetical protein	NA	NA	NA	NA
AUK24689.1\|63353_63602_-	replication protein	NA	NA	NA	NA
AUK24690.1\|64262_65475_+\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	1.0e-166	97.6
AUK24691.1\|66423_66666_+	hypothetical protein	NA	NA	NA	NA
AUK24692.1\|66932_67754_+	carbohydrate transporter	NA	NA	NA	NA
AUK24693.1\|67753_68860_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
AUK24694.1\|68953_70675_+	phosphoethanolamine transferase CptA	NA	NA	NA	NA
AUK24695.1\|70748_71747_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
AUK24696.1\|72050_73589_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	4.9e-299	99.6

DBSCAN-SWA_2

106141 : 113927

Escherichia_phage(28.57%)

integrase

attL 105798:105813|attR 121253:121268

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
105798:105813	attL	NA	NA	NA	NA
AUK24733.1\|106141_106825_-	DNA methylase	A0A2I7RE86	Vibrio_phage	8.7e-30	37.7
AUK24756.1\|107209_108112_-	DUF1281 domain-containing protein	NA	NA	NA	NA
AUK24734.1\|108149_108419_-	hypothetical protein	NA	NA	NA	NA
AUK24735.1\|108529_108778_+	protein ImpC	Q2A098	Sodalis_phage	1.9e-14	48.0
AUK24736.1\|108774_109212_+	peptidase	A0A1W6JNS2	Morganella_phage	1.1e-25	48.4
AUK24737.1\|109211_110483_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	1.4e-142	60.5
AUK24738.1\|110487_110916_-	plasmid stability protein	NA	NA	NA	NA
AUK24739.1\|110884_111856_-	plasmid segregation protein parM	A0A222YXF2	Escherichia_phage	7.4e-67	42.9
AUK24740.1\|112084_112729_+	chromosome partitioning protein ParA	A0A222YXS3	Escherichia_phage	1.9e-39	43.0
AUK24741.1\|112722_112998_+	CopG family transcriptional regulator	NA	NA	NA	NA
AUK24742.1\|113135_113927_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	9.4e-52	91.1
121253:121268	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP024130

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP024127

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP024129

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection