CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP014218	Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence	0 crisprs	NA	0	4
CP014220	Clostridium botulinum strain B515 plasmid pRSJ21_1, complete sequence	0 crisprs	NA	0	0
CP014221	Clostridium botulinum strain B515 plasmid pRSJ21_2, complete sequence	0 crisprs	NA	0	0
CP014219	Clostridium botulinum strain B515 chromosome, complete genome	6 crisprs	DEDDh,csa3,DinG,WYL,cas3,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,casR	2	7

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 9380

uncultured_Caudovirales_phage(50.0%)

terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN23808.1\|34_280_+	hypothetical protein	NA	NA	NA	NA
AUN23726.1\|316_688_+	hypothetical protein	H7BVN4	unidentified_phage	8.9e-21	42.5
AUN23727.1\|1003_1204_+	transcriptional regulator	A0A2H4J765	uncultured_Caudovirales_phage	1.4e-17	70.8
AUN23728.1\|1378_1537_+	hypothetical protein	A0A2H4J4S7	uncultured_Caudovirales_phage	2.4e-15	80.0
AUN23729.1\|1897_2302_+	hypothetical protein	A0A2H4J7M8	uncultured_Caudovirales_phage	3.3e-13	37.0
AUN23730.1\|2313_2547_+	hypothetical protein	NA	NA	NA	NA
AUN23809.1\|2552_4883_+	hypothetical protein	A0A2H4J056	uncultured_Caudovirales_phage	4.8e-144	38.7
AUN23731.1\|4952_5258_+	hypothetical protein	NA	NA	NA	NA
AUN23732.1\|5247_5658_+\|terminase	terminase small subunit	A0A0A8WDX8	Clostridium_phage	4.0e-22	42.8
AUN23733.1\|5660_6905_+\|terminase	terminase	A0A0S0KEN9	Bacillus_phage	1.2e-149	62.0
AUN23734.1\|8318_8735_+	hypothetical protein	NA	NA	NA	NA
AUN23735.1\|8737_9004_+	hypothetical protein	NA	NA	NA	NA
AUN23736.1\|9188_9380_+	hypothetical protein	F6K8R9	Clostridium_phage	2.7e-05	44.6

DBSCAN-SWA_2

12672 : 36001

Clostridium_phage(20.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN23743.1\|12672_12960_+	hypothetical protein	Q0SPJ2	Clostridium_phage	2.3e-24	59.3
AUN23744.1\|12961_13207_+	hypothetical protein	NA	NA	NA	NA
AUN23745.1\|13627_14941_+	hypothetical protein	A0A2H4PJ27	Corynebacterium_phage	1.1e-07	23.0
AUN23746.1\|14979_15747_+	hypothetical protein	A7YGU2	Staphylococcus_virus	2.7e-11	25.3
AUN23747.1\|15908_16148_+	hypothetical protein	NA	NA	NA	NA
AUN23748.1\|16194_16623_+	phage N-6-adenine-methyltransferase	A0A0A7RUD1	Clostridium_phage	3.5e-69	87.1
AUN23811.1\|16664_17324_+	DNA modification methylase	A0A1S5S9L2	Streptococcus_phage	8.0e-89	67.6
AUN23749.1\|17392_17779_+	hypothetical protein	NA	NA	NA	NA
AUN23750.1\|17817_18069_+	hypothetical protein	NA	NA	NA	NA
AUN23751.1\|18417_18624_+	hypothetical protein	NA	NA	NA	NA
AUN23812.1\|18640_18916_+	hypothetical protein	A0A2H4J4N1	uncultured_Caudovirales_phage	9.5e-36	85.1
AUN23752.1\|18909_19056_+	hypothetical protein	NA	NA	NA	NA
AUN23753.1\|19058_20168_+	hypothetical protein	NA	NA	NA	NA
AUN23754.1\|20169_20388_+	hypothetical protein	NA	NA	NA	NA
AUN23755.1\|20751_21135_+	hypothetical protein	A0A0K0MWE1	Streptococcus_phage	3.0e-27	50.0
AUN23756.1\|21355_21601_+	hypothetical protein	NA	NA	NA	NA
AUN23757.1\|21604_21820_+	hypothetical protein	NA	NA	NA	NA
AUN23758.1\|22092_23013_+	hypothetical protein	I6S2W2	Marinomonas_phage	1.8e-14	36.1
AUN23759.1\|23012_24125_+	hypothetical protein	B0VK33	Azospirillum_phage	1.7e-62	41.6
AUN23760.1\|24136_24463_+	hypothetical protein	NA	NA	NA	NA
AUN23761.1\|24544_25150_+	hypothetical protein	NA	NA	NA	NA
AUN23813.1\|25152_25656_+	hypothetical protein	E5DV55	Deep-sea_thermophilic_phage	1.3e-25	40.2
AUN23762.1\|25675_26017_+	hypothetical protein	NA	NA	NA	NA
AUN23763.1\|26009_26537_+	hypothetical protein	NA	NA	NA	NA
AUN23764.1\|26541_27579_+	hypothetical protein	A0A2D1GQ64	Lysinibacillus_phage	1.8e-18	31.4
AUN23765.1\|27593_28010_+	hypothetical protein	NA	NA	NA	NA
AUN23766.1\|28029_28239_+	hypothetical protein	NA	NA	NA	NA
AUN23767.1\|28262_28625_+	hypothetical protein	NA	NA	NA	NA
AUN23768.1\|28818_31503_+\|tail	phage tail tape measure protein	B6CXF2	Clostridium_phage	1.1e-72	41.5
AUN23769.1\|31566_32193_+	hypothetical protein	NA	NA	NA	NA
AUN23770.1\|32265_32775_+	hypothetical protein	NA	NA	NA	NA
AUN23771.1\|32789_33125_+	hypothetical protein	A0A1L2JY63	Aeribacillus_phage	4.6e-08	34.5
AUN23772.1\|33117_33930_+	hypothetical protein	A0A1L2JY62	Aeribacillus_phage	8.5e-32	31.0
AUN23773.1\|33929_34466_+	hypothetical protein	NA	NA	NA	NA
AUN23774.1\|34470_34842_+	hypothetical protein	NA	NA	NA	NA
AUN23775.1\|34834_36001_+	hypothetical protein	E5DV64	Deep-sea_thermophilic_phage	1.6e-52	35.8

DBSCAN-SWA_3

39232 : 40778

Clostridium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN23781.1\|39232_39385_+	hypothetical protein	A0A249XXC6	Clostridium_phage	4.4e-11	68.9
AUN23782.1\|39439_39685_+	hypothetical protein	NA	NA	NA	NA
AUN23783.1\|39752_40778_+	DNA (cytosine-5-)-methyltransferase	X2JIV2	Bacillus_phage	1.3e-69	41.4

DBSCAN-SWA_4

46965 : 56892

Clostridium_phage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN23790.1\|46965_47451_+	hypothetical protein	A0A059T5F1	Listeria_phage	2.5e-15	36.5
AUN23791.1\|47469_48357_+	hypothetical protein	A0A088FAU5	Sulfitobacter_phage	6.6e-70	47.0
AUN23792.1\|48372_48984_+	hypothetical protein	A0A0A7RVW0	Clostridium_phage	1.1e-60	60.3
AUN23793.1\|48984_49131_+	hypothetical protein	NA	NA	NA	NA
AUN23794.1\|49276_49594_+	hypothetical protein	NA	NA	NA	NA
AUN23795.1\|49593_49839_+	stage III sporulation protein D	M9Q261	Clostridium_phage	2.8e-15	53.3
AUN23796.1\|49862_50657_+	hypothetical protein	NA	NA	NA	NA
AUN23797.1\|50668_52609_+	hypothetical protein	A0A2H4J8K1	uncultured_Caudovirales_phage	5.9e-23	27.5
AUN23798.1\|52602_52869_+	hypothetical protein	NA	NA	NA	NA
AUN23799.1\|53052_53289_+	hypothetical protein	NA	NA	NA	NA
AUN23800.1\|53305_53578_+	hypothetical protein	NA	NA	NA	NA
AUN23801.1\|53577_53787_+	hypothetical protein	NA	NA	NA	NA
AUN23802.1\|53787_54297_+	hypothetical protein	S6AVW3	Thermus_phage	1.0e-22	38.2
AUN23803.1\|54360_54828_+	hypothetical protein	D9ZNH9	Clostridium_phage	6.4e-16	41.5
AUN23804.1\|54876_55881_+	DNA (cytosine-5-)-methyltransferase	D2IZY5	Enterococcus_phage	2.0e-91	54.7
AUN23805.1\|55927_56173_+	hypothetical protein	NA	NA	NA	NA
AUN23806.1\|56262_56892_+	hypothetical protein	F8UBK4	Clostridium_phage	4.2e-47	49.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP014219

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CRISPR-Cas detection and classification

Crispr_ID: CP014219_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP014219_1

1036600-1036692

Orphan

III-B

Consensus_repeat	Method
TTGAACAATAACATGAGATGTATTTAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP014219_1

>merge|CP014219|1|1036600-1036692|CRISPRCasFinder
TTGAACAATAACATGAGATGTATTTAAATAAAACAATTCCTCTTGAAGGTTGTTTGTTTTTCTATTGAACATTAACATGAGATGTATTTAAAT

>CP014219|1|1|1036600-1036692|CRISPRCasFinder
TTGAACAATAACATGAGATGTATTTAAAT	AAAACAATTCCTCTTGAAGGTTGTTTGTTTTTCTA
TTGAACATTAACATGAGATGTATTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP014219.1\|AUN24701.1\|1040937_1042026_+\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|180542
CP014219.1\|AUN24691.1\|1028259_1028931_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP014219.1\|AUN24706.1\|1045022_1045895_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
CP014219.1\|AUN24704.1\|1043284_1043983_+\|cobalt-ECF-transporter-T-component-CbiQ	unknown	unknown	gnl\|CDD\|274139
CP014219.1\|AUN24705.1\|1044391_1045054_+\|precorrin-2-dehydrogenase	unknown	unknown	gnl\|CDD\|235504
CP014219.1\|AUN24703.1\|1043022_1043322_+\|cobalt-ABC-transporter-substrate-binding-protein-CbiN	unknown	unknown	gnl\|CDD\|179494
CP014219.1\|AUN24688.1\|1021911_1022121_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|226489
CP014219.1\|AUN24695.1\|1033311_1033857_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP014219.1\|AUN24692.1\|1028927_1029959_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP014219.1\|AUN24689.1\|1023768_1025376_+\|cell-shape-determining-protein	unknown	unknown	gnl\|CDD\|379716
CP014219.1\|AUN24698.1\|1036803_1037568_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
CP014219.1\|AUN24696.1\|1033935_1035543_+\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234688
CP014219.1\|AUN24702.1\|1042299_1043019_+\|cobalamin-biosynthesis-protein-CbiM	unknown	unknown	gnl\|CDD\|181384
CP014219.1\|AUN24707.1\|1046030_1047491_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|273643
CP014219.1\|AUN24693.1\|1030310_1030859_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
CP014219.1\|AUN24697.1\|1035820_1036378_+\|adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanyltransferase	unknown	unknown	gnl\|CDD\|235612
CP014219.1\|AUN24700.1\|1039756_1040719_+\|cobalamin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|234919
CP014219.1\|AUN24699.1\|1038273_1039755_+\|cobyric-acid-synthase-CobQ	unknown	unknown	gnl\|CDD\|234838
CP014219.1\|AUN24690.1\|1025739_1028100_-\|sulfate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
CP014219.1\|AUN24694.1\|1031263_1032970_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276807

Protein	Function_ID	Function_description	E-value
CP014219.1\|AUN24701.1\|1040937_1042026_+\|aspartate-aminotransferase	gnl\|CDD\|180542	PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional.	2.59591e-90
CP014219.1\|AUN24691.1\|1028259_1028931_+\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.06578e-65
CP014219.1\|AUN24706.1\|1045022_1045895_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	3.23303e-147
CP014219.1\|AUN24704.1\|1043284_1043983_+\|cobalt-ECF-transporter-T-component-CbiQ	gnl\|CDD\|274139	TIGR02454, Uncharacterized_protein_MJ1089, cobalt ECF transporter T component CbiQ. This model represents the CbiQ component of the cobalt-specific ECF-type. CbiQ is now recognized as the T component of energy-coupling factor (ECF)-type transporters. The S component confers specificity (CbiM-N for cobalt systems), which CbiO is the ABC-family ATPase. In general, proteins found by this model reside next to the other putative subunits of the complex, identified as CbiN, CbiO, or CbiM. Note that the designation of cobalt transporter has been spread excessively among ECF system transporters with many other specificities. [Transport and binding proteins, Cations and iron carrying compounds].	2.2007e-28
CP014219.1\|AUN24705.1\|1044391_1045054_+\|precorrin-2-dehydrogenase	gnl\|CDD\|235504	PRK05562, PRK05562, NAD(P)-dependent oxidoreductase.	3.18003e-107
CP014219.1\|AUN24703.1\|1043022_1043322_+\|cobalt-ABC-transporter-substrate-binding-protein-CbiN	gnl\|CDD\|179494	PRK02898, PRK02898, energy-coupling factor ABC transporter substrate-binding protein.	1.72614e-41
CP014219.1\|AUN24688.1\|1021911_1022121_-\|acetyltransferase	gnl\|CDD\|226489	COG3981, COG3981, Predicted acetyltransferase [General function prediction only].	1.35488e-06
CP014219.1\|AUN24695.1\|1033311_1033857_+\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13156e-17
CP014219.1\|AUN24692.1\|1028927_1029959_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	7.26589e-59
CP014219.1\|AUN24689.1\|1023768_1025376_+\|cell-shape-determining-protein	gnl\|CDD\|379716	pfam14897, EpsG, EpsG family. This family of proteins are related to the EpsG protein from B. subtilis. These proteins are likely glycosyl transferases belonging to the membrane protein GT-C clan.	0.00131254
CP014219.1\|AUN24698.1\|1036803_1037568_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	1.17034e-48
CP014219.1\|AUN24696.1\|1033935_1035543_+\|LexA-family-transcriptional-regulator	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	2.20997e-32
CP014219.1\|AUN24702.1\|1042299_1043019_+\|cobalamin-biosynthesis-protein-CbiM	gnl\|CDD\|181384	PRK08319, PRK08319, energy-coupling factor ABC transporter permease.	2.23594e-119
CP014219.1\|AUN24707.1\|1046030_1047491_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|273643	TIGR01469, Uroporphyrinogen-III_C-methyltransferase, uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	5.21983e-120
CP014219.1\|AUN24693.1\|1030310_1030859_+\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	9.57293e-40
CP014219.1\|AUN24697.1\|1035820_1036378_+\|adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanyltransferase	gnl\|CDD\|235612	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated.	1.31839e-84
CP014219.1\|AUN24700.1\|1039756_1040719_+\|cobalamin-biosynthesis-protein	gnl\|CDD\|234919	PRK01209, cobD, cobalamin biosynthesis protein.	5.61387e-153
CP014219.1\|AUN24699.1\|1038273_1039755_+\|cobyric-acid-synthase-CobQ	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
CP014219.1\|AUN24690.1\|1025739_1028100_-\|sulfate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.19141e-111
CP014219.1\|AUN24694.1\|1031263_1032970_+\|hypothetical-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.8656e-41

>CP014219.1|AUN24697.1|1035820_1036378_+|adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanyltransferase
MSNKNKVVLITGGVRSGKSEFAESLLQKEKSVLYIATAKITDKEMEHRVEKHKERRNSTWKTYEGYKGLGKIIKYYDEKNILLDCVTVMTTNLMFHKEIDYENIKEEELDEILEGIKKEFHDLIISVKEENKNIILVTNEVGYSIVPAYKLGRIFRDFQGIINKFIASLSDEVYLVTCGIPLKIK
>CP014219.1|AUN24696.1|1033935_1035543_+|LexA-family-transcriptional-regulator
MKLESGQNRIAKSKHLGYGLLRGSKGTGKTTAAIYRGIYLKNQYCMYDKDKVLILSKNEENLNYIKNIYNDAEKTGVQYITLFSYNEDKLHFSSIYKIINKYFWEYIENNNLQYELASEKEKLAIIEECINDIKNEYKNLKYIDIKYSKFFLEEIQWMKDCMYYDLEEYKKADRIGRKTKKGEGPQRIIKNSKIREAVFKIMLLYNEKLKYKNLVDYSDVVSMSLKEASKNKENKFNHIIVDEAQNFTKLELKFIEALGRKNIYSSILFIADKEKNLNPKGWITKGRKLNNLQLGFEFKRFNLNKKIGINVKEEVETYIDDCNLKRKASNINTKNEDVSNVDNSNSEDKGLDKNIKNEWHKDKVNYDMDKFEYVDMKHRRSYEFSRGLGSNEEIIVEDQGSKEEYKEDELTKLPVFNDIAAGEPILMNPCVEGEFNIPKYWVRGMKNCFILKVKGDSMIGANIEDGNHVVIKRQQMAENKDIVAVNLEGSATLKRLLIKKSGAVLMPENKKYKPIEILEEGASIIGIAVGIIKGK
>CP014219.1|AUN24695.1|1033311_1033857_+|N-acetyltransferase
MGKIKQAKYNINGKTIIIRHAEVQDAEQLINVTKKVNQETDFLLKDPGEVCLTIKEEKEFIQSQIDSQVDLLIVPEVDGRIVGVCSLNGNTNKRIRHSAQFGLAVEKEYCGMGIGKNLMKSGIQWAKENGIFRITLEVDINNYRAISLYLKLGFEIEGTLRNDKMLSDGSYTSGYAMALLL
>CP014219.1|AUN24694.1|1031263_1032970_+|hypothetical-protein
MDRFSFLKIEWPEIYQIICNVEEKSKEDSNITLIELAQIAELITKYILKENHIEKNTELLDEINLLKDCHNLNADIVDFFYKIIIVSNKAIYEDYSDSIIAKSFLDKMFEILVWFAIEYGKTDYRKVDLSNMIPEDKDIFNKYIKSKSYNYTEKNIENETMIQPFTIENEEFFKEENNDDINRYEQDVFETNEEFHKRIRNHEIFTLGRIFIEKSNINETDEIVAFPFSVYKSIQIKIPIIDMLYIERAEFENLSIEEEEYILFSKLDIINDKICIDINNIYIEVSNNKCKVHAVVLDISYYESYEKYRNIIYSKKPIPIGMIKFNKNKYDINKNEMPVTINYYDWIQKYILNTKAYIEIHRYEAKTLCKENLYYILNGKLDIFDKKLLIRGYYIQSKSLNKNFRINLHSSDPMNKLRCLVDKEEILAMNIIGEMYCKEQNYKEAMYWYKKAAEKGNSTSMNKIGVMYYEGKGVEQDYQKAMYWYKKSSQEGNFTAMSNIGSMYYNGQGVTEDYKKAMYWYKKSYKEGNFGVMRDIGSMYYEGKGVIKDYKKAMQCYKKASQIDNFIK
>CP014219.1|AUN24693.1|1030310_1030859_+|biotin-transporter-BioY
MDKKLKVRDMIYSALFATIIGVSSYIIIPLPISPVPITAQSLAIMLAGCVLTPIQVVLSMVTFLLMGIIGIPVFSGGTAGFGIIVGKTGGYLIGFLVGAIIISLLVHKNKSLVNMLIACFIGGIIVVHILGSAWLGQVTSIGIKKAFLLGSAPFIPGDLIKAVVAVLIGRKLSKEMKRIGTQ
>CP014219.1|AUN24692.1|1028927_1029959_+|two-component-sensor-histidine-kinase
MMNNKISVKMVVAFSLIVFFIVTSAVVISGLVVVFLSRFNVFTQPNPLILLGWLGIISIMVSTAIAQIIGKKVLSPISDLNKATKEVAKGNFNTRLSENSWTDEIREMAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERREYIHKILISTKRLSSLSGNILQITELENQKILPLEQKYYLDEQIRQTILLFEYEWTKKNIILDINLDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEVLITIKDNGIGMSEEVKNRVFEKFYQGDSSHYSDGNGLGLALVKRIIDICEGTIEISSHEAVGTEFTVKLPK
>CP014219.1|AUN24691.1|1028259_1028931_+|DNA-binding-response-regulator
MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYREYIDLIISDIMMPNMDGYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQIINERRIVIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGIESETDPRTVDVHINRLRDRFKDNKDFNIITIRGLGYKVVKQ
>CP014219.1|AUN24690.1|1025739_1028100_-|sulfate-ABC-transporter-ATP-binding-protein
MLQIKDLKKVYTTGEFKQTALDGVSIDFRQSEFVAILGPSGSGKTTLLNMLGGLDQYDSGNMIINGLSTKKFGESDWDTYRNNSVGFIFQSYNLIPHLSIVDNVEMGMTLSGVPKSEKRQKATYVLEKVGLGNHIHKKPNQLSGGQMQRVAIARALANDPEIILADEPTGALDTQTSEQIMDLIKEIAKDKLVIMVTHNPELAEEYADRIVSFSDGKIVSDTNPFVSENNSNDYKPKKTSMNFLTALKLSGNNIVTKKWRTALTAFASSIGIIGVALVLSLSNGFNKQINEFEKDSLSNYPISIEQNSMSLGMSPSSKSKDKEKTEFPNKSMIYPYDSSENAAVHANAISTEYVDYIKKIDSSLINGISYTRNVNMNILKKQDGKVVSMNTSAAAFSTYPSKGDSFETDYLKSYYDVLAGSYPKNEKELVLVVDKYNQVDTNILEALGFSANSKNINFDSMIGTEYKLIYNDDYYTQSGKYFTVNGDTTNLENLYNNKNAVTLKISGIIRIKEDANVSNLSTGIVYSDQLAQDFIENAKNSQIVLAQKEAKYNVMNGNLLTEKTSTTTAAVHPTPSMATNTTSNVETKDDVLASLGATSSPTSISIYPVNFEAKDNITNYLDDWNKKLKEEDHIVYTDMASMITSLTGNIMDGITIVLVAFAGISLVVSMIMIGIIIYISVLERTKEIGVLRALGARKKDITRVFNAETFIIGFCSGGLGIAITYLLTIPVNSILYKFTDLNNVAQLNPLHAIALVITSIVLTMIGGAIPSKMAAKKDPVIALRSE
>CP014219.1|AUN24689.1|1023768_1025376_+|cell-shape-determining-protein
MKKKIYSSFIVLSLIISMALIYFLMPVFSVKFYSFYIVFIIIALLLSINVSLNKGKESSKIYGIPVILIGLFIVMFIISLPIFRASSYKSLLPTPKYEEFSKNITPIDIKEIPTVNQKYAELLADKKLGEETSLGSKVELGTLTLQNVNGKLYYVAPLVHSGFMKWLLNDSTPGYITVSATDDKDVKLVTKLNGKDIKIRYQPKGFLNDDLKRHIYLKGTMNRGITDLTFELDDKGNPYYTATIYENKVGMSGQKAVGTAIVNPETGEVKKYTVENTPKWVDRIQPQSFVENNLKKWGKYIKGFFNFSGQDKLKTTEGTGVIYNNGKCYYYTGLTSVGKDESSIGFALVDTRTQQTRIFKIAGATETASMKSAEGKVQNLGYTSTFPILINVDNVPTYFTTLNDKNDLTKMFAMISVTDYNIIGTGESITECKSNYIKNLASKGNLINVGSTGKEENITDTIERINSYVVGNSTIYTFILKDHKDKIFNAGISISNELPITKEGDKVNIRYVDTKQDTINITSFDNIEFKQQSIK
>CP014219.1|AUN24688.1|1021911_1022121_-|acetyltransferase
MDSTAELEKSKNFDERLSIVIDSSREEIVMDGIVPSSTYLAIRLVYNKLIGMIDIRHKLNDYLFQNDIL
>CP014219.1|AUN24698.1|1036803_1037568_-|MerR-family-transcriptional-regulator
MHYKIKEVADMAGISVRMLHHYDKIGLLDPESVSDAGYRLYSDENLDRLQQILFFKELNFPLQEIKIILDSPNFNKKEALETHKQLLLEKKIRLEKIIQSVDKTISSIEGGIKMNKKEVLGAFDMTEIEEHQKKYSEEVKNKYGNTSAYKESNEKTSKYTKEDWNNIMKDWDIIYKKLANLMDKNPDDKEVQEYIHQFREHISKNFYDCTPEIFRGLGELYVNDERFTANIDKYKTGLSKFLREAINVYCDNIK
>CP014219.1|AUN24699.1|1038273_1039755_+|cobyric-acid-synthase-CobQ
MAKIMIQGTASSVGKSLIVAALCRIFKQDGYSVCPFKSQNMSLNSYITLDGKEMGRAQVLQAYAAGLEPEAYMNPILLKPTSDKKSQIIVNGKVYGNSTAMEYHNLKIKFKDMLKEQFEKLEEDFDIVVMEGAGSPAEINLRDRDIVNMGMAELVDAPVLLVGDIDKGGVFASLAGTMLLLNEGEKERVKGTIINKFRGDVEILKPGLDMLEDIIHIPCLGVVPYTRLQLEDEDGAVEFNKKAYAPIDIAVIKMPHISNFTDLDALKSEEDVSIRFVTSKEEFKEPDLLIIPGSKNTIEDLLYLRQCGLEERIKEYSREGKIIGICGGYQVLGSKIKDPYKVETDLGEIDGLNLLDMETIFEKEKVTTRVSAKLINEETENIVYGYEIHMGISKYSENIKPLFKIYDKNGEKVDYFDGAINEKGNVMGTYIHGVFDGVVFREKIINELRVKKGLKKKKSQMYEHMREKELDKLADIVRQSLDMEKIYSIIGMK
>CP014219.1|AUN24700.1|1039756_1040719_+|cobalamin-biosynthesis-protein
MYLNITTNFIDIIIAVFIDWIVGDPYWFPHPVIYIGKLISFLEKKFRARVKNEENLKIYGEVIVMIVCFASFLIPFMILQAFKFNFYIYHGLNILIIWTTLAAKCLHEEAIKIYYALYKENIEEARLKLSYIVGRETKDLIGNEIMRADIETVAENASDGVIAPLFYAIIGGAPLAMMYKGINTMDSMLGYLNDKYRYIGFFPAKVDDIFNFIPARLTGILMCISAPIVGGNPFKSFKIMIRDRKNHKSPNCAYPEGATAAALKIQLGGTNVYFGQVVEKPTIGDKIKELAPIHIKESIKLMYASEALMIVMCTIIFKLF
>CP014219.1|AUN24701.1|1040937_1042026_+|aspartate-aminotransferase
MHGGDIYTEGILKEKELIDFSSNINPLGLPDSFKDNLQEALNWVQVYPDIQYRNLKRNLIDYLSFSLGYFYKEKVEKPNIKEENLVLGNGAVEIIDLAISNLKSISILVPSFVEYELCAKKWNVQIDYCNLNEDMTYNYENIKKSLEKTEGIILGNPNNPNGSVIDKEKFIYILDYCEKNNKIIILDEAFIEFTGKNSFSFLNLCERYKCIFIIRALTKFFSMPGIRFGYGISFNNEFLNKIREKQNPWNINCFAEIAVKYVLKDEDFIEKSINYIEKEKIFMHENLKKCDLFHSVYSTYSNFVLCKLKDITGDELKNRLLEKGFVLRVCKDFKNLNNNYVRFAIKTRELNQALVNILKEIK
>CP014219.1|AUN24702.1|1042299_1043019_+|cobalamin-biosynthesis-protein-CbiM
MKKKYLFLLTTALVLALSQSAYAMHIAEGFLPPKWAALYFVLSAPFIVIGVKHIRQKTKKNKDLKMLLAVVAAYAFILSAMKIPSVTGSCSHPTGTGLAAIIFGPFVASVVGVIVLLFQAILLAHGGITTLGANTFSMGIVGPIVSYLIYKGLKNKNQKLAVFLAASLGDLATYTVTSLQLALSFPAKTGGVMAAFAKFATIFSLTQIPLAIIEGLITIMIFEFMMKYSKEELKTLSEV
>CP014219.1|AUN24703.1|1043022_1043322_+|cobalt-ABC-transporter-substrate-binding-protein-CbiN
MKKQNIIITIVSVVVILASLFIGGARGGEFAGADDQAEGIIEEMNKDYEPWFESIWEPPSGEIESLLFASQAALGAGVIGYYIGKKKNAKNNNASIKNQ
>CP014219.1|AUN24704.1|1043284_1043983_+|cobalt-ECF-transporter-T-component-CbiQ
MLRTIMLLSKTSKLSNIHPLEKVILSIIPIVILGFTQNYIIVFCNILFFLFMNLISKNNKKIFAKITLEVTAFAAISSITFAFDYGIVYTLTLIFKSVSAGLCLSFFSLTTPIDDMLYCLGKKEYLKDICDIAKGMERFLVVINDEYNILYSSIKSRGGFDTFKLTIRNTGKMAALLFINTLSRWKIIKEGLDSRGYVGYMPYLDRNFDFSYIRFLSILSYIILILLLVIFF
>CP014219.1|AUN24705.1|1044391_1045054_+|precorrin-2-dehydrogenase
MEWINLQEKYNFIALKSKRIRILIIGGGRAAFIKGKAFLDRGCSLYILAPKFSKDVLDLKTYDNVEFIKNNYDEKYILDKHLVVIATEDEEVNNEIRNNCDALSKLYIDCSDKDKSLCFNSFQRESKTMVLALNNKIGCPKATYFIGEKIKKDLERYDNYIEYVTYIRSITKNNPMKDEIIDFICSNDFHFFFEKGYGNLILSMFYGGMDFEFCNSHTKK
>CP014219.1|AUN24706.1|1045022_1045895_+|hydroxymethylbilane-synthase
MNFVIATRRSKLAQVQTEIIIDLLNKKHDIECEKLLIETVGDKILEVSLDKIGGKGLFVKDIEVAMLEQRADAAVHSMKDVPYEMPKGFEIIAIPEREDVRDAFISLDNIKFKDLRKGAKIGTSSRRRAAQLKLLRPDLDIVPIRGNVQTRIEKIKKENLDGIILAVAGLKRVNLDHLITDYFDTKEMVPAIGQGALGIEVMEEHPKKDLFKDLDHYNSKICVLAERAFMRELDGDCHSTIGAYASIKDNIMHIIGIFERKNKIIKKEITGTKDQYEKLGISLAEHILKD
>CP014219.1|AUN24707.1|1046030_1047491_+|uroporphyrinogen-III-C-methyltransferase
MSKVYLIGAGPGDEELITLKAIRALKKCTAVMYDRLANGELLKYLAPNCEIYYCGKEPGCHYKSQDEINKMLVKLAKEGHIVGRIKGGDPYVFGRGGEEALDILEENIEFEVIPGVTSPVSVLNYAGIPITHRGISRGFHIFTAMTKDKLDIDWKSVVNIGGTLVFLMGLGRLELITKGLIENGMDKEGKVAVVMKGTTSKQKKVIGNLENIVEKVKEAKLESPVIIVVGEVVSFSDKLNWYEKKPLFGRNICITRTKEQAKELKVQLLDLGAEVTEINSIEIKNTEDNLKSYLSKLKEYDYIALTSVNAVKIFFDYLIKENIDIRNINAKFAAIGPATSEAIRIRGIMPSIKSKHFVAESLFEEMRKHIQKGDKILVPRSKDARPFLVDALRKEGCTVDEVHIYGTLCGQCTYTERFENADTVLFTSPSTVRNMISMVGIDSIKEKSIIAIGPITARELDKNNIECSICDEYSINGIIDKLLDLN

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Crispr_ID: CP014219_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP014219_3

2330322-2330545

TypeIII

III-B

Consensus_repeat	Method
TTAAATACATCTTATGTTACTGTTC	CRISPRCasFinder

3 spacers

csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

The CRISPR arrays of CP014219_3

>merge|CP014219|3|2330322-2330545|CRISPRCasFinder
TTAAATACATCCTATCTTAGTGCTCAATCTACCAGAAAAGATACAACAGGCAATAAGAAGCCAATTTAAATACATCCCATGTTACTATTCAACCTTTGGTCTTGTAGCTGGTGTAACTGTTTTAACATTATTTAAATACATCTCATGTTAATGTTCAATGGACACAATACTCTCCAGCGGGAATGGCACTAATAAAATTTAAATACATCTCATGTTAATGTTCA

>CP014219|3|3|2330322-2330545|CRISPRCasFinder
TTAAATACATCCTATCTTAGTGCTC	AATCTACCAGAAAAGATACAACAGGCAATAAGAAGCCAAT
TTAAATACATCCCATGTTACTATTC	AACCTTTGGTCTTGTAGCTGGTGTAACTGTTTTAACATTAT
TTAAATACATCTCATGTTAATGTTC	AATGGACACAATACTCTCCAGCGGGAATGGCACTAATAAAAT
TTAAATACATCTCATGTTAATGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
CP014219.1\|AUN25858.1\|2333525_2334617_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863
CP014219.1\|AUN25864.1\|2339861_2340476_-\|galactoside-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
CP014219.1\|AUN25863.1\|2339324_2339819_-\|hypothetical-protein	unknown	unknown	unknown
CP014219.1\|AUN25848.1\|2323349_2324714_-\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|236502
CP014219.1\|AUN25849.1\|2324726_2325011_-\|PTS-maltose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|99905
CP014219.1\|AUN25855.1\|2329698_2330187_+\|50S-ribosomal-protein-L7ae	unknown	unknown	gnl\|CDD\|227595
CP014219.1\|AUN25852.1\|2326452_2326854_-\|hypothetical-protein	unknown	unknown	unknown
CP014219.1\|AUN25856.1\|2331335_2332025_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
CP014219.1\|AUN25853.1\|2327191_2327938_-\|transpeptidase-transglycosylase	unknown	unknown	gnl\|CDD\|236545
CP014219.1\|AUN25851.1\|2325500_2326217_-\|transaldolase	unknown	unknown	gnl\|CDD\|183481
CP014219.1\|AUN25850.1\|2325039_2325477_-\|PTS-maltose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|238129
CP014219.1\|AUN25861.1\|2336425_2336824_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
CP014219.1\|AUN25859.1\|2334606_2335662_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|380071
CP014219.1\|AUN25854.1\|2328277_2328871_-\|acyl-phosphate-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|172889
CP014219.1\|AUN25847.1\|2321044_2323138_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|226234
CP014219.1\|AUN25862.1\|2336842_2338993_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
CP014219.1\|AUN25860.1\|2335663_2336413_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
CP014219.1\|AUN25865.1\|2340799_2341153_+\|peptidase-M24	unknown	unknown	gnl\|CDD\|379790
CP014219.1\|AUN25846.1\|2320365_2320719_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379915
CP014219.1\|AUN25857.1\|2332041_2333523_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|187878

Protein	Function_ID	Function_description	E-value
CP014219.1\|AUN25858.1\|2333525_2334617_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	3.88011e-18
CP014219.1\|AUN25864.1\|2339861_2340476_-\|galactoside-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	2.33547e-98
CP014219.1\|AUN25848.1\|2323349_2324714_-\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
CP014219.1\|AUN25849.1\|2324726_2325011_-\|PTS-maltose-transporter-subunit-IIBC	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	2.52704e-28
CP014219.1\|AUN25855.1\|2329698_2330187_+\|50S-ribosomal-protein-L7ae	gnl\|CDD\|227595	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis].	0.00379916
CP014219.1\|AUN25856.1\|2331335_2332025_-\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	0.00384193
CP014219.1\|AUN25853.1\|2327191_2327938_-\|transpeptidase-transglycosylase	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	1.38627e-11
CP014219.1\|AUN25851.1\|2325500_2326217_-\|transaldolase	gnl\|CDD\|183481	PRK12376, PRK12376, putative translaldolase; Provisional.	3.52947e-157
CP014219.1\|AUN25850.1\|2325039_2325477_-\|PTS-maltose-transporter-subunit-IIBC	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	9.05568e-38
CP014219.1\|AUN25861.1\|2336425_2336824_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	5.57512e-09
CP014219.1\|AUN25859.1\|2334606_2335662_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|380071	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain. Clustered, regularly interspaced, short palindromic repeat (CRISPR) loci play a pivotal role in the prokaryotic host defense system against invading genetic materials. The CRISPR loci are transcribed to produce CRISPR RNAs (crRNAs), which form interference complexes with CRISPR-associated (Cas) proteins to target the invading nucleic acid for degradation. The interference complex of the type III-A CRISPR-Cas system is composed of five Cas proteins (Csm1-Csm5) and a crRNA, and targets invading DNA. This entry represents the C-terminal domain found in Csm4. Csm4 structurally resembles Cmr3, a component of the type III-B CRISPR-Cas interference complex. Studies indicate that Csm3-Csm4 complex binds single-stranded RNA in a non-sequence-specific manner. Structural analysis show, Csm3 and Csm4 have one and two ferredoxin-like folds (also known as an RRM-like fold), respectively. The long beta-hairpin inserted into the C-terminal ferredoxin-like fold of Csm4, is well-conserved in the Cmr3 structure. The corresponding beta-hairpin of Cmr3 binds the D1 domain of Cmr2, as observed in the Cmr2-Cmr3 complex structure. Furthermore, it is suggested that the hairpin of Csm4 is responsible for the interaction with Csm1 (ortholog of Cmr2).	3.43304e-17
CP014219.1\|AUN25854.1\|2328277_2328871_-\|acyl-phosphate-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|172889	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase.	4.80542e-92
CP014219.1\|AUN25847.1\|2321044_2323138_-\|sugar-transporter	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.72803e-58
CP014219.1\|AUN25862.1\|2336842_2338993_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	4.54862e-98
CP014219.1\|AUN25860.1\|2335663_2336413_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.68348e-77
CP014219.1\|AUN25865.1\|2340799_2341153_+\|peptidase-M24	gnl\|CDD\|379790	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain.	2.05273e-11
CP014219.1\|AUN25846.1\|2320365_2320719_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379915	pfam17032, zinc_ribbon_15, zinc-ribbon family. This zinc-ribbon region is found on a set of largely microsporidia-specific proteins.	0.000183435
CP014219.1\|AUN25857.1\|2332041_2333523_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	3.51889e-09

>CP014219.1|AUN25855.1|2329698_2330187_+|50S-ribosomal-protein-L7ae
MISKKIIAFIAMTIMMISLLIGCSNNTMDKVYNDNIKIASVYDTFGLDKSDEIIESGIYKGKLKLSGSGTIWTYESSSDFDLKVPYILSVKSGKAKIVLISPDNTVVNLVENTDKATMKGTTSLTLPIKKGNNRIKLVGYKKADIDIELHIEKGTFEKISFN
>CP014219.1|AUN25854.1|2328277_2328871_-|acyl-phosphate-glycerol-3-phosphate-acyltransferase
MIIIITSIISFLLGSIPTGYFITKKTCGIDIRTKGSGNIGSTNVKRIVGTKISIITQTIDVLKGIIPVVLGISLSKIVKLPVSIDTYLSIIAIAAILGHDYTPFLKFKGGKGVNTTLGVFIFIAPIPTLTGLAVYFILGLFIRIVSIRSISIGITIPIMCIITKLPIQIIISTTIACILMIIRHKDNLVRLIRGEEK
>CP014219.1|AUN25853.1|2327191_2327938_-|transpeptidase-transglycosylase
MDKFRNMKKSHIALLVIMYMVLMGSLPRFTGWATIFSAIAVGGYFLKNKKDLKELTRKKKNFIFAGIIILAIIGSFNVAVGNNIQNEKLLAEKSKQEQQIKKEQEEKKLAEEQKRIQEEEARKKAEEEKRKQEEEAKKKTEEEAKKKALEEQKKQEELKRKQEEENKVKAENEQAQAAFAQSTGKGDSNSQSNESQNADDNQNYTVYKTRTGSKYHSSGCRYLKKSCYETTVSQARNEGLTPCRVCNP
>CP014219.1|AUN25852.1|2326452_2326854_-|hypothetical-protein
MNILISTCNIGIPVLMIFIGILYKCNLYKKIDKTLDLIVPIAMFFTGFSERDREHLYKNTNKLALVNRKCSLIWSISGVCTLLLTIISLILNKSDIYNTSVILLEPEFLILVIVFITVEYVLKRNFYKKIQQS
>CP014219.1|AUN25851.1|2325500_2326217_-|transaldolase
MKYNDLKIKIFADGADLNGMLDAYNKGIVKGFTTNPSLMKKAGITDYKEFAKEVLAKIKDMPVSFEVFSDDLETMEKEAEVLGNLGENVYIKIPVTNTKGESTAPLIKKLSEKGYHLNVTAIFTIDQVKEVVGALKSGVDSIVSVFAGRIADTGEDPVKIMKEASKICKTKEGVELLWASCREFYSIVEADKCGCEIITVTNDVLKKMPNMGKDLKEYSIETVRGFYKDASSLGFSIL
>CP014219.1|AUN25850.1|2325039_2325477_-|PTS-maltose-transporter-subunit-IIBC
MLKNYINDQVVEVNVEVKNWEEAVRLGGKLLEEDGAVEHSYIDAMVDTVKNMGPYIVIAPGIAMPHARPEAGAKNIRIGLLKLKNPVNFGNEEHDPVDMVIFLCAVDNKAHIEVLGELVQLIEDDDFLKIVRNASTKKEILDYIK
>CP014219.1|AUN25849.1|2324726_2325011_-|PTS-maltose-transporter-subunit-IIBC
MNILTVCGNGIGSSLMLAMKIEEICKENGIAANVESTDFNSAQGKKADLIVTVKELAEQFEGRDVAVVRSYINKKKITEDVLEIIKQKDEELKK
>CP014219.1|AUN25848.1|2323349_2324714_-|PTS-ascorbate-transporter-subunit-IIC
MLGLLQFLRDVLKQPALLMGIMALVGLVALKKPGHKVLTGTLKPILGYLMLGAGADFIVANLEPLGGMIQTGFNITGVVPNNEAIVAVAQKVLGVETMSILVVGLLINLVIARFTKYKYVFLTGHHSFFMACLLSAVLGTSGMKGTELILFGGFLLGAWSAISPAIGQKYTLKVTDGDEIAMGHFGSLAYYVSAWVGSKVGKPEESTENIEIPEKWGFLRDTTISTAITMMVFYIVAAVAAGPEYVSKLSDGMSPILFAIMSSLKFAVGVTIVYNGVRMILGDLIPAFQGIATKIIPDAIPAVDCAVFFPYAPTAVIIGFVSSFIGGIIGMVLLGVAGGVLIIPGLVPHFFCGSTAGIFGNATGGKKGAVIGSFVNGLLITFAPALLLPVLSTLGFKNTTFGDFDFGVLGIIIGKTSNLAGKTGIIIIAMLMLVALIVPNFIKTKSKALNNIEE
>CP014219.1|AUN25847.1|2321044_2323138_-|sugar-transporter
MLNKRCSNILQMIVNNEKPITIKEISKKVNKSPRTVRYDLDKIDDYLTEIEFPKLERKSNLGISLDLKDEEIKKLFKIIGKINNYDYVLSQKERVFYIIYELLNKSEFATINMLSDRMMVSRSTIINDLIEVKKWLSENKITLESSKGQGIKILGRERDLRRAAVKLFFQSMDSINFFNVTTLKLFNDIDIDFIRNTIKIAEEQMETSFSDDAFNNLVIHIAIAIKRIELSKDIIMDSEELKNLRKTAEYVIASGIAKMLEDRFKISIPEDEIGYITIHILGSNTSTLENIVKDDWIYLHLIVFKLIENVENITGINFSKDNKLFDSLAQHIRPAIYRLKHDIKVKNPLIEEIKEKYSYIFESIEEGVKFIEEDIGDSVNQEEIGYLTLHFMASIERSKNKKHRKPNVLIVCATGIGTSKFISNKLKSIFDINIIDTISSHTMEKILKYNKNIDLIVTTIPLKVKGIKCIEVNTFLTEKNISELGLYFAKFIRNNSEECNGSCKYEERDKVQEILNIVKENCTIHDYYKLRNKLALYLNIKDPTLTEDHKPSLKELLKPDFIKLNEEAENWEDAVRKSGEILMNNGCVKESYIDAMVNTVKNMGPYIVIAPGIAMPHAAPEDGVLKTGISMLTLKDPISFGNSEHDPVSVIISICSIDKVNHMKALKELMSIMDQEDFISKVKNIKASSEIDSILYS
>CP014219.1|AUN25846.1|2320365_2320719_-|zinc-ribbon-domain-containing-protein
MIIWGWGKVTKKIIGAVFERTCNYCNTDEVWNLCVVRTWFTLFFIPIIPYKKQYCIACPKCWSYIELTQEEFEKIKIDITSSSNNINEKVVTDNIKYAGKTETQINYLKQMEEYSNK
>CP014219.1|AUN25856.1|2331335_2332025_-|hypothetical-protein
MHYYQLKIRVKLENNINYIQAPYLIGTFINNCMLKNDMLKNIHKKKIYKYVYDSFFPIEKDGIYKREKYYNIQLRTINLNLINKLAIALYNHKFNGIKTVNIDLEVMEPTKINQLYTLKPSIVTITGQPWIKNKHSIDVLIGNLNANLEKKYKQIFNEELENNKSFIKKIKVVNNIPIKYEYKNIILLGNKFEIIVNEDEVSQRKATIALGMGLGEKGSSLGAGFCIYR
>CP014219.1|AUN25857.1|2332041_2333523_-|hypothetical-protein
MDNVLIINLGNSDIEKEGNKIEFGEFREKTKKIYEQLEGANKEEKQEIFKYLDFPIIKAIIDKVDGELKNEKLDKVILAYTNQKFNNNKDTVYLYEILKQKKHLVNNLETDNQDIWEKRLKETNFKQSYNIDFDPSDIDRMYNFYAEEINELNNKKIKKLFFSITGGASAMNFALLINAIEKFSGQLIPCYLSRGKKVAYKVNIAKNLRKQILKRDIKILINNKDYFAAIKMLENLEDGIVDDMSKLELKNIILALKYAEARIQFNFDKCKEYGEKCLDNTAEYREEFSQAVKDILIEKDDYINRLVELKNNAIYLYKKGSYTDFLGRVYRFQEAVYEHILGQYDLIIEKSNGVKINKEILKSRYSDKKEILDNIKIAGNKLEYEKNLTVDAMSKIISTLIDNDDVRNIVNRMEEIKDVKQLRNKSILAHGFEGISKEKIQGKLNCEEKDISKLLEEVMCKILVLFKIGTIEDMFYCENSRYDCILIEMIEKL
>CP014219.1|AUN25858.1|2333525_2334617_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MNYDKIILNLKGQVLTPVHIGCGKKYSPYLDIIKNENKITVLDEEKIIEKLVLNDEIFEEYINILKNKSPNAIEKYNIINILKNNKIEIGEVKKYDLICGNSFNNLIDVNQSIKTKGIPYIPGSSIKGSIRTALIYNKLLKNGIDFGKIKEISNLKNKYYCYLGQDIFRQNDKLIYDDMMKNLLVRDTDIISNNKVKVYLCRAVNLYESIKNGNISTSVKSLNECIEEYTDFTFSIIIKNSLISKEELYNNINSFYEKILLKEIQEIEKLKLNIINSQYKLLLNEINEFRKYNNGFILRIGGMKGIFSNTIDSILSKKELEDIRNAHKNKRKKTGEFPTTKWCVMDEYENIKTTLGWIKIMEE
>CP014219.1|AUN25859.1|2334606_2335662_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKKVILKIDNETKFHIGNGQEILEYIPSDKLYSAIINSLALTYSKYELNKLIEIINEKLQISSAFMGIKIKNKNKGIEKSIDFLPRPYMYIGNNNIISTQLLNRKKFKKINYVSNNVFLDFNKHYDSKKNFINYDFQQGYIIGEKYYVTDREINFLSEDEKKYLEKYKPIINESVQRNYINRFSKESIGTYYDNFKVIVQEKYKDMQLIPYFYFYIKGDLEIDKIMYAIIEGGIGGKRSLGAGTIKDISIEECDDFKENGERFINISMIYPDKQELNYIESYALENRNGYIYSQGPTDLKKPWIRMIKEGGVFTKRIKGNINDINVKDIDYPIYTYGKAFFITLGGNLDEL
>CP014219.1|AUN25860.1|2335663_2336413_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MNLLMGKIFIDGDIILKTGLRIGGGNNSIEIGGIDNNVIKNHRGEPYIPGSSLKGKLRSLLEISTNRLKDGRPCNCGECSICSIFGVGANENKQNLPTRIIVRDAFLNEDIKKQMYEKQGQFKRLELNYTESKYENTIDRLNSKATPRLIERVPEGASFRLQIIYSVFNNKDIDNFNDLIKGMKLLEDDYLGSNGSRGYGQVEFDNLNIKIKVIKDYKTKEVLNKSSLTDIDSVCLKEKLNELIEIKGV
>CP014219.1|AUN25861.1|2336425_2336824_-|type-III-A-CRISPR-associated-protein-Csm2
MEKDYKTDKFREYEEYFKKNVLTLDKINYDQFIEKSKDYSRLLKNNGLTTSMIRKIYNEILKANEAIDLKRLRPILAYTYGRNRVKGLQSLFYTLDDLLKRLNLKTNYLEIENVKEFLEVIIAYMKFYGDRY
>CP014219.1|AUN25862.1|2336842_2338993_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MHICYKSLLYSFLRYVESIDKAMYKENAFKLKDKLLNPILQESYELVTKNIKKKKCKDGTFRLMNIFSNINDSKRKKFNLLKEIDINRYDNILKENGEEIDKAYCINYVKSIIKKLLQNDNEKIYFLMSKYCSNVPFINSKNCDISLFDIAKVTAAIATCKEKNKEEYILIKGDFSGIQSFIFKTSSDGALKTLKGRSVYLTLLQEICAKYIVKELGLSLCNILYSGGGNFYILASKSDENKIKLLRKQLSKLILKAYNGEIYLALGYLSFKEEDFKNFNILWKNIGEEVGFLKSKRWSELNLKESFNEIFGPLDLGGRREHSCRLCGCINKNLKEGMCDLCISFKDFSMEMKKANFYCEKIIPKADISLHNNVKDIFHELGFEIKFSDKPLKGFKNYIINSCDFEAYDGFIFKSVKLSDESLDYMVQKQKGNNKVGVIKLDIDNLGKLFINGLGNEGSISKIISLSRNISMFFEGYIENILYKSKRLDKLKEYLKTSDWEKRVTIIFSGGDDTFIIGRYEEILEFALLIREVFEEFVGGEQLTFSAGIGIFDYNYPVINIAEDTERCLELAKNHIEGNEIYAKKNKVCIMGQVFTWNEFLEIIKLKNLIEEIYLLSSKKSIFEKINKSTLGFKAVVEGGKRLNYIKLHRLAYYLRDLNNASNKNLKNKVEELIEFYEELCLKAFMGNNKKNYNINNIMIIPVASKLAQYNYRIIN
>CP014219.1|AUN25863.1|2339324_2339819_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPMKHIMSYPTEIRKRVESLPQYKDAIQKKEKKHLTVKIIAVFMFAIIFAVVAYFSGAKSFSKAYIHVFTLFFVVNIYDMIVLDIGLFCHSKKTRIPGTEDMDKEYRNPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>CP014219.1|AUN25864.1|2339861_2340476_-|galactoside-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADVHIESPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGIGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAIGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>CP014219.1|AUN25865.1|2340799_2341153_+|peptidase-M24
MHLFINKNKLSDEIKSSLKKNAALFIHPYNKIYKEVKKFTNSDVVLVHPDRINYELYNNIDKEVITEISSSNKLDAFPAEQGRFICPSFEPISSFGEHVTIVTCIFLMENSFMVVTV

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Crispr_ID: CP014219_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP014219_5

2331215-2331305

TypeIII

III-B

Consensus_repeat	Method
TTAAATACATCTTATGTTACTGTTC	CRISPRCasFinder

1 spacers

csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

The CRISPR arrays of CP014219_5

>merge|CP014219|5|2331215-2331305|CRISPRCasFinder
TTAAATACATCCTATGTTAATATTCAATCAAAGAATATGTAAGCATTTAAGGAAGTTAAGAAAAATTTAAATACATCCCATATTAAGGTTC

>CP014219|5|5|2331215-2331305|CRISPRCasFinder
TTAAATACATCCTATGTTAATATTC	AATCAAAGAATATGTAAGCATTTAAGGAAGTTAAGAAAAAT
TTAAATACATCCCATATTAAGGTTC

Protein	Signature genes	Signature genes Name	Protein_function
CP014219.1\|AUN25858.1\|2333525_2334617_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863
CP014219.1\|AUN25864.1\|2339861_2340476_-\|galactoside-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
CP014219.1\|AUN25863.1\|2339324_2339819_-\|hypothetical-protein	unknown	unknown	unknown
CP014219.1\|AUN25848.1\|2323349_2324714_-\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|236502
CP014219.1\|AUN25849.1\|2324726_2325011_-\|PTS-maltose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|99905
CP014219.1\|AUN25855.1\|2329698_2330187_+\|50S-ribosomal-protein-L7ae	unknown	unknown	gnl\|CDD\|227595
CP014219.1\|AUN25852.1\|2326452_2326854_-\|hypothetical-protein	unknown	unknown	unknown
CP014219.1\|AUN25856.1\|2331335_2332025_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
CP014219.1\|AUN25853.1\|2327191_2327938_-\|transpeptidase-transglycosylase	unknown	unknown	gnl\|CDD\|236545
CP014219.1\|AUN25851.1\|2325500_2326217_-\|transaldolase	unknown	unknown	gnl\|CDD\|183481
CP014219.1\|AUN25850.1\|2325039_2325477_-\|PTS-maltose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|238129
CP014219.1\|AUN25861.1\|2336425_2336824_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
CP014219.1\|AUN25859.1\|2334606_2335662_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|380071
CP014219.1\|AUN25854.1\|2328277_2328871_-\|acyl-phosphate-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|172889
CP014219.1\|AUN25847.1\|2321044_2323138_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|226234
CP014219.1\|AUN25862.1\|2336842_2338993_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
CP014219.1\|AUN25860.1\|2335663_2336413_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
CP014219.1\|AUN25865.1\|2340799_2341153_+\|peptidase-M24	unknown	unknown	gnl\|CDD\|379790
CP014219.1\|AUN25846.1\|2320365_2320719_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379915
CP014219.1\|AUN25857.1\|2332041_2333523_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|187878

Protein	Function_ID	Function_description	E-value
CP014219.1\|AUN25858.1\|2333525_2334617_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	3.88011e-18
CP014219.1\|AUN25864.1\|2339861_2340476_-\|galactoside-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	2.33547e-98
CP014219.1\|AUN25848.1\|2323349_2324714_-\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
CP014219.1\|AUN25849.1\|2324726_2325011_-\|PTS-maltose-transporter-subunit-IIBC	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	2.52704e-28
CP014219.1\|AUN25855.1\|2329698_2330187_+\|50S-ribosomal-protein-L7ae	gnl\|CDD\|227595	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis].	0.00379916
CP014219.1\|AUN25856.1\|2331335_2332025_-\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	0.00384193
CP014219.1\|AUN25853.1\|2327191_2327938_-\|transpeptidase-transglycosylase	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	1.38627e-11
CP014219.1\|AUN25851.1\|2325500_2326217_-\|transaldolase	gnl\|CDD\|183481	PRK12376, PRK12376, putative translaldolase; Provisional.	3.52947e-157
CP014219.1\|AUN25850.1\|2325039_2325477_-\|PTS-maltose-transporter-subunit-IIBC	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	9.05568e-38
CP014219.1\|AUN25861.1\|2336425_2336824_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	5.57512e-09
CP014219.1\|AUN25859.1\|2334606_2335662_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|380071	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain. Clustered, regularly interspaced, short palindromic repeat (CRISPR) loci play a pivotal role in the prokaryotic host defense system against invading genetic materials. The CRISPR loci are transcribed to produce CRISPR RNAs (crRNAs), which form interference complexes with CRISPR-associated (Cas) proteins to target the invading nucleic acid for degradation. The interference complex of the type III-A CRISPR-Cas system is composed of five Cas proteins (Csm1-Csm5) and a crRNA, and targets invading DNA. This entry represents the C-terminal domain found in Csm4. Csm4 structurally resembles Cmr3, a component of the type III-B CRISPR-Cas interference complex. Studies indicate that Csm3-Csm4 complex binds single-stranded RNA in a non-sequence-specific manner. Structural analysis show, Csm3 and Csm4 have one and two ferredoxin-like folds (also known as an RRM-like fold), respectively. The long beta-hairpin inserted into the C-terminal ferredoxin-like fold of Csm4, is well-conserved in the Cmr3 structure. The corresponding beta-hairpin of Cmr3 binds the D1 domain of Cmr2, as observed in the Cmr2-Cmr3 complex structure. Furthermore, it is suggested that the hairpin of Csm4 is responsible for the interaction with Csm1 (ortholog of Cmr2).	3.43304e-17
CP014219.1\|AUN25854.1\|2328277_2328871_-\|acyl-phosphate-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|172889	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase.	4.80542e-92
CP014219.1\|AUN25847.1\|2321044_2323138_-\|sugar-transporter	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.72803e-58
CP014219.1\|AUN25862.1\|2336842_2338993_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	4.54862e-98
CP014219.1\|AUN25860.1\|2335663_2336413_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.68348e-77
CP014219.1\|AUN25865.1\|2340799_2341153_+\|peptidase-M24	gnl\|CDD\|379790	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain.	2.05273e-11
CP014219.1\|AUN25846.1\|2320365_2320719_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379915	pfam17032, zinc_ribbon_15, zinc-ribbon family. This zinc-ribbon region is found on a set of largely microsporidia-specific proteins.	0.000183435
CP014219.1\|AUN25857.1\|2332041_2333523_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	3.51889e-09

>CP014219.1|AUN25855.1|2329698_2330187_+|50S-ribosomal-protein-L7ae
MISKKIIAFIAMTIMMISLLIGCSNNTMDKVYNDNIKIASVYDTFGLDKSDEIIESGIYKGKLKLSGSGTIWTYESSSDFDLKVPYILSVKSGKAKIVLISPDNTVVNLVENTDKATMKGTTSLTLPIKKGNNRIKLVGYKKADIDIELHIEKGTFEKISFN
>CP014219.1|AUN25854.1|2328277_2328871_-|acyl-phosphate-glycerol-3-phosphate-acyltransferase
MIIIITSIISFLLGSIPTGYFITKKTCGIDIRTKGSGNIGSTNVKRIVGTKISIITQTIDVLKGIIPVVLGISLSKIVKLPVSIDTYLSIIAIAAILGHDYTPFLKFKGGKGVNTTLGVFIFIAPIPTLTGLAVYFILGLFIRIVSIRSISIGITIPIMCIITKLPIQIIISTTIACILMIIRHKDNLVRLIRGEEK
>CP014219.1|AUN25853.1|2327191_2327938_-|transpeptidase-transglycosylase
MDKFRNMKKSHIALLVIMYMVLMGSLPRFTGWATIFSAIAVGGYFLKNKKDLKELTRKKKNFIFAGIIILAIIGSFNVAVGNNIQNEKLLAEKSKQEQQIKKEQEEKKLAEEQKRIQEEEARKKAEEEKRKQEEEAKKKTEEEAKKKALEEQKKQEELKRKQEEENKVKAENEQAQAAFAQSTGKGDSNSQSNESQNADDNQNYTVYKTRTGSKYHSSGCRYLKKSCYETTVSQARNEGLTPCRVCNP
>CP014219.1|AUN25852.1|2326452_2326854_-|hypothetical-protein
MNILISTCNIGIPVLMIFIGILYKCNLYKKIDKTLDLIVPIAMFFTGFSERDREHLYKNTNKLALVNRKCSLIWSISGVCTLLLTIISLILNKSDIYNTSVILLEPEFLILVIVFITVEYVLKRNFYKKIQQS
>CP014219.1|AUN25851.1|2325500_2326217_-|transaldolase
MKYNDLKIKIFADGADLNGMLDAYNKGIVKGFTTNPSLMKKAGITDYKEFAKEVLAKIKDMPVSFEVFSDDLETMEKEAEVLGNLGENVYIKIPVTNTKGESTAPLIKKLSEKGYHLNVTAIFTIDQVKEVVGALKSGVDSIVSVFAGRIADTGEDPVKIMKEASKICKTKEGVELLWASCREFYSIVEADKCGCEIITVTNDVLKKMPNMGKDLKEYSIETVRGFYKDASSLGFSIL
>CP014219.1|AUN25850.1|2325039_2325477_-|PTS-maltose-transporter-subunit-IIBC
MLKNYINDQVVEVNVEVKNWEEAVRLGGKLLEEDGAVEHSYIDAMVDTVKNMGPYIVIAPGIAMPHARPEAGAKNIRIGLLKLKNPVNFGNEEHDPVDMVIFLCAVDNKAHIEVLGELVQLIEDDDFLKIVRNASTKKEILDYIK
>CP014219.1|AUN25849.1|2324726_2325011_-|PTS-maltose-transporter-subunit-IIBC
MNILTVCGNGIGSSLMLAMKIEEICKENGIAANVESTDFNSAQGKKADLIVTVKELAEQFEGRDVAVVRSYINKKKITEDVLEIIKQKDEELKK
>CP014219.1|AUN25848.1|2323349_2324714_-|PTS-ascorbate-transporter-subunit-IIC
MLGLLQFLRDVLKQPALLMGIMALVGLVALKKPGHKVLTGTLKPILGYLMLGAGADFIVANLEPLGGMIQTGFNITGVVPNNEAIVAVAQKVLGVETMSILVVGLLINLVIARFTKYKYVFLTGHHSFFMACLLSAVLGTSGMKGTELILFGGFLLGAWSAISPAIGQKYTLKVTDGDEIAMGHFGSLAYYVSAWVGSKVGKPEESTENIEIPEKWGFLRDTTISTAITMMVFYIVAAVAAGPEYVSKLSDGMSPILFAIMSSLKFAVGVTIVYNGVRMILGDLIPAFQGIATKIIPDAIPAVDCAVFFPYAPTAVIIGFVSSFIGGIIGMVLLGVAGGVLIIPGLVPHFFCGSTAGIFGNATGGKKGAVIGSFVNGLLITFAPALLLPVLSTLGFKNTTFGDFDFGVLGIIIGKTSNLAGKTGIIIIAMLMLVALIVPNFIKTKSKALNNIEE
>CP014219.1|AUN25847.1|2321044_2323138_-|sugar-transporter
MLNKRCSNILQMIVNNEKPITIKEISKKVNKSPRTVRYDLDKIDDYLTEIEFPKLERKSNLGISLDLKDEEIKKLFKIIGKINNYDYVLSQKERVFYIIYELLNKSEFATINMLSDRMMVSRSTIINDLIEVKKWLSENKITLESSKGQGIKILGRERDLRRAAVKLFFQSMDSINFFNVTTLKLFNDIDIDFIRNTIKIAEEQMETSFSDDAFNNLVIHIAIAIKRIELSKDIIMDSEELKNLRKTAEYVIASGIAKMLEDRFKISIPEDEIGYITIHILGSNTSTLENIVKDDWIYLHLIVFKLIENVENITGINFSKDNKLFDSLAQHIRPAIYRLKHDIKVKNPLIEEIKEKYSYIFESIEEGVKFIEEDIGDSVNQEEIGYLTLHFMASIERSKNKKHRKPNVLIVCATGIGTSKFISNKLKSIFDINIIDTISSHTMEKILKYNKNIDLIVTTIPLKVKGIKCIEVNTFLTEKNISELGLYFAKFIRNNSEECNGSCKYEERDKVQEILNIVKENCTIHDYYKLRNKLALYLNIKDPTLTEDHKPSLKELLKPDFIKLNEEAENWEDAVRKSGEILMNNGCVKESYIDAMVNTVKNMGPYIVIAPGIAMPHAAPEDGVLKTGISMLTLKDPISFGNSEHDPVSVIISICSIDKVNHMKALKELMSIMDQEDFISKVKNIKASSEIDSILYS
>CP014219.1|AUN25846.1|2320365_2320719_-|zinc-ribbon-domain-containing-protein
MIIWGWGKVTKKIIGAVFERTCNYCNTDEVWNLCVVRTWFTLFFIPIIPYKKQYCIACPKCWSYIELTQEEFEKIKIDITSSSNNINEKVVTDNIKYAGKTETQINYLKQMEEYSNK
>CP014219.1|AUN25856.1|2331335_2332025_-|hypothetical-protein
MHYYQLKIRVKLENNINYIQAPYLIGTFINNCMLKNDMLKNIHKKKIYKYVYDSFFPIEKDGIYKREKYYNIQLRTINLNLINKLAIALYNHKFNGIKTVNIDLEVMEPTKINQLYTLKPSIVTITGQPWIKNKHSIDVLIGNLNANLEKKYKQIFNEELENNKSFIKKIKVVNNIPIKYEYKNIILLGNKFEIIVNEDEVSQRKATIALGMGLGEKGSSLGAGFCIYR
>CP014219.1|AUN25857.1|2332041_2333523_-|hypothetical-protein
MDNVLIINLGNSDIEKEGNKIEFGEFREKTKKIYEQLEGANKEEKQEIFKYLDFPIIKAIIDKVDGELKNEKLDKVILAYTNQKFNNNKDTVYLYEILKQKKHLVNNLETDNQDIWEKRLKETNFKQSYNIDFDPSDIDRMYNFYAEEINELNNKKIKKLFFSITGGASAMNFALLINAIEKFSGQLIPCYLSRGKKVAYKVNIAKNLRKQILKRDIKILINNKDYFAAIKMLENLEDGIVDDMSKLELKNIILALKYAEARIQFNFDKCKEYGEKCLDNTAEYREEFSQAVKDILIEKDDYINRLVELKNNAIYLYKKGSYTDFLGRVYRFQEAVYEHILGQYDLIIEKSNGVKINKEILKSRYSDKKEILDNIKIAGNKLEYEKNLTVDAMSKIISTLIDNDDVRNIVNRMEEIKDVKQLRNKSILAHGFEGISKEKIQGKLNCEEKDISKLLEEVMCKILVLFKIGTIEDMFYCENSRYDCILIEMIEKL
>CP014219.1|AUN25858.1|2333525_2334617_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MNYDKIILNLKGQVLTPVHIGCGKKYSPYLDIIKNENKITVLDEEKIIEKLVLNDEIFEEYINILKNKSPNAIEKYNIINILKNNKIEIGEVKKYDLICGNSFNNLIDVNQSIKTKGIPYIPGSSIKGSIRTALIYNKLLKNGIDFGKIKEISNLKNKYYCYLGQDIFRQNDKLIYDDMMKNLLVRDTDIISNNKVKVYLCRAVNLYESIKNGNISTSVKSLNECIEEYTDFTFSIIIKNSLISKEELYNNINSFYEKILLKEIQEIEKLKLNIINSQYKLLLNEINEFRKYNNGFILRIGGMKGIFSNTIDSILSKKELEDIRNAHKNKRKKTGEFPTTKWCVMDEYENIKTTLGWIKIMEE
>CP014219.1|AUN25859.1|2334606_2335662_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKKVILKIDNETKFHIGNGQEILEYIPSDKLYSAIINSLALTYSKYELNKLIEIINEKLQISSAFMGIKIKNKNKGIEKSIDFLPRPYMYIGNNNIISTQLLNRKKFKKINYVSNNVFLDFNKHYDSKKNFINYDFQQGYIIGEKYYVTDREINFLSEDEKKYLEKYKPIINESVQRNYINRFSKESIGTYYDNFKVIVQEKYKDMQLIPYFYFYIKGDLEIDKIMYAIIEGGIGGKRSLGAGTIKDISIEECDDFKENGERFINISMIYPDKQELNYIESYALENRNGYIYSQGPTDLKKPWIRMIKEGGVFTKRIKGNINDINVKDIDYPIYTYGKAFFITLGGNLDEL
>CP014219.1|AUN25860.1|2335663_2336413_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MNLLMGKIFIDGDIILKTGLRIGGGNNSIEIGGIDNNVIKNHRGEPYIPGSSLKGKLRSLLEISTNRLKDGRPCNCGECSICSIFGVGANENKQNLPTRIIVRDAFLNEDIKKQMYEKQGQFKRLELNYTESKYENTIDRLNSKATPRLIERVPEGASFRLQIIYSVFNNKDIDNFNDLIKGMKLLEDDYLGSNGSRGYGQVEFDNLNIKIKVIKDYKTKEVLNKSSLTDIDSVCLKEKLNELIEIKGV
>CP014219.1|AUN25861.1|2336425_2336824_-|type-III-A-CRISPR-associated-protein-Csm2
MEKDYKTDKFREYEEYFKKNVLTLDKINYDQFIEKSKDYSRLLKNNGLTTSMIRKIYNEILKANEAIDLKRLRPILAYTYGRNRVKGLQSLFYTLDDLLKRLNLKTNYLEIENVKEFLEVIIAYMKFYGDRY
>CP014219.1|AUN25862.1|2336842_2338993_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MHICYKSLLYSFLRYVESIDKAMYKENAFKLKDKLLNPILQESYELVTKNIKKKKCKDGTFRLMNIFSNINDSKRKKFNLLKEIDINRYDNILKENGEEIDKAYCINYVKSIIKKLLQNDNEKIYFLMSKYCSNVPFINSKNCDISLFDIAKVTAAIATCKEKNKEEYILIKGDFSGIQSFIFKTSSDGALKTLKGRSVYLTLLQEICAKYIVKELGLSLCNILYSGGGNFYILASKSDENKIKLLRKQLSKLILKAYNGEIYLALGYLSFKEEDFKNFNILWKNIGEEVGFLKSKRWSELNLKESFNEIFGPLDLGGRREHSCRLCGCINKNLKEGMCDLCISFKDFSMEMKKANFYCEKIIPKADISLHNNVKDIFHELGFEIKFSDKPLKGFKNYIINSCDFEAYDGFIFKSVKLSDESLDYMVQKQKGNNKVGVIKLDIDNLGKLFINGLGNEGSISKIISLSRNISMFFEGYIENILYKSKRLDKLKEYLKTSDWEKRVTIIFSGGDDTFIIGRYEEILEFALLIREVFEEFVGGEQLTFSAGIGIFDYNYPVINIAEDTERCLELAKNHIEGNEIYAKKNKVCIMGQVFTWNEFLEIIKLKNLIEEIYLLSSKKSIFEKINKSTLGFKAVVEGGKRLNYIKLHRLAYYLRDLNNASNKNLKNKVEELIEFYEELCLKAFMGNNKKNYNINNIMIIPVASKLAQYNYRIIN
>CP014219.1|AUN25863.1|2339324_2339819_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPMKHIMSYPTEIRKRVESLPQYKDAIQKKEKKHLTVKIIAVFMFAIIFAVVAYFSGAKSFSKAYIHVFTLFFVVNIYDMIVLDIGLFCHSKKTRIPGTEDMDKEYRNPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>CP014219.1|AUN25864.1|2339861_2340476_-|galactoside-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADVHIESPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGIGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAIGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>CP014219.1|AUN25865.1|2340799_2341153_+|peptidase-M24
MHLFINKNKLSDEIKSSLKKNAALFIHPYNKIYKEVKKFTNSDVVLVHPDRINYELYNNIDKEVITEISSSNKLDAFPAEQGRFICPSFEPISSFGEHVTIVTCIFLMENSFMVVTV

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Crispr_ID: CP014219_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP014219_4

2330803-2330957

TypeIII

III-B

Consensus_repeat	Method
TTAAATACATCTTATGTTACTGTTC	CRISPRCasFinder

2 spacers

csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

The CRISPR arrays of CP014219_4

>merge|CP014219|4|2330803-2330957|CRISPRCasFinder
TTAAATACATCTTATGTTACTGTTCAACTAATACAAAAATTAGATCCAGGAATGAAATTATTAATTTAAATACATCTTATGTTACTGTTCGACATACTGAAAAGGGTAAGAAAATTGATTATATGCTATTTAAATACATCTTATGTTACTGTTCG

>CP014219|4|4|2330803-2330957|CRISPRCasFinder
TTAAATACATCTTATGTTACTGTTC	AACTAATACAAAAATTAGATCCAGGAATGAAATTATTAAT
TTAAATACATCTTATGTTACTGTTC	GACATACTGAAAAGGGTAAGAAAATTGATTATATGCTAT
TTAAATACATCTTATGTTACTGTTCG

Protein	Signature genes	Signature genes Name	Protein_function
CP014219.1\|AUN25858.1\|2333525_2334617_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863
CP014219.1\|AUN25864.1\|2339861_2340476_-\|galactoside-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
CP014219.1\|AUN25863.1\|2339324_2339819_-\|hypothetical-protein	unknown	unknown	unknown
CP014219.1\|AUN25848.1\|2323349_2324714_-\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|236502
CP014219.1\|AUN25849.1\|2324726_2325011_-\|PTS-maltose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|99905
CP014219.1\|AUN25855.1\|2329698_2330187_+\|50S-ribosomal-protein-L7ae	unknown	unknown	gnl\|CDD\|227595
CP014219.1\|AUN25852.1\|2326452_2326854_-\|hypothetical-protein	unknown	unknown	unknown
CP014219.1\|AUN25856.1\|2331335_2332025_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
CP014219.1\|AUN25853.1\|2327191_2327938_-\|transpeptidase-transglycosylase	unknown	unknown	gnl\|CDD\|236545
CP014219.1\|AUN25851.1\|2325500_2326217_-\|transaldolase	unknown	unknown	gnl\|CDD\|183481
CP014219.1\|AUN25850.1\|2325039_2325477_-\|PTS-maltose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|238129
CP014219.1\|AUN25861.1\|2336425_2336824_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
CP014219.1\|AUN25859.1\|2334606_2335662_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|380071
CP014219.1\|AUN25854.1\|2328277_2328871_-\|acyl-phosphate-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|172889
CP014219.1\|AUN25847.1\|2321044_2323138_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|226234
CP014219.1\|AUN25862.1\|2336842_2338993_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
CP014219.1\|AUN25860.1\|2335663_2336413_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
CP014219.1\|AUN25865.1\|2340799_2341153_+\|peptidase-M24	unknown	unknown	gnl\|CDD\|379790
CP014219.1\|AUN25846.1\|2320365_2320719_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379915
CP014219.1\|AUN25857.1\|2332041_2333523_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|187878

Protein	Function_ID	Function_description	E-value
CP014219.1\|AUN25858.1\|2333525_2334617_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	3.88011e-18
CP014219.1\|AUN25864.1\|2339861_2340476_-\|galactoside-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	2.33547e-98
CP014219.1\|AUN25848.1\|2323349_2324714_-\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
CP014219.1\|AUN25849.1\|2324726_2325011_-\|PTS-maltose-transporter-subunit-IIBC	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	2.52704e-28
CP014219.1\|AUN25855.1\|2329698_2330187_+\|50S-ribosomal-protein-L7ae	gnl\|CDD\|227595	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis].	0.00379916
CP014219.1\|AUN25856.1\|2331335_2332025_-\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	0.00384193
CP014219.1\|AUN25853.1\|2327191_2327938_-\|transpeptidase-transglycosylase	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	1.38627e-11
CP014219.1\|AUN25851.1\|2325500_2326217_-\|transaldolase	gnl\|CDD\|183481	PRK12376, PRK12376, putative translaldolase; Provisional.	3.52947e-157
CP014219.1\|AUN25850.1\|2325039_2325477_-\|PTS-maltose-transporter-subunit-IIBC	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	9.05568e-38
CP014219.1\|AUN25861.1\|2336425_2336824_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	5.57512e-09
CP014219.1\|AUN25859.1\|2334606_2335662_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|380071	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain. Clustered, regularly interspaced, short palindromic repeat (CRISPR) loci play a pivotal role in the prokaryotic host defense system against invading genetic materials. The CRISPR loci are transcribed to produce CRISPR RNAs (crRNAs), which form interference complexes with CRISPR-associated (Cas) proteins to target the invading nucleic acid for degradation. The interference complex of the type III-A CRISPR-Cas system is composed of five Cas proteins (Csm1-Csm5) and a crRNA, and targets invading DNA. This entry represents the C-terminal domain found in Csm4. Csm4 structurally resembles Cmr3, a component of the type III-B CRISPR-Cas interference complex. Studies indicate that Csm3-Csm4 complex binds single-stranded RNA in a non-sequence-specific manner. Structural analysis show, Csm3 and Csm4 have one and two ferredoxin-like folds (also known as an RRM-like fold), respectively. The long beta-hairpin inserted into the C-terminal ferredoxin-like fold of Csm4, is well-conserved in the Cmr3 structure. The corresponding beta-hairpin of Cmr3 binds the D1 domain of Cmr2, as observed in the Cmr2-Cmr3 complex structure. Furthermore, it is suggested that the hairpin of Csm4 is responsible for the interaction with Csm1 (ortholog of Cmr2).	3.43304e-17
CP014219.1\|AUN25854.1\|2328277_2328871_-\|acyl-phosphate-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|172889	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase.	4.80542e-92
CP014219.1\|AUN25847.1\|2321044_2323138_-\|sugar-transporter	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.72803e-58
CP014219.1\|AUN25862.1\|2336842_2338993_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	4.54862e-98
CP014219.1\|AUN25860.1\|2335663_2336413_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.68348e-77
CP014219.1\|AUN25865.1\|2340799_2341153_+\|peptidase-M24	gnl\|CDD\|379790	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain.	2.05273e-11
CP014219.1\|AUN25846.1\|2320365_2320719_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379915	pfam17032, zinc_ribbon_15, zinc-ribbon family. This zinc-ribbon region is found on a set of largely microsporidia-specific proteins.	0.000183435
CP014219.1\|AUN25857.1\|2332041_2333523_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	3.51889e-09

>CP014219.1|AUN25855.1|2329698_2330187_+|50S-ribosomal-protein-L7ae
MISKKIIAFIAMTIMMISLLIGCSNNTMDKVYNDNIKIASVYDTFGLDKSDEIIESGIYKGKLKLSGSGTIWTYESSSDFDLKVPYILSVKSGKAKIVLISPDNTVVNLVENTDKATMKGTTSLTLPIKKGNNRIKLVGYKKADIDIELHIEKGTFEKISFN
>CP014219.1|AUN25854.1|2328277_2328871_-|acyl-phosphate-glycerol-3-phosphate-acyltransferase
MIIIITSIISFLLGSIPTGYFITKKTCGIDIRTKGSGNIGSTNVKRIVGTKISIITQTIDVLKGIIPVVLGISLSKIVKLPVSIDTYLSIIAIAAILGHDYTPFLKFKGGKGVNTTLGVFIFIAPIPTLTGLAVYFILGLFIRIVSIRSISIGITIPIMCIITKLPIQIIISTTIACILMIIRHKDNLVRLIRGEEK
>CP014219.1|AUN25853.1|2327191_2327938_-|transpeptidase-transglycosylase
MDKFRNMKKSHIALLVIMYMVLMGSLPRFTGWATIFSAIAVGGYFLKNKKDLKELTRKKKNFIFAGIIILAIIGSFNVAVGNNIQNEKLLAEKSKQEQQIKKEQEEKKLAEEQKRIQEEEARKKAEEEKRKQEEEAKKKTEEEAKKKALEEQKKQEELKRKQEEENKVKAENEQAQAAFAQSTGKGDSNSQSNESQNADDNQNYTVYKTRTGSKYHSSGCRYLKKSCYETTVSQARNEGLTPCRVCNP
>CP014219.1|AUN25852.1|2326452_2326854_-|hypothetical-protein
MNILISTCNIGIPVLMIFIGILYKCNLYKKIDKTLDLIVPIAMFFTGFSERDREHLYKNTNKLALVNRKCSLIWSISGVCTLLLTIISLILNKSDIYNTSVILLEPEFLILVIVFITVEYVLKRNFYKKIQQS
>CP014219.1|AUN25851.1|2325500_2326217_-|transaldolase
MKYNDLKIKIFADGADLNGMLDAYNKGIVKGFTTNPSLMKKAGITDYKEFAKEVLAKIKDMPVSFEVFSDDLETMEKEAEVLGNLGENVYIKIPVTNTKGESTAPLIKKLSEKGYHLNVTAIFTIDQVKEVVGALKSGVDSIVSVFAGRIADTGEDPVKIMKEASKICKTKEGVELLWASCREFYSIVEADKCGCEIITVTNDVLKKMPNMGKDLKEYSIETVRGFYKDASSLGFSIL
>CP014219.1|AUN25850.1|2325039_2325477_-|PTS-maltose-transporter-subunit-IIBC
MLKNYINDQVVEVNVEVKNWEEAVRLGGKLLEEDGAVEHSYIDAMVDTVKNMGPYIVIAPGIAMPHARPEAGAKNIRIGLLKLKNPVNFGNEEHDPVDMVIFLCAVDNKAHIEVLGELVQLIEDDDFLKIVRNASTKKEILDYIK
>CP014219.1|AUN25849.1|2324726_2325011_-|PTS-maltose-transporter-subunit-IIBC
MNILTVCGNGIGSSLMLAMKIEEICKENGIAANVESTDFNSAQGKKADLIVTVKELAEQFEGRDVAVVRSYINKKKITEDVLEIIKQKDEELKK
>CP014219.1|AUN25848.1|2323349_2324714_-|PTS-ascorbate-transporter-subunit-IIC
MLGLLQFLRDVLKQPALLMGIMALVGLVALKKPGHKVLTGTLKPILGYLMLGAGADFIVANLEPLGGMIQTGFNITGVVPNNEAIVAVAQKVLGVETMSILVVGLLINLVIARFTKYKYVFLTGHHSFFMACLLSAVLGTSGMKGTELILFGGFLLGAWSAISPAIGQKYTLKVTDGDEIAMGHFGSLAYYVSAWVGSKVGKPEESTENIEIPEKWGFLRDTTISTAITMMVFYIVAAVAAGPEYVSKLSDGMSPILFAIMSSLKFAVGVTIVYNGVRMILGDLIPAFQGIATKIIPDAIPAVDCAVFFPYAPTAVIIGFVSSFIGGIIGMVLLGVAGGVLIIPGLVPHFFCGSTAGIFGNATGGKKGAVIGSFVNGLLITFAPALLLPVLSTLGFKNTTFGDFDFGVLGIIIGKTSNLAGKTGIIIIAMLMLVALIVPNFIKTKSKALNNIEE
>CP014219.1|AUN25847.1|2321044_2323138_-|sugar-transporter
MLNKRCSNILQMIVNNEKPITIKEISKKVNKSPRTVRYDLDKIDDYLTEIEFPKLERKSNLGISLDLKDEEIKKLFKIIGKINNYDYVLSQKERVFYIIYELLNKSEFATINMLSDRMMVSRSTIINDLIEVKKWLSENKITLESSKGQGIKILGRERDLRRAAVKLFFQSMDSINFFNVTTLKLFNDIDIDFIRNTIKIAEEQMETSFSDDAFNNLVIHIAIAIKRIELSKDIIMDSEELKNLRKTAEYVIASGIAKMLEDRFKISIPEDEIGYITIHILGSNTSTLENIVKDDWIYLHLIVFKLIENVENITGINFSKDNKLFDSLAQHIRPAIYRLKHDIKVKNPLIEEIKEKYSYIFESIEEGVKFIEEDIGDSVNQEEIGYLTLHFMASIERSKNKKHRKPNVLIVCATGIGTSKFISNKLKSIFDINIIDTISSHTMEKILKYNKNIDLIVTTIPLKVKGIKCIEVNTFLTEKNISELGLYFAKFIRNNSEECNGSCKYEERDKVQEILNIVKENCTIHDYYKLRNKLALYLNIKDPTLTEDHKPSLKELLKPDFIKLNEEAENWEDAVRKSGEILMNNGCVKESYIDAMVNTVKNMGPYIVIAPGIAMPHAAPEDGVLKTGISMLTLKDPISFGNSEHDPVSVIISICSIDKVNHMKALKELMSIMDQEDFISKVKNIKASSEIDSILYS
>CP014219.1|AUN25846.1|2320365_2320719_-|zinc-ribbon-domain-containing-protein
MIIWGWGKVTKKIIGAVFERTCNYCNTDEVWNLCVVRTWFTLFFIPIIPYKKQYCIACPKCWSYIELTQEEFEKIKIDITSSSNNINEKVVTDNIKYAGKTETQINYLKQMEEYSNK
>CP014219.1|AUN25856.1|2331335_2332025_-|hypothetical-protein
MHYYQLKIRVKLENNINYIQAPYLIGTFINNCMLKNDMLKNIHKKKIYKYVYDSFFPIEKDGIYKREKYYNIQLRTINLNLINKLAIALYNHKFNGIKTVNIDLEVMEPTKINQLYTLKPSIVTITGQPWIKNKHSIDVLIGNLNANLEKKYKQIFNEELENNKSFIKKIKVVNNIPIKYEYKNIILLGNKFEIIVNEDEVSQRKATIALGMGLGEKGSSLGAGFCIYR
>CP014219.1|AUN25857.1|2332041_2333523_-|hypothetical-protein
MDNVLIINLGNSDIEKEGNKIEFGEFREKTKKIYEQLEGANKEEKQEIFKYLDFPIIKAIIDKVDGELKNEKLDKVILAYTNQKFNNNKDTVYLYEILKQKKHLVNNLETDNQDIWEKRLKETNFKQSYNIDFDPSDIDRMYNFYAEEINELNNKKIKKLFFSITGGASAMNFALLINAIEKFSGQLIPCYLSRGKKVAYKVNIAKNLRKQILKRDIKILINNKDYFAAIKMLENLEDGIVDDMSKLELKNIILALKYAEARIQFNFDKCKEYGEKCLDNTAEYREEFSQAVKDILIEKDDYINRLVELKNNAIYLYKKGSYTDFLGRVYRFQEAVYEHILGQYDLIIEKSNGVKINKEILKSRYSDKKEILDNIKIAGNKLEYEKNLTVDAMSKIISTLIDNDDVRNIVNRMEEIKDVKQLRNKSILAHGFEGISKEKIQGKLNCEEKDISKLLEEVMCKILVLFKIGTIEDMFYCENSRYDCILIEMIEKL
>CP014219.1|AUN25858.1|2333525_2334617_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MNYDKIILNLKGQVLTPVHIGCGKKYSPYLDIIKNENKITVLDEEKIIEKLVLNDEIFEEYINILKNKSPNAIEKYNIINILKNNKIEIGEVKKYDLICGNSFNNLIDVNQSIKTKGIPYIPGSSIKGSIRTALIYNKLLKNGIDFGKIKEISNLKNKYYCYLGQDIFRQNDKLIYDDMMKNLLVRDTDIISNNKVKVYLCRAVNLYESIKNGNISTSVKSLNECIEEYTDFTFSIIIKNSLISKEELYNNINSFYEKILLKEIQEIEKLKLNIINSQYKLLLNEINEFRKYNNGFILRIGGMKGIFSNTIDSILSKKELEDIRNAHKNKRKKTGEFPTTKWCVMDEYENIKTTLGWIKIMEE
>CP014219.1|AUN25859.1|2334606_2335662_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKKVILKIDNETKFHIGNGQEILEYIPSDKLYSAIINSLALTYSKYELNKLIEIINEKLQISSAFMGIKIKNKNKGIEKSIDFLPRPYMYIGNNNIISTQLLNRKKFKKINYVSNNVFLDFNKHYDSKKNFINYDFQQGYIIGEKYYVTDREINFLSEDEKKYLEKYKPIINESVQRNYINRFSKESIGTYYDNFKVIVQEKYKDMQLIPYFYFYIKGDLEIDKIMYAIIEGGIGGKRSLGAGTIKDISIEECDDFKENGERFINISMIYPDKQELNYIESYALENRNGYIYSQGPTDLKKPWIRMIKEGGVFTKRIKGNINDINVKDIDYPIYTYGKAFFITLGGNLDEL
>CP014219.1|AUN25860.1|2335663_2336413_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MNLLMGKIFIDGDIILKTGLRIGGGNNSIEIGGIDNNVIKNHRGEPYIPGSSLKGKLRSLLEISTNRLKDGRPCNCGECSICSIFGVGANENKQNLPTRIIVRDAFLNEDIKKQMYEKQGQFKRLELNYTESKYENTIDRLNSKATPRLIERVPEGASFRLQIIYSVFNNKDIDNFNDLIKGMKLLEDDYLGSNGSRGYGQVEFDNLNIKIKVIKDYKTKEVLNKSSLTDIDSVCLKEKLNELIEIKGV
>CP014219.1|AUN25861.1|2336425_2336824_-|type-III-A-CRISPR-associated-protein-Csm2
MEKDYKTDKFREYEEYFKKNVLTLDKINYDQFIEKSKDYSRLLKNNGLTTSMIRKIYNEILKANEAIDLKRLRPILAYTYGRNRVKGLQSLFYTLDDLLKRLNLKTNYLEIENVKEFLEVIIAYMKFYGDRY
>CP014219.1|AUN25862.1|2336842_2338993_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MHICYKSLLYSFLRYVESIDKAMYKENAFKLKDKLLNPILQESYELVTKNIKKKKCKDGTFRLMNIFSNINDSKRKKFNLLKEIDINRYDNILKENGEEIDKAYCINYVKSIIKKLLQNDNEKIYFLMSKYCSNVPFINSKNCDISLFDIAKVTAAIATCKEKNKEEYILIKGDFSGIQSFIFKTSSDGALKTLKGRSVYLTLLQEICAKYIVKELGLSLCNILYSGGGNFYILASKSDENKIKLLRKQLSKLILKAYNGEIYLALGYLSFKEEDFKNFNILWKNIGEEVGFLKSKRWSELNLKESFNEIFGPLDLGGRREHSCRLCGCINKNLKEGMCDLCISFKDFSMEMKKANFYCEKIIPKADISLHNNVKDIFHELGFEIKFSDKPLKGFKNYIINSCDFEAYDGFIFKSVKLSDESLDYMVQKQKGNNKVGVIKLDIDNLGKLFINGLGNEGSISKIISLSRNISMFFEGYIENILYKSKRLDKLKEYLKTSDWEKRVTIIFSGGDDTFIIGRYEEILEFALLIREVFEEFVGGEQLTFSAGIGIFDYNYPVINIAEDTERCLELAKNHIEGNEIYAKKNKVCIMGQVFTWNEFLEIIKLKNLIEEIYLLSSKKSIFEKINKSTLGFKAVVEGGKRLNYIKLHRLAYYLRDLNNASNKNLKNKVEELIEFYEELCLKAFMGNNKKNYNINNIMIIPVASKLAQYNYRIIN
>CP014219.1|AUN25863.1|2339324_2339819_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPMKHIMSYPTEIRKRVESLPQYKDAIQKKEKKHLTVKIIAVFMFAIIFAVVAYFSGAKSFSKAYIHVFTLFFVVNIYDMIVLDIGLFCHSKKTRIPGTEDMDKEYRNPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>CP014219.1|AUN25864.1|2339861_2340476_-|galactoside-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADVHIESPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGIGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAIGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>CP014219.1|AUN25865.1|2340799_2341153_+|peptidase-M24
MHLFINKNKLSDEIKSSLKKNAALFIHPYNKIYKEVKKFTNSDVVLVHPDRINYELYNNIDKEVITEISSSNKLDAFPAEQGRFICPSFEPISSFGEHVTIVTCIFLMENSFMVVTV

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Crispr_ID: CP014219_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP014219_6

2345650-2345744

TypeIII

III-B

Consensus_repeat	Method
TTAAATACATCTTATGTTAATGTTCAACC	CRISPRCasFinder

1 spacers

cas10,csm2gr11,csm3gr7

The CRISPR arrays of CP014219_6

>merge|CP014219|6|2345650-2345744|CRISPRCasFinder
TTAAATACATCTTATGTTAATGTTCAACCCAATTTTAAGGTGAACTTATACTTTGGACTGTATTATTTAAATACATCTCATGTTAATGTTCAACC

>CP014219|6|6|2345650-2345744|CRISPRCasFinder
TTAAATACATCTTATGTTAATGTTCAACC	CAATTTTAAGGTGAACTTATACTTTGGACTGTATTAT
TTAAATACATCTCATGTTAATGTTCAACC

Protein	Signature genes	Signature genes Name	Protein_function
CP014219.1\|AUN25870.1\|2346035_2348033_-\|2-enoate-reductase	unknown	unknown	gnl\|CDD\|239241
CP014219.1\|AUN25867.1\|2342994_2343735_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP014219.1\|AUN25866.1\|2341485_2342892_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340904
CP014219.1\|AUN25876.1\|2352002_2353496_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089
CP014219.1\|AUN25865.1\|2340799_2341153_+\|peptidase-M24	unknown	unknown	gnl\|CDD\|379790
CP014219.1\|AUN25872.1\|2348974_2349268_-\|hypothetical-protein	unknown	unknown	unknown
CP014219.1\|AUN25864.1\|2339861_2340476_-\|galactoside-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
CP014219.1\|AUN25871.1\|2348129_2348927_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
CP014219.1\|AUN25879.1\|2355524_2356571_-\|esterase	unknown	unknown	gnl\|CDD\|369561
CP014219.1\|AUN25873.1\|2349442_2349892_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP014219.1\|AUN25863.1\|2339324_2339819_-\|hypothetical-protein	unknown	unknown	unknown
CP014219.1\|AUN25877.1\|2354354_2354810_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378897
CP014219.1\|AUN25861.1\|2336425_2336824_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
CP014219.1\|AUN25874.1\|2350030_2350447_+\|alkylhydroperoxidase	unknown	unknown	gnl\|CDD\|225039
CP014219.1\|AUN25875.1\|2350758_2351679_-\|phenazine-biosynthesis-protein-PhzF	unknown	unknown	gnl\|CDD\|223461
CP014219.1\|AUN25878.1\|2354889_2355357_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP014219.1\|AUN25862.1\|2336842_2338993_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
CP014219.1\|AUN25860.1\|2335663_2336413_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
CP014219.1\|AUN25868.1\|2343741_2344632_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
CP014219.1\|AUN25869.1\|2344932_2345454_+\|DUF4825-domain-containing-protein	unknown	unknown	gnl\|CDD\|379767

Protein	Function_ID	Function_description	E-value
CP014219.1\|AUN25870.1\|2346035_2348033_-\|2-enoate-reductase	gnl\|CDD\|239241	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.	0
CP014219.1\|AUN25867.1\|2342994_2343735_-\|SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.74376e-12
CP014219.1\|AUN25866.1\|2341485_2342892_+\|MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.15717e-120
CP014219.1\|AUN25876.1\|2352002_2353496_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.97681e-118
CP014219.1\|AUN25865.1\|2340799_2341153_+\|peptidase-M24	gnl\|CDD\|379790	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain.	2.05273e-11
CP014219.1\|AUN25864.1\|2339861_2340476_-\|galactoside-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	2.33547e-98
CP014219.1\|AUN25879.1\|2355524_2356571_-\|esterase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	6.8162e-90
CP014219.1\|AUN25873.1\|2349442_2349892_-\|transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.0619e-36
CP014219.1\|AUN25871.1\|2348129_2348927_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.17835e-15
CP014219.1\|AUN25877.1\|2354354_2354810_+\|hypothetical-protein	gnl\|CDD\|378897	pfam12638, Staygreen, Staygreen protein. This family of proteins have been implicated in chlorophyll degradation. Intriguingly members of this family are also found in non-photosynthetic bacteria.	3.11653e-82
CP014219.1\|AUN25861.1\|2336425_2336824_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	5.57512e-09
CP014219.1\|AUN25874.1\|2350030_2350447_+\|alkylhydroperoxidase	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	1.38783e-13
CP014219.1\|AUN25875.1\|2350758_2351679_-\|phenazine-biosynthesis-protein-PhzF	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.61966e-89
CP014219.1\|AUN25878.1\|2354889_2355357_-\|transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	8.47285e-15
CP014219.1\|AUN25862.1\|2336842_2338993_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	4.54862e-98
CP014219.1\|AUN25860.1\|2335663_2336413_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.68348e-77
CP014219.1\|AUN25868.1\|2343741_2344632_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.49398e-30
CP014219.1\|AUN25869.1\|2344932_2345454_+\|DUF4825-domain-containing-protein	gnl\|CDD\|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	6.12195e-25

>CP014219.1|AUN25869.1|2344932_2345454_+|DUF4825-domain-containing-protein
MKNKLKVLIPLIIILSLNLVGCGMNSEKKSKENIKNSSKVETYDLIKYKGTYVGDNSSVGSIIKNLPANEYSAGFILQTSKEPYEITVNYKANENLGEENYNKFWKGNKVEKLLEKNAAVLLSLIPNAEIIKFNVENIGKESYKYDRKNLEQKYGNLKNLFKDNDSLNKFLNN
>CP014219.1|AUN25868.1|2343741_2344632_-|AraC-family-transcriptional-regulator
MNYRKDIENCIDYIEEHIKEPLTLKEITQEIGYSSYHFCRVFSFLKGMPLMEYVRKRRLSLSTIDLLEGQKIIDVAFKWGFETPSSFARAFRKEFGCSPSQYIKKMKSYYKSEGILTVGNFMIDPYIIKKEAFKVAGYGIKTNVADSKYTKDVASFWSNYNGENLESKLYKILSPLKHGEVGLCIPCSDSGDITYLLGVIVEDFSKVTSDMITVEVPKAQYAVFTTNPVNTVDNKDQREFAKIIKESWKYIFDEWFKNNDYEYDEEKLDFEFYDERCHLRPDTVMDIYVPIKKLER
>CP014219.1|AUN25867.1|2342994_2343735_-|SAM-dependent-methyltransferase
MINYYGSLCTVMYELLHPHAPEDELQFYLQYAKKEIKILEPLCGSGRFLVPFLERGFNITGFDMSEEMLKELYKKAPKAKVFQSSIEEFSPKEKYDYIFITSGSFSLFLDEDIAFNVLVKMKEALAPKGKFVFAAETTANIIPDREEYLENCHVKTKEGYDIIFKSKSFYDKHKKILSTPSLYELYDGDNLLGKEEMDFRIKLYDSGELEELILKAGFKGSHVFSDFNRRESIDRNTEIFLYKCYI
>CP014219.1|AUN25866.1|2341485_2342892_+|MFS-transporter
MSEKKQKHPIGLWLVNISIALQSYAAYAVVSILILFLTADVSKNGLGLSVSKAAAIIGLYQGINYMGSLVGGYITDKWLGIQKSLILGCFLTACGYLALFFAKPNIGSVWLGLIILIVAGAFFKAQISSLVGELYGKNELSKKDAAYSIFYMFINIGAFFGPIIAGLISDKWFAKVAADGEIAAYGYKYIFLMCTLIMIFIGIFIWIVSPKWLGEIGKYPVSKDKKTSTESVSTKSTEKAKAQPLTQLEKNRIKAMIVMFVFVIIFWSAWDQTATSFSLLANKLVNRTIGGFTMPVPWLTSINAIFCVVLSPIIANIWLKLGNSKKGDLSVPTKMGLGMILTGIAFLTLILGISTLGGVLDGSKQMNILFIIVAYFLLTVGELCLSPIGMAMFNKLAPAKYGSLAMGAWYLSFFFSSIISGKLAGFTDTLGYTQIFGLISGIVIVFGVILILLRNGLLKLMSLDELDK
>CP014219.1|AUN25865.1|2340799_2341153_+|peptidase-M24
MHLFINKNKLSDEIKSSLKKNAALFIHPYNKIYKEVKKFTNSDVVLVHPDRINYELYNNIDKEVITEISSSNKLDAFPAEQGRFICPSFEPISSFGEHVTIVTCIFLMENSFMVVTV
>CP014219.1|AUN25864.1|2339861_2340476_-|galactoside-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADVHIESPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGIGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAIGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>CP014219.1|AUN25863.1|2339324_2339819_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPMKHIMSYPTEIRKRVESLPQYKDAIQKKEKKHLTVKIIAVFMFAIIFAVVAYFSGAKSFSKAYIHVFTLFFVVNIYDMIVLDIGLFCHSKKTRIPGTEDMDKEYRNPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>CP014219.1|AUN25862.1|2336842_2338993_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MHICYKSLLYSFLRYVESIDKAMYKENAFKLKDKLLNPILQESYELVTKNIKKKKCKDGTFRLMNIFSNINDSKRKKFNLLKEIDINRYDNILKENGEEIDKAYCINYVKSIIKKLLQNDNEKIYFLMSKYCSNVPFINSKNCDISLFDIAKVTAAIATCKEKNKEEYILIKGDFSGIQSFIFKTSSDGALKTLKGRSVYLTLLQEICAKYIVKELGLSLCNILYSGGGNFYILASKSDENKIKLLRKQLSKLILKAYNGEIYLALGYLSFKEEDFKNFNILWKNIGEEVGFLKSKRWSELNLKESFNEIFGPLDLGGRREHSCRLCGCINKNLKEGMCDLCISFKDFSMEMKKANFYCEKIIPKADISLHNNVKDIFHELGFEIKFSDKPLKGFKNYIINSCDFEAYDGFIFKSVKLSDESLDYMVQKQKGNNKVGVIKLDIDNLGKLFINGLGNEGSISKIISLSRNISMFFEGYIENILYKSKRLDKLKEYLKTSDWEKRVTIIFSGGDDTFIIGRYEEILEFALLIREVFEEFVGGEQLTFSAGIGIFDYNYPVINIAEDTERCLELAKNHIEGNEIYAKKNKVCIMGQVFTWNEFLEIIKLKNLIEEIYLLSSKKSIFEKINKSTLGFKAVVEGGKRLNYIKLHRLAYYLRDLNNASNKNLKNKVEELIEFYEELCLKAFMGNNKKNYNINNIMIIPVASKLAQYNYRIIN
>CP014219.1|AUN25861.1|2336425_2336824_-|type-III-A-CRISPR-associated-protein-Csm2
MEKDYKTDKFREYEEYFKKNVLTLDKINYDQFIEKSKDYSRLLKNNGLTTSMIRKIYNEILKANEAIDLKRLRPILAYTYGRNRVKGLQSLFYTLDDLLKRLNLKTNYLEIENVKEFLEVIIAYMKFYGDRY
>CP014219.1|AUN25860.1|2335663_2336413_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MNLLMGKIFIDGDIILKTGLRIGGGNNSIEIGGIDNNVIKNHRGEPYIPGSSLKGKLRSLLEISTNRLKDGRPCNCGECSICSIFGVGANENKQNLPTRIIVRDAFLNEDIKKQMYEKQGQFKRLELNYTESKYENTIDRLNSKATPRLIERVPEGASFRLQIIYSVFNNKDIDNFNDLIKGMKLLEDDYLGSNGSRGYGQVEFDNLNIKIKVIKDYKTKEVLNKSSLTDIDSVCLKEKLNELIEIKGV
>CP014219.1|AUN25870.1|2346035_2348033_-|2-enoate-reductase
MKDKYKVLYDPIKIGKLEIKNRYVLAPMGPGGMCNADGSFNKRGIEFYVERAKGGTGLIMTGVTMVENNIEKCALPSMPCPTINPLNFITTGNEMTERVHAYGAKIFLQLSAGFGRVSIPSIVGKVAVAPSKIPHRFLPGVTCRELTTEEVKEYVKAFGESAEIAKKAGFDGVEIHAVHEGYLLDQFAISFFNHRTDEYGESLENRLRFACEVVQEIKKRCGQDFPVSLRYSIKSFIKDWCKGGLPDEEFEEKGRDIPEGIEAAKILVAAGYDALNGDVGSYDSWYWSHPPMYQKKGLYLPYNEILKKVVDVPIITAGRMEDPELSSDAILSGKTDMIALGRPLLADAEIPNKIFEDKYDKVRPCLSCQEGCMGRLQNFATVSCAVNPACGREKEYGLKKAEQIKKVLVVGGGVAGMEAARVAAVRGHKVTLIEKNGYLGGNIVPGGIPDFKDDDRALVKWYEGILKDLGVEIKLNVDASKENIKEFGADEVLLATGSSPRTLTIEGADKVYSAEDVLMERKNVGEKVIVIGGGLVGCETALWLKQQGKEVTIVEMQNDILQVGGPLCHANHDMLVDLIKFNKIDVKTSSYISKKTDEGFVLNTNGEESIINADSAVVAIGYLSEKDLYSEVRFDIPNARLIGDANKVQNIMYAIWSAYEVAKNI
>CP014219.1|AUN25871.1|2348129_2348927_-|MerR-family-transcriptional-regulator
MRYSITDLAEILGCTTSAIHYFEKEHLIEVEKGKNGHRYYNVVDVFRLLSYTKYRSMEIPMKTIIAQFGGEENNYKLIEKRETMYQLEALKRAQYYMNLADAIEEHLVSIRRIEELLNKYEFAKSPEVTIMCDDECGWLSKKRSSQKIIHEWVKAMPTVQLGVFDSRMGMSNFGYLVKTKKREELELPLGLHAKELKSTSCIHTIVMADEDFTQQPQKVFKKASEFVIKKGLEIGEIAWGKILLVEVEKGAKLHPYIELWISIKM
>CP014219.1|AUN25872.1|2348974_2349268_-|hypothetical-protein
MNFFTLNILIGAMAFIINKINNMSQDIDPFEAFNDIEENLDEIDNEKVTNFVNGLINASMSNPSIGYFFMFLVYMTPILNLLLLIKGIVNYFNREAG
>CP014219.1|AUN25873.1|2349442_2349892_-|transcriptional-regulator
MKLDEIDVLILQELQKDSRLSIRELSKRINLSPPSVTERVRRLEDDGVIEKYTIKINKKKLGLSIDCIVKVTMKNGQYEKFKIFIKEYKRSEWCYRIAGDGCFLVKLLVKSLNDIEEFINDISSYAITETIIAFSEVTINNGINKFLGE
>CP014219.1|AUN25874.1|2350030_2350447_+|alkylhydroperoxidase
MAKITFSQEGLTPFQQLLGHNKYIMEKWTSLEECFFNSNTFTHELKEEVRRTLAFNNGCQYCMSKGKPSNEITNSKILIATKIADIISKNQLIDNECFNRLKNEFSDNEVSELLALICFITASQKFGALLDLQPSCSI
>CP014219.1|AUN25875.1|2350758_2351679_-|phenazine-biosynthesis-protein-PhzF
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNFSETTFVTDIGPNHKKLRIFTPKTELPMAGHPTIGTAFVLADEGVIETREGINKLIFEEGVGEIAVSIHVEGGRIRSIEMEQPMPVFGRVFGDIRTAAELLSLDIADIDTTSPIQTVSTGVPFLYIPLKSLDGISKIKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIVEDPATGGASGPLGAYLVEHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGVIELPTL
>CP014219.1|AUN25876.1|2352002_2353496_+|GntR-family-transcriptional-regulator
MNIKIDKNSLITITQQLVHYFSDRIMSEFIKAGQKLPSIRNLAKELGISPMTIIKAYNNLEQNGLVTTIQGKGTYVNERNSTVKSNNITEKDSFQWQMSVPDYLSRSQFRYNPNLSYSNDYYNLSVASLNHKLLPTKTILKDSLSLIQNDIKLLSQYPPAQGDYEFRNIMSQYLRSKEIATSPENILVTSGSQQGISLIASTFIGPGDIVVMETPTYPGAIDLFKCRGAVILTVPVDSEGMRTDILMNLCDKHSPKLIYTIPNFHNPTGYSMSSNRKAELLDIARYNDILIVEDDPWNEISYKREKIKSIKSMDTDGHVVYIKSLSKILGPSYRLAVIISESSILSRLIAAKSNHDLGTSVLIQKTIINFIQSNKITYYIENLNKQLVKRRDKVISLLKSHAPSGMKWAIPEGGINIWVTLPKNFNVEKLLSYSITTKNISFLPGTICYPNEVEFNNLRICFTYLDEEFIEDTIIELCNLIKLLYTTKNITDYRPII
>CP014219.1|AUN25877.1|2354354_2354810_+|hypothetical-protein
MSKLNPEKLSVEFRDGVTGTEPILGRRYTLTHSDITAELFLTIGLTYAYDKIDVMRDEVLGEWIEKEKNYLFHVYLHVDGNNPIVTGVRNHIFRRELHLALEAIRYGDRKFFISHPKLDNSPVIVHFISSYPSFDRIEKWGTFSDYSLKKR
>CP014219.1|AUN25878.1|2354889_2355357_-|transcriptional-regulator
MSLGEKLLYLRKKEGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDYLISENYISGDVTGIEMIVDEIDWTGAWSKKYSILASYPGIKGINTYSEKISELYDSFKNDFGFNDTDTVLVLKDILYQKYKMEKKKKVDNSKEKI
>CP014219.1|AUN25879.1|2355524_2356571_-|esterase
MEVNGVKKVIKVVSVILVILVIAGFFIIKNLTETKDGKLNMYVAANLQLYKILNPKSLNNKSIEETRGALNKQSTRWSNKPIPFSNIKNLDIKMNNEKIPVRIYTPEKGSNFPIIIYSHGGFWIGGNVDTIDGVCRKLSQNTKAIVISVNYRLAPENPFPAGLNDVYNVLQWTYKNGKSINGDEKHIAVVGDSAGGNLSAAVSSMSRDKNGPSITCQVLIYPSTNIFKLNSKSWSHFSNSFNVSTEDMEKYISIYAPKKEDRKSPYASPLLSKDLRKLPDTLVVTAEIDPLRDEGEAYANKLKESGVKAEVTRYKGITHGFITMDKITNKADEALNQISLYIQKEFQK

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Crispr_ID: CP014219_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP014219_7

2677389-2677477

Orphan

Consensus_repeat	Method
ACGCCAAATCGTAGATTTGGGTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP014219_7

>merge|CP014219|7|2677389-2677477|CRISPRCasFinder
ACGCCAAATCGTAGATTTGGGTTCTATTTATACGAAACTCCTATTTACATAGGAGTAAGCGACTTACACCAAATCGTAGATTTGGGTTC

>CP014219|7|7|2677389-2677477|CRISPRCasFinder
ACGCCAAATCGTAGATTTGGGTTC	TATTTATACGAAACTCCTATTTACATAGGAGTAAGCGACTT
ACACCAAATCGTAGATTTGGGTTC

Protein	Signature genes	Signature genes Name	Protein_function
CP014219.1\|AUN26174.1\|2671745_2672996_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|237355
CP014219.1\|AUN26187.1\|2691835_2692111_-\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|376348
CP014219.1\|AUN26186.1\|2689353_2691831_-\|phosphoenolpyruvate-synthase	unknown	unknown	gnl\|CDD\|376527
CP014219.1\|AUN26184.1\|2684047_2687809_-\|phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|130916
CP014219.1\|AUN26180.1\|2678593_2679961_-\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
CP014219.1\|AUN26183.1\|2683207_2683684_-\|copper-amine-oxidase	unknown	unknown	gnl\|CDD\|377924
CP014219.1\|AUN26172.1\|2669893_2671087_-\|cysteine-desulfurase-IscS	unknown	unknown	gnl\|CDD\|132443
CP014219.1\|AUN26182.1\|2682416_2683070_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379570
CP014219.1\|AUN26181.1\|2680705_2682040_-\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
CP014219.1\|AUN26178.1\|2676646_2677231_+\|SirA-family-protein	unknown	unknown	gnl\|CDD\|274630
CP014219.1\|AUN26173.1\|2671079_2671526_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
CP014219.1\|AUN26188.1\|2692116_2693655_-\|acyl-CoA-synthetase	unknown	unknown	gnl\|CDD\|223395
CP014219.1\|AUN26185.1\|2688007_2689357_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240548
CP014219.1\|AUN26171.1\|2669463_2669892_-\|iron-sulfur-cluster-assembly-scaffold-protein	unknown	unknown	gnl\|CDD\|132460
CP014219.1\|AUN26169.1\|2667752_2668781_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
CP014219.1\|AUN26177.1\|2675452_2676319_-\|fatty-acid-binding-protein-DegV	unknown	unknown	gnl\|CDD\|273257
CP014219.1\|AUN26175.1\|2673342_2674110_-\|histidinol-phosphatase	unknown	unknown	gnl\|CDD\|235519
CP014219.1\|AUN26170.1\|2668793_2669282_-\|photosystem-reaction-center-subunit-H	unknown	unknown	gnl\|CDD\|226398
CP014219.1\|AUN26176.1\|2674436_2675345_-\|transporter	unknown	unknown	gnl\|CDD\|223751
CP014219.1\|AUN26179.1\|2677482_2678472_-\|ornithine-cyclodeaminase-family-protein	unknown	unknown	gnl\|CDD\|236313

Protein	Function_ID	Function_description	E-value
CP014219.1\|AUN26174.1\|2671745_2672996_-\|AAA-family-ATPase	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
CP014219.1\|AUN26187.1\|2691835_2692111_-\|acyl-carrier-protein	gnl\|CDD\|376348	pfam00550, PP-binding, Phosphopantetheine attachment site. A 4'-phosphopantetheine prosthetic group is attached through a serine. This prosthetic group acts as a a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups. This domain forms a four helix bundle. This family includes members not included in Prosite. The inclusion of these members is supported by sequence analysis and functional evidence. The related domain of the anguibactin system regulator AngR has the attachment serine replaced by an alanine.	6.90524e-07
CP014219.1\|AUN26186.1\|2689353_2691831_-\|phosphoenolpyruvate-synthase	gnl\|CDD\|376527	pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain. This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP).	1.70472e-129
CP014219.1\|AUN26184.1\|2684047_2687809_-\|phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|130916	TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis].	0
CP014219.1\|AUN26180.1\|2678593_2679961_-\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
CP014219.1\|AUN26183.1\|2683207_2683684_-\|copper-amine-oxidase	gnl\|CDD\|377924	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain. Copper amine oxidases catalyze the oxidative deamination of primary amines to the corresponding aldehydes, while reducing molecular oxygen to hydrogen peroxide. These enzymes are dimers of identical subunits, each comprising four domains. The N-terminal domain, which is absent in some amine oxidases, consists of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the 'stalk' of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other.	6.29162e-11
CP014219.1\|AUN26172.1\|2669893_2671087_-\|cysteine-desulfurase-IscS	gnl\|CDD\|132443	TIGR03402, Cysteine_desulfurase_NifS, cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.	0
CP014219.1\|AUN26182.1\|2682416_2683070_+\|hypothetical-protein	gnl\|CDD\|379570	pfam14344, DUF4397, Domain of unknown function (DUF4397). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 120 amino acids in length.	5.03241e-34
CP014219.1\|AUN26181.1\|2680705_2682040_-\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	0
CP014219.1\|AUN26178.1\|2676646_2677231_+\|SirA-family-protein	gnl\|CDD\|274630	TIGR03527, selenium_YedF, selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.	6.21601e-92
CP014219.1\|AUN26173.1\|2671079_2671526_-\|transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	2.74398e-52
CP014219.1\|AUN26188.1\|2692116_2693655_-\|acyl-CoA-synthetase	gnl\|CDD\|223395	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	7.4523e-31
CP014219.1\|AUN26185.1\|2688007_2689357_-\|MATE-family-efflux-transporter	gnl\|CDD\|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	1.67134e-110
CP014219.1\|AUN26171.1\|2669463_2669892_-\|iron-sulfur-cluster-assembly-scaffold-protein	gnl\|CDD\|132460	TIGR03419, NifU_clost, FeS cluster assembly scaffold protein NifU, Clostridium type. NifU and NifS form a pair of iron-sulfur (FeS) cluster biosynthesis proteins much simpler than the ISC and SUF systems. Members of this protein family are a distinct group of NifU-like proteins, found always to a NifS-like protein and restricted to species that lack a SUF system. Typically, NIF systems service a smaller number of FeS-containing proteins than do ISC or SUF. Members of this particular branch typically are found, almost half the time, near the mnmA gene, involved in the carboxymethylaminomethyl modification of U34 in some tRNAs (see GenProp0704). While other NifU proteins are associated with nitrogen fixation, this family is not. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	9.81294e-86
CP014219.1\|AUN26169.1\|2667752_2668781_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	9.50094e-46
CP014219.1\|AUN26177.1\|2675452_2676319_-\|fatty-acid-binding-protein-DegV	gnl\|CDD\|273257	TIGR00762, DegV, EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity. [Unknown function, General].	1.51459e-115
CP014219.1\|AUN26175.1\|2673342_2674110_-\|histidinol-phosphatase	gnl\|CDD\|235519	PRK05588, PRK05588, histidinol phosphate phosphatase.	3.86719e-139
CP014219.1\|AUN26170.1\|2668793_2669282_-\|photosystem-reaction-center-subunit-H	gnl\|CDD\|226398	COG3881, COG3881, PRC-barrel domain containing protein [General function prediction only].	9.12137e-16
CP014219.1\|AUN26176.1\|2674436_2675345_-\|transporter	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	5.71535e-44
CP014219.1\|AUN26179.1\|2677482_2678472_-\|ornithine-cyclodeaminase-family-protein	gnl\|CDD\|236313	PRK08618, PRK08618, ornithine cyclodeaminase family protein.	0

>CP014219.1|AUN26178.1|2676646_2677231_+|SirA-family-protein
MTKIIDCKGLKCPQPVINTKKYFDSIEKGQATTIVDNEVAKNNIIKLAEKNGFKSEVEENDSLYYITMTKEHCVACETILSNEKKLVMVISKNVLGGGDDKLGTALMKSYLYALSESDSLPSHLLFLNGGVKLTIEDSECLESIQSLKNKGVTILSCGTCLDFYGIKSKLKVGEITNMYTIVEEMTSADNTIFI
>CP014219.1|AUN26177.1|2675452_2676319_-|fatty-acid-binding-protein-DegV
MVPIIFTDASCDLPRNFIDENNIPFLGLMCNFKGKDWEDDFGKTLSYEDFYTGIKNGEMPSTSQINEYRFEEKFKELLKEERPIIYIAMSSGLSGTVNSAKMAREEILAQNQEADITIIDTKCSSIGQGLLVYNAVKMAKEGKSKDEIVKWINENKNKVNHWFMVENLTHLRRGGRVSATSATIGTLLNIKPIIHIEKDGTLKNITSIRGKKKAIRYLLDRFKENCTNHEDVLIGIVHGHCAEEAEKLKEMAREEFGVKNFIINELGIGMGAHCGDGMLALCFIANNI
>CP014219.1|AUN26176.1|2674436_2675345_-|transporter
MKSNIINQVLILSIIMGIGVICGKRKILNEEATKRLSDFLVKVTLPCLIISSFNYNFTEDMIKNAKMFFIYSIIIHIALILISGLFFLKYNERARKVLKFSTIFSNSAFMGYPVIEALYGKIGVFYASIFGIPFNIFMLSAGIMIYTGERDAKNLKGILKHPGIIATVLGMFILVFSISIPIPINTALQYVGSMTTPLSMIIVGSMLADINIKEIFSGTEAYYGSFVRLIIIPALVYILMIVVKADKLLLEICVILEAMPTAVLATVLAEEYDGDVVLAAKCVFITTILSVITIPLVVAFIS
>CP014219.1|AUN26175.1|2673342_2674110_-|histidinol-phosphatase
MFDTHLHTEFSTDSKMTIGEAIKASKDNNLGIIVTEHMDLGLKDENKFCFHVPSYFEKYNEYRNNKLLLGIELGMEKDLIEEGKEVINSGEFDYVIGSIHLIDKVDLYLDEFYKDKSKEEAFHIYFRNMRHNLEKYDFVDSLGHIDYISRYANYEDPDIKYDIFKEDIDEVLRVIVEKEKSMEINTRRLNHKRAAENLVKIYKRFYELGGRTVTLGSDSHNAKDIGNRLSFGKEIADYCNLKVVYYKNRKPEYDK
>CP014219.1|AUN26174.1|2671745_2672996_-|AAA-family-ATPase
MRPLADLMRPKKLEDFVGQKHILSENKPLYNLMKNKSICNSIFYGPPGTGKTTLANIMANYVDKKFYRLNATTASIKDIQEITSSINSLLNYSGVVLYIDELQHFTKKQQQALLEFIEDGRVILIASTTENPYFVIHKAILSRCNIFQFKPLNREDIILGLEKAINKLIDKGINIKYTFESLEYISEICQGDYRKAYNILELAVNSHCGFNIEINLDYIESLAQSNIRADATGDEYYNILSAFQKSIRGSDADAAVHYLARLIKSGDMISITRRLSVMAAEDIGLAYPNALTIVNSGIELALKVGFPEAQIILSEITIYLATLPKSNSAYIAIKNATKDLENINFGDVPDHLKDSHYYGAKNLGIGGYKYPHDFNNHYVSQEYLPKELKDKVYYIAQHNKYEENLKKYWENIKKFK
>CP014219.1|AUN26173.1|2671079_2671526_-|transcriptional-regulator
MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRGAQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGEDSCSNMDCCATRLLWAKIKESLDNIMESTTLQDMVEDYKKINSPIKRSENNE
>CP014219.1|AUN26172.1|2669893_2671087_-|cysteine-desulfurase-IscS
MNKQVYMDYSATTYTKPEVLEEMLPFFTENFGNPSSLYSFSDKTKKAVNLARERVSKALNAEKNEIFFTSGGSEADNWAIKGIAYANKKKGNHIITTKIEHHAILHTAQFLEKEGFKVTYLPVDEEGFVSVEDIKNAITDETILVSVMFANNEIGTIEPIKEIGELCKEKNIYFHTDAVQAIGHVDIDVKDMNIDLLSMSAHKFYGPKGVGALYIKNGVKIQNLIHGGGQERGKRASTENTAGIVGLGKAIELAMENMPEENEKLSNLRGRLIRGIEARIPEVKLNGPKDMSRRLPNNVNFSFIGIEGETLLLDLDMNGIFGSTGSACASASLDPSHVLLSIGLPHETAHGSLRLSLGAKNTEEDIDYVLEVLPKIIKQRREMSPLWEDYMKNKEEK
>CP014219.1|AUN26171.1|2669463_2669892_-|iron-sulfur-cluster-assembly-scaffold-protein
MYTEKVMDHFRNPRNVGEIEDANGIGEVGNAKCGDIMKIYLKVEDNIIKDVKFKTFGCASAIASSSMATELIKGKTLEDAWQLTNKAVAEALEGLPPVKMHCSVLAEEAIHKAINEYRVSQGLEAWKMKTHSEHIHEHVHGH
>CP014219.1|AUN26170.1|2668793_2669282_-|photosystem-reaction-center-subunit-H
MYRSKYFKYMNVYYSNGKKVGFIKDILVDFNEERIIGFCVSSYKILNKNNIVLIEDIISINKNMVVKKLERGKYLSFNDIKHLEVIDIEGVLMGVIEDIIINEGNFRIVAIIISMGFLNNFIKGKKIISPNEIILGERNLLYFNYRSRNLDFKIMVKNKMNT
>CP014219.1|AUN26169.1|2667752_2668781_-|AI-2E-family-transporter
MRKYYKNLYCKLLFFILVFLVFFIILIKNTIVRDILSLFFISFVIYYVLKPIHTFLKQKGINEKFSALLLVVTLIMIIGVFIISIIPAIIKEGYNITSSVGYIQKYIDYIYNKINLLNNNKILGGILNKVNGKIENYTVSIGENILNKFVGLGENILDYAVIPIIVYYFLAAGDKIIQKFFIIFPVKIRGMVKNVLEDIDKILARYIISQIILCLIITILTFLVLIGLGIKLPILLSLINGFFNIIPYFGPVIGSLPAILIAFTKSPKTALWALILLYFIQQIEGDILSPKITGDSVDMHPLTVILLLLIGGKIYGFAGMVLAIPIGVIMKIIYEDLNYYLF
>CP014219.1|AUN26179.1|2677482_2678472_-|ornithine-cyclodeaminase-family-protein
MLILTAEDIKKVFTMRDAIEADKEAFRLYSTNKAEVPLRTNINIPKYNGTSLFMPGYVEELDTAGIKIVSVFPENVKLGKPAVPAKMILLDGKTGEVSAIMDGTYLTQLRTGASAGAATDILAKEDAKIGALIGTGGQALCQLEALLAARNLEIVKVYSRNFEKVKAFVEEAKKNLSKYGTEIIGVNSSDEAIENADVITVVTTATSPVFDGRKVKEGAHINGVGSYMKHMQEIDEYIISRADKIYLDSKEAVLSEAGDFIIPLQKGIIKKDKITGELGQVISKAIDGRTTEKEITLFKSVGISVQDVVTAYKIYEKALENKVGKEIEI
>CP014219.1|AUN26180.1|2678593_2679961_-|sodium:alanine-symporter-family-protein
MEFLLNVFENINNVLWSYILMFFLCGAGIFFTFKLGFVQVKKFKAMFKQVFTKSDNDDGISSFQALATAVAAQVGTGILAGAATAIASGGPGAIFWMWISSFFGMGTIFAEAVLAQKYKTHAEDGEVLGGPAYYIRDGLGNKKLAKFFAFAMMVSACLTGDMVQSNSISIAINKAYNIPTLITGIVLVVLTAMIVIGGIQRIASVTEKLIPIMGALFILGSFIIIFKNYYNIIPALKMIFVGAFNPRAATGGLIGASVREAMRYGVSRGLFSNEAGMGSTPHAHAIANVKHPVQQGLVAMFGVFIDIFVILNCTAFVILTSGALDGKTTGIELTQQAFVNGFGGFGNSFVAISLFFFAFSTMIGWFFFGALNVKFIFGKKGMKPYTAIYLISLILGTVLDVPLVWQLADTFNGLMVIPNLIALIALAKLVQKELKDYNENFLLKQALADRKASNL
>CP014219.1|AUN26181.1|2680705_2682040_-|sodium:alanine-symporter-family-protein
MDLLKIVEGFNNILWSYILMFFLFGAGIFFTFNLRFVQVRKFKAMFKQVFSKNQDRDSGITSFQALATAVAAQVGTGNLAGAATAIAAGGPGAIFWMWVSAFFGMGTIFSEAILAQKYKVKKDNGEVLGGPAYYIRDGFGSKKLAGFFAFSMMVSACLTGDMVQSNSIGISINKAFGVPNIVVGIIVAILTALIVLGGIQRIASVTEKLVPIMALFFIIGSLIIIGINYDNIGPAFKMIFLGAFNPKAATGGLIGVSVREAMRYGISRGLFSNEAGMGSTPHAHAVADVKHPAQQGLVAMFGLFIDTFVVLTCTAMVILTTGALDGKTTGIELTQQAFINGFGHFGNIFVAVSLFFFAFSTIIGWYFFGLLNVKFIFGDKGTRPYVVLFLVALVVGTILDVPLVWQLADTFNGFMVIPNLIALIALAKLVKKELKDYENNFSIK
>CP014219.1|AUN26182.1|2682416_2683070_+|hypothetical-protein
MFDFPCFDENKVKFRKSDETSHIRILHATPDAPAVDIYINNNLISKGLSYKGFTEYMPLISRVYNIKVFPTDKKDVPVINKNIFIPPNSIYTIAATNFLKNIALFPILDKKLDNKNPNKAYVRFVHLSPNAPKLDFYMNGKEIFNNIDYKNITNYSSVDPKNYTLSLKIANTENTILTSPNANLKSDKYYTVYAVGLANGKPSLQVLIPLDGNSYIR
>CP014219.1|AUN26183.1|2683207_2683684_-|copper-amine-oxidase
MKIFLYTFMSLLFFSSFAFLLTAGKFIYHHKYGKAVFKINRNRYKKSKIAKKEFLMTVSPFKDENNNVYLPLKYVADSLGIKLYNDEEYSVIIKVMDKNVKANKKGIFIENSSTNLNTKIDKNIKVRNNELMLPQSYIKDIFEVNIEIDNKTGEVILK
>CP014219.1|AUN26184.1|2684047_2687809_-|phosphoribosylformylglycinamidine-synthase
MGNEIKTLFVEKKPQFRVESKKILNDFRLSLNMKNIEDIRILNRYNISGVSDEEYNLAKYTIFSEKTVDDLYEEKFPYDSEDKIFGVEYLPGQYDQRADSAAQCIQILTQREGVIVKYSKIFVIKGNIAKEELERIKEYCINKVDSREAQLEKPNSLQDIQLEVQSVEILHGFIDLSGKKLKEFLEDRNLAMTSEDLKFCQEYFRDKEKRNPTITEIKVIDTYWSDHCRHTTFMTEIEDIKIEEGLYSNAIKESYETYKNIKRHIYAKERATCLMDIATIAAKELRKKGLMEDLDVSPEINACSIVVDAEINGKTEKWIVMFKNETHNHPTEIEPFGGAATCVGGAIRDPLSGRVYVYQAMRVTGSADPRQNIEDTLEGKLPQKKITTEAAHGYSSYGNQIGLATGQVAEIYDEGYVAKRMEIGAVIGAAPMENVIRKEPKPSDIVILLGGRTGRDGIGGATGSSKKHTESSIENCGSEVQKGNAPTERKIQRFFRNKEVSTMIKRCNDFGAGGVAVAIGELTEGLYIDLNKVPKKYDGLDGTELSISESQERMAVVISKEDRERFIKLSAEENLEATVVAEVKEEKRLKMLWKDSIIVDLDREFLNTNGVVQKTKAYINTPEKESYFQEITIGSKENIKDKWIENIKDLNVCSQKGLVEMFDSTVGAGTVVMPLGGKYQKTPQEGMAAKLPVLEGDTTTATVMTYGFNPKISKWSPFHGAMYAVIESVTKAVAMGIDYKKIRLTFQEYFEKLENKEEKWGKPLAALLGALKAQREFSIAAIGGKDSMSGTFKEMNVPPTLVSFAVGVTNVNRIISSEFKEAGSIILYIKAKRNKEEIPDFNILKENYEKVYEAIETGNVLATSTIKSGGISEAISKMCFGNNIGAKLKNLEREELFSRDYGSIILEVNKNFDLNLLKEINYKIIGDTTERASIEILGEEILLDKCYEEFESTLEDVFISKVEKEYKKDLDISLYRNKNKKSPSVKVPKPKVLIPVFPGTNCEYDSKRAFEKAGGEVELVVFNNMSSHNIKESIDNLSSKIKQSNIIMLPGGFSAGDEPEGSGKFIATIFRNEKIKDSVMELLKARDGLMLGICNGFQALIKLGLVPFGEIRDINENCPTLTYNDIGRHQSKIAYTKVASNLSPWFNNVEVGDIHAIPISHGEGKFYAKDNVMKRLIDNGQIVTQYVDVNGNVTSDIRYNPNGSISSVEGICSPDGRILGKMAHSERIGYGTLKNVPGNKDQKIFDAGIKYFK
>CP014219.1|AUN26185.1|2688007_2689357_-|MATE-family-efflux-transporter
MTKNIEDKQGKFEELTKTPISKLILKMAIPSTMAMLIGIAYSLADTYFISKIDTISTASVGLAFSFMSVTQAFGLLYGHGSGNYMSRMESEKNRTESSKMAIDGLVISFLTGIIIMIFGELYLNELALFLGATNSLLSSTKEYLLILLIGTPFMISALTMNNQFRLQGNPSLGAAAITSGAVINCILDPIFIFYFNLGIKGAAYATVIGEIISFIILIVVSGMRENIKFNLKNFSINKKILSELYGGGIPNFTREIFIGISLMLLNNELKIFGEEYIASFTIVNRLVLAGTYLMVGLGHGFQPVCIFNYGAKLYERVEKALKFTLRSAIIFMVFISIIFLMYSENMVMLFRNDNEIINIGSQVLSIQSITLPLIGYITITGMFLQSTHKFKEATLITSSRQGYIYIPLILIMPKMLGVKGILYVQPLSDFITFVISVVLVAKYKKELKC
>CP014219.1|AUN26186.1|2689353_2691831_-|phosphoenolpyruvate-synthase
MDTKNIIGIKDARENQIDIVGGKGANLGLMISCGIPVPDGFIVTANAYKNFLKSNGILEIIEQKISNIDKETLSIKDKTEEIRNLILKAEFPKDLKEDILSRFNKFKRPIHLAVRSSATAEDLPEASFAGQQETYLNIMNKEDLFVSIKKCFSSLWSIRAFSYRTNNGYDHLNVGIAVVIQEMIESDISGVMFTSNPITAEKEIVIDASYNLGEAIVSGKVTPDNYVLDKNGEEIAFTLGSKEISVVYSDKGTVVVNNSSDIRERRCLHNENLRELFDMALKIEGLYKKPMDIEWAIKNKKVYILQARPITTIKKKQNKNTRKQYSQKEKKYLNNMIEHFPVACYPLDYEIAMILQNMKFELFKEVGLKIESPIYMDNMGIIHMNKIRWKVNPKILRFFKVYYEYKNNEKNVEYGEKILDSCKKELKVIEQNINENSYKFSLRDIDKYMSDIISIHERISFARFRYFLFPSVIIGEKLDKELKAINPNYTEYDLLSDLDYVTVDMNKDIDILSKTLSRNEELIKDLIKGASYAFIKEKYDYDSIEIKEFFNKYGWKSNYCCIPFSSSSWNEEPNRFIKLLKITISENKENEENKSGKYMGILKELEESKGKKRFKKTMGDITYYRLAHVRREESQYLWETGFGLLRLLLKQIEDLLNTKKEDLLYLSFQELRKVIAIGKLEHEYRELISYRKNHRKETEELWEQMALDAFYDNEKNIFRGISGSSGVVRGRVCIIKNHTEFDKLKEDNILICPYTDPEWTPLFKIAKGVVSDTGGALSHAAIVAREYNIPAVLGVGNATVNLSDGEYILLDGNNGIVKRLSEEII
>CP014219.1|AUN26187.1|2691835_2692111_-|acyl-carrier-protein
MIDNNTKIGLKKQIKKYLSELMDVNTEDIMDDVDLTEMGATSMVIIQLYVILQEEYGISLDATVDLYKSISLNEIVENIEKTKIDLEDIVG
>CP014219.1|AUN26188.1|2692116_2693655_-|acyl-CoA-synthetase
MKEKVTFGDIYTVIFQEEDSNKECIIVYNDEKRIVYNKKQYQMLINKMSRFLKLLYPNIKVGDWIGLKYHNNYLYYAVVFGAMKLGWNILLLDNKSESNNRYRYEIDVELIAILDNNILDNFNNEAIDIQCLNSKFEKDIWSSKVAFLSSGTTGKPQVIIYHAYAILNQIKNVKYEFLRNETLADIVYKTDNSYRKIVTFLPMNHILGFLLPLIFITLDLKVVFLSDQTPYGIIKGIRNENALGSFGVPMVWKLIKNILKRRYSENREGVDKLLGENFKIILSGGSKTDSSIRNSYIRAGIEFFVGYGLTETGFLSIGKSDLNDCESEGKVYDNYEIKVLTSDGSIRNEGTGEIIVKSDSIYAASIKDKKEICPKLIEGMYYRTGDIFELKNRKLYFKGRMKNIIVDESGENIYAEELEEFFKDMKSKGIVYFISEYKNRATMFIERNTHKRISKKYIIELIREKNKNLPISKKILKVLFLNINIEFTQKGDPIRILKEYRDIGEVFNIKGV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP014219_4	4.1\|2330828\|40\|CP014219\|CRISPRCasFinder	2330828-2330867	40	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	84481-84520	7	0.825
CP014219_4	4.1\|2330828\|40\|CP014219\|CRISPRCasFinder	2330828-2330867	40	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	9863-9902	7	0.825
CP014219_4	4.1\|2330828\|40\|CP014219\|CRISPRCasFinder	2330828-2330867	40	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	5033-5072	7	0.825
CP014219_4	4.1\|2330828\|40\|CP014219\|CRISPRCasFinder	2330828-2330867	40	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	28407-28446	7	0.825
CP014219_4	4.1\|2330828\|40\|CP014219\|CRISPRCasFinder	2330828-2330867	40	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	79769-79808	9	0.775
CP014219_4	4.1\|2330828\|40\|CP014219\|CRISPRCasFinder	2330828-2330867	40	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	200528-200567	9	0.775
CP014219_4	4.1\|2330828\|40\|CP014219\|CRISPRCasFinder	2330828-2330867	40	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	83390-83429	9	0.775
CP014219_4	4.1\|2330828\|40\|CP014219\|CRISPRCasFinder	2330828-2330867	40	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	205020-205059	10	0.75
CP014219_2	2.2\|1928971\|40\|CP014219\|CRISPRCasFinder	1928971-1929010	40	NC_018689	Bacillus thuringiensis MC28 plasmid pMC429, complete sequence	417214-417253	11	0.725
CP014219_4	4.1\|2330828\|40\|CP014219\|CRISPRCasFinder	2330828-2330867	40	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	88441-88480	11	0.725

1. spacer 4.1|2330828|40|CP014219|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 7, identity: 0.825

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
gcacaatacaaaaattagatccaggaatgaaataattatg	Protospacer
.  .***************************** ****

2. spacer 4.1|2330828|40|CP014219|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 7, identity: 0.825

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
tcataattcaaaaattatatccaggaatgaaattattata	Protospacer
   **** ********* ********************

3. spacer 4.1|2330828|40|CP014219|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 7, identity: 0.825

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
acgcaatacaaaaattagatccaggaatgaaattaatgtg	Protospacer
*  .******************************* *.

4. spacer 4.1|2330828|40|CP014219|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 7, identity: 0.825

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
tcataattcaaaaattatatccaggaatgaaattattata	Protospacer
   **** ********* ********************

5. spacer 4.1|2330828|40|CP014219|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 9, identity: 0.775

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
tcgcaatccaaaaattagatccaggaataaaattattgtg	Protospacer
   .*** ********************.********.

6. spacer 4.1|2330828|40|CP014219|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 9, identity: 0.775

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
tcggacttcaaaaattatatccaggaatgaaattattatg	Protospacer
    * * ********* ********************

7. spacer 4.1|2330828|40|CP014219|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 9, identity: 0.775

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
gcgtaatacaaatattagatccaggaatgaaataaatgtg	Protospacer
.  ********* ******************** * *.

8. spacer 4.1|2330828|40|CP014219|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 10, identity: 0.75

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
tcacagtccaaagattatatccaggaatgaaattattata	Protospacer
   .*.* ****.**** ********************

9. spacer 2.2|1928971|40|CP014219|CRISPRCasFinder matches to NC_018689 (Bacillus thuringiensis MC28 plasmid pMC429, complete sequence) position: , mismatch: 11, identity: 0.725

tatttaaaggatttaaactta---catcatttagatctaagag	CRISPR spacer
tatttaaaggatttaaacttagttcattacataggttatc---	Protospacer
*********************   ***.*. ***.*.

10. spacer 4.1|2330828|40|CP014219|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 11, identity: 0.725

aactaatacaaaaattagatccaggaatgaaattattaat	CRISPR spacer
acacaattcaaaaattagatccagaaatgaaatgaaagtg	Protospacer
*  .*** ****************.******** *  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

574566 : 583982

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN24287.1\|574566_576795_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	8.4e-106	34.0
AUN24288.1\|577442_577652_+	hypothetical protein	H7BUU1	unidentified_phage	1.2e-14	61.9
AUN24289.1\|578532_578880_+	hypothetical protein	A0A0A7RTL9	Clostridium_phage	1.7e-29	60.5
AUN24290.1\|578898_579048_-	hypothetical protein	NA	NA	NA	NA
AUN24291.1\|579565_580375_+	hypothetical protein	A0A2I2L551	Orpheovirus	3.0e-45	40.6
AUN27336.1\|580796_580958_-	recombinase XerC	NA	NA	NA	NA
AUN24292.1\|581333_582710_+	phosphate starvation-inducible protein PhoH	A0A141HS37	Bacillus_phage	3.0e-106	44.3
AUN24293.1\|582977_583982_+	exopolysaccharide biosynthesis protein	A0A1P8CWN9	Bacillus_phage	4.3e-09	30.7

DBSCAN-SWA_2

919904 : 931605

Clostridium_botulinum_D_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN24599.1\|919904_921785_-	hemagglutinin	Q786X9	Clostridium_botulinum_D_phage	7.8e-238	67.5
AUN24600.1\|921798_922239_-	hemagglutinin	Q786Y1	Clostridium_botulinum_D_phage	3.0e-47	63.7
AUN24601.1\|922301_923186_-	hemagglutinin	Q38196	Clostridium_botulinum_phage	2.8e-36	34.5
AUN27339.1\|923412_923949_+	transcriptional regulator BotR, P-21	Q38195	Clostridium_botulinum_phage	2.8e-39	52.2
AUN27340.1\|924110_927704_+	peptidase M27	Q332E1	Clostridium_botulinum_C_phage	0.0e+00	69.1
AUN24602.1\|927729_931605_+	peptidase M27	Q332E0	Clostridium_botulinum_C_phage	7.8e-184	33.1

DBSCAN-SWA_3

1717685 : 1724751

uncultured_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN25314.1\|1717685_1718630_-	DeoR family transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	4.2e-14	31.6
AUN25315.1\|1719253_1720249_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA
AUN25316.1\|1720365_1721127_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA
AUN25317.1\|1721144_1721576_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	1.0e-12	33.1
AUN25318.1\|1721577_1722243_+	7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	1.7e-38	44.1
AUN25319.1\|1722246_1722837_+	GTP cyclohydrolase I FolE	S4U0J3	uncultured_phage	7.0e-44	52.8
AUN25320.1\|1723020_1723680_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.0e-59	51.2
AUN25321.1\|1723794_1724751_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.7e-16	33.5

DBSCAN-SWA_4

1834729 : 1871253

Clostridium_phage(55.88%)

terminase,integrase,tail,protease,head,capsid,portal

attL 1825006:1825023|attR 1855403:1855420

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1825006:1825023	attL	NA	NA	NA	NA
AUN25407.1\|1834729_1835281_+	DUF4352 domain-containing protein	A0A0S2MVG4	Bacillus_phage	1.1e-11	32.0
AUN25408.1\|1836189_1837263_-\|integrase	site-specific integrase	A0A2R2ZGM9	Clostridioides_phage	2.2e-19	30.1
AUN25409.1\|1837323_1837770_-	ImmA/IrrE family metallo-endopeptidase	Q0H245	Geobacillus_phage	2.9e-26	42.8
AUN25410.1\|1837788_1838214_-	transcriptional regulator	D2XR39	Bacillus_phage	1.3e-31	58.0
AUN25411.1\|1838440_1838644_+	transcriptional regulator	NA	NA	NA	NA
AUN25412.1\|1838660_1838960_+	hypothetical protein	NA	NA	NA	NA
AUN27355.1\|1839050_1839800_+	hypothetical protein	A0A0A7RUT3	Clostridium_phage	2.8e-45	44.6
AUN25413.1\|1839811_1840072_+	ubiquitin	NA	NA	NA	NA
AUN25414.1\|1840074_1840347_+	hypothetical protein	NA	NA	NA	NA
AUN25415.1\|1840332_1840704_-	hypothetical protein	A0A1S5SCT1	Streptococcus_phage	1.5e-12	36.6
AUN25416.1\|1840770_1840953_+	hypothetical protein	A0A0A7RTQ2	Clostridium_phage	6.5e-09	54.2
AUN25417.1\|1841209_1841407_+	hypothetical protein	NA	NA	NA	NA
AUN25418.1\|1841461_1841620_+	hypothetical protein	NA	NA	NA	NA
AUN25419.1\|1841592_1842090_+	hypothetical protein	A0A0A7S0G6	Clostridium_phage	7.5e-39	52.1
AUN25420.1\|1842089_1842719_+	recombinase	A0A0F6N3I5	Staphylococcus_phage	5.7e-36	39.1
AUN25421.1\|1842720_1843005_+	hypothetical protein	NA	NA	NA	NA
AUN25422.1\|1843015_1843903_+	hypothetical protein	A0A0A7RTL4	Clostridium_phage	2.5e-61	65.1
AUN25423.1\|1843832_1844600_+	MerR family transcriptional regulator	M9Q1J4	Clostridium_phage	3.2e-49	44.7
AUN25424.1\|1844611_1844923_+	hypothetical protein	NA	NA	NA	NA
AUN25425.1\|1844925_1845462_+	nitrate ABC transporter ATP-binding protein	NA	NA	NA	NA
AUN25426.1\|1845439_1845718_+	nucleotide pyrophosphohydrolase	Q24LD1	Clostridium_phage	2.3e-05	49.2
AUN25427.1\|1845927_1846494_+	hypothetical protein	A0A0M3LPV8	Mannheimia_phage	1.9e-38	46.1
AUN25428.1\|1846530_1846827_+	hypothetical protein	NA	NA	NA	NA
AUN25429.1\|1846875_1847085_+	hypothetical protein	NA	NA	NA	NA
AUN25430.1\|1847146_1847569_+	phage N-6-adenine-methyltransferase	A0A0A7RUD1	Clostridium_phage	1.4e-70	89.3
AUN25431.1\|1848005_1848368_+	hypothetical protein	NA	NA	NA	NA
AUN25432.1\|1848400_1848718_+	hypothetical protein	NA	NA	NA	NA
AUN25433.1\|1848762_1848912_+	mszf55-1	NA	NA	NA	NA
AUN25434.1\|1848953_1849262_+	hypothetical protein	NA	NA	NA	NA
AUN25435.1\|1849366_1849555_+	hypothetical protein	NA	NA	NA	NA
AUN25436.1\|1849564_1849933_+	hypothetical protein	A0A0A7RVR5	Clostridium_phage	3.4e-20	41.2
AUN25437.1\|1850106_1850508_+	hypothetical protein	A0A090D860	Clostridium_phage	3.0e-30	50.0
AUN25438.1\|1850507_1850933_+	hypothetical protein	A0A2I7QT09	Vibrio_phage	6.0e-13	38.8
AUN25439.1\|1850935_1851262_+	hypothetical protein	A0A0A7RWJ7	Clostridium_phage	1.3e-18	47.6
AUN25440.1\|1851274_1851412_+	hypothetical protein	NA	NA	NA	NA
AUN25441.1\|1851413_1851572_+	hypothetical protein	NA	NA	NA	NA
AUN25442.1\|1851715_1852360_+	hypothetical protein	NA	NA	NA	NA
AUN25443.1\|1852729_1853245_+	hypothetical protein	NA	NA	NA	NA
AUN27356.1\|1853434_1853650_+	hypothetical protein	NA	NA	NA	NA
AUN25444.1\|1853650_1854196_+\|integrase	site-specific integrase	E2ELN7	Clostridium_phage	9.6e-56	60.1
AUN25445.1\|1854350_1854626_+	hypothetical protein	A0A0K2CZP5	Paenibacillus_phage	3.0e-13	42.5
AUN25446.1\|1854678_1855035_+	hypothetical protein	NA	NA	NA	NA
AUN25447.1\|1855036_1855459_+	non-transporter ABC protein	NA	NA	NA	NA
1855403:1855420	attR	NA	NA	NA	NA
AUN25448.1\|1855458_1855932_+	hypothetical protein	A0A0A7RUV1	Clostridium_phage	5.1e-13	38.2
AUN25449.1\|1856022_1856487_+\|terminase	terminase	A0A0A7S0C4	Clostridium_phage	1.6e-56	78.7
AUN25450.1\|1856483_1858181_+\|terminase	terminase	A6M948	Geobacillus_virus	2.5e-195	59.6
AUN25451.1\|1858196_1859381_+\|portal	phage portal protein	A0A2K9VBP0	Staphylococcus_phage	6.7e-70	36.9
AUN25452.1\|1859370_1860129_+\|protease	Clp protease ClpP	A0A0B5A796	Paenibacillus_phage	3.2e-73	61.1
AUN25453.1\|1860121_1861249_+\|capsid	major capsid protein	A0A1B1P7R4	Bacillus_phage	2.1e-121	62.4
AUN25454.1\|1861268_1861424_+	termination factor Rho	NA	NA	NA	NA
AUN25455.1\|1861438_1861765_+	hypothetical protein	Q8SBP7	Clostridium_phage	1.1e-14	50.0
AUN25456.1\|1861745_1862072_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AUN25457.1\|1862064_1862448_+	hypothetical protein	E2ELI9	Clostridium_phage	5.4e-29	50.7
AUN25458.1\|1862444_1862783_+	hypothetical protein	A0A0S2SY15	Bacillus_phage	1.4e-17	43.7
AUN25459.1\|1862789_1863371_+\|tail	phage tail protein	E2ELJ1	Clostridium_phage	1.1e-60	60.1
AUN25460.1\|1863400_1863688_+	hypothetical protein	E2ELJ2	Clostridium_phage	3.0e-16	49.5
AUN25461.1\|1863956_1869296_+\|tail	phage tail tape measure protein	A0A0H4TEZ5	Erysipelothrix_phage	6.1e-62	48.6
AUN25462.1\|1869312_1870182_+\|tail	phage tail protein	E2ELJ6	Clostridium_phage	2.7e-108	69.0
AUN25463.1\|1870185_1871253_+	hypothetical protein	E2ELJ7	Clostridium_phage	2.0e-121	59.1

DBSCAN-SWA_5

2720400 : 2738786

Clostridium_phage(83.33%)

terminase,tail,bacteriocin,protease,head,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN26213.1\|2720400_2720625_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
AUN26214.1\|2720900_2721479_-	hypothetical protein	NA	NA	NA	NA
AUN26215.1\|2721513_2722428_-	hypothetical protein	NA	NA	NA	NA
AUN26216.1\|2722747_2722945_-	hypothetical protein	NA	NA	NA	NA
AUN26217.1\|2723035_2723251_-	hypothetical protein	A0A2H4JGH3	uncultured_Caudovirales_phage	4.1e-10	69.6
AUN26218.1\|2723252_2723603_-	hypothetical protein	NA	NA	NA	NA
AUN26219.1\|2723628_2725113_-	hypothetical protein	E2ELJ8	Clostridium_phage	5.5e-53	57.8
AUN26220.1\|2725120_2726278_-	hypothetical protein	A0A0C5AMZ5	Paenibacillus_phage	1.5e-61	33.9
AUN27380.1\|2726283_2727093_-\|tail	phage tail protein	E2ELJ6	Clostridium_phage	8.7e-45	42.0
AUN26221.1\|2727168_2730684_-\|tail	phage tail tape measure protein	A0A0A7RVT5	Clostridium_phage	1.9e-112	73.4
AUN27381.1\|2730700_2730829_-	hemolysin	A0A0A7RUE3	Clostridium_phage	7.5e-12	73.8
AUN26222.1\|2730939_2731284_-	RNA polymerase subunit sigma	A0A0A7RUF5	Clostridium_phage	1.1e-36	71.4
AUN26223.1\|2731345_2731948_-\|tail	phage tail protein	A0A0A7RUI3	Clostridium_phage	4.2e-76	72.2
AUN26224.1\|2732010_2732367_-\|head,protease	prohead protease	A0A0A7S158	Clostridium_phage	2.8e-48	79.3
AUN26225.1\|2732377_2732740_-	hypothetical protein	A0A0A7RUF1	Clostridium_phage	2.2e-24	50.0
AUN26226.1\|2732740_2733121_-\|head,tail	head-tail adaptor protein	A0A0A7RUH8	Clostridium_phage	4.4e-39	71.6
AUN26227.1\|2733120_2733396_-	DNA packaging protein	I2E8V5	Clostridium_phage	7.6e-09	40.0
AUN26228.1\|2733441_2734533_-\|capsid	capsid protein	I2E8V4	Clostridium_phage	1.3e-75	45.9
AUN26229.1\|2734591_2735185_-	peptidase U35	Q8SBP9	Clostridium_phage	1.3e-34	47.5
AUN26230.1\|2735162_2736425_-\|portal	phage portal protein	I2E8V3	Clostridium_phage	1.9e-99	49.4
AUN26231.1\|2736432_2736618_-	hypothetical protein	I2E8V2	Clostridium_phage	1.0e-09	67.9
AUN26232.1\|2736618_2738304_-\|terminase	terminase	A0A0A7RUM0	Clostridium_phage	1.6e-178	55.3
AUN26233.1\|2738300_2738786_-\|terminase	terminase	A0A1G5SA54	Enterococcus_phage	9.3e-18	35.8

DBSCAN-SWA_6

3121993 : 3128231

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN26564.1\|3121993_3123493_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.9e-69	46.9
AUN26565.1\|3123706_3124324_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.5e-25	40.6
AUN26566.1\|3124451_3125447_-	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	9.9e-67	43.7
AUN26567.1\|3125507_3126956_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.5e-58	35.4
AUN26568.1\|3127047_3127752_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	6.0e-42	42.1
AUN26569.1\|3127751_3128231_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.1e-26	48.7

DBSCAN-SWA_7

3272042 : 3300135

Clostridium_phage(80.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN26696.1\|3272042_3273167_-	chorismate synthase	A0A291AU41	Pandoravirus	1.2e-31	30.3
AUN26697.1\|3273307_3274078_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4J8A3	uncultured_Caudovirales_phage	1.1e-84	62.9
AUN26698.1\|3274224_3274419_-	hypothetical protein	NA	NA	NA	NA
AUN26699.1\|3274437_3274692_-	hypothetical protein	A0A0A7RTX0	Clostridium_phage	4.8e-26	70.9
AUN26700.1\|3274844_3275654_-	cell adhesion protein	NA	NA	NA	NA
AUN26701.1\|3275705_3276704_-	hypothetical protein	A0A0A7RU14	Clostridium_phage	6.5e-50	41.7
AUN26702.1\|3276790_3277570_-	hypothetical protein	NA	NA	NA	NA
AUN26703.1\|3277571_3278273_-	hypothetical protein	NA	NA	NA	NA
AUN26704.1\|3278353_3279439_-	signal peptidase II	A0A0A7RU66	Clostridium_phage	6.7e-141	69.8
AUN26705.1\|3279450_3280449_-	hypothetical protein	A0A0A7RW91	Clostridium_phage	7.5e-139	71.1
AUN26706.1\|3280460_3280715_-	hypothetical protein	A0A0A7S0T0	Clostridium_phage	1.1e-33	81.0
AUN26707.1\|3280720_3282616_-	hypothetical protein	A0A0A7RU09	Clostridium_phage	2.9e-115	52.3
AUN26708.1\|3282630_3283869_-	hypothetical protein	A0A0A7RU28	Clostridium_phage	1.5e-197	81.3
AUN26709.1\|3283891_3284872_-	hypothetical protein	A0A0A7RU61	Clostridium_phage	6.1e-109	61.6
AUN26710.1\|3284873_3286223_-	hypothetical protein	A0A0A7RW86	Clostridium_phage	1.1e-73	73.5
AUN26711.1\|3286237_3286579_-	hypothetical protein	A0A0A7S0S4	Clostridium_phage	2.7e-16	55.7
AUN26712.1\|3286591_3287677_-	hypothetical protein	NA	NA	NA	NA
AUN26713.1\|3287663_3288098_-	hypothetical protein	NA	NA	NA	NA
AUN26714.1\|3288110_3289514_-	hypothetical protein	A0A0A7RU22	Clostridium_phage	1.2e-04	42.4
AUN26715.1\|3289589_3289757_-	hypothetical protein	A0A0A7RW80	Clostridium_phage	1.1e-15	68.5
AUN26716.1\|3289791_3290208_-	esterase	A0A0A7S0S0	Clostridium_phage	7.6e-45	70.5
AUN26717.1\|3290223_3291111_-	hypothetical protein	A0A0A7RTZ9	Clostridium_phage	3.1e-120	75.3
AUN26718.1\|3291115_3291535_-	hypothetical protein	A0A0A7RU17	Clostridium_phage	3.5e-58	72.7
AUN26719.1\|3291540_3291888_-	hypothetical protein	A0A0A7RU51	Clostridium_phage	1.3e-34	61.6
AUN26720.1\|3291892_3292258_-	hypothetical protein	A0A0A7RW73	Clostridium_phage	3.8e-32	56.2
AUN26721.1\|3292257_3292542_-	hypothetical protein	A0A0A7S0R4	Clostridium_phage	1.7e-24	60.2
AUN26722.1\|3293229_3293751_-	hypothetical protein	A0A0A7RVS1	Clostridium_phage	3.6e-36	50.6
AUN26723.1\|3293864_3294185_-	hypothetical protein	NA	NA	NA	NA
AUN26724.1\|3294241_3295090_-	DNA replication protein	A0A2K9V3L7	Faecalibacterium_phage	3.0e-32	36.3
AUN26725.1\|3295031_3295946_-	hypothetical protein	A8ASN4	Listeria_phage	3.3e-40	39.1
AUN26726.1\|3296030_3296264_-	transcriptional regulator	NA	NA	NA	NA
AUN26727.1\|3296304_3296514_-	transcriptional regulator	NA	NA	NA	NA
AUN26728.1\|3296705_3297116_+	transcriptional regulator	A0A0A7RUJ5	Clostridium_phage	1.0e-09	56.2
AUN26729.1\|3297417_3297567_+	hypothetical protein	NA	NA	NA	NA
AUN26730.1\|3298647_3300135_+	membrane-bound O-acyltransferase family protein	A0A125RNP0	Pseudomonas_phage	3.7e-65	38.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP014218

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP014219

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection