CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP018898	Bordetella trematum isolate E202 chromosome, complete genome	0 crisprs	csa3,DinG,cas3,DEDDh,PD-DExK	0	0	1	0

1. CP018898

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	3721915 : 3727566	6	Pseudomonas_phage(16.67%)	portal,terminase,capsid	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>CP018898|3721915:3727566|DBSCAN-SWA
GCTAAATTGCCACCACGCGGTACGGATTCAGCAGCCGCTCATAGGTCCGGTTCTGGTAGTAGGCGGTAGCTCCTTCGCCTGACGCCTGGCGCTCGCGGTTCTCGTACAAGTCGGCCACTTGCAACAGGATTGCGGCCTTTACCGGTGCTGGCATGACCGCAGTCAGTTCATCGGTGGTCAGGTTGAGATAGTCCGCTGTGGCATCAGTCGCAGCGGCGATCATGCCCTGAATCGCTGCATCTTCCACGCCATGAGTCACACGCAAGTACATCTTGGCATCGTCGAGCGTCACCATACTTTTCTCCTCAAACAAACATGAATTGCCCATCGTCGTAGACGCTGGGGCCGGTTTCCTCGGTTTGGGCCGCGACACCAAAGGCCATCGCCATTGCCACCATGCCGTCAATGCGGCCGGTGGCGCGGGCCTTGTCCAGCTTGCGCGACCCTGCCGGATCTTTCGTTACTACCGCGTTGGCTGCACACATCGACAGGGCCGGGTGCATCCCGTGTGCCACGCGGGCATTCAGCAGTTCGGCCTCGACGGCATCGATCGCCGGGGCCATGTCCTTGAAACCCTGCCCCCAGGGGACCAGCGGTAGATCGACGCCCAGGCGGTCCAGTTCTTTTATCAGCAGGTCAATGCGCCAGCGGTCATAGGCGATGGCCTGCACGTCCAGGTCCGCCACAATCTCCGCAATGTCGGCGGCCACATAGTCATAGTCCACGGTTGCGCCCGGCGTGGTGCGCAGGAAGCCTTGCGACACCCACAGGTCATAGGGCACGCGGTCTTTCTGCGCCCGGTCGTGCAGCCCTTGCGCCGGCGTCCAGAAGTACGCATGGGCCTGCCACACGCCGTCCATCTGGCCAATCAACACGAGGGCGGTAAGGTCGGTACGGCCCGACAGATCGAGGCCGCCATACACGGGGCCATCGAACGCCCGCGGCTGCGCCCCGCAAGCCTTCCACACGTCCGGAGAGATGAGCGGGCTTTCGGTGGACACTCGCTGATTCAGCAGCAGATTGCGCGCCGTGTTTTCCATGCTGGGCATGCGCTGCGCCTGTTTCATCTGCTCGGCCAGGTCGTCCAGGCTTCGGAATAGACCCAGGGCTGGATTAGCGGCCTCCCAGGCGCTCCGGTCCATCAGGTCGCACCCCTCGGGTGCTTCGTAGACATGAGACACGATGCGCGGATCTTGGCTCTTTTCGGCATCATCGAGCCACACTGACAGCAGATCGGTATCGCTGGCGGCCTGCGTGGAGATGACCAACAGCAGCGGGTCCTCGTGCGCGCCCTGGCTGGTCAAGATGGCGTCCACAAAGTCGCTGCGCGGCCCGCGCACCTGGCCCACCTCATCCAGAATCGCCAGGACGGGGGATAGCCCGTGGGCTGTCTTGCCTTCGGCGGCTAGCGCCCGATACTCGGTATTGAGCGGCAAACCCAGCAAGCGCTTGCCGGACGGGATGATCTTGACGATGTGCGACAGCTTAGGCGACTGCTGCACCATCTTGGCGGCCAGATTGAACACCAAGGCGGCCTGTTCCCGGCTCATCGCGCCAGAGACGATCTGGCTATTCTGCTTGGCCTCCGGCCCCACCAGGTGCGCAAGCAGCAGCCCTGCAATCAAGCCGGTCTTGCCGTTCTTGCGAGCAATGGACAGATTGGCGCGGCGAGTGCCTGCCGGGTTGTCATAGACCTCCAGAATGAAGCGCTTCTGAAACTCCGCCAGGACCAGCGGCTTACCGACGTGCGCGCCATCCGGCGTGACGCAGTAGCGCTCAATGAAGGCAATGACGGCCTCGCCTCGGGTCATTTCACGGCCCGCAGAGTAGGAATCAAGGGGTCATCCTCGGCGGTCACGCTGCGCTCATTCTGAAGCGCTTTCGCTGCGTCCTGCGAACGCCCCACCGTGGCTTGAGCGTGGACATGCAGCATCCGGGACAACGCCACCGCGCGCCGTGTCAGCGTTTCGATCAGTTTGTGCTTCGGATTGATGTCCATATCCACGACATCCAGCTCTTTGGATACGAGATGGTGCAGGCGCTCGATATCGGCCTGCGTACGCGCCAGGTTGGCAGCATGGGCCAGGTCGGTATCTGTCCAGGTGTCTCGGGCGCGGGCGATCATGATCGCGGTCCAGAAGGGGCGGTCAATGTCTCGAAGCTGGATGTGCTTGGGCGGCTCCAGCGGTCCCAGGGCGGCGTTTTGGTGCGCCTGGACGGCAGCGGCAGCAGAGTCGGAGCGTTTGCGCTTTGGCGTGACTTTCATAATATGAAATCTTTGCAGTTAGCGAAAAATAAAGGGGGAACGGTCGGTCTAGCGGGTTCAGTCCGTGGTGATTTTTTTTGATGCGCTAAGGTTCCACGGGTGGTCCGGGTCCATCGGCATCCCGTTTGCGTCGCAGCCATAGGACACCCTGGCCCCGTGGTCCCTGGCCGTCTTGCGTGAGTGGCACGAGTGGCACAGGCCCACCAGGTTGTCCATGTCGTTGTTACTCGGGTCGCCGTCGTCGTGGTCAACGTCCGTTGCCGGGACGATCAGTCCGCGCTTGCTGCACTCCCTGCACAGCGGCTCGTCGGCCAGCACAGAAGCCCGCAGGCGCTGCCACGCAGCGCTGTTGAGGGGAATGGTGCGGCGTGGGTCTGCCTCCCGTCCTGAACGGTTGGCGGACCTCCTATTCGGCGTTGTGCTCTTGCGCATCATCTATCCCTTCAATCACAGGCAGGTTCTCCAGGCGACGGGCCTCGGACTTCATCATCCACCCGGCACTAATGCCCTTGTCGTAGAAGTCGGCGCGGTTCGTAGCGTCTCCCCGCAGTAGCCCCTCTACCGAGTGCTCGGCAAAGTAGGTGCGCCGTCCCGCAGCGGTTAGCAGTTGGCGGGCAATACCTTGCTCCCACATGACCAGGTGACGGCGCAGGCTCATAGTCACGAACTGGCGGGCCATCTCTACGCTGTTGCTGTAGTTGCCGTGGCGCAGATCACCGATGACCGTGGGCGGAACACGGAACAGGCGGGCCACCTCCTCAACGCTGAATTGGCGGGCTGCTATCCACTCCGCATCCTCCAGCGTCATGCTGATAGTCTGGTAGTCCACTCCCTCTTCCAGTACCGCCGTGCGCCCGCTGTTGGCATGGCCGCTGTACTGCGTATCCCAGCTTTGCTTCAGGGCGGCGCGCTGCTCTGGTTTCAGCTTTTGCGGAAACTTCAAGATGCCGGACAGCTTGGCCCCATTGCGAAACGTCGCATTGCCGTGCTCACGTTCGGCCAGGGCCAAGTCCACCACATCACGAGCAGCTGCGATGGGCGAGACGCCCAGGACGGCATCATCGTTGCCACGGTGGCGCAGGTGAAAGACTTCTTCAGCTAGCAGGCGTGTAACCCGCCCATGCCGGTCGGCATAGTCGAAGGCCAGCCGGTAGTCCCCCGTGGTGCGCAGCGGCGTCACGCGGTCAGGGTGCAGGGGCAGCAGCTCGCGCACCTGGCCATCCCAGCCACGCACGATGCGTGCATAGGCATTGCCGCGCAACAGGACGCAGGCTTGCATCCACTCGCGGAACTCCAACGCGCTTTGAAACTCATTCGGAGCGTCATGCAGAACCGGATACAGAGGATGATCGGCAGCGCGCCCCCGATCATCGCCACCCTTGCGCTCAAAGAGGATCAGCGGCAGCGATGCGATGGTCTCCGAGATTGCCGCCACACATGCATATACGGCGCTCACTCCCTCAGCGCGGGCCGGGTTCAAGCCGCCCCCACTCAAGGCCGCGAAATTCTCCCAATAGTCATCGCCGTTGCTGCGTTTCTCGTAGCCGAAGCGGGACAGAATGCGGTGCATCAGTTGCATACCGTCTCCAGCCAGCGCGCGCGGGGATCGCATCCACCAACCGTGAAGAACTGGTAGCGATTCGGATTCGAGCGCATGGCAACGGTCGTATCGGCATAGGCCGGGTCGTGGGTCAGCGTCACTTCGACCAAATCGACTTTGACCAACTCACGAATAAGGCGGTTACCGCGTTGCTCCCAACGGTCGCCGCCCTCGGAGACACGGAAGCCGAAGGAACATCCGGCAATGTCGCCGCGCTCCACCAGCACGCCCACGTCATTGCCATAGGACGTATCCGGCAGATCGACTTCAAAGGCCAGGCCGGTGTCATCCTCGCGCAGGCGCAGCGTTCCGGCCTGCGTGGTGCCAAGCAAGCTCAGATCGTTGTGGTGGTACAGCGCCCGGATGTTGCGACCCCGGCGCAGCGATTCCGCGAAAGCGCCAGGCCGGATGATTTCCACGAAGCCGCCCAGGTCGGTGGACTCGCTGTTGAATACCGCTGCGTGGCCGCCCACCTTCCCAGGCGAGACGGCGCGCAGGCCACCGTGAGAACGGATCTCCAAGTCCATGCGCGCCCCCGTCATTACGCCAGGTCCACGTCATCCACCGAGACGAAAGCCTCGGGGTGGCGCACCGCCTGGTCTGCCGTCATCATGGCGCGGATCAGCACATTGCCACGGCGGTAAGCCGATTCCGCGTAGGGGTTCACCAGCAGATCGACTTCGGACCAGATGCCCAGGATCAATTGCGAGAAGTCCCCGAAGATCAGCCGGCCGGTGGCGGGCGTGCCTGCCTTGTTCGGCGTCTGGTTCGTGGAGACCAGCGGATAACCGGCCAGGCTAGCGCCGTCGCTCAGATAGATGCCGGTGTTGGCGGACTTCTCCGTGGCCTGCAAGACGCGCTTGACGCTGGGATTGGTCAGCCAGCGCCCGCCGTCGATATTCTTCAGGTCCAGCTTTTCGATAATGCGCAGCACGCCATCCCAGGTCGGGGCGGCCAGCGATGCCGTTTGAATGCCAGTCATCCCCAGCAGGCCCAGCGGCTCTTTCACGCCATCGCCGGACAACAGGGCGCGGTCCAAGGCTTCACCCATCACGAACGACAGGTCATCACGTACCAGCGAGTTGATGTCGGGGCTGGACTGCTGGATAAGCTGGCGCGACAGTTCGGTAATGGCACCGACGTGGCGCGGCTTGAGCGTCACGGGGTCATCGAAGTCCATGCCGGAATCGGACAGGGCCTCATTCTCGGACACCCAGCCAGCGGACATGCCGCTCTTGAACTTGGGGATAACCACGTTGCCGCGCAGACCGGTCAGGACACGCGCCCCCAGCGAACGCATCACCAGCGCATTGCGCAGCGGGCCGATGAACTGGTCAGCGCGGAAGTCTTCGGGAACGATGCCCGACGCCGCGGTCGTGGTCTGTGCGGCGCGGGCCTCAAATGCGGCCATCGGCACATACACGCCTTCCGCCTTGCGGCCCGTGCGGCGCTCGGTCTCCTGGTGGTACTCAGCAGCAGCACCCGTCAGCGCGCGGCCCTCGCTTCGCGCCTGGATCACTTCCAGCAGGGATACACGGCGCTCCACGTCTGCGAAGGACTCGCCGCCCCCTGTCACACGGTCGCCCGTCATACGGCGCTCCATATCGGCCATGAAGATGGCGCGCTGTTCATCGCCTTCCAGGGCCGTCACCTCGCCCTTGAGTTTGTCAAAGCCGGTTTGTTCGGCCTCGGTCAGGTTGCGCTTTTCCGTTTCGGCGCGAGCCAGGATGGCGCGCATCTCCACCACTTTGCGGGCCTTAGCCTCGCGGATTTCTGCTAGTGTCAT

Protein sequences of DBSCAN-SWA_1

>CP018898|3721915:3727566|3725749_3726307_-|AUL49316.1|DBSCAN-SWA
MDLEIRSHGGLRAVSPGKVGGHAAVFNSESTDLGGFVEIIRPGAFAESLRRGRNIRALYHHNDLSLLGTTQAGTLRLREDDTGLAFEVDLPDTSYGNDVGVLVERGDIAGCSFGFRVSEGGDRWEQRGNRLIRELVKVDLVEVTLTHDPAYADTTVAMRSNPNRYQFFTVGGCDPRARWLETVCN
>CP018898|3721915:3727566|3724586_3725759_-|AUL48467.1|portal|DBSCAN-SWA
MQLMHRILSRFGYEKRSNGDDYWENFAALSGGGLNPARAEGVSAVYACVAAISETIASLPLILFERKGGDDRGRAADHPLYPVLHDAPNEFQSALEFREWMQACVLLRGNAYARIVRGWDGQVRELLPLHPDRVTPLRTTGDYRLAFDYADRHGRVTRLLAEEVFHLRHRGNDDAVLGVSPIAAARDVVDLALAEREHGNATFRNGAKLSGILKFPQKLKPEQRAALKQSWDTQYSGHANSGRTAVLEEGVDYQTISMTLEDAEWIAARQFSVEEVARLFRVPPTVIGDLRHGNYSNSVEMARQFVTMSLRRHLVMWEQGIARQLLTAAGRRTYFAEHSVEGLLRGDATNRADFYDKGISAGWMMKSEARRLENLPVIEGIDDAQEHNAE
>CP018898|3721915:3727566|3722219_3723725_-|AUL48465.1|terminase|DBSCAN-SWA
MTRGEAVIAFIERYCVTPDGAHVGKPLVLAEFQKRFILEVYDNPAGTRRANLSIARKNGKTGLIAGLLLAHLVGPEAKQNSQIVSGAMSREQAALVFNLAAKMVQQSPKLSHIVKIIPSGKRLLGLPLNTEYRALAAEGKTAHGLSPVLAILDEVGQVRGPRSDFVDAILTSQGAHEDPLLLVISTQAASDTDLLSVWLDDAEKSQDPRIVSHVYEAPEGCDLMDRSAWEAANPALGLFRSLDDLAEQMKQAQRMPSMENTARNLLLNQRVSTESPLISPDVWKACGAQPRAFDGPVYGGLDLSGRTDLTALVLIGQMDGVWQAHAYFWTPAQGLHDRAQKDRVPYDLWVSQGFLRTTPGATVDYDYVAADIAEIVADLDVQAIAYDRWRIDLLIKELDRLGVDLPLVPWGQGFKDMAPAIDAVEAELLNARVAHGMHPALSMCAANAVVTKDPAGSRKLDKARATGRIDGMVAMAMAFGVAAQTEETGPSVYDDGQFMFV
>CP018898|3721915:3727566|3723721_3724180_-|AUL48466.1|DBSCAN-SWA
MKVTPKRKRSDSAAAAVQAHQNAALGPLEPPKHIQLRDIDRPFWTAIMIARARDTWTDTDLAHAANLARTQADIERLHHLVSKELDVVDMDINPKHKLIETLTRRAVALSRMLHVHAQATVGRSQDAAKALQNERSVTAEDDPLIPTLRAVK
>CP018898|3721915:3727566|3721915_3722209_-|AUL48464.1|DBSCAN-SWA
MVTLDDAKMYLRVTHGVEDAAIQGMIAAATDATADYLNLTTDELTAVMPAPVKAAILLQVADLYENRERQASGEGATAYYQNRTYERLLNPYRVVAI
>CP018898|3721915:3727566|3726321_3727566_-|AUL48468.1|capsid|DBSCAN-SWA
MTLAEIREAKARKVVEMRAILARAETEKRNLTEAEQTGFDKLKGEVTALEGDEQRAIFMADMERRMTGDRVTGGGESFADVERRVSLLEVIQARSEGRALTGAAAEYHQETERRTGRKAEGVYVPMAAFEARAAQTTTAASGIVPEDFRADQFIGPLRNALVMRSLGARVLTGLRGNVVIPKFKSGMSAGWVSENEALSDSGMDFDDPVTLKPRHVGAITELSRQLIQQSSPDINSLVRDDLSFVMGEALDRALLSGDGVKEPLGLLGMTGIQTASLAAPTWDGVLRIIEKLDLKNIDGGRWLTNPSVKRVLQATEKSANTGIYLSDGASLAGYPLVSTNQTPNKAGTPATGRLIFGDFSQLILGIWSEVDLLVNPYAESAYRRGNVLIRAMMTADQAVRHPEAFVSVDDVDLA

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUL48464.1|3721915_3722209_-	DNA packaging protein	A0A0U4JEH2	Pseudomonas_phage	4.4e-07	39.0
AUL48465.1|3722219_3723725_-|terminase	terminase	F1C585	Cronobacter_phage	7.7e-188	65.9
AUL48466.1|3723721_3724180_-	TerS protein	A0A0F7L441	uncultured_marine_virus	1.8e-18	40.0
AUL48467.1|3724586_3725759_-|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	1.3e-62	37.7
AUL49316.1|3725749_3726307_-	histone H1	B4UTP2	Rhizobium_phage	1.1e-30	52.5
AUL48468.1|3726321_3727566_-|capsid	major capsid protein	A0A0K1Y730	Rhodobacter_phage	2.7e-37	30.8