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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP017926 Bordetella pertussis strain J230, complete genome 5 crisprs csa3,cas3,DinG,DEDDh 0 0 31 0

Results visualization

1. CP017926
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017926_1 250592-250676 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017926_2 432035-432128 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017926_3 995303-995397 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017926_4 1817709-1817836 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP017926_5 3430384-3430493 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 64055 57 Natrialba_phage(12.5%) transposase,protease,tRNA NA
DBSCAN-SWA_2 69133 : 122073 53 Planktothrix_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_3 164894 : 301504 118 Klosneuvirus(10.53%) transposase,protease,tRNA NA
DBSCAN-SWA_4 390858 : 448367 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_5 619754 : 720218 110 uncultured_Caudovirales_phage(14.29%) transposase,terminase,tail,tRNA NA
DBSCAN-SWA_6 747143 : 820256 59 Streptococcus_phage(16.67%) transposase NA
DBSCAN-SWA_7 858747 : 912878 44 Vibrio_phage(25.0%) transposase,holin NA
DBSCAN-SWA_8 937377 : 999526 57 Bacillus_virus(15.38%) transposase NA
DBSCAN-SWA_9 1023330 : 1081415 50 uncultured_Mediterranean_phage(37.5%) transposase,tRNA NA
DBSCAN-SWA_10 1156531 : 1218655 52 Erysipelothrix_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_11 1417073 : 1470253 47 Salmonella_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_12 1570014 : 1641120 55 Ectocarpus_siliculosus_virus(11.11%) transposase NA
DBSCAN-SWA_13 1661959 : 1723307 54 uncultured_Caudovirales_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_14 1829495 : 1901005 60 Klosneuvirus(22.22%) transposase,tRNA NA
DBSCAN-SWA_15 1912257 : 1960668 47 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_16 1973101 : 2037422 54 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_17 2168999 : 2218652 43 uncultured_Mediterranean_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_18 2474959 : 2533203 53 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_19 2575529 : 2641981 58 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_20 2670144 : 2707508 40 Planktothrix_phage(33.33%) transposase NA
DBSCAN-SWA_21 2806635 : 2861152 49 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_22 2869177 : 2925962 42 uncultured_Mediterranean_phage(28.57%) transposase,protease NA
DBSCAN-SWA_23 2948341 : 2999991 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_24 3233554 : 3281172 46 Erwinia_phage(10.0%) transposase,tRNA NA
DBSCAN-SWA_25 3291099 : 3331049 28 Klosneuvirus(33.33%) transposase,protease,integrase,tRNA attL 3313896:3313914|attR 3333784:3333802
DBSCAN-SWA_26 3380035 : 3433679 47 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_27 3439882 : 3499132 50 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_28 3514118 : 3572191 50 Catovirus(12.5%) transposase,holin,tRNA NA
DBSCAN-SWA_29 3705410 : 3748581 41 Streptococcus_phage(11.11%) transposase,integrase,tRNA attL 3743420:3743438|attR 3749204:3749222
DBSCAN-SWA_30 3754516 : 3790191 37 Burkholderia_phage(11.11%) transposase,integrase attL 3751055:3751072|attR 3795695:3795712
DBSCAN-SWA_31 4028555 : 4081939 45 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage