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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP017925 Bordetella pertussis strain J203, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 27 0

Results visualization

1. CP017925
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017925_1 250592-250676 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017925_2 432035-432128 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017925_3 996351-996445 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017925_4 1819802-1819929 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017925_5 3429323-3429432 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 64055 57 Natrialba_phage(12.5%) tRNA,transposase,protease NA
DBSCAN-SWA_2 69133 : 122073 53 Planktothrix_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_3 164895 : 301504 118 Klosneuvirus(10.53%) tRNA,transposase,protease NA
DBSCAN-SWA_4 390858 : 448367 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_5 619753 : 720217 110 uncultured_Caudovirales_phage(14.29%) tRNA,terminase,tail,transposase NA
DBSCAN-SWA_6 747142 : 820255 59 Streptococcus_phage(16.67%) transposase NA
DBSCAN-SWA_7 858746 : 977915 102 Bacillus_phage(13.33%) holin,transposase NA
DBSCAN-SWA_8 997315 : 1069832 59 Enterococcus_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_9 1157578 : 1219701 52 Erysipelothrix_phage(33.33%) tRNA,transposase NA
DBSCAN-SWA_10 1292712 : 1329477 36 Salmonella_phage(50.0%) transposase NA
DBSCAN-SWA_11 1418119 : 1470272 46 Salmonella_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_12 1572108 : 1643214 55 Ectocarpus_siliculosus_virus(11.11%) transposase NA
DBSCAN-SWA_13 1831588 : 1903098 60 Klosneuvirus(22.22%) tRNA,transposase NA
DBSCAN-SWA_14 1914350 : 1962761 47 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_15 1975194 : 2039515 54 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_16 2171091 : 2228369 49 Klosneuvirus(15.38%) tRNA,transposase NA
DBSCAN-SWA_17 2476001 : 2534245 53 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_18 2576570 : 2643022 58 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_19 2806626 : 2861143 49 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_20 2869168 : 2925953 42 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_21 2948332 : 2999982 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_22 3398787 : 3443859 39 Staphylococcus_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_23 3461603 : 3514008 50 Acinetobacter_phage(37.5%) tRNA,transposase NA
DBSCAN-SWA_24 3531174 : 3582205 48 Catovirus(10.0%) tRNA,holin,transposase NA
DBSCAN-SWA_25 3702251 : 3745422 41 Streptococcus_phage(11.11%) integrase,tRNA,transposase attL 3740261:3740279|attR 3746045:3746063
DBSCAN-SWA_26 3751357 : 3788081 38 Burkholderia_phage(11.11%) integrase,transposase attL 3747896:3747913|attR 3793585:3793602
DBSCAN-SWA_27 4026444 : 4079828 45 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage