CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP018040	Bordetella pertussis strain J304 chromosome, complete genome	6 crisprs	csa3,cas3,DinG,DEDDh	1	0	25	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP018040_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP018040_1

250574-250658

Orphan

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP018040_1

>merge|CP018040|1|250574-250658|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAGGGTGCCTGTCCCCGCGGGGACAG

>CP018040|1|1|250574-250658|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAG
GGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP018040.1\|AUL02812.1\|251606_253496_-\|DNA-mismatch-repair-protein-MutL	unknown	unknown	gnl\|CDD\|234630
CP018040.1\|AUL02806.1\|246020_246512_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|172582
CP018040.1\|AUL02807.1\|246508_247864_-\|poly(A)-polymerase	unknown	unknown	gnl\|CDD\|130997
CP018040.1\|AUL02803.1\|239531_240275_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
CP018040.1\|AUL02819.1\|260945_262700_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
CP018040.1\|AUL05922.1\|242375_243635_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129868
CP018040.1\|AUL02813.1\|254363_255749_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|182376
CP018040.1\|AUL02810.1\|249513_250563_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
CP018040.1\|AUL02814.1\|255679_256216_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|223873
CP018040.1\|AUL02815.1\|256367_257759_+\|fumarate-hydratase,-class-II	unknown	unknown	gnl\|CDD\|234779
CP018040.1\|AUL02805.1\|245045_246002_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270296
CP018040.1\|AUL05923.1\|253600_254221_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182775
CP018040.1\|AUL02816.1\|257775_258756_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223751
CP018040.1\|AUL02811.1\|250668_251610_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
CP018040.1\|AUL02808.1\|247864_248563_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319796
CP018040.1\|AUL02809.1\|248559_249261_-\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|236347
CP018040.1\|AUL02817.1\|258891_259875_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270295
CP018040.1\|AUL02804.1\|240318_241362_-\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270320
CP018040.1\|AUL02802.1\|238759_239515_+\|gamma-hydroxybutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|185358
CP018040.1\|AUL02818.1\|259939_260839_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107

Protein	Function_ID	Function_description	E-value
CP018040.1\|AUL02812.1\|251606_253496_-\|DNA-mismatch-repair-protein-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
CP018040.1\|AUL02806.1\|246020_246512_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|172582	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.	2.78166e-87
CP018040.1\|AUL02807.1\|246508_247864_-\|poly(A)-polymerase	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	4.58369e-147
CP018040.1\|AUL02803.1\|239531_240275_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.58304e-45
CP018040.1\|AUL02819.1\|260945_262700_+\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
CP018040.1\|AUL05922.1\|242375_243635_+\|hypothetical-protein	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.48771e-95
CP018040.1\|AUL02813.1\|254363_255749_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	1.25625e-84
CP018040.1\|AUL02810.1\|249513_250563_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
CP018040.1\|AUL02814.1\|255679_256216_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	2.28113e-54
CP018040.1\|AUL02815.1\|256367_257759_+\|fumarate-hydratase,-class-II	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
CP018040.1\|AUL02805.1\|245045_246002_+\|hypothetical-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	6.01101e-118
CP018040.1\|AUL05923.1\|253600_254221_+\|hypothetical-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	8.25718e-70
CP018040.1\|AUL02816.1\|257775_258756_-\|hypothetical-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.13912e-41
CP018040.1\|AUL02811.1\|250668_251610_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	4.17279e-156
CP018040.1\|AUL02808.1\|247864_248563_-\|hypothetical-protein	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.91431e-64
CP018040.1\|AUL02809.1\|248559_249261_-\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|236347	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated.	2.81236e-100
CP018040.1\|AUL02817.1\|258891_259875_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270295	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	4.35876e-158
CP018040.1\|AUL02804.1\|240318_241362_-\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.99378e-85
CP018040.1\|AUL02802.1\|238759_239515_+\|gamma-hydroxybutyrate-dehydrogenase	gnl\|CDD\|185358	PRK15461, PRK15461, sulfolactaldehyde 3-reductase.	1.19571e-122
CP018040.1\|AUL02818.1\|259939_260839_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.62875e-38

>CP018040.1|AUL02810.1|249513_250563_+|phosphoribosylformylglycinamidine-cyclo-ligase
MTNQHSAPLTYRDAGVDIDAGDALVDRIKPLAARTMRPGVLAGIGGFGALFEVPKKFREPVLVSGTDGVGTKLRLAFDWNRHDTVGIDLVAMSVNDILVQGAEPLYFLDYFACGKLSVDTAAAVVGGIARGCELAGCALIGGETAEMPGMYPDGEYDLAGFAVGAVDKSAIIDGKSIQPGDVVLGLASSGAHSNGYSLVRKILERAGARPDQDFHGQPLVDVVMAPTRIYVKQVLAALDRHGPAIKGLAHITGGGLLDNVPRILQPGMAAQLQRDGWEMPKLFQWLQQQGSVADAEMHRVFNCGIGMVLVVAADQADAVAATLREQGEIVNRIGEIVPQQDGMAQTVVV
>CP018040.1|AUL02809.1|248559_249261_-|DnaA-regulatory-inactivator-Hda
MNRQLLLDVLPAPAPALNNYIAGPNGQALAAAHALTAGRAIYLWGPAGCGRTHLLRGLSARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESAATGRAFALAVSGDRAPMSLPLREDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQLAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPHSQAT
>CP018040.1|AUL02808.1|247864_248563_-|hypothetical-protein
MTTRRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAWHEEFMRDVIRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAANPSPGLREIAQARGWQVIDLFDHLEDAKS
>CP018040.1|AUL02807.1|246508_247864_-|poly(A)-polymerase
MITETIRKFVGRLFAPALRGPQRIGAERHGIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRNDGLHHGLLPLLDVVLEQPGGENFVELALERTDARVRAGKTISPSFLFAALLWQLVDVRWKQLRAQGEHNIPALVQAADSVLDEQTEKLAIQRRFSSDMREIWFMQPRFERRAGKTIYRMLEQPRFRAACDFLQLRAAAGEFDSVLAQWWMDLANGDDATRAEMIEETAHLPRETGDAPAQKRRRPRRRPSNRPREPQ
>CP018040.1|AUL02806.1|246020_246512_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MNGSPASTLAYVGLGASLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVEAQGPDFVNAVAALDTTLAPLDLLDLLQALEQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRMHERAFVLAPLCELVPALRLAQGDCAALLAALEDQAIEPLR
>CP018040.1|AUL02805.1|245045_246002_+|hypothetical-protein
MKKRIWGTLLAAAMTVGSGAAHAGYPDKAVRIVVPFAAGGGVDALARPFAKELGDILGQSIVVENKPSNTGQIGATDVARAAADGYTLLLSSAAFATTPAFYPQVPYDPVKDFSPVMIMAAAPQVLVASNRFKAASLPDVLAQARQSDRINFALSASTGIQALATAMLAGQGGVTFMTIPYKGAGAAFMDLISGEVDLMIDNPASSLVHVRAGKLRVLATTGSKRMAILPDVPTVAETLPGFEARNWFVLAAPQGTPPAVIQKLNEASARALNTPAMRQMLERDGIDLVADSPAHAAAFLQDEIAKWGKVVKEGNLQP
>CP018040.1|AUL05922.1|242375_243635_+|hypothetical-protein
MMLLLFLGVRIGVALGLVGLFGVYFLLSRPQLSLLAERAWSSTNTFTLTAVPMFIFMGGLLLRSGITAGMFDALVRWFGRAPGGLAHASAGASAVFAAVSGSSLATAATLGKVACPDMIERGYSPRLTYGVAAAGATLGILIPPSIPMIIYGTTVGASVTHLFLAGMLPGLLLMACFMLGALVWALAVPGSAPVARAYTLREKLSASRGMVPFVAIIGAVLGSMYTGVATPTEAAAIGAVSAFVLCLVRRQLSWRALFEIAHDSAKVTALLLLIVVGAGIFSWVFDYLRLPREVVNLIQGADLSPALIVAAMVLAYLVLGMFVESIAMMLMTLPVTYPIAMSLGLDPIWFGVFLVLMIELGLITPPVGMVLFVLRSMNEKARFTDIIRGALPFVLIILLFLCLIYIYPQIVMWLPQQVK
>CP018040.1|AUL02804.1|240318_241362_-|C4-dicarboxylate-ABC-transporter-substrate-binding-protein
MSQRFPLPRGFQAALAAAALCTASWSGAAAAQTYDLTMAVITSPGDGYSILTASVPERVAKATDGKVKVTVSDSLVPPAQIATAVREGRVDMSAALHTYLAADEPRMGIFNLPGLINNIQEYKQVCDAFWCEDTRKIWKDKWNAIVLAEGAWCTQQLFSKDPIHKVEDFKGKRLRVHNPQTAEVVNALGGKPVAMPTTEIFPALERGVIDGLFISTCVGGSLEFWRIAKNVQNWSLGPINGWAILANPDSWQKLPADVQKQVQGAMDALQQEAFGNYDTFVSNAQQEMMKKGVTFWVAPEEERAKLMQQQYIGPSYEAWNKRAKQVGFDGPAYLDRVRTTLGKSASN
>CP018040.1|AUL02803.1|239531_240275_-|GntR-family-transcriptional-regulator
MPFPFCNTNRMTSPAAPEGEFKVQRVASVLRHSVTESIRNAILVGRFRPGERLPERELCEMTGVSRTLVREALRQLESEGLIVVIPHRGPVVERLSPEQARGIYQVREELEGLACQLFAEHATEPQLAALQEAFQALKRALTRGTPLEQIAAKNAFYQQLLDGAGNEALTTTLRLLNSRVMLLRSTSMQAPGRAKHSVAELSNLLQALVARDGKAARKAGSLHVRNAASVAIAILQDSLADAAATAE
>CP018040.1|AUL02802.1|238759_239515_+|gamma-hydroxybutyrate-dehydrogenase
MLPTATHIQAALEGADGALQGMGPGALFINMSTILPQETDLIAQRLAERGMRMLDSPVGRSAMEAQRGTLLILASGSAQDKARARDALLCMGNQVIDCGEVGGGSRVKVVNNFMGISLNALTAEALTLAEASGLSVELALEVMRGTIAGLGHMNITYPNKVLRGDLSAGFQVDLAHKDLGLALELAARSRACVPMGSAAFQSYTAARAQGRGGQDYSAIYPVMRSLSGLPEALPYQVDTPVEADPFGAAAR
>CP018040.1|AUL02811.1|250668_251610_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MTPRAIICLAGPTAAGKSASTLALAQRWPLEIINVDSATIYRGMDIGTAKPSAAERAQVPQHLLDIRDPAQSYSAAEFRADALRLIAEIHARGRIPLLAGGTMLYYKALREGLDDLPQADPALRAELEARAARLGWPALHAELALLDPATAARLSPNDSQRIQRALEICRLAGQPMSALLQGERRGDAPSPYRYVTLSLEPSERAALHARIAQRFDAMLAAGLVEEVRGLHARPDLHPGLPSVRCVGYRQMWSYLDGDIDLDTAREQGVAATRQLAKRQLTWLRAQPERVIIDCLAGDAVARTVDAMARALPD
>CP018040.1|AUL02812.1|251606_253496_-|DNA-mismatch-repair-protein-MutL
MSDRRPIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGSGIPPEELPLALTRHATSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAWQIDGGSLQVSPASGPPGTTIDVRQLFDRVPARRKFLRSEATEFGHCVDAMERIALAHPEVAFRLFHHDRAQRQWLPADHGQRIRDVLGAEFVGHVLPVLAAAGAIALMGMVTRPTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNVHPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGVPDGAAPDTAYAGEPAAAAPGLAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGIPATDWQSLYRPLPGDAAPAATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKRALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLARGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQMEITERADQCNHGRPTWVQWSVNDLDKLFLRGQ
>CP018040.1|AUL05923.1|253600_254221_+|hypothetical-protein
MVLHIDQTLGIWVEQYGVWVYLVLFLIVFAETGLVVLPFLPGDSLLFIAGAFGATGHMDPVLTAALLIVAAISGNTVNYTIGRYIGPRVFSMNLRFLDRNALMRTHAFYEKHGGKTIVMSRFIPVIRTFAPFVAGVADMRLARFQLFNIGGALLWVISLVAAGYFFGNIPLVREHLNTIVLIGLGAAIVPVVIGALVRLLQVRRGQ
>CP018040.1|AUL02813.1|254363_255749_-|N-acetylmuramoyl-L-alanine-amidase
MVERDCPPAHGALSPRAAARRRLISVAATLLVLPVVPRLAHAATILAVRTWPADEYTRVTLELDSELKAEHFTLENPHRLVVDIEGLSVNAALNDLVSKVRHDDPYIQGLRVAQNRPNVVRLVFDLKQSVAPQVFTLKPVADYQYRLVLDLYPKVAQDPLMAILNKQSGPDVDDPLARVLDEIARNQPAPDQPAAPLARGQEPAPALPAPPIKPLPAPGRSASRKRMLTIALDPGHGGEDPGAIGRSGLREKDVVLRIARRLKTLIDAQPYMRAYLTRDDDYFVPLHVRVQKARRVRADLFVSIHADAFIKPTANGSSVFALSERGASSTQARWLADKENAADLIGGVNLGSHDRQVAKVLLDLSTTAQINDSLKVGSAFLDEIKKINRLHKNRVEQAGFAVLKAPDIPSILVETAFISNPKEEALLRSAAHQEKLAQAMMTGIDRYFTANPPLARVGDVS
>CP018040.1|AUL02814.1|255679_256216_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MSAPPTTLCLHLPDEAATENLARQLAPLVDGRRGGQPGGQIHLQGDLGAGKTAFTRALLRECGIQGRIKSPSYALLESYKVSNLYFYHLDFYRFSDSREWLDAGFRDLLRDDAVVLIEWPERAAGLLPPPDLLISLAYADQGRDASLTAHTARGQTWLNAIVPPPTARSLPAPPPADA
>CP018040.1|AUL02815.1|256367_257759_+|fumarate-hydratase,-class-II
MKTRTEKDTFGPIEVPEQHLWGAQTQRSLHFFAISTEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVIAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPALKALRGTLAAKSAAFYDIVKIGRTHLQDATPLTLGQEISGYVAQLDLAEQQIRATLAGLHQLAIGGTAVGTGLNAHPQFSAKVSAELAHDTGSAFVSAPNKFQALASHEALLFAHGALKTLAAGLMKIANDVRWLASGPRSGLGEISIPENEPGSSIMPGKVNPTQCEAVTMLAAQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDMTNARR
>CP018040.1|AUL02816.1|257775_258756_-|hypothetical-protein
MSENSSLRRDAEAPLLSIFLPGSMSVALLVLPDFMLVALGWALRHKLGFSREFFAGTERMVYFVLFPALLFQSILRTPISAGHAMQLLQATAALMACGVALAWLAGPVLRPAPVALASAAQCGYRFNTYIGLALAASLAGGPGQTIMALIVGFAVPMANVAAVYGLARHSGNGLLRELARNPLLVSTLLSLACNLAGLSLPGPIDTVMARLGAAALALGIMCVGASLAWEGGKGHGRLIGWMLAVKLAAMPSAALGIAWALGLPALETRMLVLFSALPTASAAYVLAMRMGGDGRMVAVLISLGTLASAATIPLWLTAAAGLGAPN
>CP018040.1|AUL02817.1|258891_259875_+|ABC-transporter-substrate-binding-protein
MNKVRTLVQAIAVATGLVAAAGAQAADAYPSKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQGSAPSGNTPEEFAKEIKEQYDWAQDVVKKQNIKLD
>CP018040.1|AUL02818.1|259939_260839_-|LysR-family-transcriptional-regulator
MRLRHIEIFEAIRRTGSLTEAAAALHISQPAASKLLAHAEAQLGFKLFERVKGRLVATREAEILAPEVARLNQDLGSVRRLAASLRDRPHGHLRLGCAPALGLGLLPGVVRASRDAQPGITFDIHTHHSAELVQGLLAHELDLAITFDANNHPGLTRTSLGHTELVHLSRLPGAGTTRLQELGGETLIVLDARDASGSLLQMALDAQGLAPRVAIQVQTHYVACALAEAGCGDAVVDAITARAMLRPGMALRRLEPALRVPISVMTRSQDALSTLHHDFIERLRQACSVLQAQPAPQPE
>CP018040.1|AUL02819.1|260945_262700_+|gamma-glutamyltransferase
MPLRTLLAALCAAAICQAPAWAREAPGVAREDVNPEIASARSERAQAHAQRYMIATANPLASEAGYRILRAGGSATDAIIAAQLVLNLVEPQSSGIGGGAFMVHYDRGAGELRVYDSRETAPAAARPDRFLREGKPLSYAESVNNGRAVGTPGLLRGLELAHRQHGKLPWQALFEPAIAMAEQGFAVSPRLHESIAGDKALAAQPAAARYFYGPDGQAWPVGHRLRNPEFAATLRSIAREGADAFYRGPIARDIVAAVRAHPTPGDLAEADLAGYRAVVREPVCGLYRGYRLCGAPPPSSGPLAVLQMLGELEQYPLARMRPGSVEAVHYFSEAGRLAFADRDFYVADPAFVDVPVRALLDPAYLRQRGALIRPDRSMKTALPGDPQGLLAERARDDAIEVPSTSHLVAVDAAGNVVSMTSTIEAAFGSKIFVRGFLLNNEMTDFSSSYRDPEGRLVANRVEPGKRPRSSMAPMIVFRAGKPVLALGSPGGSAIINYVAKTLVGVLDWKLDVQQAIALPNLGSRNKETELERGTALEALAPALRRMGHEVRITDFPSGIQGIVIGPHGLAGGADPRREGLALGD

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Crispr_ID: CP018040_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP018040_2

432012-432105

Orphan

Consensus_repeat	Method
GTGCCTGTCCCCGCCGGGACAGGCAC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP018040_2

>merge|CP018040|2|432012-432105|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCACCCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGCGTGCCTGTCCCCGCCGGGACAGGCAC

>CP018040|2|2|432012-432105|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCAC	CCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGC
GTGCCTGTCCCCGCCGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP018040.1\|AUL02967.1\|421126_422104_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
CP018040.1\|AUL02977.1\|436383_436902_-\|methyltransferase	unknown	unknown	gnl\|CDD\|224204
CP018040.1\|AUL02971.1\|427121_427856_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
CP018040.1\|AUL02969.1\|423501_425013_+\|TRAP-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270238
CP018040.1\|AUL02982.1\|441022_442000_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
CP018040.1\|AUL02965.1\|419351_420410_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133030
CP018040.1\|AUL02968.1\|422299_423505_+\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|129314
CP018040.1\|AUL02983.1\|442125_443298_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
CP018040.1\|AUL02979.1\|437963_439196_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
CP018040.1\|AUL02975.1\|432750_433095_-\|TIGR01244-family-protein	unknown	unknown	gnl\|CDD\|225984
CP018040.1\|AUL02972.1\|430348_431251_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
CP018040.1\|AUL02973.1\|431382_431781_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
CP018040.1\|AUL02974.1\|432191_432662_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
CP018040.1\|AUL02980.1\|439188_439974_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|181723
CP018040.1\|AUL02966.1\|420539_421034_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP018040.1\|AUL05932.1\|425028_426342_-\|short-chain-fatty-acid-transporter	unknown	unknown	gnl\|CDD\|224942
CP018040.1\|AUL02978.1\|437012_437768_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223930
CP018040.1\|AUL02970.1\|426532_426712_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377342
CP018040.1\|AUL02976.1\|433194_434595_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089
CP018040.1\|AUL02981.1\|440040_441012_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234

Protein	Function_ID	Function_description	E-value
CP018040.1\|AUL02967.1\|421126_422104_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.0826e-23
CP018040.1\|AUL02977.1\|436383_436902_-\|methyltransferase	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.12064e-44
CP018040.1\|AUL02971.1\|427121_427856_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	2.40573e-142
CP018040.1\|AUL02969.1\|423501_425013_+\|TRAP-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270238	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This group includes Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family and closely related proteins. TRAP transporters are ubiquitous in prokaryotes, but absent from eukaryotes. They are comprised of an SBP (substrate-binding protein) of the DctP or TAXI families and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function. The substrate-binding domain of TAXI proteins belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and tworeceptor cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.13066e-82
CP018040.1\|AUL02982.1\|441022_442000_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	2.33368e-60
CP018040.1\|AUL02965.1\|419351_420410_-\|glycosyltransferase	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	4.18053e-89
CP018040.1\|AUL02968.1\|422299_423505_+\|sodium/glutamate-symporter	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	1.2444e-106
CP018040.1\|AUL02983.1\|442125_443298_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	4.27565e-82
CP018040.1\|AUL02979.1\|437963_439196_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.36236e-118
CP018040.1\|AUL02975.1\|432750_433095_-\|TIGR01244-family-protein	gnl\|CDD\|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
CP018040.1\|AUL02972.1\|430348_431251_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.3673e-23
CP018040.1\|AUL02973.1\|431382_431781_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	1.37761e-90
CP018040.1\|AUL02974.1\|432191_432662_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30
CP018040.1\|AUL02980.1\|439188_439974_+\|enoyl-CoA-hydratase	gnl\|CDD\|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	5.15941e-155
CP018040.1\|AUL02966.1\|420539_421034_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.34959e-07
CP018040.1\|AUL05932.1\|425028_426342_-\|short-chain-fatty-acid-transporter	gnl\|CDD\|224942	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism].	6.57351e-166
CP018040.1\|AUL02978.1\|437012_437768_+\|hypothetical-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
CP018040.1\|AUL02970.1\|426532_426712_-\|hypothetical-protein	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	0.00323203
CP018040.1\|AUL02976.1\|433194_434595_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.43796e-109
CP018040.1\|AUL02981.1\|440040_441012_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.06741e-117

>CP018040.1|AUL02973.1|431382_431781_-|elongation-factor-G
MTRRTSIERYRNIGISAHIDAGKATTTERILFYTGITHKLGEVHEGAATMDWMEQEQGRGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQEVATVMVVLPGQ
>CP018040.1|AUL02972.1|430348_431251_+|IS481-family-transposase
MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>CP018040.1|AUL02971.1|427121_427856_-|DNA-polymerase-III-subunit-epsilon
MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPDRDSDPEALAVHGLTTEFLADKPRFAEVAEQFLAFIADAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENIVDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDDQGANANGALVLGKFDASVLTVLAASEAELAEHAAYLQALDKAVGGACAWRAIEPLPAESGQPG
>CP018040.1|AUL02970.1|426532_426712_-|hypothetical-protein
MHPDTNTMLIIIAAAVALMIVGFGLRDRNLGLGLLGIGLIAALATIAYKAYITFNSFYY
>CP018040.1|AUL05932.1|425028_426342_-|short-chain-fatty-acid-transporter
MFKLMSRSAVKMVERYLPDPYVFVVLLTLVAAGAAMIIEGQTPMAVVRWWGNGFWGLLTFAMQMLLVLVTGYMLASTPLVKRMLARLASLATSAGGAIILVSVVSLAASWINWGFGLVVGALFAKQIARQVRVDYRLLVASAYSGFIIWHGGLAGSIPLTIATEGHFSADKIGIIPTGDTIFAVFNLVIVVAMFILVPLVNRLMLPDEKESVYVDPARLEEASVPASDDDKRPAARLENSRLLAWLIAAGGLAYMFDYYVVRGAGLNLNVINFSFLILAILLHGTPRRLLASLDEAIKGGAGIVIQFPFYAGIMAIMMDSGLAATLSEWFVSIASAATLPFWTFISAGIVNIFIPSGGGQWAVQSPIVISAAQALGADMPRVAMAVAWGDAWTNMLQPFWALPVLAIAGLKAKDIMGYCIIQLLVTGVIISVGLSFF
>CP018040.1|AUL02969.1|423501_425013_+|TRAP-ABC-transporter-substrate-binding-protein
MTMFIRWLILSACLLLAACSRAPDTEILQRDVGQTLAATYGPDLFDIVALRRMGSATDSTAPPGQTRRVVYYDVVLGLKKDLTLGAWDQPGAAALVSLLGAGPRSISGVKSSGNAAGDQIVAHASAIYQRDAEQWVHVAPASFTATEAPSLDTGAPPPVTRQLLQTLEQITRSVPYSASSTAQHVVQQELERSVARINGRLARLQKGYPLATGPDKGEYLAFGQALAAIGRNEQVRVIPLITGGSADNMAMLRSGAAVAALSQADIAQLAYEGKGPFESQGPFSGLRALGSLYPELVHIVVRQGDGIATVGALRGKKIALGPSGSAVRTTLETVLAAHGLQPGRDYAVIDTPAAAALPQLSEGRVDAVAQVIGTPAAPLRAALTQARLALLPLDRAAIDKLVQADPTLMALDIPANTYPSQAAAIPTVGMAALLVTTADLTRDEAAHMVDVVYRAGQDLLAAGSAQGAQVSAANAGRGLSIPLHDGAVEAFEKLGAPPLPEGR
>CP018040.1|AUL02968.1|422299_423505_+|sodium/glutamate-symporter
MISLTPVQSLLACCLVLVAGRILTTRIGVLSRYSIPDPIVGGLLFAVLATALDTWGGIQISLETNIKPTLLLIFFGCIGLTADLKLLARGGPRLIAFLLALIPFLVLQNAVGLGLAWLLDMHPLMGLIGGTITLVGGHGTGAAYAARFADINNIQDVMALAMTAATIGLVLGGIIGGPVAEWLIRRHKLDPRMAGKDANQVLPEVETTAEAPTATSFITSLTAVFVTVVVGTYLAGLVEDAPISLPNFLWCLATGAIIRNFGGYVGIRLDDRVSEIIGSISLSLFLGLTMMTLDLSSVVRLAGPLALMLVAQALVCALYAGWAVFRMLKRDYEAAVMAAAFCGFAMGATATAIANMQALTRRHGPAPESFIVVPVTGAFLVDILNVIVLTSLIALPFVGGM
>CP018040.1|AUL02967.1|421126_422104_+|IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHSYMVRADLAG
>CP018040.1|AUL02966.1|420539_421034_+|GNAT-family-N-acetyltransferase
MPQSYIVRTMRPADVEAVLRVQAAVYPASLLESAALFQNRIEIAPATCQVALDGQDLIGYLIAYPWDAGLPPALDRSLERLPGAADTWFVHDCAVLPAAQGGGVAAALLAGGRAQARRLGLRRASLVALAQAVGYWLRHGYQPLADSDALRAKLAGYGDGARYM
>CP018040.1|AUL02965.1|419351_420410_-|glycosyltransferase
MFMYTEFRSQLLAGAGTSAAGQSARMAVLAGDGATGVQVSCVVPGLNEAANLRVLVPALRACLEQWCASWEIIVVDDGSTDDTAELMAQWSAVEGIRYVQLSRNFGKEAALTAGLEAADGDAVICLDADMQHPPELIGDMLAAWRNGADMVYAVRRQRDDEPWFKRVGARAFYRLLSTARGVEVPPHAGDFRLMDRRVVEALVALPERTRFMKGLYAWVGFKSQAVPYTPQARRHGASHFSAWKLFRLACDGLTAFTTWPLRLVSLIGVLFALLSLSYGGYLVADYLISGNAVSGWTTIVTALLFFAGINLISLGVVGEYVARIFDEVKGRPLFIARQRRGRAKRAAKARSQ
>CP018040.1|AUL02974.1|432191_432662_-|universal-stress-protein
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>CP018040.1|AUL02975.1|432750_433095_-|TIGR01244-family-protein
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>CP018040.1|AUL02976.1|433194_434595_-|GntR-family-transcriptional-regulator
MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRHGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPIGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYQRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>CP018040.1|AUL02977.1|436383_436902_-|methyltransferase
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGVIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAARDDKRVVAQPPP
>CP018040.1|AUL02978.1|437012_437768_+|hypothetical-protein
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>CP018040.1|AUL02979.1|437963_439196_+|CoA-transferase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAAARQLPEGTDHD
>CP018040.1|AUL02980.1|439188_439974_+|enoyl-CoA-hydratase
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSLQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG
>CP018040.1|AUL02981.1|440040_441012_+|ABC-transporter-substrate-binding-protein
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE
>CP018040.1|AUL02982.1|441022_442000_-|LysR-family-transcriptional-regulator
MWTGQYIVHIASPAHHWRRAVELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>CP018040.1|AUL02983.1|442125_443298_+|acyl-CoA-dehydrogenase
MGAILGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAVGAPVSAHWVADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRCDAAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR

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Crispr_ID: CP018040_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP018040_3

995255-995349

Orphan

Consensus_repeat	Method
TAAAAGGGCACCCGCAAGGGTGTCCTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP018040_3

>merge|CP018040|3|995255-995349|CRISPRCasFinder
TAAAAGGGCACCCGCAAGGGTGTCCTTTTATTGCGAAAAGATATCTGGAAGAAAGCCTTTTCAGAGTAAAAGGGCACCCGCAAGGGTGCCTTTTT

>CP018040|3|3|995255-995349|CRISPRCasFinder
TAAAAGGGCACCCGCAAGGGTGTCCTTTT	ATTGCGAAAAGATATCTGGAAGAAAGCCTTTTCAGAG
TAAAAGGGCACCCGCAAGGGTGCCTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
CP018040.1\|AUL03452.1\|1007301_1008684_+\|multidrug-transporter	unknown	unknown	gnl\|CDD\|273830
CP018040.1\|AUL03453.1\|1008753_1009005_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225170
CP018040.1\|AUL03442.1\|991813_993088_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
CP018040.1\|AUL05962.1\|998461_999478_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
CP018040.1\|AUL03445.1\|994807_995188_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
CP018040.1\|AUL03440.1\|986748_987531_+\|sulfate-ABC-transporter-permease-subunit-CysW	unknown	unknown	gnl\|CDD\|226665
CP018040.1\|AUL03439.1\|985959_986634_+\|sulfate-ABC-transporter-permease-subunit-CysT	unknown	unknown	gnl\|CDD\|131194
CP018040.1\|AUL03441.1\|987555_988620_+\|sulfate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213263
CP018040.1\|AUL03443.1\|993241_993622_+\|hypothetical-protein	unknown	unknown	unknown
CP018040.1\|AUL03449.1\|1000985_1001558_-\|chorismate--pyruvate-lyase	unknown	unknown	gnl\|CDD\|225703
CP018040.1\|AUL03448.1\|997274_998324_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381320
CP018040.1\|AUL03444.1\|993629_994502_-\|multidrug-DMT-transporter-permease	unknown	unknown	gnl\|CDD\|274527
CP018040.1\|AUL03446.1\|995437_996124_+\|coenzyme-A-pyrophosphatase	unknown	unknown	gnl\|CDD\|239518
CP018040.1\|AUL05961.1\|989417_990326_+\|sulfate-adenylyltransferase-small-subunit	unknown	unknown	gnl\|CDD\|235375
CP018040.1\|AUL03451.1\|1004125_1007305_+\|multidrug-efflux-RND-transporter-permease	unknown	unknown	gnl\|CDD\|273335
CP018040.1\|AUL03438.1\|985734_985938_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131194
CP018040.1\|AUL03450.1\|1001617_1002349_+\|pseudouridylate-synthase	unknown	unknown	gnl\|CDD\|224108
CP018040.1\|AUL05963.1\|1002400_1003318_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
CP018040.1\|AUL03437.1\|984684_985719_+\|sulfate-transporter-subunit	unknown	unknown	gnl\|CDD\|224529
CP018040.1\|AUL03447.1\|996219_997170_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234

Protein	Function_ID	Function_description	E-value
CP018040.1\|AUL03452.1\|1007301_1008684_+\|multidrug-transporter	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	9.9815e-102
CP018040.1\|AUL03453.1\|1008753_1009005_-\|hypothetical-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	2.42408e-12
CP018040.1\|AUL03442.1\|991813_993088_+\|radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	4.71758e-24
CP018040.1\|AUL03445.1\|994807_995188_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.34063e-62
CP018040.1\|AUL03440.1\|986748_987531_+\|sulfate-ABC-transporter-permease-subunit-CysW	gnl\|CDD\|226665	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism].	8.42883e-141
CP018040.1\|AUL03439.1\|985959_986634_+\|sulfate-ABC-transporter-permease-subunit-CysT	gnl\|CDD\|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	5.60551e-119
CP018040.1\|AUL03441.1\|987555_988620_+\|sulfate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213263	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter. Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	3.07125e-165
CP018040.1\|AUL05962.1\|998461_999478_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	2.74666e-23
CP018040.1\|AUL03449.1\|1000985_1001558_-\|chorismate--pyruvate-lyase	gnl\|CDD\|225703	COG3161, UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) [Coenzyme metabolism].	1.05194e-17
CP018040.1\|AUL03448.1\|997274_998324_+\|aldo/keto-reductase	gnl\|CDD\|381320	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins. Escherichia coli Tas protein is the prototype of this family. It is an NADP(H)-dependent aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NADP(H) as a hydride donor.	0
CP018040.1\|AUL03444.1\|993629_994502_-\|multidrug-DMT-transporter-permease	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	3.74356e-26
CP018040.1\|AUL03446.1\|995437_996124_+\|coenzyme-A-pyrophosphatase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	2.60589e-72
CP018040.1\|AUL05961.1\|989417_990326_+\|sulfate-adenylyltransferase-small-subunit	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP018040.1\|AUL03451.1\|1004125_1007305_+\|multidrug-efflux-RND-transporter-permease	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
CP018040.1\|AUL03438.1\|985734_985938_+\|hypothetical-protein	gnl\|CDD\|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	4.38349e-06
CP018040.1\|AUL03450.1\|1001617_1002349_+\|pseudouridylate-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	7.73356e-72
CP018040.1\|AUL05963.1\|1002400_1003318_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.56316e-67
CP018040.1\|AUL03437.1\|984684_985719_+\|sulfate-transporter-subunit	gnl\|CDD\|224529	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism].	0
CP018040.1\|AUL03447.1\|996219_997170_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.66858e-23

>CP018040.1|AUL03445.1|994807_995188_+|50S-ribosomal-protein-L19
MNLIAILEQEEIARLTGGNAVTEFAPGDTVVVSVNVVEGTRKRVQAFEGVVIAKRNRGLNSSFIVRKISSGEAVERTFQLYSPQIAGIEVKRRGDVRRAKLYYLRSRSGKSARIKEKLVLKKAKSA
>CP018040.1|AUL03444.1|993629_994502_-|multidrug-DMT-transporter-permease
MSYTSLILVVLAAMAHAAWNLLAKRAAMVGPMFVFAYGLAATILYAPWVIWVLAHDGMVWSWPVVLCILASSMLHLGYSLCLQRGYQVADLSVVYPIARGTGPLLSTMGAFTLLSEPATTTGIAGMLCVVGGVLLIATQGRLGMFRQAQAWIGVRWGVVIGLFIAAYTVVDAYGVKILLIMPVLFDWFTCATRTLMMTPHVLRRRAQYWPAMRGYWHLAIAVGVLSPLGYILVLYALRNGAPLSLVAPAREMSMMLGTLAGMFLLREKVGIGRLAGCLAILAGVVLLGSS
>CP018040.1|AUL03443.1|993241_993622_+|hypothetical-protein
MTIATTLDAATSLPTAVPGRTLGALRRLARAWAGAAVPQRKWPFPPTPPGQAQPCTPCTDSQPRSVQAVQPAQARALHAQAELSGAATQAATQVLSTKAKIIDVLLVAVWGAMIPALMWLGAAGGF
>CP018040.1|AUL03442.1|991813_993088_+|radical-SAM-protein
MASTEHSFSAGFGSPAAAPAALRGRGAVTNVPHRFQQADRVRVDDGWANPDYTAGSDAAALPSVAEALGQGGRRAIPIAVEGADASPNTCAQAPAPRTIVQAEEARKMLSRNDSPDIPFDVAANPYRGCEHGCVYCYARPTHAYLGYSPGLDFETRLVAKANAVAALRAELARPGYRASPINIGSATDAYQPIERTWRLTRGMLELLLQTRHPLTVVTKNALVERDLDLLQDLARQKLVTVFVSITTLDAAMARTLEPRASAPYRRLQTVRTLAQAGVPVGVLVAPVIPFINDESLEHILQEASAAGACYASYTVLRLPWEVKEVFETWLQAHFPDRAQRVLHRIEDLRNGRRNDTAFGSRMRGTGIWADLLRQRFALATRKLDLNRHRPELDTHRFVPPLEPGLPPARGRREARAQPGQLALF
>CP018040.1|AUL05961.1|989417_990326_+|sulfate-adenylyltransferase-small-subunit
MSAVMTRSHLDWLESEAIFILREVAAECARPALLFSGGKDSVVLLRLAEKAFRPGRFPFPLLHIDTGHNYDEVISFRDARAAELGETLLVRSVEDSIARGSVALRRETDSRNAAQAVTLLEAIEELGLDACIGGARRDEEKARAKERIFSFRDEFGQWDPKAQRPELWNLFNTRVHRGENMWVFPISNWTELDVWQYIQRERLALPSIYYSHTREVVRRKGLLVPVTRLTPPAEGETVEQLAVRFRTVGDISCTCPVASDAADPAAIIAETAVTDITERGATRMDDQTSEASMERRKREGYF
>CP018040.1|AUL03441.1|987555_988620_+|sulfate-ABC-transporter-ATP-binding-protein
MSIEVRGLSKRFGAFRALDEVSLHIETGELVALLGPSGCGKTTLLRIIAGLESADAGSVLFAGEDATEVDVRQRQVGFVFQHYALFKHMTVFENVAFGLRVRHRSQRPSEARIRAKVLDLLGLVQLDWLADRYPAQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVASVFVTHDQEEALEVTDRVVLMNAGRIEQVGSPREVWERPATPFVYGFLGDVNQLHGHATRGVWRLGEVALPAPDLPEADNQRAIAYVRPHDIDLARAGTAAPGIPVRLNHVYLAGPSAYLELARQDDQAIIEAQVPEPLFRSLGLKEGEALLAQPRRARVFAVQP
>CP018040.1|AUL03440.1|986748_987531_+|sulfate-ABC-transporter-permease-subunit-CysW
MFTEALRKGWQLYLAAIVEPDAWSAIRLTLLVAAIALPVNLVFGVAAAWAVTKFQFRGKQLLITLIDLPFSVSPVVAGMVFVLLFGSQGWFGPWLQDHDWKIVYAVPGVILATLFVTFPFIARELIPLMQAQGSEEEQAALTLGASGWQIFWRVTLPNIKWGLLYGAILCNARAMGEFGAVSVVSGQVRGLTNTMTLHVEILYNEYQFAAAFAVASLLALLALVTLAAKQVVEWRNQRLSPRQAEAPVHAGALAVRPAAA
>CP018040.1|AUL03439.1|985959_986634_+|sulfate-ABC-transporter-permease-subunit-CysT
MVASYRLTFGASLLAALVNLVFGTIVAWVLVRYRFPGKKIVDVLVDLPFALPTAVAGIALTALYSANGWLGAPLQRWFDLKVAFTPLGIVVALIFIGVPFVVRTVQPVLEDVERELEEAAASLGAGRWQTIRRVLLPALLPALLTGFALAFARAIGEYGSVVFIAGNMPMISEITPLLIISKLEQYDYAGAAAIATVMLALSFALLLVINLLQGWQTRRGGRQP
>CP018040.1|AUL03438.1|985734_985938_+|hypothetical-protein
MSLAIPSGPAPTAARRQRPGVLPGFGISMGYAVLYLSLLVLVLVLVLVLVPLAALPIKSLELGWAGF
>CP018040.1|AUL03437.1|984684_985719_+|sulfate-transporter-subunit
MPRNTAGIRGAIVALATVFSLGLPWAVQAQDKQTLLNVSYDPTRELYRAVDEAFIKEYQARAGVDLTVRQSHGGSGRQARSVIDGLDADVVTLALAYDIDAIADRGLLPQDWQKRLPRNSSPYTSTIVFLVRKGNPRQIHDWDDLVKDGVQVITPNPKTSGGARWNYLAAWAYALARNEGSEAKAREFVGQLLSHVPVLDTGARGSTTTFVERGVGDVLLAWENEAFLAREELGPDKFDIVVPSLSILAEPPVAVVDKVVDRKGTRAAAQAYLEYLYTPAAQEIIARNFYRPTDAGVAAKYASRFPKLKLVTIDDPIFGGWRKAQKDHFSDGGTFDQVYQPQRK
>CP018040.1|AUL03446.1|995437_996124_+|coenzyme-A-pyrophosphatase
MRPLFDPMAQPWETANQGLARVDERLLTPPELRSSLRPADHWRLDPLCAAEPRAPGREGSLVAAAVLIPLVMRADGVRVMLTQRAAHLHDHAGQVSFPGGRIEVSDATPVAAALREAQEETGLPVQQVEVLGSMPQYFTATGFAITPVVSLVQPDFELAPDAFEVAEVFEVPLSFLMDPANHRLYRAALPDGYVRQYYAMPWQRYFIWGATAGMLRNLYQTVREALPG
>CP018040.1|AUL03447.1|996219_997170_-|IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>CP018040.1|AUL03448.1|997274_998324_+|aldo/keto-reductase
MKYRKLGHTDLDVSLIGLGTMTWGEQNTEAQAHEQLDYALAHGINLVDAAEMYPVPPKPETQGRTESCIGSWLARTGRRHEVVLASKAAGPVRDAKRPSHIRDGKTFLDRKNLTQALDASLKRLQTDYLDLYQLHWPDRTTNTFGKLAYPWVDDAHTVPIEETLEVLQDFVRAGKVRHVGLSNETPWGVARFLQAAEKHGLPKVATIQNPYNLLNRIFEIGLAEFSHREGVGLLAYSPLAMGILSGKYLDGARPEGSRLALFTRFTRYSNPQAEAAARDYVMLARDHGLAPAQMALAWVNQRPFVSSNLMGATTLAQLKENIESVEVTLSDEVLQGIEAIHARQPNPAP
>CP018040.1|AUL05962.1|998461_999478_-|IS110-family-transposase
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG
>CP018040.1|AUL03449.1|1000985_1001558_-|chorismate--pyruvate-lyase
MTTPIPLARGWLPAAPSTLDPLRKYWLFRPGALTAGLRQLGHVRLRVLAEYPTGAPRDEADGMRIAAQSPVWVREVLMSIDGVDSVVARSLTPLRASHGVWQGMRRLLTRPLADMLYHDPGIHRSVFVCRRLAAGVPFHATAIARAPAGGPEPALWARRSAFWRAGQPLLVAECFLPAFWSLARAPVAPR
>CP018040.1|AUL03450.1|1001617_1002349_+|pseudouridylate-synthase
MEKVRISKLMSERGLCSRREADSYIERGWVRVDGVVVSELGARALPDQVITLERAAAARQTARVTILLHKPVGYVSGQAEKGYTPAVALIDARSRYAGDRAPQRFERGQLQGLAVAGRLDIDSQGLLVLTQDGRIAKKLIGEDSEVDKEYLVRVQGRLSEAGLALLNHGLSLDGKPLRPAQVRWQNADQLRFVLREGKKRQIRRMCELVGLRVVGLKRVRIGRVSLGDLPAGQWRYLRADERF
>CP018040.1|AUL05963.1|1002400_1003318_-|LysR-family-transcriptional-regulator
MELFVEVARTLSFGRAAENLAIPKSTLSRQVAELERSVGLRLLSRTTRRVELTEAGQLYFERCQRIVAEARIAHEELQNLVETPSGPLRVNMPADFGTDFLSEAFTEFSRRYPEVTFYLDLASPEHAERVFQTCDVSIEIGDLPDSTHIARLLGVLPAHLYASPDYLARHGEPQHPDDLPRHECIQFRAGTGRVTRWPLNSGERHVEITPGNRFSVNSVSMVRNLATLGAGIAILAPMGNVREDIESGRLKRILPDWLAGPFPVYAVTDTRMLPAKTRIFVEFLMERLSNKTLAGQNNPAFLNLR
>CP018040.1|AUL03451.1|1004125_1007305_+|multidrug-efflux-RND-transporter-permease
MAKFFIDRPVFAWVIAIVLMMAGALSILSLPVAQYPNIAPPAISINVTYPGASAQTVQDTVVQVIEQQMNGIDNLQYISSESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAVAQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVASYIQDPISRTPGVGNFQLFGAPYAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQPAVRGQQLNATVIGPSRLQTPEAFGRILLKVNRDGSQVRLKDVASIELGAQTYAIDSYYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPGMDVVYPYDTTPFVSLSIEGVVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMGQITGALIGIAMVLAAVFVPMAFFGGSTGVIYRQFSITIVSSMVLSVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGWFNRTFERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPTAFLPDEDQGILFAQVQAPAGATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNERKGAEHRAAAVAARANAKFRAELRDAQAAVFAPPAVMELGNATGFDFQLQDRAGVGHEKLLAARNQLLQEAGASPMLVAVRPNGIEDAPQYQLDIDREKARALGVSITEINNTLATAWGSSYVNDFIDRGRVKKVFVQGEASSRMLPQDLDKWYVRNNAGDMVPFSAFSSAQWTFGPQKLNRYNGVPSYNIQGQAAPGYSSGDAMAEMERLADKLPLGIGYDWTGLSFEERLSGAQAPALYAISLIVVFLCLAALYESWSIPTAVMLVVPLGVVGALLATMTRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKEHYEEGASLTEAAVHAARQRLRPILMTSLAFILGVVPLAISTGAGSGSQNAIGTGVIGGMLTGTFLAIFFVPLFFVLTLRLFKVKRASENREDDDPHGGAQPATHGGQPQ
>CP018040.1|AUL03452.1|1007301_1008684_+|multidrug-transporter
MKPVVMRTLLSLAVATALAGCSLAPTYERPQAPVDAAYPSGPAYGAPGQAAAGAPAAADVGWRDFFGDPLLQELLALSLANNRDLRVAALNVEAARLNPSGQAGISRSYQVGASLSTWELDLFGRIRSLSEQALQLYLAQDETRLATQLTLVAETANAYLTLRADQELLALTRQTLAAQQESYKLTRQSYDLGVATELDLSQAEISLRTAERNLSQYTRMAAQDRNALVLLVGQPLPAGIGAQLDQAVALPDGVVLADLPAGLPSDLLARRPDIRAAEHQLQAANASIGAARAAFFPRISLTGSAGTASASLGGLFDAGSGAWSFAPQISVPIFAGGALRASLDLAKIQKDIGIARYEQAIQSGFREVSDALAGRGTLQEQIRSQELLVQANQRAYDLSQQRYQQGIDNYLSVLDSQRSLYTAQQTLVETRLARLSNLIQLYKALGGGWSERTVAAAQAG
>CP018040.1|AUL03453.1|1008753_1009005_-|hypothetical-protein
MNIIIMIIVGFVVGLITRAIMPGDQNMGYIMTTILGIIGSVVAGFLGQQLGWYAPGEPAGWIGSVVGAIIVLFVVGLVAKKRA

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Crispr_ID: CP018040_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP018040_4

1146759-1146892

Orphan

Consensus_repeat	Method
CCCCCTTGGGGGCAGCAAGCCCGCACAGCGGGCGCAGCGTGGGGGCCTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP018040_4

>merge|CP018040|4|1146759-1146892|CRISPRCasFinder
CCCCCTTGGGGGCAGCAAGCCCGCACAGCGGGCGCAGCGTGGGGGCCTTTTTTTGCCGCCGGGCCGCCCCAAGGCAAAAAAGCCCCCTTGGGGGGCAGCAAGCCCGCACAGCGGGCGCAGCGTGGGGGCCTTTT

>CP018040|4|4|1146759-1146892|CRISPRCasFinder
CCCCCTTGGGGGCAGCAAGCCCGCACAGCGGGCGCAGCGTGGGGGCCTTTT	TTTGCCGCCGGGCCGCCCCAAGGCAAAAAAGC
CCCCTTGGGGGGCAGCAAGCCCGCACAGCGGGCGCAGCGTGGGGGCCTTTT

Protein	Signature genes	Signature genes Name	Protein_function
CP018040.1\|AUL03545.1\|1135610_1136366_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|180796
CP018040.1\|AUL05976.1\|1140319_1141552_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274034
CP018040.1\|AUL03549.1\|1142273_1143101_+\|DNAase	unknown	unknown	gnl\|CDD\|238635
CP018040.1\|AUL03558.1\|1159366_1161649_-\|NADP-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|235976
CP018040.1\|AUL03552.1\|1147379_1151273_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378762
CP018040.1\|AUL03548.1\|1141544_1142240_+\|lipoprotein-releasing-system,-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
CP018040.1\|AUL03547.1\|1139284_1140226_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226706
CP018040.1\|AUL03557.1\|1158569_1159193_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|339870
CP018040.1\|AUL05975.1\|1137602_1139303_-\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
CP018040.1\|AUL03543.1\|1133110_1133743_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380061
CP018040.1\|AUL03546.1\|1136395_1137328_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP018040.1\|AUL03561.1\|1165149_1167012_+\|oligopeptide-transporter,-OPT-family	unknown	unknown	gnl\|CDD\|224216
CP018040.1\|AUL03554.1\|1156006_1156852_+\|phosphatase	unknown	unknown	gnl\|CDD\|223686
CP018040.1\|AUL03560.1\|1164625_1165114_+\|ArsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP018040.1\|AUL03556.1\|1157520_1158423_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
CP018040.1\|AUL03544.1\|1133739_1134042_-\|hypothetical-protein	unknown	unknown	unknown
CP018040.1\|AUL03553.1\|1154968_1155937_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP018040.1\|AUL03550.1\|1143382_1146613_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|377133
CP018040.1\|AUL03555.1\|1156919_1157474_+\|transcription-elongation-factor-GreB	unknown	unknown	gnl\|CDD\|179345
CP018040.1\|AUL03559.1\|1161803_1164500_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|237267

Protein	Function_ID	Function_description	E-value
CP018040.1\|AUL03545.1\|1135610_1136366_-\|short-chain-dehydrogenase	gnl\|CDD\|180796	PRK07023, PRK07023, SDR family oxidoreductase.	5.47641e-103
CP018040.1\|AUL05976.1\|1140319_1141552_+\|ABC-transporter-permease	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	2.30712e-155
CP018040.1\|AUL03549.1\|1142273_1143101_+\|DNAase	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	1.42767e-89
CP018040.1\|AUL03558.1\|1159366_1161649_-\|NADP-dependent-malic-enzyme	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
CP018040.1\|AUL03552.1\|1147379_1151273_+\|hypothetical-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	7.28067e-85
CP018040.1\|AUL03548.1\|1141544_1142240_+\|lipoprotein-releasing-system,-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.7791e-114
CP018040.1\|AUL03547.1\|1139284_1140226_-\|hypothetical-protein	gnl\|CDD\|226706	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown].	1.27171e-20
CP018040.1\|AUL03557.1\|1158569_1159193_-\|fimbrial-protein	gnl\|CDD\|339870	pfam16970, FimA, Type-1 fimbrial protein, A. FimA is a family of Gram-negative fimbrial component A proteins that form part of the pili. There are usually up to 1000 copies of this subunit in one pilus that form a helically wound rod onto which the tip fibrillum (FimF.FimG, FimH) is attached. Pilus subunits are translocated from the cytoplasm to the periplasm via the general secretory pathway SecYEG.	7.5249e-22
CP018040.1\|AUL05975.1\|1137602_1139303_-\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
CP018040.1\|AUL03543.1\|1133110_1133743_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|380061	pfam17932, TetR_C_24, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in family members such as HTH-type transcriptional repressor KstR2 as well as fatty acid metabolism regulator proteins. In Mycobacterium smegmatis, KstR2 is involved in involved in cholesterol catabolism, while YsiA in Bacillus subtilis is involved in fatty acid degradation.	1.55004e-17
CP018040.1\|AUL03546.1\|1136395_1137328_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP018040.1\|AUL03561.1\|1165149_1167012_+\|oligopeptide-transporter,-OPT-family	gnl\|CDD\|224216	COG1297, COG1297, Predicted membrane protein [Function unknown].	0
CP018040.1\|AUL03554.1\|1156006_1156852_+\|phosphatase	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	1.79612e-72
CP018040.1\|AUL03560.1\|1164625_1165114_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.95114e-53
CP018040.1\|AUL03556.1\|1157520_1158423_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	4.61646e-23
CP018040.1\|AUL03553.1\|1154968_1155937_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.0858e-13
CP018040.1\|AUL03550.1\|1143382_1146613_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|377133	pfam03797, Autotransporter, Autotransporter beta-domain. Secretion of protein products occurs by a number of different pathways in bacteria. One of these pathways known as the type V pathway was first described for the IgA1 protease. The protein component that mediates secretion through the outer membrane is contained within the secreted protein itself, hence the proteins secreted in this way are called autotransporters. This family corresponds to the presumed integral membrane beta-barrel domain that transports the protein. This domain is found at the C-terminus of the proteins it occurs in. The N-terminus contains the variable passenger domain that is translocated across the membrane. Once the passenger domain is exported it is cleaved auto-catalytically in some proteins, in others a different protease is used and in some cases no cleavage occurs.	3.21051e-45
CP018040.1\|AUL03555.1\|1156919_1157474_+\|transcription-elongation-factor-GreB	gnl\|CDD\|179345	PRK01885, greB, transcription elongation factor GreB; Reviewed.	4.04513e-99
CP018040.1\|AUL03559.1\|1161803_1164500_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|237267	PRK13012, PRK13012, 2-oxoacid dehydrogenase subunit E1; Provisional.	0

>CP018040.1|AUL03550.1|1143382_1146613_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MAQASARGMGLRITSLAAALLGVYGAAGAAENRLECIGACPPGQPVAGAHYSGTNLSANREWVVYGEGSNAVFTLQGGSVTASGGLMGAVNAADGARVYLNQVSVRTDAGNGWEAPGVRAEYGALVNVRGGSIATVGGGSYGVQSLDSGTMIELNGTDIRTTDAYSDGLRAEFGGSIRAVGLTINTTGEHAVGAMGADDGTIALRDSRITTSGVDAYGLGTESQVLSPGGVLQVSNTAIQTSGKNAHGVYLQGGSSLNMSGGSIRTTGSGAAGLRVSNGSSVALNGVEVVASGPSLLSTLSATRQQSIVVGAGSNLTRNDGRLLLVRRVAGGELGQVTLTLKSGSYAAGNIENLAADGSRESSALTIVDVQSGAQWAGLVIDDTTAIVNGSQSGQHSGFSTAGDMVLEGGSAPVTFTGVSNIGGSSSLGAGSQTTFGGATTIGQSLAVLPGGSVAFNGPLTIGESVTEGQGTALSFNAPAIIGANVQGAGGAAFTFSGPAQVGGSVQGLDGASFRFSTSAPTAIAGGLSLAGGSSLGGGSPTTPIVVIGGADAVSGAILGGNLDIGGALRMTGASLAPGNSIGTVTVGSVGALSGSTYLAEVNAKGQSDLLVVRSGNVDLAGVSLVVGQENGTGGYVLNHDYTIIKTEAGKIVGEFAAASLDESLASTLVKLDPVKYGAQATQVSLSPDADKLAAARAGLIRNQSAVLDGALSVAGRNASADAVMLMSDTGQRADALDQLSGEVHGSAVSALYSNTQLLNRTVARRMSANLGAGLLAGAPTAQAAGPAAASAMPGTAAYPLWADVVDNWSSFDAKDNAAKAKSNTAGLFIGGDAAVGAGWRVGGALGFTDGRIKADAVDSRSDVTSYTAALYGGNSWAAGKGKLNFLAGVGYTHHDIDSRRSVDVGGAQTLKADYKANTTQLFAELGYQVPVGASSSVEPYAGLAWFNNHSDSFDEDGGPAALHGSGQTDQITTFTLGLRGNTALQLGATETRLSAGLGWRHANGDVDATRKLAFIQGGGTAFTVAGSPVAREAAVLDLAAEVDVGRNAALGLAYGGQFGNGNKENTGSLYLKVRF
>CP018040.1|AUL03549.1|1142273_1143101_+|DNAase
MLIDTHCHLDAAEFDADRMAVARAAREAGVQAIVIPAVERANFATVRQLAHAVDSGAYALGIHPLYVARARDEDLDSLRRAIESALPDPRFVAIGEIGLDFFVAEIASGAPRERQERFYAAQLDLAAEYGLPVLLHVRRSQDILLKHLRRRPGVPGGIAHAFNGSAQQAGAFVEQGFALGLGGAMTYPRALQIRRHAADIGLDHLVLETDAPDIPPAWLYEPERRNTPGQLPRIAAELAALRGQAVADVARATTTTALRVLPRLGALLQDRAATP
>CP018040.1|AUL03548.1|1141544_1142240_+|lipoprotein-releasing-system,-ATP-binding-protein
MTEPNDTGPALQAEHLGKVYDEGPARIEVLSDVSLSVARGEMVAIVGASGSGKSTLLHILGLLDVPSSGTVSVDGVPAAGLSEKRKSALRNRSLGFVYQFHHLLPEFSALDNVAMPLIVRRENRDRARAQAREVLELVGLAAREEHFPGQLSGGERQRVALARALVTRPACVLADEPTGNLDRHTAHNMFELLTRVNRESGTAFVIVTHDPELAARADRQLHMENGRLQPD
>CP018040.1|AUL05976.1|1140319_1141552_+|ABC-transporter-permease
MARIRQRRGCRDRFISFIAATSMAGIALGVAALIVVLSVMNGFQKEVRDRMLSVLPHIELYIPGAAPERVLQQWRQFAQAARANPEVKGEAPFVAAQGMLVRGQALRGVQVRGIDPATEGNVSDIPRQMVSGKLSDLVAGGFGAVLGSDLADGLGVKTGDTVLMLAPQGSISPAGFAPRMRQFTVVGIFSSGHYEYDSTLVFIDDEDAAKVFRESGTAGVRLRVADMQRAPEVAAELTKVLPPYVMAADWSRNNRTWFAAVQTEKRMMFLILALIVAVAAFNLLSSLVMAVKDKQSDIAILRTLGAGPGEVARIFLVQGALIGVVGTLLGVAGGIAIAYNVDVIVPFIERLLGVQFLPREVYFISALPSDPQADDIITIGLTSLVLSLLATLYPSWRASRLQPAQVLRHD
>CP018040.1|AUL03547.1|1139284_1140226_-|hypothetical-protein
MLIVIPGALPAAAVAPELARLLPQHAPTLHGWLQAASARVQAFDAARQGCTPFEGWQLEQAGYQPQPGLPLGAGLGPLRAAGGTPGQPVWLADLAHLMLGADQAALLDPALLDLRADESAQLFEAAAPLFADSGFGATPIDAARWRLTLPAGMAPQTASPAAVAGQRLRAWWTQDVAMRPWRRLLNEIQMVWYEHPVNEARAARGAAPINALWLYGGATPWPAGAPAPARVCDELAATQRAGDWAAWLDALAMLDAAQLAPLAGPHGRPVQPLQLLLLGDDRRAALTLKPRAGLARWLPAPKHNWNAWWSRPV
>CP018040.1|AUL05975.1|1137602_1139303_-|single-stranded-DNA-specific-exonuclease-RecJ
MVSPRLIIRTADLQACQHLEAAGIHPLLSRLWAARGVIHPEQTRMAWPALLPPDRLTHSAHAAAVLADAIEQGKRLLIVADYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRHRRGKPDIIITVDNGIASVDGVAAANAAGIGVVITDHHLPGDTLPEALAIVNPNQPGCGFGSKHLAGVGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVVKLDANNRLLVTQGLQRMRAGRMQPGVRALFAVAGREPRTASGFDLGFALGPRINAAGRLADMSLGIACLTTDDEAQTLEMARELDNINRERRTIEAEMRDQALAAMEAPDAAAGATVCVFDPGWHQGVVGLVASRLKEKFWRPTLAFAPAGEDELRGSGRSIPDVHLRDALDLVSKRHPGLIRKFGGHAMAAGLTLGSGDFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEVAGLLQQQVWGAGFAAPLFLDEFTVRSQRLVGGKHLKLALERGHQRFDAIWFGHDQSLPERIQAAYRLEQNIWNGMVSVQLVIEHAA
>CP018040.1|AUL03546.1|1136395_1137328_-|peptide-chain-release-factor-2
MGREKKSLEDVVETLTELGSGLADSCELVELALADSDDATLEAIEHDADRFQEKLETLEFRRMFANPADPLNCFVDIQAGAGGTEAQDWASMLLRQYLKYAERKGFKAEILEESEGDVAGLKSATIKIEGEYAFGYLRTETGVHRLVRKSPFDSSGGRHTSFASVFVYPEVDESFEVEVNPADLRIDTYRASGAGGQHINKTDSAVRITHAPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMRNRMTEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQGV
>CP018040.1|AUL03545.1|1135610_1136366_-|short-chain-dehydrogenase
MTDTVAILTGASRGLGAALARGLLAPGTRLITLARRADPDLEAAARTRGASLEQVQVDLSDPAAAGAAAKRLCAALPRDARRYLLINNAGTVSPVAQAAGLTDGAAIAGALNLNVTAVVLLTARFVAALQGLPADRRVLNISSGAGRNPNAGWGVYCAAKAALDMYSRVLKQEQGQDGVRVVALAPGIVDTDMQGAIRASDPADFPALERFREFHATGKLSAPADVAARILAYLDRDDFGTTEIDDIRNYQ
>CP018040.1|AUL03544.1|1133739_1134042_-|hypothetical-protein
MAALAYLLLSRRARPAAAPRPLRALPAGRRRMPLYLGVAAVLALAGALLSAFLLVTAMAGGSGGGYRGQADFLQQVAIVLLAIGVVCAIAALVSFFRQRG
>CP018040.1|AUL03543.1|1133110_1133743_+|TetR-family-transcriptional-regulator
MHASSRGTEEAAGSPRRADVIATAGELFRLHGYERTTVRELARAVGLQSGSLFHHFRSKEEILVAVMSEGIEEVLEQGALALAHYQDPGARLAALFRVHMWSMLKGAGGDAMNALVYEWRSLSPAARGGVKALSDRYEDMWQDAVDDALRAGLVDGDARVIKRYLLGGLNLTVQWYRPQGRLAPGDFIEAMLRAALPGLPPGTGAWPLRD
>CP018040.1|AUL03552.1|1147379_1151273_+|hypothetical-protein
MVRGAWVVAGEWARAGRKSSSPRRQNRQRARRGVAAMVGGSILAQALLPLSALAQGAPTLRPARVAQEEAGQDAAWTRKLAAQAESLARRQAERQPGARVDGDYLKREAQAQVNDVLRDGVNLARESGLPFLRNLQGGLSHDFESGRTSLQLNTIDEVYRAGRNTGLLQLGAHNQNDRPTANAGAVYRREVNDALMVGANGFLDYEFGKQHLRGSVGLEVIAPEFSLYGNVYAPLSDWKGAKRNNRREEKPASGMDVGVGYRPAFAPGLSLSATHFRWNGAEVDYFDNGRTQAGAKGFKVGVEYRPVSLVSVGLEQTKVIGGGRETRMQLGLNINLSEPLSKQLRRDASGTPAFSPDARRHALVERENRIVLNTRRKEIILPLVVSKVSTLQADGRVTVIGATQPFATVTVRMPDGMTGTATADASGRFAYTSAGDQPSGVLALRARNAEGDSSREVTYRYVDEVVLGDLQVAVMALVPLPADRALEVRGKTEPKVDVKVSFSNGESVLAKADAKGLFTVRSTRKVTQGKVLVQATHPQTRKEARAVADYLPPATLAPTIDAVTAQADTGRVTVTGQAEPGAQVDVHFPDGTAKTVDAGADGAYAATSDGDMVSGDIHAQATDKAGNQSPEATRHYGDTTDITPPAAPTIANVATDATSGRVTAAGMAEPGANVTVNFPDGTRKTVVAGGDGAYTATSDRDMVSGDIRVQATDKAGNQSPEATRAYADAVDRTAPEVPTVTHVATDAKSGRITVTGMAEPGANVTVNFPDGTRKTAVAGGDGAYTATSDGDMVSGDIRVQATDKAGNRSPEATRAYADTVDTTPPAVPTITDVTTDATNGRITVTGVAEPGANVTVDFPDGTRKTVVAGGDGAYTATSDRDMASGDVRVQAIDKGGNRSPEATRAYADTVDKTAPAAPTITNVTTDAASGRITVTGMAEPGANVAVNFPDGTRKTVVADGAGAYAADSDGDMVAGDIHVQATDKAGNRSPEGTRAYVDTVDKTPSAAPTIVRVTTDRSSGVVTVAGTADPDNDVTVQFPDGGRKTVKAGKDGSYSVTSDNDIFSGIIQVSARNPAGNASPEVRQDYRDEFVPANAITNIETNSRNGIVTVSGKTSPDATVVVSFPGGDEARTRAKGDGTFSVSSPMDIPRGVVSLSTEVNGVQTVVATRTYEDKFTKGGLDFTAFLPYTPKFNGVSTSDTSAVLLSIPRYFYSGGAPVAKIMPPEADGSEFAKRAAAAMRAQVTPGRDSSEYDVRVSWPAGTFTPADVGQRADLAVKVFDKGTGKYMLLLAPVNFPY
>CP018040.1|AUL03553.1|1154968_1155937_+|alpha/beta-hydrolase
MGHRRPSGPRRGDIMQEPRLDFVTCASPTGFHRMAYWEWGDPLNDRVLVCVHGLTRTGRDFDHLARRLAGQWRVVCPDVAGRGKSDWLSNPALYAVPQYVSDMATLIARVWPATLAWVGTSMGGLIGLGLAGAATMMRLARAMRPRPDGLPAQADDLRLHRLVLNDVGPRLNVEVLQRIAGNVAAQDSYSTFEAAVAAMRQISTTFGPHTDAQWDELARHIYVRQGGGWVRHFDPALAVPLGAQVAQAFEAGERILWQAYDSLDCPVLIVRGQDSDLLSAATAGEMLARNPRARLHEVPGVGHAPTLMTPEQIEPIARFLQE
>CP018040.1|AUL03554.1|1156006_1156852_+|phosphatase
MNIAAPNVDLHCHSTVSDGSMPPAAVARRAHANGVDVWALTDHDEIGGVAEAAQAAAALGMRFVAGVEISVTWAGLTVHIVGLRVDPANEALVQGLRDTRAGRAARAVQIGERLAGLGMPGAYEGALPFAGNPELISRTHFARFLVEAGYCPDVQTVFNKYLGDDCPGHVPMQWASLAEAVGWIRGAGGCAVIAHPGRYKYSPMQFDALYDEFLQLGGTGIEVVTGSHTSEEARRYAEVARRHGFLASRGSDFHSPTESRVDLGRLPPLPPDLKPVWHDWF
>CP018040.1|AUL03555.1|1156919_1157474_+|transcription-elongation-factor-GreB
MNKAFVKESDRDDEDDLPEAQALPAGTRNYMTPQGYARLRDELSHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFLTKRLDIAEVVDPAAQPNRDQVFFGATVLYMDRAGEERTVTIVGVDEAEPLAGKISWISPVARALTKAHEGDTVTLRTPGGVEELEILEVRYPDA
>CP018040.1|AUL03556.1|1157520_1158423_-|IS481-family-transposase
MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLAGLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>CP018040.1|AUL03557.1|1158569_1159193_-|fimbrial-protein
MQIPFQRALRLCLRAALAAIASAAHADDGTIVITGTITDTTCVIEDPSGPNHTKVVQLPKISKNALKANGDQAGRTPFIIKLKDCPSSLGNGVKAYFEPGPTTDYSTGDLRAYKMVYATNPQTQLSNITAATEAQGVQVRISNLNDSKITMGANEATQQAAGFDPEVQTGGTSRTVTMRYLASYVKKNGDVEASAITTYVGFSVVYP
>CP018040.1|AUL03558.1|1159366_1161649_-|NADP-dependent-malic-enzyme
MDENLTKLALDYHAYPTPGKISVTPTKTLANQDDLSLAYSPGVAAACMAIFDQGNDAASKYTSRSNLVGVITNGTAVLGLGNIGSLAAKPVMEGKGCLFKKFAGIDVFDIELAENDPDKLVDIIAALEPTLGGVNLEDIKAPECFYIEKKLRERMNIPVFHDDQHGTAIISSAAILNGLKVVGKDIGQVKLACSGAGAAAIACLDLLVHLGIKREHIYVVDSRGVIWEGRDENMEPNKRRYAQKTEARTLADVVNGADVFLGCSTAGVLTPEMVKTMAAQPLILALANPEPEIRPELAKAARPDCIVATGRSDYPNQVNNVLCFPFIFRGALDAGATRITEEMKLACVKAIAELAQAEQNDEVARAYAGQELSFGPDYIIPKPFDPRLIVQIAPAVAQAAADSGVATRPIEDIEAYRQKLMGFVYHSGQLMRPLFQQAKQAPKRVVYADGEDERVLRAVQTVIDEKLAEPILVGRPSVIEMRIKKFGLRMVPGQNVEIVDPEDDSRFNDTWNGYYQLRGREGVTPAIAKAMIRKHNTLIGAMLLRRGDADALLCGVASKYDNQLKYVEEVIGRKPGQTYGALNVLMLPNQTLFVTDTHVNENPSADEIANITIQAAEEMLRFGVMPKIALLSHSNFGSRPTDSSRKMAHARKLVAERAPHLEVDGEMHADAALSESIRLQAYPDSTLKGRANLLVMPNLDTGNITYNMLKMTGSNGIAMGPILLGSARPVHILTTSATVRRIVNMTALAVVDAQQEAAEG
>CP018040.1|AUL03559.1|1161803_1164500_-|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MCNAQAGATPPQIPDPDPVETAEWCEALDSLTQAGGPERAAYVLQQLLARATALGVRAPGITRTAYLNTIAADQEPPFPGNLSLEERIASINRWNALAMVVRANQAHGELGGHIASYASAADLFEVGFNHFFRAPAPGFGGDLVYMQPHSAPGIYARAYLEGFLNDVDLAHFRQEITAGAQGLRGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLEHRSLAMPSDRKVWGIFGDGEMDEPESIAALTLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELETLYAGAGWNVIKLVWGGDWDALLRRDPDGVLAGTFSHTVDGQFQTFAANDGAYNRQHFFGQDPRLSALVADWSDEAIDRLRRGGHDMVKIHAAYHRATHHRGQPTVILAQTKKGFGMGTAGQGKMTTHQQKKLDDEALLAFRDRFALPISDADCLALKFYKPAEDSAELRYLESRRAALGGYLPRRRTEAPRLAPPPVADWARFALQAAGKEMSSTMAIVRMLTALLKDPQLGPRIVPIVADEARTFGMANLFRQVGIYSAQGQLYEPEDIGSVLAYREARDGQILEEGITEAGAISSWTAAGTSYSVNGLPMLPFYIYYSMFGFQRIGDLIWAAADQRTRGFLIGATSGRTTLGGEGLQHQDGYSHLAAAAVPNCRAYDPAYAYEVAVLVEHGMQRMLDEQCDEFYYLTVTNENLAQPDMPEGEETRTGILRGMHRVRAADATPQVRLLGAGPMLDEAMRAAQLLRDEHGLDAEVWSVTSFSELARGGRGAERAQALGLPCPDGNWLAQCLGDQATPVVAVSDYVRAVPEQIRAWVPGPYRVLGTDGFGHSDTRARLRDFFEVGAPWIVLHALDLLAREDSAWQPALQARREQLQAATRNVPSWQS
>CP018040.1|AUL03560.1|1164625_1165114_+|ArsR-family-transcriptional-regulator
MPPHALDAIDRRILDLLQTDASLTNVELARRVHLSPSPCLARVKALEAAGIIRGYVALADPAQLGLNLNVFIQVSLEKQVESELERFQGAMADCPEVMECYLMTGDADYLLRVVVADMPGLERFIVNRLSRIPGVKNIRSGFALKQVKYQTALPLRQGSGPQ
>CP018040.1|AUL03561.1|1165149_1167012_+|oligopeptide-transporter,-OPT-family
MADATRIPDSVTLPELTLRGVLLGALITVIFTASNVFLGLKVGLTFSSAIPAAVISMSVLRMFRDANILENNMVQTQASAAGTLSAIIFILPALVMMGHWQGFPFWQTLAICGAGGMLGVMFTIPLRHIMVVQSDLPYPEGVAAAEILRVGSAEAPDTAPGRRGASGMGDILAGGGVAALVSLATGGLRVLGDSFSWWGQLGASVFRLPMGFSLALLGAGYLIGIVAGVAMLVGLLIAWLVAVPVLTATTPMPDGQSISAFANSLWASQVRFIGAGVIGVGAIWTLATLFMPMVRGVRTSFAAFGRSGEAAYGSAPRTERDLPSRWISLITLALVAVLVGVFAAFLQPAVLSPGARWGLVAYAVVFAFVFGFLVAAACGYMAGLIGSSTSPISGVGIVAIVLVSLLMLAIQRGDGLLATPQGLQMGIALAIFTTSAVVAVASISNDNLQDLKTGWLVGATPWRQQVALLIGCVVGAAVISPVLELLYNAYGFGDALPRPGMDPSQALAAPQATLMLAIAQGIFTHQLNWTMILIGMGVGVALIVIDQVLRRTCRVARLPVLAVGIGIYLPPSASAPIVVGAVLAWLLEGARCAAGPPPPGRTTSAMPKGPIAAACWWRPA

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Crispr_ID: CP018040_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP018040_5

1820725-1820850

Orphan

Consensus_repeat	Method
AAAAAGCCCCCTCGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP018040_5

>merge|CP018040|5|1820725-1820850|CRISPRCasFinder
AAAAAGCCCCCTCGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCGTGGGGGCACTACTTTGCCGCTGGGCCGCCCCAAGGCAAAAAGCCCCCTCGGGGGCAGCAAGCCCGCGTAGCGGGCGCAGCG

>CP018040|5|5|1820725-1820850|CRISPRCasFinder
AAAAAGCCCCCTCGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCG	TGGGGGCACTACTTTGCCGCTGGGCCGCCCCAAGGC
AAAAAGCCCCCTCGGGGGCAGCAAGCCCGCGTAGCGGGCGCAGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP018040.1\|AUL04065.1\|1817514_1818000_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
CP018040.1\|AUL04072.1\|1825927_1826440_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927
CP018040.1\|AUL04075.1\|1828118_1828442_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|213674
CP018040.1\|AUL04068.1\|1819719_1820649_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|273608
CP018040.1\|AUL04076.1\|1828444_1828957_+\|Fe-S-protein-assembly-co-chaperone-HscB	unknown	unknown	gnl\|CDD\|235133
CP018040.1\|AUL04071.1\|1825220_1825712_+\|protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|319971
CP018040.1\|AUL04067.1\|1819314_1819674_-\|hypothetical-protein	unknown	unknown	unknown
CP018040.1\|AUL04078.1\|1830958_1831300_+\|ferredoxin,-2Fe-2S-type,-ISC-system	unknown	unknown	gnl\|CDD\|131062
CP018040.1\|AUL04066.1\|1818415_1819318_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
CP018040.1\|AUL04062.1\|1812628_1814734_-\|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB	unknown	unknown	gnl\|CDD\|274867
CP018040.1\|AUL04073.1\|1826457_1827669_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
CP018040.1\|AUL04064.1\|1816933_1817170_+\|hypothetical-protein	unknown	unknown	unknown
CP018040.1\|AUL04070.1\|1821652_1822855_-\|aromatic-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|181731
CP018040.1\|AUL04063.1\|1814739_1816725_-\|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA	unknown	unknown	gnl\|CDD\|274868
CP018040.1\|AUL04061.1\|1811365_1812625_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	unknown	unknown	gnl\|CDD\|236882
CP018040.1\|AUL04074.1\|1827706_1828117_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
CP018040.1\|AUL04059.1\|1809629_1810742_+\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
CP018040.1\|AUL04077.1\|1829086_1830949_+\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|235360
CP018040.1\|AUL04060.1\|1810746_1811385_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372868
CP018040.1\|AUL04069.1\|1820873_1821524_-\|repressor-LexA	unknown	unknown	gnl\|CDD\|234688

Protein	Function_ID	Function_description	E-value
CP018040.1\|AUL04065.1\|1817514_1818000_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	7.77331e-19
CP018040.1\|AUL04075.1\|1828118_1828442_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.04388e-54
CP018040.1\|AUL04068.1\|1819719_1820649_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	4.98806e-78
CP018040.1\|AUL04076.1\|1828444_1828957_+\|Fe-S-protein-assembly-co-chaperone-HscB	gnl\|CDD\|235133	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB.	2.55481e-79
CP018040.1\|AUL04072.1\|1825927_1826440_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	1.00126e-77
CP018040.1\|AUL04078.1\|1830958_1831300_+\|ferredoxin,-2Fe-2S-type,-ISC-system	gnl\|CDD\|131062	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.92271e-56
CP018040.1\|AUL04066.1\|1818415_1819318_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.13866e-23
CP018040.1\|AUL04062.1\|1812628_1814734_-\|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB	gnl\|CDD\|274867	TIGR03938, hypothetical_protein_Pcar_2791, poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB. Two well-characterized systems produce polysaccharide based on N-acetyl-D-glucosamine in straight chains with beta-1,6 linkages. These are encoded by the icaADBC operon in Staphylococcus species, where the system is designated polysaccharide intercellular adhesin (PIA), and the pgaABCD operon in Gram-negative bacteria such as E. coli. Both systems include a putative polysaccharide deacetylase. The PgaB protein, described here, contains an additional domain lacking from its Gram-positive counterpart IcaB (TIGR03933). Deacetylation by this protein appears necessary to allow export through the porin PgaA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
CP018040.1\|AUL04073.1\|1826457_1827669_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
CP018040.1\|AUL04071.1\|1825220_1825712_+\|protein-tyrosine-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	1.04407e-74
CP018040.1\|AUL04061.1\|1811365_1812625_-\|poly-beta-1,6-N-acetyl-D-glucosamine-synthase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	0
CP018040.1\|AUL04063.1\|1814739_1816725_-\|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA	gnl\|CDD\|274868	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA. Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats.	1.10027e-119
CP018040.1\|AUL04070.1\|1821652_1822855_-\|aromatic-amino-acid-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
CP018040.1\|AUL04074.1\|1827706_1828117_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	5.84746e-99
CP018040.1\|AUL04059.1\|1809629_1810742_+\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	0
CP018040.1\|AUL04077.1\|1829086_1830949_+\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0
CP018040.1\|AUL04060.1\|1810746_1811385_-\|hypothetical-protein	gnl\|CDD\|372868	pfam13994, PgaD, PgaD-like protein. This family includes the PgaD protein from E. coli. The homopolymer poly-beta-1,6-N-acetyl-D-glucosamine (beta-1,6-GlcNAc; PGA) serves as an adhesin for the maintenance of biofilm structural stability in eubacteria. The pgaABCD operon is required for its synthesis and export. It has been shown that PgaD is essential for this process.	0.00341018
CP018040.1\|AUL04069.1\|1820873_1821524_-\|repressor-LexA	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.25833e-105

>CP018040.1|AUL04068.1|1819719_1820649_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MPRSGILTAPVLAVLGTASAPQGIWQAEMNALSKRMGELRLTPAAGGVWARSFAQRQRLDNQVVDRFTQTVGGIEIGADTALPAAEGRWHVGAVAGYSRARRKLAHSARGNSDSLHVGAYATYIGDGGFYLDGIVRVNRYEHDFRADGQRGARVTGKYRANGIGLSLETGRRFTWAGDWFVEPQVEVALFRSGGADYTASNGVRVDVASTKSLLGRAGLQVGRKLDLGNGKLVQPYAKLSWLQEFDGVGKVRTNDIGHDVKLRGGRAELDLGVAAALGRHSSLFASYEYSKGSRLTIPWSFHVGYRYAW
>CP018040.1|AUL04067.1|1819314_1819674_-|hypothetical-protein
MRLVLRPGSRLGARLPLRTRFRLRSGFHPRPGFHLSSGLCIGLGIGIGRGQALRPLLGRVGPRLRRLFGRRRQPAVLAIDGSAVQLGTRNIDVGPAIVDGRAIEIYRCPAVFIVDGPAI
>CP018040.1|AUL04066.1|1818415_1819318_+|IS481-family-transposase
MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>CP018040.1|AUL04065.1|1817514_1818000_+|MarR-family-transcriptional-regulator
MPASQDKPDVPPGPYHFSEQVGHLLRRAYQRHVAIFQQTIPDSKLTAAQFVVLCALRDQGACSLVDVVKATAIDQATVRGVIERLKARKLLAVSHDPADRRKVLVTLTPDGRALVEEMVPFAEQITQSTFGGLNPAERVAIVYLLRKMSDADDLVGRQSES
>CP018040.1|AUL04064.1|1816933_1817170_+|hypothetical-protein
MRRAAKWWGPAATWTLAALLVLLVGHGVVPEAARVSDAPLLHAMAGHAYLLNWAAGLMALIGWGDSLVLYRRTRRRAV
>CP018040.1|AUL04063.1|1814739_1816725_-|poly-beta-1,6-N-acetyl-D-glucosamine-export-porin-PgaA
MNNDQTRRTRPASVRGLRRTRLLVAGLAFVGAAAAAAPSVRDQVQEASRSGAANLALDLATEHRALFTPLEYAQLQHAAIAQRLRWSRAETWNLTGPERFATLDAALADGWQLLDSLPLAPEYASLRTAVISDMIYGLGLRGRYADAIKLYEGLRATNTPVHPYVLVSAGNAYAYEERYDEAIVCYEEALAKAGPGDIDRVPTQESLFFAYMDRGRYEDAEQLLQRIEKTSPQYVENAPVAERPNEDYATAQRLRAQYLMYSGETEAGTLAIDALQHDAPFSSGLRNAAASARLGDARPREAKAAFTTALAERPDDIQAMTGLARASMALREYPEAEAIVTTLSERFPESSSVRNLQRDYEVYQSPLLTMDFGGDIGHGGDNSNNDNSTIANREWSLNTMLYTSPISHNYRLFFHQFTGYADLGDGHKSRVRNGAGLEYRRGSIEASTELHQSTGPSGRFGASANVAWLPSDGWRLAANFDSDSNDLPWKAYRAGIHGWSSGVSARYQPTERTYYDVAYQLQHYSDSNTRQTIGATWFQNLWTVPRHSVSTWTSVAYSNNSKTDTECFSPDHDLTAQVTAMYEWRPWRDGQYAFRQRVYATGGVYNQAEHGNSALWQLRLEQVWDLPRQTSITYGVGYGRHSYDGDPENRTLFYLTLNIPF
>CP018040.1|AUL04062.1|1812628_1814734_-|poly-beta-1,6-N-acetyl-D-glucosamine-N-deacetylase-PgaB
MTAMHRTLLKWFACCALGLLMLPARAYKVDMLPPPDPDDGLTFRVLCMHDVRDNLRASFADMPDQFAIETRTLTDLFEWIRVKGFNLISMQQIIDSRAGVRPLPPRPILLTFDDGYASTYTKVFPLLKKFNYPAVVAVVTSWTDAPAGTKIRLSPKIEVPHDFFMTWAQLREMAQSGLVELASHSHNLHRGVLANPQGNEQPAASSRQYLPASGRYENDAEYRARVRQDLKTSADLIREHTGVTIRSIVWPYGAHNRDTDQVAAEVGLNIGLTLQPGPNTPDVSLTQIRRSLVDYEVNVATVARAMREPVSYHGQVRPIERIVQVDLDYIYDPDPEQQNRNLGQLIDRMKDLAPSAVYLQAFAYPKGDGDITEVYFPNRHLPMRADLFNRVAWQLKTRAGVMVYAWLPVLTFSVPPGNPAYGKVVQSTTRKPGERGLGSPTRLSPFHPDAHRVISEIYEDLAKAAHFDGLLFHDDAVLDDTEDSSPEALATYQGWGLPPDIAAIRADPKLAQQWSKGKIRYLIDFTMHLRHIVSGYQNDRDMVVARNLYAQPVLDPVSEAWYGQSLPEFLKSYDFVALMAMPNMEGAARPEQWMRQLVAAVARQKGLDRTIFELQARDWRVGKPIDTEILRKQMVQLRSLGAINYGYYPDDFIANHPDAEVLRDVMSLKSTLEKRRLTKAQELSRQTTLYGSASQAEPTQR
>CP018040.1|AUL04061.1|1811365_1812625_-|poly-beta-1,6-N-acetyl-D-glucosamine-synthase
MNDSVKSVLSSFVFYYPFFMSYFWIVGGLLHFFLFEQGRKHRATLLPRVPRVAIVVPCYNEGENVAEVIAHLDRMHYPNYRIIAVNDGSRDNTGALLNELAEQYPRLLVVHQSRNEGKAIGLNTAAQLSDAEFLLCIDGDSLPHPDSITYMLTHFLHAGHVGAVTGNPRIRNRSTVLGRMQVGEFSSIVGLIKRTQQLYGKLMTVSGVMTMFRKQALHQVGYWSPDMQTEDIDISWKLQLAGWTLRYEPRALTWILMPETFRGLFKQRYRWARGGIETALKYAPRMLNPRQILMWPIFLEFSLSVLWAYAMLFLICMAVLGQFVALPPAWQFEIFPRWHGTLLFLTCLAQLFAGCIVDRAYDYRIFRYFADAVWYPIAFWIIGMITTVFALPRVLFRRAQSRARWVSPDRGIKHESVDH
>CP018040.1|AUL04060.1|1810746_1811385_-|hypothetical-protein
MKALIIDISASPLREYVHQHGVADGLLYGCWYRIVRPLLVILTWVAFSLYIHHSLVTVGGTAAQIAELLVYITVVATMAAALTAWMIVCRFHGWIRARDNEEVGVGLDPEYALPPRWPLPEGANRLLVDHDEAGAIVQVSAWYVPAAIEPVVAAAMASAVMPEAAPLSEPAPVAAALPDEADELAAWSGPPMQRQPDGRIEPTLHDGRALTL
>CP018040.1|AUL04059.1|1809629_1810742_+|alkene-reductase
MSTLFQPLNAGKLRLANRIVMAPLTRNRSPNAVPPPLTATYYAQRASAGLIITEATAISHQGQGYADVPGLYAPEQLAGWRRVTDAVHAAGGTIVVQLWHVGRISHTTLQPGQGAPVAPSAIRAQARTYLVDAQGKGQFADTSEPRALALDELPGIVEDYRRAARAAIDHGFDGVELHAANGYLLDQFLRSGSNHRDDAYGGSIENRARLLLRALDAVCAEVGADRVGIRLSPVTPANDAHDDQPQPLFEYVLRELARRGLAYVHVIEGATGGDRAYQQGPAPFDYAALKAAYRAAGGAGAWMVNNGYDISLAEQKLSSGQADLVAFGKPFIANPDLVARLRQGAALNEGDRDTFYGGGERGYTDYPALA
>CP018040.1|AUL04069.1|1820873_1821524_-|repressor-LexA
MATKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGFRSPNAAEDHLKALARKGAIELTAGASRGIRLKVPDSATPSAQLTHPLLAQLVLPLVGRVAAGSPILASEHVEREVGVDPGLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVARLGDEVTVKRLQRQNGRIELLPENPDFAPIVVANTDEFALEGIAVGLIRTQPLH
>CP018040.1|AUL04070.1|1821652_1822855_-|aromatic-amino-acid-aminotransferase
MSTLFASVELAPRDPILGLNEQYNADTRPGKVNLGVGVYYDDEGRIPLLQAVRKAEVARIEAAAARGYLPIEGIAGYNKGAQALLLGADSPLAAEGRVLTAQALGGTGALKIGADFLRQLLPQSKVLISDPSWENHRALFERAGFPVETYAYYDAATHGLNFEAMLAALQAAPEQTIVVLHACCHNPTGVDPTPQQWEQIAAVVKARNLVPFLDIAYQGFGEGLEQDAAVVRMFAELDLTMFISSSFSKSFSLYGERVGALTVVAGSKDEAARVLSQLKRVIRTNYSNPPTHGGTVVSTVLNTPELFALWENELAGMRDRIRLMRKELVEKIKTQGVAQDFSFVLAQRGMFSYSGLTAAQVDRLREEHGIYAVSSGRICVAALNSRNIDAVAAGIAAVLK
>CP018040.1|AUL04071.1|1825220_1825712_+|protein-tyrosine-phosphatase
MMTKVLFVCMGNICRSPSAEGVFRYLVNDAGMGDVVRVDSAGTHAFHIGEAPDARAQAAARKRGYDLTHCAARQVTADDFREFDLILAMDWDNLAALQQQCPKAYQHKLMLLMRFANEFEEATVPDPYYGGPEGFGKVLDYLEDACQGVLELVRKRATQYQAA
>CP018040.1|AUL04072.1|1825927_1826440_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRGPGGGYSLARLARNVTVADIIFAVDEPLDATSCGGKRDCTSGNDGKPGKCMTHELWTTLNRKMVDYLDSVSLQDLVDQQRVRQLQEAANQAQGCSAVRVNRSTPVAANATA
>CP018040.1|AUL04073.1|1826457_1827669_+|IscS-subfamily-cysteine-desulfurase
MSNRPIYLDYSATTPVDPSVVEKMIPWLYESFGNPASRSHAFGWEAEDAVEKAREEVAKLVNADPREIVWTSGATESDNLAIKGAANFYAERGKHIITVKTEHKAVLDTCRELERQGFEVTYLDVQDDGLLSLDAFKAALRPDTILVSVMMVNNEIGVIQDIAALGEICREKGIIFHVDAAQATGKVEIDLQKLKVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGFRSGTLATHQIVGMGEAFRLAREEMGTENERVRMLRDRLLAGLTQIEEVYVNGSMEHRVPHNLNISFNYVEGESLIMAIKELAVSSGSACTSASLEPSYVLRALGRNDELAHSSIRFTLGRFTTEQEIDFTIELIKSRVGKLRDMSPLWEMAQEGIDLNSVQWAAH
>CP018040.1|AUL04074.1|1827706_1828117_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSSKVLDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQIKVNEAGVIEDARFKTYGCGSAIASSSLVTEWVKGKTLDEAMNIRNTQIAEELALPPVKIHCSILAEDAIKAAVQDYKTKHGAETPEAVAAN
>CP018040.1|AUL04075.1|1828118_1828442_+|iron-sulfur-cluster-assembly-protein-IscA
MAVTLTQSAANHVGRYLQKRGKGIGLRLGVRTTGCSGMAYKLEYVDEQAADDVVFDSFGVKVFIDPKSLAYLDGTELDYAREGLNEGFRFSNPNEKATCGCGESFTV
>CP018040.1|AUL04076.1|1828444_1828957_+|Fe-S-protein-assembly-co-chaperone-HscB
MAADDHFSLFGLPTRFALDPVQLEQAWRAVAARVHPDRYATASAAERRVAMQWAARANEAYRQLRDPMLRARYLCEQAGVDLQTESNTAMDPAFLMQQMEWREMLDDARRDPAAFAALRAELEQARLRMQQTLSELIDERGDYQQAGTKVREWMFVEKLAQELSAAQPMQ
>CP018040.1|AUL04077.1|1829086_1830949_+|Fe-S-protein-assembly-chaperone-HscA
MALLQISEPGDSPAPHQRKLAVGIDLGTTNSLVAAVRSSVPEVLADAQGQVLLPSAVRYLDGGAVRIGREALLEQARDPLNTIVSVKRFMGRSAADAAASGAPYEFVDAPGMVRLRTVQGDLSPVEVSAQILAVLRQRAEDVLGDDLVGAVITVPAYFDDAQRQATRDAARLAGLNVLRLLNEPTAAAIAYGLDQAAEGIYAVYDLGGGTFDISILRLTQGVFEVIATGGDTALGGDDFDSAIVAHACAGEDVAALPVADRRALLVAARAAREALTDQAQAPFEVTLRDGRAIQATLTRAQFEQLAEPLVGRTLDSARRALRDAGLAVGDVRGVVMVGGATRMPVVRQQVGALFGTEPLTNLDPDQVVALGAALQANLLAGNRALGEDWLLLDVIPLSLGLETMGGLVERIIPRNSTIPVARAQEFTTFKDGQTAMSVHVVQGERDLVSDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLSVTAREQSTGVEAAVAVKPSYGLSDDEIARMLADSVTQADSDARARMLREQQVEARQLVESVGAALAADGDLLDPAERATVDQRLQAAAQAQSLDDVEAVRAAVQALSDATEEFAARRMDRSIRSALAGRKLDELA
>CP018040.1|AUL04078.1|1830958_1831300_+|ferredoxin,-2Fe-2S-type,-ISC-system
MPKLTVLPHPDVCPEGAVIEDAPKGVSICRVMLDNHIEIEHACELSCACTTCHVVVRQGFNSLEDATDDEEDLLDKAWGLTSTSRLSCQALIGEEDLTVEIPKYTINHAKEQH

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Crispr_ID: CP018040_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP018040_6

3432000-3432109

Orphan

Consensus_repeat	Method
TTGACTGCCAAGACGGTATCTGTCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP018040_6

>merge|CP018040|6|3432000-3432109|CRISPRCasFinder
TTGACTGCCAAGACGGTATCTGTCCCCGCAGGGAGGGTGCCTGTCCCCGCCGGGACAGGCACACTGCTGTACGCCATCGACGCTTGACGGCCAAGACGGTATCTGTCCCC

>CP018040|6|6|3432000-3432109|CRISPRCasFinder
TTGACTGCCAAGACGGTATCTGTCCCC	GCAGGGAGGGTGCCTGTCCCCGCCGGGACAGGCACACTGCTGTACGCCATCGACGC
TTGACGGCCAAGACGGTATCTGTCCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP018040.1\|AUL06130.1\|3433325_3434297_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
CP018040.1\|AUL05330.1\|3418667_3421646_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375438
CP018040.1\|AUL05347.1\|3444364_3445180_+\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
CP018040.1\|AUL05331.1\|3422572_3423451_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
CP018040.1\|AUL05341.1\|3434392_3435295_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
CP018040.1\|AUL05332.1\|3423486_3423819_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235866
CP018040.1\|AUL05334.1\|3425399_3426350_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
CP018040.1\|AUL05342.1\|3436847_3437549_+\|two-component-system-response-regulator-OmpR	unknown	unknown	gnl\|CDD\|181883
CP018040.1\|AUL05336.1\|3426856_3427627_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
CP018040.1\|AUL05345.1\|3441498_3443262_+\|glutamine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235424
CP018040.1\|AUL05333.1\|3423797_3425318_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235866
CP018040.1\|AUL05329.1\|3416279_3417368_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187652
CP018040.1\|AUL05339.1\|3432110_3432503_-\|osmotically-inducible-protein-OsmC	unknown	unknown	gnl\|CDD\|224679
CP018040.1\|AUL05338.1\|3429961_3430747_+\|enoyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|180789
CP018040.1\|AUL05340.1\|3432640_3433321_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377342
CP018040.1\|AUL05346.1\|3443373_3444252_+\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|178806
CP018040.1\|AUL05337.1\|3427647_3428448_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
CP018040.1\|AUL05343.1\|3437548_3438973_+\|ATPase	unknown	unknown	gnl\|CDD\|236531
CP018040.1\|AUL05344.1\|3440042_3441383_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
CP018040.1\|AUL05335.1\|3426346_3426814_-\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927

Protein	Function_ID	Function_description	E-value
CP018040.1\|AUL06130.1\|3433325_3434297_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	2.71001e-129
CP018040.1\|AUL05330.1\|3418667_3421646_+\|hypothetical-protein	gnl\|CDD\|375438	pfam17936, Big_6, Bacterial Ig domain. This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.	1.32844e-07
CP018040.1\|AUL05347.1\|3444364_3445180_+\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	7.6448e-163
CP018040.1\|AUL05331.1\|3422572_3423451_+\|fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	2.20669e-12
CP018040.1\|AUL05341.1\|3434392_3435295_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	4.1334e-23
CP018040.1\|AUL05332.1\|3423486_3423819_+\|hypothetical-protein	gnl\|CDD\|235866	PRK06816, PRK06816, StlD/DarB family beta-ketosynthase.	8.20524e-38
CP018040.1\|AUL05334.1\|3425399_3426350_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.05216e-23
CP018040.1\|AUL05342.1\|3436847_3437549_+\|two-component-system-response-regulator-OmpR	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	4.05363e-90
CP018040.1\|AUL05336.1\|3426856_3427627_-\|SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.0439e-10
CP018040.1\|AUL05345.1\|3441498_3443262_+\|glutamine--tRNA-ligase	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
CP018040.1\|AUL05333.1\|3423797_3425318_+\|hypothetical-protein	gnl\|CDD\|235866	PRK06816, PRK06816, StlD/DarB family beta-ketosynthase.	1.80369e-130
CP018040.1\|AUL05329.1\|3416279_3417368_+\|hypothetical-protein	gnl\|CDD\|187652	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs. 5beta-POR catalyzes the reduction of progesterone to 5beta-pregnane-3,20-dione in Digitalis plants. This subgroup of atypical-extended SDRs, shares the structure of an extended SDR, but has a different glycine-rich nucleotide binding motif (GXXGXXG) and lacks the YXXXK active site motif of classical and extended SDRs. Tyr-179 and Lys 147 are present in the active site, but not in the usual SDR configuration. Given these differences, it has been proposed that this subfamily represents a new SDR class. Other atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.76863e-97
CP018040.1\|AUL05339.1\|3432110_3432503_-\|osmotically-inducible-protein-OsmC	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	4.86152e-16
CP018040.1\|AUL05338.1\|3429961_3430747_+\|enoyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|180789	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI.	1.22848e-177
CP018040.1\|AUL05340.1\|3432640_3433321_+\|hypothetical-protein	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	5.6465e-62
CP018040.1\|AUL05346.1\|3443373_3444252_+\|septum-site-determining-protein-MinC	gnl\|CDD\|178806	PRK00030, minC, septum site-determining protein MinC.	3.47756e-166
CP018040.1\|AUL05337.1\|3427647_3428448_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	2.85848e-146
CP018040.1\|AUL05343.1\|3437548_3438973_+\|ATPase	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	3.78414e-42
CP018040.1\|AUL05344.1\|3440042_3441383_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.21087e-123
CP018040.1\|AUL05335.1\|3426346_3426814_-\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	4.07937e-102

>CP018040.1|AUL05338.1|3429961_3430747_+|enoyl-[acyl-carrier-protein]-reductase
MGFLAGKRILMTGVLSNRSIAYGIARACRDQGADLAFTYVGDRFKERITEFAASFGSDIVLPCDVAEDSQIDAAFAELGKRWDGLDGLVHAIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPAMAKAALPLMEGRKGSVLTLSYLGSERVVANYNTMGLAKASLEASVRYLATALGPRGIRANAISAGPIKTLAASGIKDFSSILKFVEANAPLRRNVTIEDVGNVAAFMLSDLAAGITGEITHVDAGFSTVVPGMEN
>CP018040.1|AUL05337.1|3427647_3428448_+|hydroxyacylglutathione-hydrolase
MQTAPPLSAVVPLPAFSDNYIWALAHEGQAAVVDPGDAAPVLRWLRATGATLRAILLTHHHPDHVGGVLELVQATGATVYGPAGETLPHCDVRLAEGDRVTLPELALALEVLDVPGHTAGHIAYTGRAAGVERVLFCGDTLFAGGCGRLFEGTPAQMLDSLEKLSALPADTQVCCAHEYTLANLRWALAVEPANRTLQQWYQRAQELRNEGTPTLPSTIGQERETNPFLRTPHAAVAHAAAVWSGRSLATPVEVFAALRQWKNNFK
>CP018040.1|AUL05336.1|3426856_3427627_-|SAM-dependent-methyltransferase
MAEETPPIVELAEWFQTPPGQYVLAWEQAQFDEAVADIFGYYAWQVGLAEPNLLRANRMPFKAWVGAGVPPPELAQGWQACVAAAPEALPFESQSVDLLVLPHAFECAEAPHLVLREVERVLVPEGRVVISGFNPWSLWGARNLMPGMEAWLPLPLSAQVALPRLKDWFKLLSFEVERGRFGCYAPACRTDKWLRRWRFMERYGQRWWGLGGAVYVVTATKKVAAMRLIGPAWKTRRKRAQAASVVVNRQADDPGR
>CP018040.1|AUL05335.1|3426346_3426814_-|ribonuclease-HI
MQNLEGSGDGQQVEMWTDGACKGNPGPGGWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALKRPCRVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVRGHAGDPGNERADALANQGMEAARGR
>CP018040.1|AUL05334.1|3425399_3426350_+|IS481-family-transposase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>CP018040.1|AUL05333.1|3423797_3425318_+|hypothetical-protein
MPGFANMIQGELSAAPLETLSVHGICAAGVGAIQAAAQGIELGAHRRALAVASELPSRLFKRSRFAAPGYDAHFLRWMLSDGAGAMLLGDASQPLAGAANGVRLRLKWIHQRSFSGDYPVCMQLGQSAGGQAHLDYGSWSEAEAAGALLLRQDILLLPHLFDIGIHEYAKLVHDGWVDPRQVSHFLCHYSSEKFIPVVEDLMDKAGLAIARERWFSNLAWRGNTGAASILIMLAEFLQTRTVQPGEQIFCYIPESGRFMAAYMLLQAEGPDETAQPARARAVPAAAPAGEADFIAPPHDPAHAPQGLEPLLGELAAIITKGSIFFRAWTLSVRLPAREALRIAWTRGAGAGWTHGPRHLAGSWELRRGALGKGAMPDHNTAQRRTPNAASRRQIHVRHRRRYRHGVRLHHRGRRLGRLRAGQSPVGRSIRACAVAGSRRRRFLALDPHPGRLPVLHRQPAHRLVLSHPGRSGSERAQPGLSARPRAGRQLPHQRHNLHARLAVKIQ
>CP018040.1|AUL05332.1|3423486_3423819_+|hypothetical-protein
MPVAFDRVYLHSAGYFMPGEPVDNDAMDQYIAPLNRISGRIKNRILAENGIRQRYYAIDPEGRTRWSNAQLAAQAIQACLARGATSTCHRSRCWPAARRAAIRSCPGSPT
>CP018040.1|AUL05331.1|3422572_3423451_+|fatty-acid-desaturase
MVRPAEWLRHRRDWQSVLYLAALPALAAWQWVHGWHWALYAPMLFLTLGVGVIHHNHAHRRMWRPRWLNRLTDFWLTLLQGHPTFVFHAAHNANHHRYKHGPRDVARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAAWLGLWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWVNPLLFNIGLHTAHHENPRAHWSELRALHWQHYRDRVPSRLNERGLAPYMARVFVLGLFSRRCRTHTLMRP
>CP018040.1|AUL05330.1|3418667_3421646_+|hypothetical-protein
MQLWLPDGTATSVRANAAGGFEASSAGDMTSGLIRARATDRYGDTSQEVTYAYTDTVDKTAPVLSIAGVATDEATGRVTVTGRSEPDAQVTIRFPGGGRKTVRADANGAYRVRSDGDLPAGVIVVQAADAAGNSTQAQQAYQDTVDRTAPEPVQIALDTDAATGRLTVSGQAEPGGSVTVTWPDGTTQTVRVDADGGFRVTSAGDAAQGDVVVVVADQAGNRAAPVRAHYADPVDRTAPMTPTVRHATDAQTGRVTVMGRTEAGALVTVQFPDGSSKTVRAQNDGGYAATSDTDMVSGPIVVSAGDADGNRTPAQQVMYTDTLDKTAPASPSLTVREDAASGRATVTGQAEPGAAVRVVFPNGEAQTVTAGSDGAYSVTSTADMVAGEITVVAADASGNQSAPARTVFADAVDKTAPAAPTLALSEAADSGRLTVSGRTEPGASVRVTFPDGETVTVTAKADGTYTATSRADMIGGNVTVVATDTAGNAAAPVRAAYADTVDRTPPVLDTPVLNVASDSGRVTVTGVTEPGARVQVAIPGESLQTVTADSAGRYRAVSPGDVLQSGTVRVIATDAHGNASAPRDVPYQDAVDRTAPPLTIEAAVEQARTGVVNVSGKTEPNLMVSATFPDGQTAQARADGQGRYQLASPADVARSGRIAVSASDAAGNRAAARAEFTDQVDKTAPAVTIRAVTEQAGTGVATVSGATEPGATVSVTFPDGQVARATADRSGAYTVHSARDVTARGNISVIATDAAGNASPSVSRQFSNTVADTVPPSLTIAMVTTDPGNGRITVSGVTEAGARVHVVFPGGASDTVTADSKGGYRATSAGDVGSGAVTAQATDASANRSPLKTYAYTDAWQPRQLSAKDFSQSRYFVPLTTRGGTDNEPLLRITTNQQIPTAELRVALKPYKTEDRAGRLVREAITLKWGNAPGVGGDARALHFYVPDSAKAKLRKELTEVERSNDYKFWIEFTDTRFGGVARLYIKVISTL
>CP018040.1|AUL05329.1|3416279_3417368_+|hypothetical-protein
MTGSTAGKVLVVGALGVVGRAALEHFGQRPGLARVGLSRHAPDFAPEASWVSADLRDAQATRAALAAHGDATHVVYAALNEQPDLLKGWRDSGNVDLNTGMLRNTLDALREAPLRHVTLLQGTKAYGVHTGRPMPVPARETDAVRDHANFYFDQQDLLAERAAAQGFGWTIFRPQIVLGVALGSAMNPVATLGAYAALSREAGQPLRYPGHPHLLTECTDARLIARAIAWAWDEPRAHGEAFNIANGDVVLWQPVFERLAALFGMPLGEPVDTRMREAMPQLAERWRAIAERERLAVPELRDLIGLSWQYADATWAARHPLPVPPLVSTIKLRQAGFGDCIDTQDCIVEHLREMQRLRYLPR
>CP018040.1|AUL05339.1|3432110_3432503_-|osmotically-inducible-protein-OsmC
MTIQVRANTPGGLQYTATAEGHELPLAMPQPQGEGPDPHDYFDTALGGCKALTLMVYAQRKGLPLQAVDVDVVRDASEERKGIYRLTAKLKLHGDLDDAQIDELLKVADKCPLHKLMTATDIQVSTIVVE
>CP018040.1|AUL05340.1|3432640_3433321_+|hypothetical-protein
MSARQLLDQLLQSGQSLMQGAGAQAQQATQGGKGTFLAGLGGGALGAGALGLLLGSKKARKIGGKVAMYGGMAALGALAYRAYDQYQRNQAGGAAAPAPQTLDRLPPAPAEQHSNAVLVAMIGAAKADGHIGPDERQLLETELAKLSGDAGDRAWLEAELARPLDPAVIAQQARTPEMGAEMYLASLLVADEQSFMERAYLDELARQLKLPAELKQQLEAQVPAAA
>CP018040.1|AUL06130.1|3433325_3434297_-|ABC-transporter-substrate-binding-protein
MKSQVSILLAGCLLGAGAAAAQAPATYPDHAITIVVTFPPGGGTDLLARKLGAAMQQRLGQPVVVENRPGASGNIGARAVAEARPDGYTLLMVNSSFAVNPGVFRNLDFSPTRDFTAVINVAYVPSVIVTAEPAGDAGLPERLRQADTQSRTLAFASCGNGTPQHLAGEMLRQASGAWLQHVPYRGCGPALTDVLSRQVPLGIVTASSAAPFIHAGKLRALAVTSAQRSPLLPDVPTVAEQGAPGYELDQWHGLLAPAGTPPAVIQRLYEALSAIVAEPAMRRELESLGFNPVSEGPERFEALVQADIARFAALTARMGLRAD
>CP018040.1|AUL05341.1|3434392_3435295_-|IS481-family-transposase
MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHS
>CP018040.1|AUL05342.1|3436847_3437549_+|two-component-system-response-regulator-OmpR
MDNPHTKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLAARITRYAPDLLVLDRMLPGGDGADACRRLRDQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRKRGPSALTKDAPVSFGPFVFDPATRQLLRDDTPVKLTGGEINLLEALVRNAGKPLSRERLLALARDDDGGERNDRAIDIAILRLRRAIEEDPKQPRWIQTVWGIGYRFSP
>CP018040.1|AUL05343.1|3437548_3438973_+|ATPase
MKLLRLPAPRSLRMRLILLVLGSVLLAQAATLATVSYFRHKFMEDVAIDYIATTIRTLRASLSQVPTDERAEFVRQASGNQWRLWSRSLPADARLQRWHRGPQEDEAERERMRREYERRHPPPDDIRRDLRGLVSELNERLSDGTRVALSRGPRPEIFISLAPSPSPDDAPPLREWLVIPLERLDPPVATPLIAFWVGGIGLVLLLAAWFSWHITRPLTRLADAADQLAAGQPQRVEPSGPHETRVLGERFNAMLDALAESDSVRRTLLSGLPHDLKGPLSRMWLRIEMADDPTLKEGLRKDLQDMQHMVDQFIGFVRGTDPAAYRYAPLALGEWLAERVGAWQGAGTDIRLQAPDNGALGIQADAVALGRLLDNLIGNALHHGAPPVEVSLRRDADMAVLEVSDHGPGIAPERRTEALRPFARLDDARTRTGNVGLGLALAEAIARAHGGGLELRQAPSGGLLVRITLPLAKA
>CP018040.1|AUL05344.1|3440042_3441383_-|cytochrome-ubiquinol-oxidase-subunit-I
MNIPPLLLARAQFTASLGFLALFLAISLALAWLLLFFKLRARWSGQSGWTAAYRFWVRIFALAFVLALACAVPVLIQLGSLWSGLMDKIGNLAGPLLGYGVLSIFIVKSCFLGVMLFGQRRVSDAAHTLAVLMVAIGQLVAVGWVLALFSWLQTPDGAVLIDGRYQVYDWRAVVLNPSFGWRLGLTVLGAFLTAGFLMLGVTAMQALRRPLDDGERHAFRAGLTVALLASLLLGPVAAGMGEVTARLQPAKAAAAAGFWHSGAEPELVVFGWPSARAQANLAAVSLAGAGGRWLHRDASLGYLGLDKFSGMQPPVAFTFWSLRLALGLGLLMLAASCATLALTCRRGFDPVALPRWWLRVLSLLMFAGALGVVATWCYDLAGMQPYAVNRAVTQSEVLGPVTTPALLYSLAGHIALYAVLLAAFVGMLFHAARYGVVPVRKTGGSS
>CP018040.1|AUL05345.1|3441498_3443262_+|glutamine--tRNA-ligase
MTHAPTPPAASNFLRPIIEDDLQANRFQGKLWAGKPGPAALQAQGQPDPARIRTRFPPEPNGYLHIGHAKSICVNFGLARDYGGVCHLRFDDTNPEKEEQEYVDAIIEAVHWLGFDWQADGNDNLYFASDYFEFMYEFAEALVQAGHAYVDEQSAEEIRASRGTLTEPGTDSPWRDRPADESLLRLREMRDGKHPDGSLVLRARIDMASPNINLRDPVMYRVRHATHHRTGNAWCIYPMYSWAHPVEDALEGITHSICTLEFEDQRPFYDWILARLAELGKLARPLPHQYEFARLNLTYVVTSKRKLLQLVREGYVDGWDDPRMPTLFGLRRRGYTPSSIRLFCDRTAVSKSDSRIDYSLLEQAVRDDLDPVAPRSVAVLDPLKLVITNYPEGRSETCSAPRNPHDPQAGVREFPFTRELWIEQDDFREEPPKKYFRLFPGNTVRLKYGYVVRCTGFTKDESGKVVEVQAEYLPDTKSGTPGADSVKVKGNITWVSAAHAVPAQVHLYDRLFADAHPDGGDKDFLACLNPNSKQTVQAWLEPGIEAVPGATWQFERLGYFTVDSKDSRPEAPVLNRIVTLRDSWQAA
>CP018040.1|AUL05346.1|3443373_3444252_+|septum-site-determining-protein-MinC
MNTESLALDFKSATLYAIRVVLHDADTTRLRAALDKRMADAGSFFENEPVVIDATRVDAPVDWPALLQALADHNLPPIGVVAEGANLQGARDAGLVPVELSTSVARAPQVIDTAPPNDVATPVPSVPEATAEATAKAGPQDDEADGEQADEAPAHNPESVPTRAARETTEANRPTATPPQSSSALVITKPLRSGQRVYARHTDLIVIGMVSQGAEVIADGNVHVYGPLRGKAMAGARGDTSARIFTTQLDAELLAVAGVYRVVEDKLDRALHNQPALVRLDGDTLRIEALKG
>CP018040.1|AUL05347.1|3444364_3445180_+|septum-site-determining-protein-MinD
MTRIVVVTSGKGGVGKTTTSASFSAGLAMRGHKTAVIDFDVGLRNLDLIMGCERRVVYDFVNVIQGEASLKQALIKDKQLENLFILPASQTRDKDALTQEGVEKVIDELKEMGFDYIVCDSPAGIEAGALMAAYFADDALVVTNPEVSSVRDSDRILGILAAKSRRAVQGDEPVKEYLLLTRYNPKRVNDGEMLSLSDIEDILRIKLIGVIPESEAVLQASNQGLPAIHLKDTDVSEAYKDVVARFLGEERSLRFTDYEKPGLLKRLFGGK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Identity
CP018040_4	4.1\|1146810\|32\|CP018040\|CRISPRCasFinder	1146810-1146841	32	CP018040.1	1354625-1354656	1.0
CP018040_4	4.1\|1146810\|32\|CP018040\|CRISPRCasFinder	1146810-1146841	32	CP018040.1	1820700-1820731	1.0
CP018040_4	4.1\|1146810\|32\|CP018040\|CRISPRCasFinder	1146810-1146841	32	CP018040.1	1996813-1996844	1.0

1. spacer 4.1|1146810|32|CP018040|CRISPRCasFinder matches to position: 1354625-1354656, mismatch: 0, identity: 1.0

tttgccgccgggccgccccaaggcaaaaaagc	CRISPR spacer
tttgccgccgggccgccccaaggcaaaaaagc	Protospacer
********************************

2. spacer 4.1|1146810|32|CP018040|CRISPRCasFinder matches to position: 1820700-1820731, mismatch: 0, identity: 1.0

tttgccgccgggccgccccaaggcaaaaaagc	CRISPR spacer
tttgccgccgggccgccccaaggcaaaaaagc	Protospacer
********************************

3. spacer 4.1|1146810|32|CP018040|CRISPRCasFinder matches to position: 1996813-1996844, mismatch: 0, identity: 1.0

tttgccgccgggccgccccaaggcaaaaaagc	CRISPR spacer
tttgccgccgggccgccccaaggcaaaaaagc	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

27279 : 78575

Synechococcus_phage(25.0%)

transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL02627.1\|27279_28182_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02628.1\|28310_28610_-	hypothetical protein	NA	NA	NA	NA
AUL02629.1\|28670_29105_-	hypothetical protein	NA	NA	NA	NA
AUL02630.1\|29137_30355_-	thiolase	NA	NA	NA	NA
AUL02631.1\|30360_30858_-	dehydratase	NA	NA	NA	NA
AUL02632.1\|31065_32001_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL05910.1\|32210_33002_+	enoyl-CoA hydratase	NA	NA	NA	NA
AUL02633.1\|33044_34466_+	2-methylcitrate dehydratase	NA	NA	NA	NA
AUL02634.1\|34669_35572_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02635.1\|35568_36759_-	MFS transporter	NA	NA	NA	NA
AUL02636.1\|37008_37920_+\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
AUL02637.1\|37921_40060_+\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
AUL02638.1\|40056_40596_+	D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
AUL02639.1\|40599_41328_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
AUL02640.1\|41314_42208_+	hypothetical protein	NA	NA	NA	NA
AUL02641.1\|42278_42674_+	lactoylglutathione lyase	NA	NA	NA	NA
AUL02642.1\|42683_43214_+	peptide deformylase	E3SLL2	Synechococcus_phage	3.7e-12	35.4
AUL02643.1\|43342_43522_-	hypothetical protein	NA	NA	NA	NA
AUL05911.1\|45219_45744_+	hypothetical protein	NA	NA	NA	NA
AUL02644.1\|45715_45952_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
AUL02645.1\|46079_46973_+	hypothetical protein	NA	NA	NA	NA
AUL02646.1\|48142_49390_+	homoserine O-acetyltransferase	NA	NA	NA	NA
AUL02647.1\|49386_50001_+	methionine biosynthesis protein MetW	NA	NA	NA	NA
AUL02648.1\|51128_52385_+	muropeptide transporter AmpG	NA	NA	NA	NA
AUL02649.1\|53616_54351_-	glutamate racemase	NA	NA	NA	NA
AUL02650.1\|54356_54947_-	arginine transporter ATP-binding subunit	G9BWD6	Planktothrix_phage	3.2e-20	33.6
AUL02651.1\|54971_55661_-	amino acid ABC transporter permease	NA	NA	NA	NA
AUL02652.1\|55657_56419_-	glutamate ABC transporter permease	NA	NA	NA	NA
AUL02653.1\|56498_57398_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL02654.1\|57491_58442_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02655.1\|59242_60469_-	serine kinase HipA	NA	NA	NA	NA
AUL02656.1\|60468_60888_-	transcriptional regulator	NA	NA	NA	NA
AUL05912.1\|61071_62013_-	hypothetical protein	NA	NA	NA	NA
AUL02657.1\|62435_63272_-	hypothetical protein	NA	NA	NA	NA
AUL02658.1\|64057_64360_-	ferredoxin	NA	NA	NA	NA
AUL02659.1\|64478_65537_-	oxidoreductase	NA	NA	NA	NA
AUL02660.1\|65571_66843_-	hypothetical protein	NA	NA	NA	NA
AUL02661.1\|66873_67128_-	hypothetical protein	NA	NA	NA	NA
AUL02662.1\|67472_68654_-	hypothetical protein	NA	NA	NA	NA
AUL02663.1\|69123_70026_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02664.1\|70119_70434_+\|transposase	transposase	NA	NA	NA	NA
AUL02665.1\|71626_73534_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.1e-117	37.2
AUL02666.1\|73695_74316_-	glutathione S-transferase	NA	NA	NA	NA
AUL02667.1\|74347_74929_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	1.7e-05	54.3
AUL02668.1\|75017_75269_-	hypothetical protein	NA	NA	NA	NA
AUL02669.1\|75270_76113_-	hypothetical protein	NA	NA	NA	NA
AUL02670.1\|76218_77628_+	signal recognition particle protein	NA	NA	NA	NA
AUL02671.1\|77624_78575_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

107417 : 175239

Bacillus_phage(22.22%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL02700.1\|107417_108320_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02701.1\|109266_110460_+	cystathionine beta-lyase	NA	NA	NA	NA
AUL02702.1\|110541_111171_-	thiol:disulfide interchange protein	NA	NA	NA	NA
AUL02703.1\|111232_111916_-	cell division protein	NA	NA	NA	NA
AUL02704.1\|111925_113608_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
AUL05915.1\|113895_114243_+	hypothetical protein	NA	NA	NA	NA
AUL02705.1\|114333_114651_+	hypothetical protein	NA	NA	NA	NA
AUL05916.1\|114933_115950_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AUL02706.1\|116025_116826_-	ABC transporter permease	NA	NA	NA	NA
AUL02707.1\|116822_117698_-	ABC transporter permease	NA	NA	NA	NA
AUL02708.1\|117708_119001_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL02709.1\|119043_120084_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.0e-22	33.7
AUL02710.1\|120189_121011_-	phosphodiesterase	NA	NA	NA	NA
AUL02711.1\|121111_122014_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02712.1\|122159_123065_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.8e-21	31.7
AUL02713.1\|123061_123895_-	ABC transporter permease	NA	NA	NA	NA
AUL02714.1\|124731_125742_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL02715.1\|125738_126128_-	hypothetical protein	NA	NA	NA	NA
AUL02716.1\|126111_126723_+	hypothetical protein	NA	NA	NA	NA
AUL02717.1\|127009_128275_+	amidase	NA	NA	NA	NA
AUL02718.1\|128365_130066_-	2-isopropylmalate synthase	NA	NA	NA	NA
AUL02719.1\|130492_131140_-	hypothetical protein	NA	NA	NA	NA
AUL02720.1\|131138_132578_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA
AUL02721.1\|132688_132973_+	bacterioferritin	NA	NA	NA	NA
AUL02722.1\|133000_133879_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL02723.1\|135145_136096_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02724.1\|136224_136467_+	hypothetical protein	NA	NA	NA	NA
AUL02725.1\|136514_138023_-	PLP-dependent threonine dehydratase	NA	NA	NA	NA
AUL02726.1\|138769_142732_+	FAD-linked oxidase	NA	NA	NA	NA
AUL02727.1\|142784_143567_+	GntR family transcriptional regulator	NA	NA	NA	NA
AUL02728.1\|143654_144878_-	CoA transferase	NA	NA	NA	NA
AUL05917.1\|144861_145794_-	lipase	NA	NA	NA	NA
AUL02729.1\|145799_146612_-	enoyl-CoA hydratase	NA	NA	NA	NA
AUL02730.1\|146632_147076_-	hypothetical protein	NA	NA	NA	NA
AUL02731.1\|147094_147853_-	hypothetical protein	NA	NA	NA	NA
AUL02732.1\|147924_148896_-	hypothetical protein	NA	NA	NA	NA
AUL02733.1\|149014_149797_+	IclR family transcriptional regulator	NA	NA	NA	NA
AUL02734.1\|150563_151544_-	carboxylase	NA	NA	NA	NA
AUL02735.1\|151540_152269_-	allophanate hydrolase	NA	NA	NA	NA
AUL02736.1\|152293_152725_-	glyoxalase	NA	NA	NA	NA
AUL02737.1\|152826_153702_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUL02738.1\|153753_154953_-	D-3-phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	3.1e-91	42.6
AUL02739.1\|155056_155518_-	metal-binding protein	NA	NA	NA	NA
AUL02740.1\|155623_157021_-	two-component sensor histidine kinase	NA	NA	NA	NA
AUL02741.1\|157017_157695_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.5e-29	35.2
AUL02742.1\|157750_159061_-	phosphate regulon sensor histidine kinase PhoR	A0A1V0SGX0	Hokovirus	6.2e-16	25.5
AUL02743.1\|159072_159771_-	phosphate regulon transcriptional regulatory protein PhoB	W8CYM9	Bacillus_phage	8.6e-33	37.1
AUL02744.1\|159934_160711_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase	NA	NA	NA	NA
AUL02745.1\|160876_161899_+	hypothetical protein	NA	NA	NA	NA
AUL02746.1\|162127_162763_+	hypothetical protein	NA	NA	NA	NA
AUL02747.1\|162768_164322_+	ubiquinone biosynthesis regulatory protein kinase UbiB	A0A2N9QVT9	Dishui_lake_phycodnavirus	1.0e-33	28.7
AUL02748.1\|164880_165831_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02749.1\|167274_168177_-	hypothetical protein	NA	NA	NA	NA
AUL02750.1\|168154_168784_-	hypothetical protein	NA	NA	NA	NA
AUL02751.1\|169066_170497_+	RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.8e-44	29.8
AUL02752.1\|170530_171160_+	threonine transporter RhtB	NA	NA	NA	NA
AUL02753.1\|171208_172816_+	peptide chain release factor 3	A0A2K9L6L3	Tupanvirus	9.3e-14	37.8
AUL02754.1\|172852_173524_+	hypothetical protein	NA	NA	NA	NA
AUL05918.1\|173605_174082_-	bacterioferritin	NA	NA	NA	NA
AUL02755.1\|174336_175239_+\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

224436 : 278073

Bacillus_phage(25.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL02790.1\|224436_225387_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02791.1\|225605_226301_+	GntR family transcriptional regulator	NA	NA	NA	NA
AUL02792.1\|226317_227730_+	hydroxyacid dehydrogenase	NA	NA	NA	NA
AUL02793.1\|227842_229273_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
AUL02794.1\|229314_231228_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
AUL02795.1\|231546_232113_+	preprotein translocase subunit SecD	NA	NA	NA	NA
AUL02796.1\|232203_233205_+	restriction endonuclease	NA	NA	NA	NA
AUL02797.1\|233319_234270_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02798.1\|234356_235307_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02799.1\|235303_236254_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02800.1\|236352_237150_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA
AUL02801.1\|238099_238510_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
AUL02802.1\|238759_239515_+	gamma-hydroxybutyrate dehydrogenase	D2K0C8	Staphylococcus_phage	4.6e-32	55.0
AUL02803.1\|239531_240275_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUL02804.1\|240318_241362_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL05922.1\|242375_243635_+	hypothetical protein	NA	NA	NA	NA
AUL02805.1\|245045_246002_+	hypothetical protein	NA	NA	NA	NA
AUL02806.1\|246020_246512_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
AUL02807.1\|246508_247864_-	poly(A) polymerase	A0A1B1IVF3	uncultured_Mediterranean_phage	3.4e-25	36.8
AUL02808.1\|247864_248563_-	hypothetical protein	NA	NA	NA	NA
AUL02809.1\|248559_249261_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA
AUL02810.1\|249513_250563_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.6e-68	43.6
AUL02811.1\|250668_251610_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
AUL02812.1\|251606_253496_-	DNA mismatch repair protein MutL	A0A1B2LRQ5	Wolbachia_phage	3.3e-79	32.8
AUL05923.1\|253600_254221_+	hypothetical protein	NA	NA	NA	NA
AUL02813.1\|254363_255749_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	4.5e-17	30.3
AUL02814.1\|255679_256216_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
AUL02815.1\|256367_257759_+	fumarate hydratase, class II	NA	NA	NA	NA
AUL02816.1\|257775_258756_-	hypothetical protein	NA	NA	NA	NA
AUL02817.1\|258891_259875_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL02818.1\|259939_260839_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL02819.1\|260945_262700_+	gamma-glutamyltransferase	NA	NA	NA	NA
AUL02820.1\|262707_263817_-	carnitine dehydratase	NA	NA	NA	NA
AUL02821.1\|263844_264825_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL02822.1\|265555_266506_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02823.1\|266520_266892_+	hypothetical protein	NA	NA	NA	NA
AUL02824.1\|267065_267611_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AUL02825.1\|267736_269314_+	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA
AUL02826.1\|269329_270484_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
AUL02827.1\|270497_270623_+	cyd operon protein YbgT	NA	NA	NA	NA
AUL02828.1\|270619_272371_+	thiol reductant ABC exporter subunit CydD	W8CYL7	Bacillus_phage	3.4e-09	23.8
AUL02829.1\|272367_274047_+	thiol reductant ABC exporter subunit CydC	W8CYL7	Bacillus_phage	3.6e-16	27.6
AUL02830.1\|274109_274658_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.3e-28	43.1
AUL02831.1\|275800_276079_+	hypothetical protein	NA	NA	NA	NA
AUL02832.1\|277122_278073_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

390835 : 448344

Orpheovirus(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL02939.1\|390835_391786_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02940.1\|391928_392840_+	reductase	NA	NA	NA	NA
AUL02941.1\|392836_393085_+	NrdH-redoxin	NA	NA	NA	NA
AUL02942.1\|393081_394287_+	CoA transferase	NA	NA	NA	NA
AUL02943.1\|394359_395355_-	hypothetical protein	NA	NA	NA	NA
AUL02944.1\|395377_396598_-	acyl-CoA transferase	NA	NA	NA	NA
AUL02945.1\|396594_397239_-	hypothetical protein	NA	NA	NA	NA
AUL02946.1\|397235_397628_-	hypothetical protein	NA	NA	NA	NA
AUL02947.1\|397516_398869_-	hypothetical protein	NA	NA	NA	NA
AUL02948.1\|398969_399779_-	IclR family transcriptional regulator	NA	NA	NA	NA
AUL05931.1\|400083_401037_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	5.6e-59	42.5
AUL02949.1\|401135_402119_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02950.1\|402795_403566_-	enoyl-CoA hydratase	NA	NA	NA	NA
AUL02951.1\|403562_404741_-	carnitine dehydratase	NA	NA	NA	NA
AUL02952.1\|404908_406615_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA
AUL02953.1\|406611_407508_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL02954.1\|407548_409138_-	sulfurtransferase	NA	NA	NA	NA
AUL02955.1\|409187_410180_-	hypothetical protein	NA	NA	NA	NA
AUL02956.1\|410248_410848_-	hypothetical protein	NA	NA	NA	NA
AUL02957.1\|411308_412289_-	hypothetical protein	NA	NA	NA	NA
AUL02958.1\|412364_413267_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02959.1\|413403_414318_+	EamA family transporter	NA	NA	NA	NA
AUL02960.1\|414314_414974_+	hypothetical protein	NA	NA	NA	NA
AUL02961.1\|415063_415987_+	alpha/beta hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	4.8e-07	27.2
AUL02962.1\|415992_416448_-	hypothetical protein	NA	NA	NA	NA
AUL02963.1\|416444_417548_-	hypothetical protein	NA	NA	NA	NA
AUL02964.1\|417735_419355_-	dolichyl-phosphate-mannose--protein mannosyltransferase	NA	NA	NA	NA
AUL02965.1\|419351_420410_-	glycosyltransferase	I1TED8	Salmonella_phage	2.8e-59	40.5
AUL02966.1\|420539_421034_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AUL02967.1\|421126_422104_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02968.1\|422299_423505_+	sodium/glutamate symporter	NA	NA	NA	NA
AUL02969.1\|423501_425013_+	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL05932.1\|425028_426342_-	short-chain fatty acid transporter	NA	NA	NA	NA
AUL02970.1\|426532_426712_-	hypothetical protein	NA	NA	NA	NA
AUL02971.1\|427121_427856_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.4e-41	43.8
AUL02972.1\|430348_431251_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL02973.1\|431382_431781_-	elongation factor G	E4ZFJ7	Streptococcus_phage	9.0e-19	44.3
AUL02974.1\|432191_432662_-	universal stress protein	NA	NA	NA	NA
AUL02975.1\|432750_433095_-	TIGR01244 family protein	NA	NA	NA	NA
AUL02976.1\|433194_434595_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUL02977.1\|436383_436902_-	methyltransferase	G3MA03	Bacillus_virus	2.1e-12	38.9
AUL02978.1\|437012_437768_+	hypothetical protein	A0A0R6PEZ3	Moraxella_phage	2.9e-42	40.8
AUL02979.1\|437963_439196_+	CoA transferase	NA	NA	NA	NA
AUL02980.1\|439188_439974_+	enoyl-CoA hydratase	NA	NA	NA	NA
AUL02981.1\|440040_441012_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL02982.1\|441022_442000_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL02983.1\|442125_443298_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
AUL02984.1\|443324_444353_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
AUL02985.1\|444418_445612_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA
AUL02986.1\|447393_448344_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

619725 : 720183

108

Pseudomonas_phage(11.54%)

transposase,terminase,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL03136.1\|619725_620676_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03137.1\|621374_621758_+	hypothetical protein	NA	NA	NA	NA
AUL03138.1\|621815_622418_+	hypothetical protein	NA	NA	NA	NA
AUL05939.1\|622435_622837_-	hypothetical protein	NA	NA	NA	NA
AUL03139.1\|622952_623864_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUL03140.1\|623860_624442_+	NUDIX hydrolase	NA	NA	NA	NA
AUL05940.1\|625245_625971_+	arginyltransferase	NA	NA	NA	NA
AUL03141.1\|626011_627061_+	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
AUL03142.1\|627208_627787_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA
AUL03143.1\|628173_629151_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL03144.1\|629244_633639_-	dermonecrotic toxin	NA	NA	NA	NA
AUL03145.1\|633839_634688_-	IclR family transcriptional regulator	NA	NA	NA	NA
AUL03146.1\|634846_635659_-	competence/damage-inducible protein A	NA	NA	NA	NA
AUL03147.1\|635712_636663_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03148.1\|636760_637561_-	hypothetical protein	NA	NA	NA	NA
AUL03149.1\|637622_638006_+	thiol reductase thioredoxin	NA	NA	NA	NA
AUL03150.1\|638017_639451_-	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.5e-52	34.4
AUL03151.1\|639656_639986_-	hypothetical protein	NA	NA	NA	NA
AUL03152.1\|639988_640738_-	hypothetical protein	NA	NA	NA	NA
AUL03153.1\|640920_641841_+	branched chain amino acid aminotransferase	NA	NA	NA	NA
AUL03154.1\|641887_642100_+	hypothetical protein	NA	NA	NA	NA
AUL03155.1\|642122_642545_+	DUF4440 domain-containing protein	NA	NA	NA	NA
AUL03156.1\|642561_643662_+	alpha/beta hydrolase	NA	NA	NA	NA
AUL03157.1\|643758_645276_-	peptidase	NA	NA	NA	NA
AUL05941.1\|646211_647084_-	hypothetical protein	NA	NA	NA	NA
AUL03158.1\|647174_648269_-	porin	NA	NA	NA	NA
AUL03159.1\|648562_649465_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05942.1\|649587_650529_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03160.1\|650612_650972_-	hypothetical protein	NA	NA	NA	NA
AUL03161.1\|651353_652391_-	hypothetical protein	NA	NA	NA	NA
AUL03162.1\|652707_654048_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA
AUL03163.1\|654057_654510_-	hypothetical protein	NA	NA	NA	NA
AUL03164.1\|654615_655788_+	monooxygenase	NA	NA	NA	NA
AUL03165.1\|655853_656879_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
AUL03166.1\|656919_657159_+	Fis family transcriptional regulator	NA	NA	NA	NA
AUL03167.1\|657228_658818_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.7e-65	47.2
AUL03168.1\|658817_659366_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
AUL03169.1\|659446_660019_+	Holliday junction DNA helicase RuvA	NA	NA	NA	NA
AUL03170.1\|660037_660949_-	NAD-dependent dehydratase	NA	NA	NA	NA
AUL03171.1\|661022_661991_-	serine dehydratase	NA	NA	NA	NA
AUL03172.1\|662113_663187_+	Holliday junction DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.3e-08	25.7
AUL03173.1\|663191_665012_-	ATP-dependent DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	3.1e-74	35.3
AUL03174.1\|665088_665991_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03175.1\|666127_666463_+	hypothetical protein	NA	NA	NA	NA
AUL03176.1\|666596_667247_+	carbonate dehydratase	NA	NA	NA	NA
AUL03177.1\|667268_668687_-	amidase	NA	NA	NA	NA
AUL03178.1\|668756_669512_-	hypothetical protein	NA	NA	NA	NA
AUL05943.1\|669480_670239_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AUL03179.1\|670249_671131_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AUL03180.1\|671147_671855_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.2e-07	25.4
AUL03181.1\|671857_672616_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.4e-14	24.4
AUL03182.1\|672825_674568_+	sulfite reductase	NA	NA	NA	NA
AUL03183.1\|674560_675085_+	hypothetical protein	NA	NA	NA	NA
AUL03184.1\|675124_675919_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL03185.1\|676086_677160_+	hypothetical protein	NA	NA	NA	NA
AUL03186.1\|677258_678209_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03187.1\|678460_678667_-	hypothetical protein	NA	NA	NA	NA
AUL05944.1\|678738_679350_-	LexA family transcriptional repressor	NA	NA	NA	NA
AUL03188.1\|679829_680150_-	hypothetical protein	NA	NA	NA	NA
AUL03189.1\|680142_680841_-	hypothetical protein	NA	NA	NA	NA
AUL03190.1\|680855_681077_-	hypothetical protein	NA	NA	NA	NA
AUL03191.1\|681094_682045_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03192.1\|682684_683170_+\|terminase	terminase	C7U0W1	Enterobacteria_phage	7.3e-39	61.5
AUL03193.1\|683156_684434_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.4e-150	64.7
AUL03194.1\|684436_685855_+	hypothetical protein	R9TF43	Synechococcus_phage	2.2e-99	42.1
AUL03195.1\|685826_686939_+	hypothetical protein	A0A0H5BBX3	Pseudomonas_phage	2.1e-102	49.7
AUL03196.1\|686944_687187_+	hypothetical protein	A0A0H5AUE5	Pseudomonas_phage	5.6e-16	53.2
AUL03197.1\|687309_687912_+	hypothetical protein	R9TF81	Synechococcus_phage	7.9e-27	43.6
AUL03198.1\|688340_689291_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03199.1\|689965_690217_+	hypothetical protein	NA	NA	NA	NA
AUL03200.1\|690279_690762_+	hypothetical protein	A0A2H4JE38	uncultured_Caudovirales_phage	1.8e-13	37.1
AUL03201.1\|690763_690964_+	hypothetical protein	NA	NA	NA	NA
AUL03202.1\|690963_691359_+	hypothetical protein	A0A2D2W284	Stenotrophomonas_phage	7.8e-07	35.0
AUL03203.1\|691355_691754_+	hypothetical protein	I6PCW1	Cronobacter_phage	4.2e-16	38.0
AUL03204.1\|691750_692173_+	hypothetical protein	NA	NA	NA	NA
AUL03205.1\|692180_692681_+	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	4.4e-31	45.1
AUL03206.1\|692935_693454_+\|tail	phage tail protein	A0A1S5R1H0	Pseudomonas_phage	5.4e-24	38.3
AUL03207.1\|693463_693793_+	hypothetical protein	A0A2H4J121	uncultured_Caudovirales_phage	2.9e-15	44.0
AUL03208.1\|693810_694101_+	hypothetical protein	A0A2H4JBP7	uncultured_Caudovirales_phage	3.7e-14	45.2
AUL03209.1\|696747_697107_+	hypothetical protein	NA	NA	NA	NA
AUL03210.1\|697174_697708_+	hypothetical protein	A5A3Q9	Burkholderia_phage	1.1e-40	46.9
AUL03211.1\|697704_698094_+	hypothetical protein	A0A0G3EYJ9	Achromobacter_phage	3.0e-35	50.0
AUL03212.1\|698086_702043_+	hypothetical protein	A0A0B5A1N2	Achromobacter_phage	3.9e-215	40.8
AUL03213.1\|702047_702464_+	hypothetical protein	NA	NA	NA	NA
AUL03214.1\|702682_702946_+	hypothetical protein	A0A1B0V3F2	Roseobacter_phage	7.2e-09	41.8
AUL03215.1\|702945_703758_+	hypothetical protein	NA	NA	NA	NA
AUL03216.1\|703762_704005_+	hypothetical protein	NA	NA	NA	NA
AUL03217.1\|703983_704535_+	lysozyme	NA	NA	NA	NA
AUL03218.1\|704534_705050_+	hypothetical protein	NA	NA	NA	NA
AUL03219.1\|705046_705328_-	hypothetical protein	NA	NA	NA	NA
AUL03220.1\|705327_705549_-	hypothetical protein	NA	NA	NA	NA
AUL03221.1\|705877_706549_-	hypothetical protein	Q5QF62	Pseudomonas_virus	4.7e-36	39.9
AUL03222.1\|706476_706845_-	hypothetical protein	NA	NA	NA	NA
AUL03223.1\|706904_707591_-	DNA-binding response regulator	NA	NA	NA	NA
AUL03224.1\|707571_708144_-	RNA pyrophosphohydrolase	NA	NA	NA	NA
AUL03225.1\|708209_709940_+\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	4.6e-11	29.4
AUL03226.1\|709992_710421_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA
AUL03227.1\|710423_711104_+	protein TolQ	NA	NA	NA	NA
AUL03228.1\|711103_711562_+	protein TolR	NA	NA	NA	NA
AUL03229.1\|711598_712573_+	protein TolA	NA	NA	NA	NA
AUL03230.1\|712589_713906_+	Tol-Pal system beta propeller repeat protein TolB	NA	NA	NA	NA
AUL03231.1\|713937_714435_+	peptidoglycan-associated lipoprotein	NA	NA	NA	NA
AUL03232.1\|714521_715211_+	tol-pal system protein YbgF	NA	NA	NA	NA
AUL03233.1\|715210_716260_+	iron-siderophore ABC transporter permease	NA	NA	NA	NA
AUL03234.1\|716256_717051_+	iron ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-15	30.6
AUL03235.1\|717219_717570_+	hypothetical protein	NA	NA	NA	NA
AUL03236.1\|717545_718103_+	hypothetical protein	NA	NA	NA	NA
AUL03237.1\|719232_720183_+\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

860745 : 999478

119

Bacillus_phage(11.76%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL03339.1\|860745_861696_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03340.1\|861916_862585_+	transcriptional regulator	NA	NA	NA	NA
AUL03341.1\|862708_863815_+	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
AUL03342.1\|863827_866941_+	multidrug efflux protein	S5VTK5	Leptospira_phage	4.5e-57	21.5
AUL03343.1\|866937_868431_+	RND transporter	NA	NA	NA	NA
AUL03344.1\|868445_869117_+	MarR family transcriptional regulator	NA	NA	NA	NA
AUL05954.1\|869160_869613_-	azurin	NA	NA	NA	NA
AUL03345.1\|869795_870443_-	IclR family transcriptional regulator	NA	NA	NA	NA
AUL05955.1\|870546_872595_+	hydantoinase	NA	NA	NA	NA
AUL03346.1\|872591_874604_+	hydantoin utilization protein B	NA	NA	NA	NA
AUL03347.1\|874629_875964_+	hypothetical protein	NA	NA	NA	NA
AUL03348.1\|876072_877065_+	hypothetical protein	NA	NA	NA	NA
AUL03349.1\|877131_879216_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
AUL03350.1\|879240_880212_-	hypothetical protein	NA	NA	NA	NA
AUL03351.1\|880340_881342_-	peptidase M14	NA	NA	NA	NA
AUL03352.1\|881375_882527_-	cystathionine beta-lyase	NA	NA	NA	NA
AUL03353.1\|882730_883621_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUL03354.1\|883698_884523_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AUL05956.1\|884719_885736_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AUL03355.1\|886973_888101_-	argininosuccinate lyase	NA	NA	NA	NA
AUL03356.1\|888091_888466_-	hypothetical protein	NA	NA	NA	NA
AUL03357.1\|888513_889902_-	hypothetical protein	NA	NA	NA	NA
AUL03358.1\|889932_890922_-	hypothetical protein	NA	NA	NA	NA
AUL03359.1\|891032_892265_-	methylaspartate ammonia-lyase	NA	NA	NA	NA
AUL03360.1\|892546_893347_+	IclR family transcriptional regulator	NA	NA	NA	NA
AUL03361.1\|893369_895601_-\|holin	high-affinity choline transporter BetT	NA	NA	NA	NA
AUL03362.1\|896388_896835_-	preprotein translocase subunit SecG	NA	NA	NA	NA
AUL03363.1\|896856_897603_-	triose-phosphate isomerase	NA	NA	NA	NA
AUL03364.1\|897746_898724_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA
AUL03365.1\|899357_899969_+	PIN domain-containing protein	K4HZX4	Acidithiobacillus_phage	3.3e-12	32.5
AUL03366.1\|899962_901180_-	threonine ammonia-lyase	NA	NA	NA	NA
AUL03367.1\|901320_902271_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03368.1\|902267_902987_-	hypothetical protein	NA	NA	NA	NA
AUL03369.1\|903107_905267_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
AUL03370.1\|905357_905627_-	30S ribosomal protein S15	NA	NA	NA	NA
AUL05957.1\|905920_906448_+	hypothetical protein	NA	NA	NA	NA
AUL03371.1\|906466_907246_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AUL03372.1\|907413_908430_-	ketol-acid reductoisomerase	NA	NA	NA	NA
AUL03373.1\|908502_908994_-	acetolactate synthase small subunit	NA	NA	NA	NA
AUL03374.1\|909004_910720_-	acetolactate synthase, large subunit, biosynthetic type	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	3.1e-60	30.3
AUL03375.1\|911190_911802_+	hypothetical protein	NA	NA	NA	NA
AUL03376.1\|911883_912834_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03377.1\|912830_914663_-	multidrug ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-27	26.4
AUL03378.1\|915061_915721_+	thiopurine S-methyltransferase	NA	NA	NA	NA
AUL03379.1\|916069_916237_+	hypothetical protein	NA	NA	NA	NA
AUL03380.1\|916248_916929_-	hypothetical protein	NA	NA	NA	NA
AUL03381.1\|917210_917927_+	flagellar brake protein	NA	NA	NA	NA
AUL03382.1\|917941_919243_-	phospholipase	NA	NA	NA	NA
AUL03383.1\|921387_924276_+	metal-dependent phosphohydrolase	NA	NA	NA	NA
AUL03384.1\|924499_925852_+	hypothetical protein	NA	NA	NA	NA
AUL03385.1\|925880_926402_+	acetyl-CoA carboxylase, biotin carboxyl carrier protein	NA	NA	NA	NA
AUL03386.1\|926398_927853_+	carboxylase	NA	NA	NA	NA
AUL03387.1\|927887_928136_+	hypothetical protein	NA	NA	NA	NA
AUL03388.1\|928241_929117_+	hypothetical protein	NA	NA	NA	NA
AUL03389.1\|929142_930198_+	hypothetical protein	NA	NA	NA	NA
AUL03390.1\|930210_931002_+	GntR family transcriptional regulator	NA	NA	NA	NA
AUL03391.1\|931034_932405_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
AUL03392.1\|933581_934532_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03393.1\|934596_934806_+	hypothetical protein	NA	NA	NA	NA
AUL03394.1\|934965_935178_+	hypothetical protein	NA	NA	NA	NA
AUL03395.1\|935297_936416_+	N-acylglucosamine 2-epimerase	NA	NA	NA	NA
AUL03396.1\|936512_936728_+	hypothetical protein	NA	NA	NA	NA
AUL03397.1\|936921_937173_+	hypothetical protein	NA	NA	NA	NA
AUL03398.1\|937333_938236_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03399.1\|938232_938616_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA
AUL03400.1\|938670_940485_-	metal ABC transporter permease	W8CYL7	Bacillus_phage	5.7e-44	27.9
AUL05958.1\|940634_941462_+	oxidoreductase	A0A2H4PQR8	Staphylococcus_phage	1.7e-67	47.4
AUL03401.1\|941507_942488_+	alcohol dehydrogenase	NA	NA	NA	NA
AUL03402.1\|942484_942697_-	hypothetical protein	NA	NA	NA	NA
AUL03403.1\|942693_943875_-	hypothetical protein	NA	NA	NA	NA
AUL03404.1\|944038_944773_+	serine/threonine protein phosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.9e-62	49.2
AUL03405.1\|944774_947387_-	penicillin-binding protein	NA	NA	NA	NA
AUL03406.1\|947522_949436_-	S9 family peptidase	NA	NA	NA	NA
AUL03407.1\|950051_950462_-	phenylacetic acid degradation protein	NA	NA	NA	NA
AUL03408.1\|951741_952692_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03409.1\|952688_953663_-	hypothetical protein	NA	NA	NA	NA
AUL03410.1\|953808_954699_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	4.3e-05	27.6
AUL03411.1\|954975_955368_-	hypothetical protein	A0A0R6PJ17	Moraxella_phage	4.8e-25	45.0
AUL03412.1\|955497_956448_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03413.1\|956477_956660_-	addiction module toxin, HicA family	A0A1L2JY37	Aeribacillus_phage	3.7e-12	56.1
AUL03414.1\|957431_958613_-	MFS transporter	NA	NA	NA	NA
AUL03415.1\|958827_959505_-	phosphoglycolate phosphatase	NA	NA	NA	NA
AUL03416.1\|959501_960227_-	bifunctional 3-demethylubiquinol 3-O-methyltransferase/2-polyprenyl-6-hydroxyphenol methylase	NA	NA	NA	NA
AUL03417.1\|960352_960934_-	hypothetical protein	NA	NA	NA	NA
AUL03418.1\|961304_963986_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	3.2e-104	33.5
AUL05959.1\|963988_965119_+	phosphoserine transaminase	M1Q1P2	Streptococcus_phage	4.9e-78	44.0
AUL03419.1\|965111_966197_+	chorismate mutase	NA	NA	NA	NA
AUL03420.1\|966283_967183_+	prephenate dehydrogenase	NA	NA	NA	NA
AUL03421.1\|967179_968508_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
AUL03422.1\|968522_969194_+	cytidylate kinase	NA	NA	NA	NA
AUL03423.1\|969381_971097_+	30S ribosomal protein S1	NA	NA	NA	NA
AUL03424.1\|971098_971458_+	integration host factor subunit beta	NA	NA	NA	NA
AUL03425.1\|971649_971964_+	hypothetical protein	NA	NA	NA	NA
AUL03426.1\|972006_973227_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
AUL03427.1\|973223_974165_+	hypothetical protein	A0A2H4N7X4	Lake_Baikal_phage	1.5e-16	28.1
AUL03428.1\|974161_975151_+	ADP-glyceromanno-heptose 6-epimerase	E3SJ87	Synechococcus_phage	2.2e-26	34.4
AUL05960.1\|975440_975770_+	hypothetical protein	NA	NA	NA	NA
AUL03429.1\|975868_976819_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03430.1\|976899_977811_+	cysteine synthase B	A0A1X9I5K7	Streptococcus_phage	8.0e-47	38.8
AUL03431.1\|977871_979017_-	lytic murein transglycosylase B	NA	NA	NA	NA
AUL03432.1\|979036_979951_+	deacetylase	A0A2K9KZC4	Tupanvirus	9.8e-45	34.7
AUL03433.1\|980022_980772_+	electron transporter RnfB	NA	NA	NA	NA
AUL03434.1\|980771_981701_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
AUL03435.1\|981944_983771_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
AUL03436.1\|983853_984495_+	peroxidase	NA	NA	NA	NA
AUL03437.1\|984684_985719_+	sulfate transporter subunit	NA	NA	NA	NA
AUL03438.1\|985734_985938_+	hypothetical protein	NA	NA	NA	NA
AUL03439.1\|985959_986634_+	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA
AUL03440.1\|986748_987531_+	sulfate ABC transporter permease subunit CysW	NA	NA	NA	NA
AUL03441.1\|987555_988620_+	sulfate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.8e-24	30.3
AUL05961.1\|989417_990326_+	sulfate adenylyltransferase small subunit	NA	NA	NA	NA
AUL03442.1\|991813_993088_+	radical SAM protein	NA	NA	NA	NA
AUL03443.1\|993241_993622_+	hypothetical protein	NA	NA	NA	NA
AUL03444.1\|993629_994502_-	multidrug DMT transporter permease	NA	NA	NA	NA
AUL03445.1\|994807_995188_+	50S ribosomal protein L19	NA	NA	NA	NA
AUL03446.1\|995437_996124_+	coenzyme A pyrophosphatase	NA	NA	NA	NA
AUL03447.1\|996219_997170_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03448.1\|997274_998324_+	aldo/keto reductase	NA	NA	NA	NA
AUL05962.1\|998461_999478_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

1023281 : 1079418

uncultured_Mediterranean_phage(37.5%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL03463.1\|1023281_1024184_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03464.1\|1024329_1025280_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03465.1\|1026312_1028349_+	transketolase	NA	NA	NA	NA
AUL03466.1\|1028366_1029377_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AUL03467.1\|1029494_1030688_+	phosphoglycerate kinase	NA	NA	NA	NA
AUL03468.1\|1030717_1031491_-	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA
AUL03469.1\|1031487_1032678_-	acetate kinase	NA	NA	NA	NA
AUL03470.1\|1032703_1033642_-	phosphate acetyltransferase	NA	NA	NA	NA
AUL05964.1\|1033638_1035987_-	3-hydroxyalkanoate synthetase	NA	NA	NA	NA
AUL03471.1\|1036141_1036783_-	glutathione S-transferase	NA	NA	NA	NA
AUL03472.1\|1038296_1038845_-	damage-inducible protein DinB	NA	NA	NA	NA
AUL03473.1\|1038863_1039349_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AUL03474.1\|1039526_1040465_+	cytochrome C biogenesis protein	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	5.6e-11	24.1
AUL03475.1\|1040467_1040785_+	MerR family transcriptional regulator	NA	NA	NA	NA
AUL03476.1\|1040830_1041775_+	hypothetical protein	NA	NA	NA	NA
AUL03477.1\|1043455_1044106_+	molybdopterin adenylyltransferase	NA	NA	NA	NA
AUL03478.1\|1044159_1044495_+	hypothetical protein	NA	NA	NA	NA
AUL05965.1\|1044509_1045352_+	peptidase	A0A292GJG6	Xanthomonas_phage	2.6e-15	36.1
AUL03479.1\|1045368_1045650_-	hypothetical protein	NA	NA	NA	NA
AUL03480.1\|1045723_1045987_-	translation initiation factor IF-1	NA	NA	NA	NA
AUL03481.1\|1046230_1047181_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05966.1\|1047479_1048220_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA
AUL03482.1\|1048651_1048975_+	flagellar transcriptional activator FlhD	NA	NA	NA	NA
AUL03483.1\|1049009_1049570_+	transcriptional regulator FlhC	NA	NA	NA	NA
AUL03484.1\|1049690_1050566_+	flagellar motor stator protein MotA	NA	NA	NA	NA
AUL03485.1\|1050578_1051526_+	flagellar motor protein MotB	NA	NA	NA	NA
AUL03486.1\|1051626_1051920_+	two-component system response regulator	NA	NA	NA	NA
AUL03487.1\|1051946_1054004_+	chemotaxis protein CheA	NA	NA	NA	NA
AUL03488.1\|1054018_1054519_+	chemotaxis protein CheW	NA	NA	NA	NA
AUL03489.1\|1054592_1056299_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.4e-12	41.7
AUL03490.1\|1057162_1058215_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA
AUL03491.1\|1058267_1058657_+	two-component system response regulator	Q56AR1	Bacillus_thuringiensis_phage	5.7e-10	33.3
AUL03492.1\|1058665_1059298_+	protein phosphatase CheZ	NA	NA	NA	NA
AUL05967.1\|1059397_1060414_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AUL05968.1\|1061244_1062252_+	aldo/keto reductase	NA	NA	NA	NA
AUL03493.1\|1062248_1063892_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA
AUL03494.1\|1063888_1064776_-	magnesium/cobalt efflux protein	NA	NA	NA	NA
AUL03495.1\|1064916_1065390_-	rRNA maturation RNase YbeY	NA	NA	NA	NA
AUL03496.1\|1065379_1066402_-	phosphate starvation-inducible protein PhoH	A0A0S0MVD6	Pseudomonas_phage	8.7e-50	45.4
AUL03497.1\|1066398_1067826_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
AUL05969.1\|1068763_1069780_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AUL03498.1\|1070112_1071048_-	protein-export membrane protein SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.0e-41	35.5
AUL03499.1\|1071097_1072978_-	protein-export membrane protein SecD	NA	NA	NA	NA
AUL03500.1\|1073044_1073389_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	1.0e-10	40.4
AUL03501.1\|1073533_1074670_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.9e-85	44.4
AUL03502.1\|1074666_1075740_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AUL03503.1\|1075897_1077334_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
AUL05970.1\|1077424_1078066_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
AUL05971.1\|1078401_1079418_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

1157520 : 1219641

Erysipelothrix_phage(33.33%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL03556.1\|1157520_1158423_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03557.1\|1158569_1159193_-	fimbrial protein	NA	NA	NA	NA
AUL03558.1\|1159366_1161649_-	NADP-dependent malic enzyme	NA	NA	NA	NA
AUL03559.1\|1161803_1164500_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA
AUL03560.1\|1164625_1165114_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AUL03561.1\|1165149_1167012_+	oligopeptide transporter, OPT family	NA	NA	NA	NA
AUL03562.1\|1166990_1167200_+	hypothetical protein	NA	NA	NA	NA
AUL03563.1\|1167524_1170395_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
AUL03564.1\|1170440_1171655_+	dihydrolipoamide succinyltransferase	NA	NA	NA	NA
AUL03565.1\|1171884_1173312_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.1e-41	28.1
AUL03566.1\|1173409_1174501_+	cell division protein ZapE	NA	NA	NA	NA
AUL03567.1\|1174513_1175272_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AUL03568.1\|1175359_1176262_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUL03569.1\|1176258_1177209_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03570.1\|1177338_1178322_-	LacI family transcriptional regulator	NA	NA	NA	NA
AUL03571.1\|1178376_1179099_-	short-chain dehydrogenase	NA	NA	NA	NA
AUL03572.1\|1180577_1181933_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
AUL03573.1\|1182013_1184389_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
AUL03574.1\|1184553_1186629_+	helicase	A0A127AW80	Bacillus_phage	2.4e-75	30.0
AUL05977.1\|1186690_1187485_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AUL03575.1\|1187592_1188555_+	RNA pseudouridine synthase	NA	NA	NA	NA
AUL03576.1\|1188542_1189298_+	hypothetical protein	NA	NA	NA	NA
AUL03577.1\|1189405_1191043_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA
AUL03578.1\|1191110_1191848_+	beta-ketoacyl-ACP reductase	NA	NA	NA	NA
AUL03579.1\|1191950_1192526_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA
AUL05978.1\|1193266_1193581_+	periplasmic lipoprotein involved in iron transport	NA	NA	NA	NA
AUL03580.1\|1193596_1194442_+	FTR1 family iron permease	NA	NA	NA	NA
AUL03581.1\|1194480_1195860_+	hypothetical protein	NA	NA	NA	NA
AUL03582.1\|1195937_1196819_+	phenazine biosynthesis protein PhzC/PhzF	NA	NA	NA	NA
AUL03583.1\|1196965_1197868_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03584.1\|1197864_1198275_-	lactoylglutathione lyase	NA	NA	NA	NA
AUL03585.1\|1198382_1199237_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA
AUL03586.1\|1200236_1201361_-	racemase	Q6A202	Oenococcus_phage	1.5e-31	28.3
AUL03587.1\|1201466_1202345_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUL03588.1\|1202469_1203249_+	short-chain dehydrogenase	NA	NA	NA	NA
AUL03589.1\|1203402_1204824_+	MFS transporter	NA	NA	NA	NA
AUL03590.1\|1205258_1206956_+	sodium:proline symporter	NA	NA	NA	NA
AUL03591.1\|1206984_1207107_+	hypothetical protein	NA	NA	NA	NA
AUL05979.1\|1207182_1208124_-	LD-carboxypeptidase	NA	NA	NA	NA
AUL03592.1\|1208450_1209197_+	hypothetical protein	NA	NA	NA	NA
AUL03593.1\|1209204_1210131_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL03594.1\|1210252_1211170_+	oxidoreductase	NA	NA	NA	NA
AUL03595.1\|1211209_1212163_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL03596.1\|1212187_1212766_+	hypothetical protein	NA	NA	NA	NA
AUL03597.1\|1214439_1215048_+	hypothetical protein	NA	NA	NA	NA
AUL03598.1\|1215125_1215479_-	hypothetical protein	NA	NA	NA	NA
AUL05980.1\|1215562_1216495_-	succinylglutamate desuccinylase	NA	NA	NA	NA
AUL03599.1\|1216802_1217705_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03600.1\|1217791_1218742_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03601.1\|1218738_1219641_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1292650 : 1329415

Salmonella_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL03652.1\|1292650_1293601_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03653.1\|1293580_1294162_-	hypothetical protein	NA	NA	NA	NA
AUL03654.1\|1294222_1295950_-	sodium-independent anion transporter	NA	NA	NA	NA
AUL03655.1\|1296061_1297420_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
AUL03656.1\|1297712_1298663_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03657.1\|1298703_1299774_+	hypothetical protein	NA	NA	NA	NA
AUL05986.1\|1299796_1300675_-	hypothetical protein	NA	NA	NA	NA
AUL03658.1\|1300846_1301818_+	AraC family transcriptional regulator	NA	NA	NA	NA
AUL03659.1\|1301980_1302823_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL03660.1\|1302984_1303665_+	anti-sigma factor	NA	NA	NA	NA
AUL03661.1\|1303658_1304828_+	amine oxidase	NA	NA	NA	NA
AUL03662.1\|1304824_1305856_+	alcohol dehydrogenase	A0A2K9L339	Tupanvirus	1.8e-26	27.8
AUL03663.1\|1305923_1307141_+	MFS transporter	NA	NA	NA	NA
AUL03664.1\|1307175_1308708_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUL03665.1\|1308788_1309412_+	transcriptional regulator	NA	NA	NA	NA
AUL03666.1\|1309442_1310054_+	RhtB family transporter	NA	NA	NA	NA
AUL03667.1\|1310089_1310560_+	histidine kinase	NA	NA	NA	NA
AUL03668.1\|1310734_1310983_+	hypothetical protein	NA	NA	NA	NA
AUL03669.1\|1310990_1311995_+	peptidase M20	NA	NA	NA	NA
AUL03670.1\|1312031_1313546_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL03671.1\|1313549_1314509_+	ABC transporter	NA	NA	NA	NA
AUL03672.1\|1314537_1315341_+	peptide ABC transporter permease	NA	NA	NA	NA
AUL03673.1\|1315342_1316977_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-15	31.1
AUL03674.1\|1317060_1318122_+	LacI family transcriptional regulator	NA	NA	NA	NA
AUL03675.1\|1318593_1319118_+	DNA-binding protein	J9Q7G7	Salmonella_phage	6.5e-09	32.9
AUL03676.1\|1319581_1320484_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03677.1\|1320480_1321515_-	hydrolase	NA	NA	NA	NA
AUL03678.1\|1321623_1322262_+	hypothetical protein	NA	NA	NA	NA
AUL03679.1\|1322556_1322784_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AUL03680.1\|1322906_1323620_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AUL03681.1\|1323864_1324815_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03682.1\|1324954_1325200_+	hypothetical protein	NA	NA	NA	NA
AUL03683.1\|1325314_1326763_-	2-aminoadipate aminotransferase	NA	NA	NA	NA
AUL03684.1\|1326873_1327824_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03685.1\|1327820_1328270_-	deoxyuridine 5'-triphosphate nucleotidohydrolase	S4TNT3	Salmonella_phage	3.7e-45	67.2
AUL03686.1\|1328512_1329415_+\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1418051 : 1472261

Salmonella_phage(22.22%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL03762.1\|1418051_1419002_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03763.1\|1419168_1419522_+	cytochrome C	NA	NA	NA	NA
AUL03764.1\|1419534_1419897_+	cytochrome	NA	NA	NA	NA
AUL03765.1\|1419938_1420364_-	hypothetical protein	NA	NA	NA	NA
AUL03766.1\|1420566_1421823_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.2e-11	64.8
AUL03767.1\|1422021_1423002_+	hypothetical protein	NA	NA	NA	NA
AUL03768.1\|1423151_1424393_+	hypothetical protein	NA	NA	NA	NA
AUL03769.1\|1424491_1425442_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03770.1\|1425450_1426146_-	two-component system response regulator KdpE	NA	NA	NA	NA
AUL03771.1\|1428966_1429566_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA
AUL03772.1\|1429576_1431742_-	potassium-transporting ATPase subunit B	M1HBF8	Paramecium_bursaria_Chlorella_virus	1.2e-24	27.1
AUL03773.1\|1431765_1433550_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
AUL03774.1\|1433549_1433639_-	potassium-transporting ATPase subunit F	NA	NA	NA	NA
AUL03775.1\|1434333_1434606_+	hypothetical protein	NA	NA	NA	NA
AUL03776.1\|1434605_1436672_+	cation acetate symporter	NA	NA	NA	NA
AUL03777.1\|1436668_1437571_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03778.1\|1437717_1438620_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03779.1\|1438783_1439116_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
AUL03780.1\|1439112_1439799_-	DNA mismatch repair protein MutS	NA	NA	NA	NA
AUL03781.1\|1439785_1440745_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.1e-57	40.2
AUL03782.1\|1440777_1443147_+	cell division protein FtsK	S5VNE3	Mycobacterium_phage	7.6e-81	48.0
AUL03783.1\|1443146_1443779_+	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
AUL03784.1\|1443880_1445221_+	recombination factor protein RarA	G3MBE0	Bacillus_virus	1.6e-75	38.9
AUL03785.1\|1445267_1446623_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.6e-83	47.5
AUL03786.1\|1446913_1447150_+	hypothetical protein	NA	NA	NA	NA
AUL03787.1\|1447337_1447655_-	virulence factor	NA	NA	NA	NA
AUL03788.1\|1447927_1448443_-	hypothetical protein	T1SAR8	Salmonella_phage	5.1e-06	44.6
AUL03789.1\|1448536_1448698_+	hypothetical protein	NA	NA	NA	NA
AUL03790.1\|1448713_1449469_-	GGDEF domain-containing protein	NA	NA	NA	NA
AUL03791.1\|1449807_1450014_+	hypothetical protein	NA	NA	NA	NA
AUL03792.1\|1450021_1450681_-	antibiotic resistance protein	NA	NA	NA	NA
AUL03793.1\|1450975_1453180_-	porin	NA	NA	NA	NA
AUL03794.1\|1453290_1454514_-	multidrug transporter	S4TR35	Salmonella_phage	9.8e-24	29.4
AUL03795.1\|1454636_1455548_-	AraC family transcriptional regulator	NA	NA	NA	NA
AUL03796.1\|1455677_1456871_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA
AUL03797.1\|1456885_1457686_-	siderophore ferric iron reductase	NA	NA	NA	NA
AUL03798.1\|1457682_1459539_-	IucA/IucC family protein	NA	NA	NA	NA
AUL03799.1\|1459535_1460141_-	siderophore biosynthesis protein	NA	NA	NA	NA
AUL03800.1\|1460159_1461545_-	alcaligin biosynthesis protein	NA	NA	NA	NA
AUL03801.1\|1465426_1466200_+	peroxide stress protein YaaA	NA	NA	NA	NA
AUL03802.1\|1466211_1467453_+	hypothetical protein	NA	NA	NA	NA
AUL03803.1\|1469282_1470185_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03804.1\|1470216_1471314_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	3.5e-20	37.3
AUL03805.1\|1471310_1472261_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

1618143 : 1681944

Tetraselmis_virus(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL03926.1\|1618143_1619094_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03927.1\|1619152_1619926_+	short-chain dehydrogenase	NA	NA	NA	NA
AUL03928.1\|1619918_1621475_+	capsular biosynthesis protein	NA	NA	NA	NA
AUL03929.1\|1621471_1622422_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03930.1\|1628193_1628952_-	short-chain dehydrogenase	NA	NA	NA	NA
AUL03931.1\|1628998_1630000_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL03932.1\|1630165_1631134_-	phenol degradation protein meta	NA	NA	NA	NA
AUL03933.1\|1632673_1633642_+	AAA family ATPase	NA	NA	NA	NA
AUL03934.1\|1633650_1634592_+	MoxR protein	NA	NA	NA	NA
AUL06003.1\|1635065_1636076_+	hypothetical protein	NA	NA	NA	NA
AUL06005.1\|1636066_1637581_+	hypothetical protein	NA	NA	NA	NA
AUL03935.1\|1637577_1638924_+	hypothetical protein	NA	NA	NA	NA
AUL06004.1\|1638926_1639961_+	haloacid dehalogenase	NA	NA	NA	NA
AUL03936.1\|1640010_1641636_+	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	2.0e-149	52.2
AUL03937.1\|1641729_1642209_+	hypothetical protein	NA	NA	NA	NA
AUL03938.1\|1642188_1643091_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03939.1\|1643243_1644191_+	hypothetical protein	NA	NA	NA	NA
AUL06006.1\|1644244_1646059_-	histidine kinase	NA	NA	NA	NA
AUL03940.1\|1646051_1646726_-	DNA-binding response regulator	NA	NA	NA	NA
AUL03941.1\|1646855_1649930_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
AUL03942.1\|1649943_1650243_-	transcriptional regulator	NA	NA	NA	NA
AUL06007.1\|1650557_1651181_-	glutathione S-transferase	NA	NA	NA	NA
AUL03943.1\|1651424_1652294_+	2,4-dichlorophenoxyacetate dioxygenase	NA	NA	NA	NA
AUL03944.1\|1652271_1653084_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL03945.1\|1653301_1654228_-	hypothetical protein	NA	NA	NA	NA
AUL03946.1\|1654340_1655120_-	short-chain dehydrogenase	NA	NA	NA	NA
AUL03947.1\|1655110_1656307_-	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA
AUL03948.1\|1656337_1657288_-	hydrolase	NA	NA	NA	NA
AUL03949.1\|1657509_1658199_+	short-chain dehydrogenase	NA	NA	NA	NA
AUL03950.1\|1658263_1659019_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AUL03951.1\|1659070_1660063_+	MFS transporter	NA	NA	NA	NA
AUL03952.1\|1660072_1661026_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL03953.1\|1661141_1662104_+	hypothetical protein	NA	NA	NA	NA
AUL03954.1\|1663505_1663934_+	hypothetical protein	NA	NA	NA	NA
AUL03955.1\|1663930_1664881_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03956.1\|1664989_1665178_+	hypothetical protein	NA	NA	NA	NA
AUL03957.1\|1666334_1667522_-	hypothetical protein	NA	NA	NA	NA
AUL06008.1\|1667525_1667876_-	transcriptional regulator	NA	NA	NA	NA
AUL06009.1\|1669624_1670596_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL03958.1\|1670609_1671323_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA
AUL03959.1\|1671327_1672245_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL03960.1\|1672351_1672648_+	hypothetical protein	NA	NA	NA	NA
AUL03961.1\|1672746_1673697_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03962.1\|1674855_1677789_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA
AUL03963.1\|1677788_1678133_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA
AUL03964.1\|1678129_1679758_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA
AUL03965.1\|1679757_1680234_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA
AUL03966.1\|1680233_1680515_+	K+/H+ antiporter subunit F	NA	NA	NA	NA
AUL03967.1\|1680511_1680838_+	cation:proton antiporter	NA	NA	NA	NA
AUL03968.1\|1680993_1681944_+\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

1695355 : 1787324

Brevibacillus_phage(14.29%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL03980.1\|1695355_1696306_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03981.1\|1696329_1696794_-\|tRNA	glutamyl-tRNA amidotransferase	A0A0K2FLI9	Brevibacillus_phage	3.9e-05	32.4
AUL03982.1\|1696940_1698149_+	nitric oxide dioxygenase	NA	NA	NA	NA
AUL03983.1\|1698192_1698630_+	BadM/Rrf2 family transcriptional regulator	NA	NA	NA	NA
AUL03984.1\|1698748_1700038_+	D-amino acid dehydrogenase small subunit	NA	NA	NA	NA
AUL03985.1\|1702778_1703681_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL03986.1\|1703827_1704844_-	folate-binding protein YgfZ	NA	NA	NA	NA
AUL03987.1\|1705022_1706057_+	aminodeoxychorismate lyase	NA	NA	NA	NA
AUL03988.1\|1706053_1706680_+	dTMP kinase	A0A1L2BX49	Bacteriophage	1.6e-22	35.1
AUL03989.1\|1706676_1707729_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
AUL03990.1\|1707778_1708549_+	DNAase	NA	NA	NA	NA
AUL03991.1\|1708599_1709436_+	hypothetical protein	NA	NA	NA	NA
AUL03992.1\|1709631_1710372_+	IclR family transcriptional regulator	NA	NA	NA	NA
AUL03993.1\|1710446_1711190_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL03994.1\|1711851_1712625_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-31	37.7
AUL03995.1\|1713762_1715052_+	glutamate dehydrogenase	NA	NA	NA	NA
AUL03996.1\|1716662_1717910_-	Zn-dependent hydrolase	NA	NA	NA	NA
AUL03997.1\|1717919_1719629_-	thiamine pyrophosphate-binding protein	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	5.9e-35	27.3
AUL03998.1\|1719625_1720564_-	CoA ester lyase	NA	NA	NA	NA
AUL03999.1\|1720560_1721844_-	C4-dicarboxylate ABC transporter permease	NA	NA	NA	NA
AUL04000.1\|1721847_1722330_-	TRAP transporter small permease protein	NA	NA	NA	NA
AUL04001.1\|1722330_1723317_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04002.1\|1723489_1724209_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUL04003.1\|1724325_1725276_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04004.1\|1728461_1729811_+	amidase	NA	NA	NA	NA
AUL04005.1\|1729868_1730663_+	hypothetical protein	NA	NA	NA	NA
AUL04006.1\|1730796_1731672_+	diguanylate phosphodiesterase	NA	NA	NA	NA
AUL04007.1\|1731715_1735432_-	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	4.2e-33	32.0
AUL04008.1\|1735440_1736070_-	DNA-binding response regulator	NA	NA	NA	NA
AUL04009.1\|1747342_1747780_+	protein fimA	NA	NA	NA	NA
AUL04010.1\|1747939_1748764_+	molecular chaperone	NA	NA	NA	NA
AUL04011.1\|1748826_1751448_+	usher protein	NA	NA	NA	NA
AUL06011.1\|1751461_1752559_+	protein fhaE	NA	NA	NA	NA
AUL04012.1\|1752551_1754306_+	filamentous hemagglutinin	NA	NA	NA	NA
AUL04013.1\|1755623_1756124_-	TRAP transporter small permease protein	NA	NA	NA	NA
AUL06012.1\|1756130_1757105_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04014.1\|1758661_1759153_-	hypothetical protein	NA	NA	NA	NA
AUL04015.1\|1759166_1760132_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04016.1\|1760152_1760854_-	hypothetical protein	NA	NA	NA	NA
AUL04017.1\|1762028_1762541_+	transcriptional regulator	NA	NA	NA	NA
AUL04018.1\|1762619_1766243_+	5-oxoprolinase	NA	NA	NA	NA
AUL04019.1\|1766256_1767288_-	peptidase C45	NA	NA	NA	NA
AUL04020.1\|1768447_1769281_+	mechanosensitive ion channel protein MscS	NA	NA	NA	NA
AUL04021.1\|1769294_1770053_-	IclR family transcriptional regulator	NA	NA	NA	NA
AUL04022.1\|1770214_1771207_+	MFS transporter	NA	NA	NA	NA
AUL04023.1\|1771424_1772168_-	RNA methyltransferase	NA	NA	NA	NA
AUL04024.1\|1772308_1773091_+	inositol monophosphatase	NA	NA	NA	NA
AUL04025.1\|1773217_1774804_+	hypothetical protein	A0A0R6PEZ3	Moraxella_phage	1.9e-35	42.0
AUL04026.1\|1774828_1775692_+	undecaprenyl-diphosphatase	NA	NA	NA	NA
AUL04027.1\|1775899_1776676_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
AUL06013.1\|1776668_1777178_-	cyclophilin	NA	NA	NA	NA
AUL04028.1\|1777306_1777990_-	hypothetical protein	NA	NA	NA	NA
AUL04029.1\|1778229_1779690_+\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	2.5e-34	27.9
AUL04030.1\|1779709_1780354_+	DNA-3-methyladenine glycosylase	NA	NA	NA	NA
AUL04031.1\|1780390_1781356_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
AUL04032.1\|1781454_1782405_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04033.1\|1782551_1783454_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04034.1\|1783514_1784549_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
AUL04035.1\|1784648_1785914_+	aspartate kinase	NA	NA	NA	NA
AUL06014.1\|1786307_1787324_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_13

1832508 : 1904017

Klosneuvirus(22.22%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL04081.1\|1832508_1833459_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04082.1\|1833583_1834393_-	enoyl-CoA hydratase	NA	NA	NA	NA
AUL04083.1\|1834641_1835544_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04084.1\|1836817_1838035_+	hypothetical protein	NA	NA	NA	NA
AUL04085.1\|1838031_1839087_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
AUL04086.1\|1839091_1839994_+	GntR family transcriptional regulator	NA	NA	NA	NA
AUL04087.1\|1840070_1840943_+	MOSC domain-containing protein	NA	NA	NA	NA
AUL04088.1\|1841073_1841442_+	aspartate 1-decarboxylase	NA	NA	NA	NA
AUL04089.1\|1841499_1842546_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
AUL04090.1\|1842741_1843998_+	amino acid dehydrogenase	NA	NA	NA	NA
AUL04091.1\|1844002_1845340_+	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04092.1\|1845489_1846446_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL04093.1\|1847903_1848269_+	hypothetical protein	NA	NA	NA	NA
AUL04094.1\|1848316_1849891_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04095.1\|1849943_1850888_+	peptide ABC transporter	NA	NA	NA	NA
AUL06018.1\|1850815_1851736_+	peptide ABC transporter permease	NA	NA	NA	NA
AUL04096.1\|1851728_1853363_+	microcin ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.2e-18	32.7
AUL04097.1\|1853359_1854715_+	amidase	NA	NA	NA	NA
AUL04098.1\|1855621_1857199_+	hypothetical protein	NA	NA	NA	NA
AUL04099.1\|1857202_1858477_+	hypothetical protein	NA	NA	NA	NA
AUL06019.1\|1858574_1858949_+	hypothetical protein	NA	NA	NA	NA
AUL04100.1\|1860664_1861798_+	general secretion pathway protein	NA	NA	NA	NA
AUL04101.1\|1861835_1862441_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
AUL04102.1\|1862437_1863256_+	hypothetical protein	NA	NA	NA	NA
AUL04103.1\|1863327_1865952_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.7e-81	39.4
AUL04104.1\|1865938_1866193_+	hypothetical protein	NA	NA	NA	NA
AUL04105.1\|1866259_1866841_-	hypothetical protein	NA	NA	NA	NA
AUL04106.1\|1867144_1867405_+	30S ribosomal protein S16	NA	NA	NA	NA
AUL04107.1\|1867570_1868194_+	ribosome maturation factor RimM	NA	NA	NA	NA
AUL04108.1\|1868193_1868967_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AUL04109.1\|1868963_1870172_-	class V aminotransferase	NA	NA	NA	NA
AUL04110.1\|1870197_1870671_-	hypothetical protein	NA	NA	NA	NA
AUL04111.1\|1870744_1871695_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04112.1\|1871793_1872696_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04113.1\|1872842_1874192_-	two-component sensor histidine kinase	NA	NA	NA	NA
AUL04114.1\|1874957_1875713_+	hypothetical protein	NA	NA	NA	NA
AUL04115.1\|1875805_1878688_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.7e-138	37.1
AUL04116.1\|1879010_1879436_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.1e-21	43.2
AUL04117.1\|1879463_1880612_+	23S rRNA (adenine(2503)-C(2))-methyltransferase	NA	NA	NA	NA
AUL04118.1\|1880608_1881115_+	transcriptional regulator	NA	NA	NA	NA
AUL04119.1\|1881130_1882417_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA
AUL06020.1\|1882466_1883762_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
AUL04120.1\|1883763_1884402_+	hypothetical protein	NA	NA	NA	NA
AUL06021.1\|1884407_1885565_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
AUL04121.1\|1885591_1886947_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
AUL04122.1\|1886950_1888021_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	2.5e-15	25.7
AUL04123.1\|1888159_1888396_+	RNA chaperone Hfq	NA	NA	NA	NA
AUL04124.1\|1888483_1889590_+	GTPase HflX	NA	NA	NA	NA
AUL04125.1\|1889555_1890860_+	HflK protein	NA	NA	NA	NA
AUL04126.1\|1890878_1891778_+	HflC protein	NA	NA	NA	NA
AUL04127.1\|1891961_1893119_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
AUL04128.1\|1893195_1894491_+	adenylosuccinate synthase	A0A160ER07	Powai_lake_megavirus	3.0e-63	33.5
AUL04129.1\|1894604_1895144_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AUL04130.1\|1895421_1895634_+	30S ribosomal protein S21	NA	NA	NA	NA
AUL04131.1\|1895653_1897684_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.0e-65	41.9
AUL04132.1\|1898369_1900652_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	3.2e-36	30.1
AUL04133.1\|1901060_1901360_-	hypothetical protein	NA	NA	NA	NA
AUL04134.1\|1901644_1902058_+	transcriptional regulator	A0A222YXG1	Escherichia_phage	3.8e-36	59.0
AUL04135.1\|1902017_1902968_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04136.1\|1903066_1904017_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

1915269 : 1963568

Klosneuvirus(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL04147.1\|1915269_1916172_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04148.1\|1916168_1917443_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	9.6e-14	28.9
AUL04149.1\|1917546_1918740_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
AUL04150.1\|1918736_1919390_+	alpha/beta hydrolase	NA	NA	NA	NA
AUL04151.1\|1919386_1920823_+	dethiobiotin synthase	NA	NA	NA	NA
AUL04152.1\|1920810_1921170_+	CidA/LrgA family protein	NA	NA	NA	NA
AUL04153.1\|1921255_1921906_+	hypothetical protein	NA	NA	NA	NA
AUL04154.1\|1922142_1923006_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04155.1\|1923089_1924955_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
AUL06025.1\|1925212_1926733_+	aldehyde dehydrogenase	NA	NA	NA	NA
AUL04156.1\|1926820_1927471_-	NAD(P)H dehydrogenase	NA	NA	NA	NA
AUL04157.1\|1928419_1929715_+	hypothetical protein	NA	NA	NA	NA
AUL04158.1\|1929736_1930621_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL06026.1\|1930719_1931595_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
AUL04159.1\|1931584_1931941_-	RNA signal recognition particle	NA	NA	NA	NA
AUL04160.1\|1932071_1933046_+	AraC family transcriptional regulator	NA	NA	NA	NA
AUL04161.1\|1933175_1933355_-	DUF3008 domain-containing protein	NA	NA	NA	NA
AUL04162.1\|1933497_1933977_+	hypothetical protein	NA	NA	NA	NA
AUL04163.1\|1933987_1934824_-	alpha/beta hydrolase	NA	NA	NA	NA
AUL04164.1\|1934936_1935308_+	transcriptional regulator	NA	NA	NA	NA
AUL04165.1\|1935304_1935856_+	ATPase	NA	NA	NA	NA
AUL04166.1\|1935871_1937563_-	sodium-independent anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	5.0e-42	27.3
AUL04167.1\|1937611_1938292_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUL04168.1\|1938539_1939004_-	hypothetical protein	NA	NA	NA	NA
AUL04169.1\|1939173_1940103_+	hypothetical protein	NA	NA	NA	NA
AUL06027.1\|1940115_1940709_-	hypothetical protein	NA	NA	NA	NA
AUL04170.1\|1940836_1942654_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-37	27.4
AUL04171.1\|1942737_1943688_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL06028.1\|1943786_1944266_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AUL04172.1\|1944388_1945291_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04173.1\|1945309_1945657_-	aldehyde-activating protein	NA	NA	NA	NA
AUL04174.1\|1945685_1947125_-	MFS transporter	A0A0M3UL24	Mycobacterium_phage	7.4e-55	37.4
AUL04175.1\|1947143_1947539_-	hypothetical protein	NA	NA	NA	NA
AUL04176.1\|1947713_1948322_+	peptidase S16	NA	NA	NA	NA
AUL04177.1\|1948334_1949153_+	hypothetical protein	A0A1B1INV8	uncultured_Mediterranean_phage	2.3e-16	28.8
AUL04178.1\|1949104_1950079_-	AraC family transcriptional regulator	NA	NA	NA	NA
AUL04179.1\|1950107_1951169_-	hypothetical protein	NA	NA	NA	NA
AUL04180.1\|1951165_1953382_-	aldehyde oxidase	NA	NA	NA	NA
AUL04181.1\|1953395_1953854_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
AUL04182.1\|1954011_1954356_-	hypothetical protein	NA	NA	NA	NA
AUL04183.1\|1954512_1955418_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUL06029.1\|1955504_1956518_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
AUL06030.1\|1958497_1959514_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AUL04184.1\|1959656_1961009_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	2.9e-45	27.6
AUL04185.1\|1961183_1961480_+	hypothetical protein	NA	NA	NA	NA
AUL04186.1\|1961626_1962631_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04187.1\|1962665_1963568_+\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_15

1975064 : 2039384

Vibrio_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL04200.1\|1975064_1976015_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04201.1\|1976236_1977187_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04202.1\|1977285_1978251_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04203.1\|1978388_1979288_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL04204.1\|1979815_1981642_+	DUF3604 domain-containing protein	NA	NA	NA	NA
AUL04205.1\|1981999_1983370_+	hypothetical protein	NA	NA	NA	NA
AUL04206.1\|1983380_1984577_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA
AUL04207.1\|1984649_1985969_+	acyl--CoA ligase	NA	NA	NA	NA
AUL04208.1\|1985965_1986841_+	esterase	NA	NA	NA	NA
AUL04209.1\|1986871_1988020_-	carnitine dehydratase	NA	NA	NA	NA
AUL04210.1\|1988037_1988352_-	2Fe-2S ferredoxin	NA	NA	NA	NA
AUL04211.1\|1988373_1989096_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AUL04212.1\|1989095_1989914_-	enoyl-CoA hydratase	NA	NA	NA	NA
AUL04213.1\|1989918_1990446_-	ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA
AUL04214.1\|1990451_1991708_-	ring-hydroxylating oxygenase subunit alpha	NA	NA	NA	NA
AUL04215.1\|1992066_1993206_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04216.1\|1993283_1994156_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AUL04217.1\|1995074_1995977_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04218.1\|1995936_1996572_-	hypothetical protein	NA	NA	NA	NA
AUL04219.1\|1996931_1998254_-	isocitrate lyase	NA	NA	NA	NA
AUL04220.1\|1998572_1999394_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	4.1e-42	37.6
AUL04221.1\|1999329_1999671_-	hypothetical protein	NA	NA	NA	NA
AUL04222.1\|1999680_2000649_-	MFS transporter	NA	NA	NA	NA
AUL04223.1\|2000818_2001391_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
AUL04224.1\|2001430_2003260_-	excinuclease ABC subunit C	NA	NA	NA	NA
AUL04225.1\|2003222_2004281_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA
AUL04226.1\|2004318_2004780_-	holo-ACP synthase	NA	NA	NA	NA
AUL04227.1\|2004864_2005611_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
AUL04228.1\|2007101_2010332_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
AUL04229.1\|2010398_2011730_-	efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
AUL04230.1\|2011982_2012357_-	DNA-binding protein	NA	NA	NA	NA
AUL04231.1\|2012459_2013638_-	hypothetical protein	NA	NA	NA	NA
AUL04232.1\|2013648_2014239_-	hypothetical protein	NA	NA	NA	NA
AUL06032.1\|2014349_2015156_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA
AUL04233.1\|2015181_2015976_-	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	5.1e-05	25.7
AUL04234.1\|2016976_2017951_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04235.1\|2018109_2018622_-	superoxide dismutase	Q9MC02	Salmonella_phage	1.8e-43	52.3
AUL04236.1\|2018778_2019750_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04237.1\|2021493_2022300_-	enoyl-CoA hydratase	NA	NA	NA	NA
AUL04238.1\|2022296_2023598_-	malonyl-CoA decarboxylase	NA	NA	NA	NA
AUL04239.1\|2023548_2024313_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUL04240.1\|2024426_2025197_-	spermidine synthase	NA	NA	NA	NA
AUL04241.1\|2025281_2026469_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA
AUL04242.1\|2026541_2026916_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA
AUL04243.1\|2027016_2028279_-	glycine/betaine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.8e-28	36.6
AUL04244.1\|2028275_2029133_-	ABC transporter permease	NA	NA	NA	NA
AUL04245.1\|2029305_2030307_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04246.1\|2030758_2031661_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL06033.1\|2033272_2034424_+	Bcr/CflA family drug resistance efflux transporter	NA	NA	NA	NA
AUL04247.1\|2034792_2035029_+	50S ribosomal protein L28	NA	NA	NA	NA
AUL04248.1\|2035092_2035260_+	50S ribosomal protein L33	NA	NA	NA	NA
AUL04249.1\|2035373_2037179_-	sulfate transporter	A0A2H4J153	uncultured_Caudovirales_phage	2.2e-19	27.5
AUL04250.1\|2037432_2038335_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04251.1\|2038481_2039384_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_16

2170964 : 2220615

uncultured_Mediterranean_phage(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL04346.1\|2170964_2171915_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL06044.1\|2172013_2173411_-	rRNA methyltransferase	NA	NA	NA	NA
AUL04347.1\|2174067_2175033_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA
AUL04348.1\|2175022_2177884_+\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	1.0e-71	25.5
AUL04349.1\|2177886_2178393_+	signal peptidase II	NA	NA	NA	NA
AUL04350.1\|2178497_2179706_+	phosphopantothenate synthase	Q9HH70	Methanothermobacter_phage	3.8e-36	30.0
AUL04351.1\|2179707_2180646_-	hypothetical protein	NA	NA	NA	NA
AUL04352.1\|2180807_2181281_+	AsnC family transcriptional regulator	NA	NA	NA	NA
AUL04353.1\|2181277_2182228_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04354.1\|2182338_2182779_-	hypothetical protein	NA	NA	NA	NA
AUL04355.1\|2182907_2184137_-	lytic transglycosylase	NA	NA	NA	NA
AUL04356.1\|2184175_2184997_-	hypothetical protein	NA	NA	NA	NA
AUL04357.1\|2185050_2186202_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AUL04358.1\|2186293_2186764_-	hypothetical protein	NA	NA	NA	NA
AUL04359.1\|2189332_2191882_+	cyanophycin synthetase	NA	NA	NA	NA
AUL04360.1\|2191952_2194526_+	cyanophycin synthetase	NA	NA	NA	NA
AUL04361.1\|2194791_2194992_+	general stress protein CsbD	NA	NA	NA	NA
AUL04362.1\|2195023_2195185_+	DUF1328 domain-containing protein	NA	NA	NA	NA
AUL04363.1\|2195242_2195581_+	phospholipid-binding protein	NA	NA	NA	NA
AUL04364.1\|2195729_2196632_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04365.1\|2197453_2198122_+	arylesterase	NA	NA	NA	NA
AUL06045.1\|2198103_2200059_-	peptidylprolyl isomerase	NA	NA	NA	NA
AUL04366.1\|2200301_2201051_+	glycerophosphodiester phosphodiesterase	A0A2H4PGQ5	Escherichia_phage	1.5e-14	27.8
AUL04367.1\|2201063_2201927_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
AUL04368.1\|2201930_2203346_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
AUL04369.1\|2203479_2204208_-	glutathione peroxidase	A0A1D8KSL1	Synechococcus_phage	9.6e-43	56.8
AUL04370.1\|2204346_2204547_-	heavy metal transporter	NA	NA	NA	NA
AUL04371.1\|2204722_2205121_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
AUL04372.1\|2205144_2206545_-	23S rRNA (uracil(1939)-C(5))-methyltransferase	A0A2K5B251	Erysipelothrix_phage	7.3e-31	26.5
AUL04373.1\|2206663_2207416_-	hypothetical protein	NA	NA	NA	NA
AUL04374.1\|2207704_2208304_-	hypothetical protein	NA	NA	NA	NA
AUL04375.1\|2208408_2209188_-	3'-5' exonuclease	NA	NA	NA	NA
AUL04376.1\|2209184_2210069_-	peptidase	A0A292GJG6	Xanthomonas_phage	4.6e-15	49.5
AUL04377.1\|2210086_2210866_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.8e-32	46.9
AUL04378.1\|2210850_2211609_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-68	51.2
AUL06046.1\|2211746_2212382_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
AUL06047.1\|2212649_2213666_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AUL04379.1\|2213763_2214804_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.1e-91	51.3
AUL04380.1\|2214938_2216231_+	guanine permease	A0A0R6PHV4	Moraxella_phage	1.7e-66	36.0
AUL04381.1\|2217590_2217974_+	thiol reductase thioredoxin	V9SJ74	Achromobacter_phage	8.1e-09	25.8
AUL04382.1\|2217991_2218579_-	thymidylate synthase	A0A1X9I5T8	Streptococcus_phage	4.7e-16	35.8
AUL04383.1\|2218616_2219519_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04384.1\|2219664_2220615_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_17

2577480 : 2643932

uncultured_Caudovirales_phage(40.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL04674.1\|2577480_2578383_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04675.1\|2578398_2578611_+	hypothetical protein	NA	NA	NA	NA
AUL04676.1\|2578752_2579325_+	flagellar basal body protein FliL	NA	NA	NA	NA
AUL04677.1\|2579327_2580338_+	flagellar motor switch protein FliM	NA	NA	NA	NA
AUL04678.1\|2580330_2580831_+	flagellar motor switch protein FliN	NA	NA	NA	NA
AUL04679.1\|2580841_2581183_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA
AUL06074.1\|2581251_2581986_+	flagellar biosynthetic protein FliP	NA	NA	NA	NA
AUL04680.1\|2582002_2582272_+	EscS/YscS/HrcS family type III secretion system export apparatus protein	NA	NA	NA	NA
AUL04681.1\|2582294_2583083_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA
AUL06075.1\|2583129_2584146_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AUL04682.1\|2584362_2585805_-	chemotaxis protein	A0A1B0V854	Salmonella_phage	1.0e-35	41.8
AUL04683.1\|2585983_2587603_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-08	45.3
AUL04684.1\|2587723_2589544_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.4e-11	52.6
AUL04685.1\|2589622_2591155_-	flagellar hook-associated protein 3	NA	NA	NA	NA
AUL04686.1\|2591188_2592835_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA
AUL04687.1\|2592904_2593927_-	flagellar rod assembly protein/muramidase FlgJ	A0A088F6W1	Sulfitobacter_phage	1.9e-12	31.4
AUL04688.1\|2593944_2595078_-	flagellar biosynthesis protein FlgI	NA	NA	NA	NA
AUL04689.1\|2595080_2595770_-	flagellar basal body L-ring protein	NA	NA	NA	NA
AUL04690.1\|2595769_2596555_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA
AUL04691.1\|2596598_2597363_-	flagellar biosynthesis protein FlgF	NA	NA	NA	NA
AUL04692.1\|2597401_2598823_-	flagellar hook protein FlgE	NA	NA	NA	NA
AUL04693.1\|2598888_2599593_-	flagellar basal body rod modification protein	NA	NA	NA	NA
AUL04694.1\|2599640_2600060_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA
AUL04695.1\|2600072_2600480_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA
AUL06076.1\|2600663_2601374_+	flagella basal body P-ring formation protein FlgA	NA	NA	NA	NA
AUL04696.1\|2601500_2601791_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA
AUL04697.1\|2601808_2602291_+	flagellar protein FlgN	NA	NA	NA	NA
AUL04698.1\|2606796_2607951_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA
AUL06077.1\|2608256_2609273_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AUL04699.1\|2609519_2610308_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04700.1\|2610374_2611055_+	cysteine ABC transporter permease	NA	NA	NA	NA
AUL04701.1\|2611051_2611822_+	ATP-binding protein	G9BWD6	Planktothrix_phage	9.8e-30	39.1
AUL04702.1\|2611920_2612871_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04703.1\|2612926_2613844_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
AUL04704.1\|2613854_2615033_-	mandelate racemase	NA	NA	NA	NA
AUL04705.1\|2615052_2616048_-	hypothetical protein	NA	NA	NA	NA
AUL04706.1\|2617636_2618245_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
AUL04707.1\|2618232_2619273_+	LacI family transcriptional regulator	NA	NA	NA	NA
AUL04708.1\|2619290_2620253_-	hypothetical protein	NA	NA	NA	NA
AUL04709.1\|2620249_2621443_-	CoA transferase	NA	NA	NA	NA
AUL04710.1\|2621439_2622237_-	citryl-CoA lyase	NA	NA	NA	NA
AUL04711.1\|2622262_2623249_-	hypothetical protein	NA	NA	NA	NA
AUL04712.1\|2623267_2625307_-	acetyl-CoA synthetase	NA	NA	NA	NA
AUL06078.1\|2625508_2626189_+	GntR family transcriptional regulator	NA	NA	NA	NA
AUL04713.1\|2626202_2627114_-	CoA ester lyase	NA	NA	NA	NA
AUL04714.1\|2627110_2627689_-	NADPH-dependent FMN reductase	NA	NA	NA	NA
AUL04715.1\|2627827_2628733_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUL04716.1\|2628740_2632160_+	nuclease	NA	NA	NA	NA
AUL04717.1\|2632147_2634748_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
AUL04718.1\|2635703_2636336_-	PadR family transcriptional regulator	NA	NA	NA	NA
AUL04719.1\|2636729_2637488_+	hypothetical protein	NA	NA	NA	NA
AUL04720.1\|2637484_2638687_+	cardiolipin synthase B	NA	NA	NA	NA
AUL04721.1\|2638683_2638884_+	hypothetical protein	NA	NA	NA	NA
AUL04722.1\|2638874_2639825_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04723.1\|2640732_2641878_+	hypothetical protein	NA	NA	NA	NA
AUL04724.1\|2641864_2642620_+	alpha/beta hydrolase	NA	NA	NA	NA
AUL04725.1\|2642736_2642916_+	hypothetical protein	NA	NA	NA	NA
AUL04726.1\|2642981_2643932_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_18

2672094 : 2709458

Planktothrix_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL04744.1\|2672094_2672997_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04745.1\|2673143_2674046_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04746.1\|2674138_2674678_+	peroxiredoxin	NA	NA	NA	NA
AUL04747.1\|2674784_2675129_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	3.0e-31	58.4
AUL04748.1\|2675186_2676635_-	carnitine dehydratase	NA	NA	NA	NA
AUL06081.1\|2676822_2677149_-	hypothetical protein	NA	NA	NA	NA
AUL04749.1\|2678785_2679964_+	hypothetical protein	NA	NA	NA	NA
AUL04750.1\|2680046_2680547_+	glutathione peroxidase	Q6VZR0	Canarypox_virus	4.7e-25	38.4
AUL04751.1\|2680656_2681358_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA
AUL04752.1\|2681369_2681834_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AUL04753.1\|2681848_2682124_+	biotin--protein ligase	NA	NA	NA	NA
AUL04754.1\|2682120_2682897_+	lipoate--protein ligase	NA	NA	NA	NA
AUL04755.1\|2682925_2683753_+	hypothetical protein	NA	NA	NA	NA
AUL06082.1\|2683878_2684349_+	hypothetical protein	NA	NA	NA	NA
AUL04756.1\|2684475_2685369_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
AUL04757.1\|2685416_2686598_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA
AUL04758.1\|2686610_2687426_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04759.1\|2687559_2688087_-	hypothetical protein	NA	NA	NA	NA
AUL06083.1\|2688083_2688581_-	hypothetical protein	NA	NA	NA	NA
AUL04760.1\|2688728_2689106_+	hypothetical protein	NA	NA	NA	NA
AUL04761.1\|2689063_2689348_+	hypothetical protein	NA	NA	NA	NA
AUL04762.1\|2689327_2690230_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL06084.1\|2690376_2690988_-	alpha/beta hydrolase	NA	NA	NA	NA
AUL04763.1\|2691222_2692350_+	leucine ABC transporter subunit substrate-binding protein LivK	NA	NA	NA	NA
AUL04764.1\|2692460_2693549_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	2.2e-19	31.2
AUL04765.1\|2693601_2694453_-	glycerol-3-phosphate transporter	NA	NA	NA	NA
AUL04766.1\|2694472_2695354_-	glycerol-3-phosphate transporter permease	NA	NA	NA	NA
AUL06085.1\|2695530_2696844_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04767.1\|2697054_2697888_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
AUL04768.1\|2697884_2698466_+	hypothetical protein	A0A2I7SAW6	Vibrio_phage	9.4e-17	37.3
AUL04769.1\|2698819_2699770_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04770.1\|2699785_2700901_+	leucine ABC transporter subunit substrate-binding protein LivK	NA	NA	NA	NA
AUL04771.1\|2701003_2701930_+	branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA
AUL04772.1\|2701929_2703168_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
AUL04773.1\|2703164_2703932_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	A0A2H4PQG7	Staphylococcus_phage	1.2e-14	26.4
AUL04774.1\|2703932_2704634_+	branched-chain amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-17	30.4
AUL06086.1\|2704715_2705162_-	glutamate racemase	NA	NA	NA	NA
AUL04775.1\|2706051_2706690_+	glutathione S-transferase	NA	NA	NA	NA
AUL04776.1\|2707458_2708409_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04777.1\|2708507_2709458_+\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_19

2814916 : 2872026

Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL04862.1\|2814916_2815819_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL06095.1\|2817028_2817535_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA
AUL04863.1\|2817531_2818296_-	phenylacetate-CoA oxygenase subunit PaaI	NA	NA	NA	NA
AUL04864.1\|2818311_2818596_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA
AUL04865.1\|2818660_2819650_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA
AUL04866.1\|2819821_2820751_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA
AUL04867.1\|2820722_2821409_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA
AUL04868.1\|2821442_2821988_-	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-26	37.7
AUL04869.1\|2822032_2823298_+	peptidase M48	NA	NA	NA	NA
AUL04870.1\|2823294_2824197_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
AUL04871.1\|2825378_2826323_-	peptide ABC transporter	NA	NA	NA	NA
AUL04872.1\|2826417_2827935_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04873.1\|2827976_2829605_-	gamma-glutamyltransferase	NA	NA	NA	NA
AUL04874.1\|2829712_2830594_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUL04875.1\|2830854_2831082_+	hypothetical protein	NA	NA	NA	NA
AUL04876.1\|2833706_2834081_+	endonuclease	F4YXR7	Roseobacter_phage	2.1e-25	54.4
AUL04877.1\|2834105_2834444_-	transcriptional regulator	NA	NA	NA	NA
AUL04878.1\|2834487_2836122_-	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	8.3e-87	36.6
AUL04879.1\|2836160_2837507_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA
AUL06096.1\|2837614_2839036_+	argininosuccinate lyase	NA	NA	NA	NA
AUL04880.1\|2839105_2839690_-	nitroreductase	NA	NA	NA	NA
AUL04881.1\|2839792_2840743_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04882.1\|2840877_2841984_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUL04883.1\|2841994_2843092_+	cyclic pyranopterin phosphate synthase	NA	NA	NA	NA
AUL04884.1\|2843236_2844442_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA
AUL04885.1\|2844448_2844970_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA
AUL06097.1\|2844966_2845449_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA
AUL04886.1\|2845454_2845706_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
AUL04887.1\|2845686_2846172_-	molybdenum cofactor biosynthesis protein C	NA	NA	NA	NA
AUL04888.1\|2846307_2849769_+	hypothetical protein	NA	NA	NA	NA
AUL04889.1\|2849786_2850671_+	carboxymethylenebutenolidase	NA	NA	NA	NA
AUL04890.1\|2850680_2851112_-	hypothetical protein	NA	NA	NA	NA
AUL06098.1\|2851358_2851862_+	peroxiredoxin	M1I839	Pelagibacter_phage	1.8e-24	44.1
AUL04891.1\|2851939_2853340_+	MFS transporter	NA	NA	NA	NA
AUL04892.1\|2853414_2854290_-	hypothetical protein	NA	NA	NA	NA
AUL06099.1\|2854286_2855294_-	biotin synthase BioB	NA	NA	NA	NA
AUL04893.1\|2855761_2856067_+	hypothetical protein	NA	NA	NA	NA
AUL04894.1\|2856157_2856748_+	TetR family transcriptional regulator	NA	NA	NA	NA
AUL06100.1\|2856938_2857955_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AUL04895.1\|2858146_2860483_-	copper-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.2e-124	42.8
AUL04896.1\|2860565_2861000_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
AUL04897.1\|2861146_2862049_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04898.1\|2862147_2863098_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04899.1\|2863094_2863889_-	N-formylglutamate deformylase	NA	NA	NA	NA
AUL04900.1\|2863920_2864625_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AUL04901.1\|2864699_2865500_-	hypothetical protein	NA	NA	NA	NA
AUL04902.1\|2865496_2865904_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
AUL04903.1\|2865900_2866542_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA
AUL06101.1\|2866534_2868535_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA
AUL04904.1\|2869795_2871127_+	arabinose ABC transporter permease	NA	NA	NA	NA
AUL04905.1\|2871123_2872026_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_20

2886548 : 2927906

uncultured_Mediterranean_phage(40.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL04915.1\|2886548_2887451_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04916.1\|2887829_2891651_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
AUL04917.1\|2891807_2892476_-	hypothetical protein	NA	NA	NA	NA
AUL04918.1\|2892480_2894154_-	paraquat-inducible protein B	NA	NA	NA	NA
AUL04919.1\|2894172_2895492_-	paraquat-inducible membrane protein A	NA	NA	NA	NA
AUL04920.1\|2895496_2897812_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	4.1e-164	41.9
AUL06103.1\|2897867_2900036_-	penicillin-binding protein 1C	NA	NA	NA	NA
AUL06104.1\|2900032_2904598_-	alpha-2-macroglobulin	NA	NA	NA	NA
AUL04921.1\|2905311_2905626_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.2e-10	43.8
AUL04922.1\|2905853_2906099_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-20	76.6
AUL04923.1\|2906220_2906712_+	hypothetical protein	A0A1B1IUW8	uncultured_Mediterranean_phage	4.8e-14	42.2
AUL04924.1\|2906811_2908017_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
AUL04925.1\|2908132_2909530_-	chloride channel protein EriC	NA	NA	NA	NA
AUL04926.1\|2910296_2911688_-	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	1.4e-29	32.0
AUL04927.1\|2911855_2912806_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04928.1\|2913086_2913707_+	flagellar motor protein MotA	NA	NA	NA	NA
AUL04929.1\|2913703_2914117_+	biopolymer transporter ExbD	NA	NA	NA	NA
AUL04930.1\|2914113_2915157_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
AUL04931.1\|2915212_2915401_+	hypothetical protein	NA	NA	NA	NA
AUL04932.1\|2915410_2916175_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
AUL04933.1\|2916265_2916922_+	adenylate kinase	NA	NA	NA	NA
AUL04934.1\|2917013_2917772_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
AUL04935.1\|2917797_2919399_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
AUL04936.1\|2919599_2920604_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA
AUL04937.1\|2920704_2920968_+	30S ribosomal protein S20	NA	NA	NA	NA
AUL04938.1\|2921085_2921862_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA
AUL04939.1\|2922452_2923403_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04940.1\|2925786_2926899_-	malate dehydrogenase	NA	NA	NA	NA
AUL04941.1\|2926955_2927906_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_21

2950283 : 3001932

Staphylococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL04965.1\|2950283_2951147_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04966.1\|2951342_2952815_-	magnesium transporter	NA	NA	NA	NA
AUL04967.1\|2952825_2953236_-	acyl-CoA thioesterase	NA	NA	NA	NA
AUL04968.1\|2953299_2954346_-	hypothetical protein	NA	NA	NA	NA
AUL04969.1\|2954452_2955331_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUL04970.1\|2955344_2956541_-	amidohydrolase	NA	NA	NA	NA
AUL04971.1\|2956602_2958294_+	long-chain fatty acid--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	9.4e-33	28.1
AUL04972.1\|2958290_2959193_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04973.1\|2959361_2960258_-	inositol monophosphatase	NA	NA	NA	NA
AUL04974.1\|2962535_2964761_+	glycosyl hydrolase	NA	NA	NA	NA
AUL04975.1\|2964925_2966014_+	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.7e-32	36.4
AUL04976.1\|2965970_2966624_+	DL-methionine transporter permease subunit	NA	NA	NA	NA
AUL04977.1\|2966671_2967469_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04978.1\|2968048_2968951_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04979.1\|2969031_2970180_+	alcohol dehydrogenase	NA	NA	NA	NA
AUL04980.1\|2970236_2971187_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04981.1\|2971285_2971591_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AUL04982.1\|2971619_2972054_-	hypothetical protein	NA	NA	NA	NA
AUL04983.1\|2972055_2973300_-	hypothetical protein	NA	NA	NA	NA
AUL04984.1\|2973296_2974007_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUL06105.1\|2974021_2974933_-	hypothetical protein	NA	NA	NA	NA
AUL04985.1\|2975295_2975700_+	hypothetical protein	NA	NA	NA	NA
AUL04986.1\|2975696_2976155_+	hypothetical protein	NA	NA	NA	NA
AUL04987.1\|2976161_2977070_+	hypothetical protein	NA	NA	NA	NA
AUL06106.1\|2977066_2977933_+	ABC transporter permease	NA	NA	NA	NA
AUL04988.1\|2977919_2978747_+	sugar ABC transporter permease	NA	NA	NA	NA
AUL04989.1\|2978757_2979885_+	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-23	32.3
AUL04990.1\|2982242_2983505_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL04991.1\|2983511_2984264_+	DNA-binding protein	NA	NA	NA	NA
AUL04992.1\|2984315_2984501_-	hypothetical protein	NA	NA	NA	NA
AUL06107.1\|2984776_2985241_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
AUL04993.1\|2985320_2985932_+	3-methyladenine DNA glycosylase	NA	NA	NA	NA
AUL04994.1\|2986076_2988185_+	hypothetical protein	NA	NA	NA	NA
AUL04995.1\|2988181_2989084_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL04996.1\|2989234_2989855_-	TetR family transcriptional regulator	NA	NA	NA	NA
AUL06108.1\|2989958_2990699_+	oxidoreductase	NA	NA	NA	NA
AUL04997.1\|2991833_2992958_-	hypothetical protein	NA	NA	NA	NA
AUL04998.1\|2993003_2993372_-	hypothetical protein	NA	NA	NA	NA
AUL04999.1\|2993613_2994516_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05000.1\|2995599_2996142_-	hypothetical protein	NA	NA	NA	NA
AUL05001.1\|2996527_2997478_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05002.1\|2997474_2998383_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL05003.1\|2998509_2999346_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	1.6e-33	33.3
AUL05004.1\|2999858_3000968_+	porin	NA	NA	NA	NA
AUL05005.1\|3001029_3001932_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_22

3401467 : 3465296

Staphylococcus_phage(11.11%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL05315.1\|3401467_3402370_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05316.1\|3403183_3404278_-	CoA transferase	NA	NA	NA	NA
AUL05317.1\|3404270_3405605_-	CoA ligase	NA	NA	NA	NA
AUL05318.1\|3405558_3406242_-	TetR family transcriptional regulator	NA	NA	NA	NA
AUL05319.1\|3406267_3407431_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
AUL05320.1\|3407427_3408429_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AUL05321.1\|3408428_3409301_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AUL05322.1\|3409297_3410047_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-09	27.8
AUL05323.1\|3410043_3410835_-	ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	1.7e-08	29.4
AUL05324.1\|3410831_3411971_-	ABC transporter	NA	NA	NA	NA
AUL05325.1\|3412246_3413032_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
AUL05326.1\|3413065_3413848_+	enoyl-CoA hydratase	NA	NA	NA	NA
AUL05327.1\|3413851_3414241_+	DNA-binding protein	NA	NA	NA	NA
AUL05328.1\|3415380_3416244_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA
AUL05329.1\|3416279_3417368_+	hypothetical protein	NA	NA	NA	NA
AUL05330.1\|3418667_3421646_+	hypothetical protein	NA	NA	NA	NA
AUL05331.1\|3422572_3423451_+	fatty acid desaturase	NA	NA	NA	NA
AUL05332.1\|3423486_3423819_+	hypothetical protein	NA	NA	NA	NA
AUL05333.1\|3423797_3425318_+	hypothetical protein	NA	NA	NA	NA
AUL05334.1\|3425399_3426350_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05335.1\|3426346_3426814_-	ribonuclease HI	J9Q745	Salmonella_phage	5.6e-36	50.7
AUL05336.1\|3426856_3427627_-	SAM-dependent methyltransferase	NA	NA	NA	NA
AUL05337.1\|3427647_3428448_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
AUL05338.1\|3429961_3430747_+	enoyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA
AUL06129.1\|3430986_3432003_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AUL05339.1\|3432110_3432503_-	osmotically inducible protein OsmC	NA	NA	NA	NA
AUL05340.1\|3432640_3433321_+	hypothetical protein	NA	NA	NA	NA
AUL06130.1\|3433325_3434297_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL05341.1\|3434392_3435295_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05342.1\|3436847_3437549_+	two-component system response regulator OmpR	W8CYM9	Bacillus_phage	5.6e-32	36.6
AUL05343.1\|3437548_3438973_+	ATPase	NA	NA	NA	NA
AUL05344.1\|3440042_3441383_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
AUL05345.1\|3441498_3443262_+\|tRNA	glutamine--tRNA ligase	A0A222YZ70	Escherichia_phage	5.0e-162	50.0
AUL05346.1\|3443373_3444252_+	septum site-determining protein MinC	NA	NA	NA	NA
AUL05347.1\|3444364_3445180_+	septum site-determining protein MinD	NA	NA	NA	NA
AUL05348.1\|3445183_3445435_+	cell division topological specificity factor MinE	NA	NA	NA	NA
AUL06131.1\|3445519_3446536_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AUL05349.1\|3446866_3447088_-	hypothetical protein	NA	NA	NA	NA
AUL05350.1\|3447733_3449353_-	energy-dependent translational throttle protein EttA	A0A2K9L3Z8	Tupanvirus	5.4e-38	28.0
AUL06132.1\|3449447_3450314_-	EamA family transporter	NA	NA	NA	NA
AUL05351.1\|3450862_3452071_-	ABC transporter permease	NA	NA	NA	NA
AUL05352.1\|3452150_3453722_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL05353.1\|3453839_3454775_-	glycosyl transferase	NA	NA	NA	NA
AUL05354.1\|3454963_3455908_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	8.4e-07	23.2
AUL05355.1\|3455976_3456147_-	hypothetical protein	NA	NA	NA	NA
AUL05356.1\|3456475_3462193_+	excinuclease ABC subunit A	A0A1B1IVR3	uncultured_Mediterranean_phage	1.0e-195	39.5
AUL05357.1\|3462198_3463326_+	aminodeoxychorismate synthase, component I	S4VT78	Pandoravirus	3.8e-38	37.8
AUL05358.1\|3463381_3464008_+	aminotransferase	NA	NA	NA	NA
AUL06133.1\|3464279_3465296_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_23

3469710 : 3587549

105

Acinetobacter_phage(22.22%)

transposase,tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL05362.1\|3469710_3470583_-\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
AUL05363.1\|3470932_3472072_+	MFS transporter	NA	NA	NA	NA
AUL05364.1\|3472068_3472728_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
AUL05365.1\|3472799_3473432_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
AUL05366.1\|3473461_3473980_+	flavin reductase	NA	NA	NA	NA
AUL05367.1\|3473990_3475100_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
AUL05368.1\|3475146_3476001_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
AUL05369.1\|3476002_3476905_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL05370.1\|3478127_3479078_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05371.1\|3479174_3480308_-	hypothetical protein	NA	NA	NA	NA
AUL05372.1\|3480344_3480593_-	hypothetical protein	NA	NA	NA	NA
AUL05373.1\|3480832_3481822_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05374.1\|3481997_3482786_-	indole-3-glycerol-phosphate synthase	A0A0P0IR83	Acinetobacter_phage	5.1e-66	53.0
AUL05375.1\|3482782_3483814_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	7.4e-73	42.7
AUL05376.1\|3483832_3484396_-	anthranilate/aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.1e-65	62.1
AUL05377.1\|3484450_3485971_-	anthranilate synthase component I	S4VT78	Pandoravirus	9.0e-43	32.1
AUL05378.1\|3486234_3486939_-	phosphoglycolate phosphatase	NA	NA	NA	NA
AUL05379.1\|3486946_3487675_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
AUL05380.1\|3487789_3488164_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
AUL05381.1\|3488206_3489496_+	hypothetical protein	NA	NA	NA	NA
AUL05382.1\|3489492_3490662_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA
AUL05383.1\|3490688_3491498_+	disulfide bond formation protein DsbC	NA	NA	NA	NA
AUL05384.1\|3491557_3492493_+	hydroxyacid dehydrogenase	A0A1J0F959	Only_Syngen_Nebraska_virus	6.4e-15	27.7
AUL05385.1\|3492505_3493456_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05386.1\|3493554_3494517_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	4.6e-93	64.5
AUL05387.1\|3494548_3494908_-	dihydroneopterin aldolase	NA	NA	NA	NA
AUL05388.1\|3495032_3495935_+	oxidoreductase	G3MA85	Bacillus_virus	1.9e-08	24.0
AUL06135.1\|3495936_3497703_-	peptidase M61	NA	NA	NA	NA
AUL05389.1\|3497743_3498520_+	enoyl-CoA hydratase	NA	NA	NA	NA
AUL05390.1\|3499843_3500746_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05391.1\|3500960_3501374_+	hypothetical protein	NA	NA	NA	NA
AUL06136.1\|3501645_3501966_+	ABC transporter permease	NA	NA	NA	NA
AUL05392.1\|3502038_3502920_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
AUL05393.1\|3503036_3503279_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA
AUL05394.1\|3503416_3503887_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
AUL05395.1\|3503899_3504439_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
AUL05396.1\|3504473_3506015_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
AUL05397.1\|3506113_3507019_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
AUL05398.1\|3507061_3508462_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
AUL05399.1\|3508471_3508894_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
AUL06137.1\|3509076_3509961_+	hypothetical protein	NA	NA	NA	NA
AUL05400.1\|3510036_3511113_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
AUL05401.1\|3511419_3513522_+	primosomal protein N'	NA	NA	NA	NA
AUL05402.1\|3513564_3515634_+	ATP-dependent DNA helicase Rep	A7KV33	Bacillus_phage	2.6e-101	37.3
AUL05403.1\|3515732_3516683_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05404.1\|3516811_3517945_-	peptidase	NA	NA	NA	NA
AUL05405.1\|3517988_3518894_-	alpha/beta hydrolase	NA	NA	NA	NA
AUL05406.1\|3520593_3521514_-	peptide ABC transporter permease	NA	NA	NA	NA
AUL05407.1\|3521521_3522499_-	ABC transporter permease	NA	NA	NA	NA
AUL05408.1\|3522557_3523517_-	succinylglutamate desuccinylase	NA	NA	NA	NA
AUL05409.1\|3525566_3525803_-	hypothetical protein	NA	NA	NA	NA
AUL05410.1\|3525929_3526793_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
AUL05411.1\|3526881_3527703_+	enoyl-CoA hydratase	NA	NA	NA	NA
AUL05412.1\|3527782_3528520_-	enoyl-CoA hydratase	NA	NA	NA	NA
AUL05413.1\|3528516_3529509_-	2-nitropropane dioxygenase	NA	NA	NA	NA
AUL06138.1\|3529661_3530285_+	TetR family transcriptional regulator	NA	NA	NA	NA
AUL05414.1\|3530329_3531478_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
AUL05415.1\|3533849_3534752_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05416.1\|3535092_3536043_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05417.1\|3536188_3537091_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05418.1\|3537387_3537885_+	hypothetical protein	NA	NA	NA	NA
AUL05419.1\|3537927_3539703_+	hypothetical protein	NA	NA	NA	NA
AUL05420.1\|3539710_3540577_+	copper resistance protein	NA	NA	NA	NA
AUL05421.1\|3540583_3541309_-	enoyl-CoA hydratase	NA	NA	NA	NA
AUL05422.1\|3541478_3541709_+	hypothetical protein	NA	NA	NA	NA
AUL05423.1\|3541773_3541968_+	hypothetical protein	NA	NA	NA	NA
AUL05424.1\|3542487_3543258_-	IclR family transcriptional regulator	NA	NA	NA	NA
AUL05425.1\|3543571_3544162_+	cysteine dioxygenase	NA	NA	NA	NA
AUL05426.1\|3544195_3545524_-	amidase	NA	NA	NA	NA
AUL05427.1\|3545598_3546744_-	transporter	NA	NA	NA	NA
AUL05428.1\|3546855_3547854_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05429.1\|3547816_3548251_+	carbon monoxide dehydrogenase	NA	NA	NA	NA
AUL05430.1\|3549766_3550651_+	EamA family transporter	NA	NA	NA	NA
AUL05431.1\|3550647_3551853_-	cardiolipin synthase B	NA	NA	NA	NA
AUL05432.1\|3551849_3552710_-	endonuclease	NA	NA	NA	NA
AUL05433.1\|3552822_3554613_-\|tRNA	aspartate--tRNA ligase	A0A1V0SAC0	Catovirus	6.5e-08	25.5
AUL06139.1\|3554653_3555298_-	hypothetical protein	A0A2I7S9X1	Vibrio_phage	8.5e-11	28.4
AUL05434.1\|3555319_3555628_-	FmdB family transcriptional regulator	NA	NA	NA	NA
AUL06140.1\|3555793_3557080_-	hypothetical protein	NA	NA	NA	NA
AUL05435.1\|3557206_3558466_-\|holin	choline dehydrogenase	A0A2I2L3D3	Orpheovirus	6.1e-13	27.6
AUL05436.1\|3558513_3559464_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05437.1\|3561415_3562630_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA
AUL05438.1\|3562735_3563725_+	D-arabinose 5-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.3e-38	37.7
AUL05439.1\|3563721_3564330_+	phenylphosphate carboxylase subunit delta	E3T535	Cafeteria_roenbergensis_virus	5.2e-10	26.1
AUL05440.1\|3564342_3564972_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
AUL05441.1\|3564968_3565589_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
AUL05442.1\|3565620_3566412_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	9.5e-20	27.4
AUL05443.1\|3566765_3566987_+	ribosomal subunit interface protein	NA	NA	NA	NA
AUL05444.1\|3567263_3567719_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
AUL05445.1\|3567737_3568664_+	HPr kinase/phosphorylase	NA	NA	NA	NA
AUL05446.1\|3568717_3570004_-	alcohol dehydrogenase	NA	NA	NA	NA
AUL05447.1\|3570934_3571807_+	RNase adaptor protein RapZ	A0A1P8D5W0	Corynebacterium_phage	2.4e-08	34.5
AUL05448.1\|3571803_3572754_+	hypothetical protein	F5B3X9	Synechococcus_phage	6.9e-17	47.2
AUL05449.1\|3572899_3573802_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05450.1\|3574262_3574682_-	hypothetical protein	NA	NA	NA	NA
AUL05451.1\|3574668_3577050_-	dehydrogenase	NA	NA	NA	NA
AUL05452.1\|3577042_3577552_-	4-hydroxybenzoyl-CoA reductase subunit gamma	A0A0P0IVM8	Acinetobacter_phage	8.8e-19	37.3
AUL05453.1\|3578434_3579430_-	4,5-dihydroxyphthalate decarboxylase	NA	NA	NA	NA
AUL05454.1\|3580680_3581241_-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA
AUL05455.1\|3581245_3581572_-	monothiol glutaredoxin, Grx4 family	NA	NA	NA	NA
AUL05456.1\|3581608_3582421_-	protein-(glutamine-N5) methyltransferase, release factor-specific	NA	NA	NA	NA
AUL05457.1\|3582431_3583514_-	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	3.3e-07	40.7
AUL05458.1\|3583600_3584875_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
AUL05459.1\|3585597_3586548_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05460.1\|3586646_3587549_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_24

3705965 : 3749135

Streptococcus_phage(11.11%)

transposase,tRNA,integrase

attL 3743974:3743992|attR 3749758:3749776

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL05554.1\|3705965_3706868_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05555.1\|3707014_3707917_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05556.1\|3707913_3708549_-	lysine transporter LysE	NA	NA	NA	NA
AUL05557.1\|3708678_3709578_+	transcriptional regulator ArgP	NA	NA	NA	NA
AUL05558.1\|3709673_3710165_+	hypothetical protein	NA	NA	NA	NA
AUL05559.1\|3710211_3711177_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL05560.1\|3712310_3713552_+	2-aminoadipate aminotransferase	A0A1X9I5H2	Streptococcus_phage	1.9e-14	24.9
AUL05561.1\|3713665_3714682_+	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	3.5e-75	43.8
AUL05562.1\|3714716_3715193_-	hypothetical protein	NA	NA	NA	NA
AUL05563.1\|3715335_3716244_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA
AUL05564.1\|3716357_3717470_-	DNA protecting protein DprA	S6BFL3	Thermus_phage	1.9e-21	35.0
AUL06149.1\|3717570_3718056_-	AsnC family transcriptional regulator	NA	NA	NA	NA
AUL05565.1\|3718192_3719443_+	kynureninase	NA	NA	NA	NA
AUL05566.1\|3719544_3720057_+	peptide deformylase	E3SLL2	Synechococcus_phage	8.5e-22	43.3
AUL05567.1\|3720155_3721106_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05568.1\|3721171_3722110_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.4e-09	35.7
AUL05569.1\|3722132_3722759_-	flavin-nucleotide-binding protein	NA	NA	NA	NA
AUL05570.1\|3722755_3723412_-	HAD family hydrolase	NA	NA	NA	NA
AUL05571.1\|3723408_3724011_-	hypothetical protein	NA	NA	NA	NA
AUL05572.1\|3724017_3724605_-	Rossman fold protein, TIGR00730 family	A0A2I2L3F0	Orpheovirus	1.1e-07	23.3
AUL05573.1\|3724785_3725355_+	bacterioferritin	NA	NA	NA	NA
AUL05574.1\|3725425_3726745_-	ribosomal protein S12 methylthiotransferase	NA	NA	NA	NA
AUL05575.1\|3726851_3727043_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA
AUL05576.1\|3727294_3728584_+	glycine/D-amino acid oxidase	NA	NA	NA	NA
AUL05577.1\|3728738_3729734_+	hypothetical protein	NA	NA	NA	NA
AUL05578.1\|3729818_3730493_+	GntR family transcriptional regulator	NA	NA	NA	NA
AUL05579.1\|3730489_3731392_-\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05580.1\|3731601_3732843_+	ornithine--oxo-acid transaminase	A0A1V0SKB7	Klosneuvirus	4.0e-25	25.2
AUL05581.1\|3732839_3733784_+	arginase	A0A0N9R043	Chrysochromulina_ericina_virus	9.5e-27	33.3
AUL05582.1\|3733950_3734853_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05583.1\|3734812_3735742_-	hypothetical protein	NA	NA	NA	NA
AUL05584.1\|3735795_3736131_-	alkylhydroperoxidase	NA	NA	NA	NA
AUL05585.1\|3736175_3736940_-	enoyl-CoA hydratase	NA	NA	NA	NA
AUL05586.1\|3736963_3737704_-	transcriptional regulator	NA	NA	NA	NA
AUL05587.1\|3737711_3739265_-	long-chain fatty acid--CoA ligase	A0A2K9L3I8	Tupanvirus	1.5e-13	22.6
AUL05588.1\|3739299_3740277_-	hypothetical protein	NA	NA	NA	NA
AUL05589.1\|3740549_3741131_-	ureidoglycolate hydrolase	NA	NA	NA	NA
AUL05590.1\|3741182_3748316_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
3743974:3743992	attL	NA	NA	NA	NA
AUL05591.1\|3748531_3748663_-	entericidin	NA	NA	NA	NA
AUL06150.1\|3748694_3748820_-	hypothetical protein	NA	NA	NA	NA
AUL05592.1\|3748928_3749135_-\|integrase	integrase	NA	NA	NA	NA
3749758:3749776	attR	NA	NA	NA	NA

DBSCAN-SWA_25

3755070 : 3790744

Burkholderia_phage(11.11%)

transposase,integrase

attL 3751609:3751626|attR 3796248:3796265

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3751609:3751626	attL	NA	NA	NA	NA
AUL05599.1\|3755070_3755973_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05600.1\|3755983_3756625_+	hypothetical protein	NA	NA	NA	NA
AUL05601.1\|3756791_3757034_+	hypothetical protein	NA	NA	NA	NA
AUL05602.1\|3757179_3758082_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05603.1\|3758117_3758585_+	hypothetical protein	Q3HQX1	Burkholderia_phage	2.1e-43	71.3
AUL05604.1\|3758818_3759196_+	hypothetical protein	NA	NA	NA	NA
AUL05605.1\|3759192_3759375_+	hypothetical protein	NA	NA	NA	NA
AUL05606.1\|3759378_3760365_+	DNA recombinase	H9C0R8	Aeromonas_phage	2.0e-67	57.3
AUL05607.1\|3760361_3761009_+	exonuclease	A0A0U2BXF3	Paracoccus_phage	2.0e-31	41.4
AUL05608.1\|3761066_3761594_+	hypothetical protein	NA	NA	NA	NA
AUL05609.1\|3761630_3762815_+	hypothetical protein	A0A291L9X3	Bordetella_phage	1.5e-24	37.8
AUL05610.1\|3762825_3763167_+	hypothetical protein	A0A0H5ARN8	Pseudomonas_phage	1.0e-10	45.3
AUL05611.1\|3763159_3763279_+	hypothetical protein	NA	NA	NA	NA
AUL05612.1\|3763279_3763480_+	hypothetical protein	NA	NA	NA	NA
AUL05613.1\|3763476_3764466_-\|integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	4.4e-75	44.4
AUL05614.1\|3765952_3767923_-	hypothetical protein	NA	NA	NA	NA
AUL05615.1\|3768164_3768563_+	hypothetical protein	NA	NA	NA	NA
AUL05616.1\|3768571_3769495_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUL05617.1\|3770000_3770903_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05618.1\|3771133_3772825_-	membrane protein insertase YidC	NA	NA	NA	NA
AUL05619.1\|3772873_3773146_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.0e-15	52.2
AUL05620.1\|3773142_3773514_-	ribonuclease P protein component	NA	NA	NA	NA
AUL05621.1\|3773609_3773744_-	50S ribosomal protein L34	NA	NA	NA	NA
AUL05622.1\|3774149_3775559_+	chromosomal replication initiation protein DnaA	NA	NA	NA	NA
AUL05623.1\|3775561_3776671_+	DNA polymerase III subunit beta	B4UTW9	Rhizobium_phage	1.2e-41	32.6
AUL05624.1\|3776765_3779219_+	DNA gyrase subunit B	G3M9Z3	Bacillus_virus	2.3e-112	34.8
AUL05625.1\|3779337_3780129_-	IclR family transcriptional regulator	NA	NA	NA	NA
AUL05626.1\|3780248_3781676_+	amidase	NA	NA	NA	NA
AUL06151.1\|3781714_3782686_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUL06152.1\|3782770_3782974_+	hypothetical protein	NA	NA	NA	NA
AUL05627.1\|3783104_3784268_+	alpha-hydroxy-acid oxidizing enzyme	NA	NA	NA	NA
AUL05628.1\|3784355_3785201_+	AraC family transcriptional regulator	NA	NA	NA	NA
AUL05629.1\|3786805_3787708_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AUL05630.1\|3787704_3788049_-	hypothetical protein	NA	NA	NA	NA
AUL05631.1\|3788262_3788637_-	MerR family transcriptional regulator	NA	NA	NA	NA
AUL05632.1\|3788711_3789770_+	Zn-dependent hydrolase	NA	NA	NA	NA
AUL05633.1\|3789793_3790744_-\|transposase	IS481 family transposase	NA	NA	NA	NA
3796248:3796265	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: CP018040.1|AUL04247.1|2034792_2035029_+|50S-ribosomal-protein-L28

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP018040.1|AUL04247.1|2034792_2035029_+|50S-ribosomal-protein-L28

2034792_2035029_+

78 aa aa

1975064-2039384

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP018040_4	Orphan	4.1\|1146810\|32\|CP018040\|CRISPRCasFinder	1146810-1146841	32	1996844-1996813	0

1. spacer 4.1|1146810|32|CP018040|CRISPRCasFinder matches to CP018040 position: 1996844-1996813, mismatch: 0

tttgccgccgggccgccccaaggcaaaaaagc	CRISPR spacer
tttgccgccgggccgccccaaggcaaaaaagc	Protospacer
********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP018040

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information