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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP017924 Bordetella pertussis strain J173, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 24 0

Results visualization

1. CP017924
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017924_1 250588-250672 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017924_2 432029-432122 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017924_3 995297-995391 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017924_4 1819794-1819921 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017924_5 3431409-3431518 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27282 : 122072 94 Planktothrix_phage(25.0%) transposase,tRNA,protease NA
DBSCAN-SWA_2 164892 : 301499 117 Klosneuvirus(10.53%) transposase,tRNA,protease NA
DBSCAN-SWA_3 390852 : 448361 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_4 619748 : 720212 110 uncultured_Caudovirales_phage(14.29%) transposase,tail,tRNA,terminase NA
DBSCAN-SWA_5 858741 : 912872 44 Vibrio_phage(25.0%) transposase,holin NA
DBSCAN-SWA_6 937371 : 999520 57 Bacillus_virus(15.38%) transposase NA
DBSCAN-SWA_7 1023324 : 1081410 50 uncultured_Mediterranean_phage(37.5%) transposase,tRNA NA
DBSCAN-SWA_8 1156524 : 1218647 52 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_9 1291657 : 1337386 44 Salmonella_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_10 1572101 : 1643207 55 Ectocarpus_siliculosus_virus(11.11%) transposase NA
DBSCAN-SWA_11 1664046 : 1725394 54 uncultured_Caudovirales_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_12 1831580 : 1903090 60 Klosneuvirus(22.22%) transposase,tRNA NA
DBSCAN-SWA_13 1914342 : 1962641 47 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_14 1974137 : 2038458 54 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_15 2174090 : 2228359 47 Klosneuvirus(15.38%) transposase,tRNA NA
DBSCAN-SWA_16 2576559 : 2643011 58 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_17 2671174 : 2708538 40 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_18 2807665 : 2862182 49 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_19 2870207 : 2926993 41 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_20 2949372 : 3001021 44 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_21 3234581 : 3282199 46 Erwinia_phage(10.0%) transposase,tRNA NA
DBSCAN-SWA_22 3292126 : 3332076 27 Klosneuvirus(33.33%) transposase,integrase,tRNA,protease attL 3314923:3314941|attR 3334811:3334829
DBSCAN-SWA_23 3400874 : 3464706 49 Staphylococcus_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_24 3469120 : 3586965 107 Acinetobacter_phage(22.22%) transposase,holin,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage