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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP017883 Bordetella pertussis strain I385, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 31 0

Results visualization

1. CP017883
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017883_1 250590-250674 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017883_2 432033-432126 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017883_3 995320-995414 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017883_4 1819825-1819952 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017883_5 3432503-3432612 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 64055 57 Natrialba_phage(12.5%) protease,tRNA,transposase NA
DBSCAN-SWA_2 69133 : 122073 53 Planktothrix_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_3 164892 : 301502 118 Klosneuvirus(10.53%) protease,tRNA,transposase NA
DBSCAN-SWA_4 390856 : 448365 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_5 619770 : 720234 110 uncultured_Caudovirales_phage(14.29%) tail,tRNA,terminase,transposase NA
DBSCAN-SWA_6 747159 : 820273 59 Streptococcus_phage(16.67%) transposase NA
DBSCAN-SWA_7 858764 : 912895 44 Vibrio_phage(25.0%) holin,transposase NA
DBSCAN-SWA_8 937394 : 999543 57 Bacillus_virus(15.38%) transposase NA
DBSCAN-SWA_9 1023347 : 1081432 50 uncultured_Mediterranean_phage(37.5%) tRNA,transposase NA
DBSCAN-SWA_10 1156548 : 1218671 52 Erysipelothrix_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_11 1269695 : 1326857 53 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_12 1572130 : 1643236 55 Ectocarpus_siliculosus_virus(11.11%) transposase NA
DBSCAN-SWA_13 1664075 : 1725423 54 uncultured_Caudovirales_phage(12.5%) tRNA,transposase NA
DBSCAN-SWA_14 1831611 : 1903121 60 Klosneuvirus(22.22%) tRNA,transposase NA
DBSCAN-SWA_15 1914373 : 1962790 47 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_16 1975223 : 2039544 54 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_17 2171121 : 2228400 49 Klosneuvirus(15.38%) tRNA,transposase NA
DBSCAN-SWA_18 2268608 : 2332138 50 uncultured_Caudovirales_phage(11.11%) protease,transposase NA
DBSCAN-SWA_19 2477079 : 2535323 53 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_20 2577649 : 2644101 58 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_21 2672264 : 2709628 40 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_22 2808755 : 2863272 49 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_23 2871297 : 2928083 41 uncultured_Mediterranean_phage(28.57%) protease,transposase NA
DBSCAN-SWA_24 2950462 : 3002112 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_25 3235672 : 3283290 46 Erwinia_phage(10.0%) tRNA,transposase NA
DBSCAN-SWA_26 3293217 : 3333167 27 Klosneuvirus(33.33%) integrase,protease,tRNA,transposase attL 3316014:3316032|attR 3335902:3335920
DBSCAN-SWA_27 3382105 : 3435798 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_28 3442001 : 3501251 50 Acinetobacter_phage(27.27%) tRNA,transposase NA
DBSCAN-SWA_29 3516237 : 3574310 50 Catovirus(12.5%) holin,tRNA,transposase NA
DBSCAN-SWA_30 3705431 : 3748602 41 Streptococcus_phage(11.11%) integrase,tRNA,transposase attL 3743441:3743459|attR 3749225:3749243
DBSCAN-SWA_31 3754537 : 3790212 37 Burkholderia_phage(11.11%) integrase,transposase attL 3751076:3751093|attR 3795716:3795733
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage