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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP023675 Escherichia coli strain SMN013SH2 plasmid pO177B2, complete sequence 0 crisprs NA 0 0 0 0
CP023673 Escherichia coli strain SMN013SH2 chromosome, complete genome 6 crisprs csa3,cas3,cas8e,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,PrimPol 0 4 16 0
CP023674 Escherichia coli strain SMN013SH2 plasmid pO177A2, complete sequence 0 crisprs NA 0 0 3 0

Results visualization

1. CP023673
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP023673_1 640861-640981 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP023673_2 985270-985358 Orphan I-E
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP023673_3 1011497-1011650 TypeI-E I-E
2 spacers
cas2,cas6e,cas5,cas7,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP023673_4 2315314-2315437 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP023673_6 3458847-3458991 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP023673_7 4197977-4198092 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP023673_5 5.1|3048890|40|CP023673|CRISPRCasFinder 3048890-3048929 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 1 0.975
CP023673_7 7.1|4198008|54|CP023673|CRISPRCasFinder 4198008-4198061 54 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 165411-165464 1 0.981
CP023673_4 4.1|2315357|38|CP023673|CRISPRCasFinder 2315357-2315394 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
CP023673_3 3.1|1011529|29|CP023673|PILER-CR 1011529-1011557 29 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 19327-19355 6 0.793
CP023673_3 3.1|1011529|29|CP023673|PILER-CR 1011529-1011557 29 MK448454 Streptococcus satellite phage Javan361, complete genome 9192-9220 7 0.759
CP023673_7 7.1|4198008|54|CP023673|CRISPRCasFinder 4198008-4198061 54 NZ_CP048385 Citrobacter freundii strain 62 plasmid p6_C, complete sequence 72431-72484 12 0.778

1. spacer 5.1|3048890|40|CP023673|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcattcttgaaattccccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
************************ ***************

2. spacer 7.1|4198008|54|CP023673|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.981

tggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattc	CRISPR spacer
tggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattg	Protospacer
***************************************************** 

3. spacer 4.1|2315357|38|CP023673|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

4. spacer 3.1|1011529|29|CP023673|PILER-CR matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 6, identity: 0.793

gtttggtc--caccaaatgtttgatgcttca	CRISPR spacer
--ttacccgacaccaaatgtttggtgcttca	Protospacer
  **. .*  *************.*******

5. spacer 3.1|1011529|29|CP023673|PILER-CR matches to MK448454 (Streptococcus satellite phage Javan361, complete genome) position: , mismatch: 7, identity: 0.759

gtttggtccaccaaatgtttgatgcttca	CRISPR spacer
tatcaatccaccaaatttttgattcttca	Protospacer
  *...********** ****** *****

6. spacer 7.1|4198008|54|CP023673|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 12, identity: 0.778

tggcctacacgct-----gcgattttgtaggccggataagcaaagcgcatccggcattc	CRISPR spacer
-----tacaaattaattcgcggtattgtaggccggataagcaaagcgcatccggcagta	Protospacer
     **** ..*     ***.* ******************************** * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1121116 : 1130372 9 Enterobacteria_phage(44.44%) tail NA
DBSCAN-SWA_2 1393868 : 1477430 89 Enterobacteria_phage(53.06%) holin,integrase,tRNA,tail,plate,transposase attL 1391400:1391416|attR 1418523:1418539
DBSCAN-SWA_3 1662953 : 1761724 103 Enterobacteria_phage(37.33%) holin,capsid,integrase,head,tRNA,terminase,tail,lysis,transposase attL 1679796:1679816|attR 1736218:1736238
DBSCAN-SWA_4 1778579 : 1812371 38 Enterobacteria_phage(35.29%) integrase,terminase,tail,lysis,transposase attL 1784836:1784851|attR 1813956:1813971
DBSCAN-SWA_5 1853623 : 1861225 8 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_6 1888287 : 2019924 168 Escherichia_phage(29.84%) holin,integrase,coat,head,portal,plate,terminase,protease,tail,lysis,transposase attL 1885507:1885522|attR 1977445:1977460
DBSCAN-SWA_7 2417554 : 2422873 9 Escherichia_phage(28.57%) NA NA
DBSCAN-SWA_8 2551299 : 2606962 55 Stx2-converting_phage(45.71%) holin,head,tail,lysis,capsid,transposase NA
DBSCAN-SWA_9 2831450 : 2941900 134 Enterobacteria_phage(32.91%) holin,capsid,integrase,head,tRNA,terminase,protease,tail,lysis,transposase attL 2835600:2835615|attR 2954530:2954545
DBSCAN-SWA_10 3028697 : 3135648 118 Enterobacteria_phage(24.39%) holin,integrase,terminase,protease,tail,lysis,transposase attL 3085906:3085965|attR 3120503:3120567
DBSCAN-SWA_11 3445647 : 3457363 17 Enterobacteria_phage(43.75%) tail,holin,transposase,integrase attL 3443884:3443898|attR 3457437:3457451
DBSCAN-SWA_12 3905655 : 3943160 44 Stx2-converting_phage(30.77%) transposase,integrase attL 3908932:3908945|attR 3915584:3915597
DBSCAN-SWA_13 4008537 : 4084314 58 uncultured_Caudovirales_phage(12.5%) tRNA,plate,transposase,protease NA
DBSCAN-SWA_14 4265292 : 4347822 95 Escherichia_phage(35.82%) holin,integrase,head,tRNA,terminase,tail,lysis,capsid,transposase attL 4325920:4325979|attR 4354086:4354852
DBSCAN-SWA_15 4506527 : 4560464 48 Vibrio_phage(15.38%) tRNA,protease,transposase NA
DBSCAN-SWA_16 4682133 : 4753408 85 Stx2-converting_phage(27.27%) holin,integrase,tRNA,terminase,tail,lysis,transposase attL 4685435:4685452|attR 4712042:4712059
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP023674
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 9556 10 Macacine_betaherpesvirus(50.0%) NA NA
DBSCAN-SWA_2 22493 : 71147 42 Stx2-converting_phage(53.33%) transposase NA
DBSCAN-SWA_3 83057 : 84271 1 Enterobacteria_phage(100.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage