CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP014174	Clostridium botulinum strain B609 chromosome, complete genome	6 crisprs	DEDDh,csa3,DinG,WYL,cas3,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,casR	2	11
CP014172	Clostridium botulinum strain B609 plasmid pRSJ22_1, complete sequence	0 crisprs	NA	0	0
CP014173	Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence	0 crisprs	NA	0	4

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP014174_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP014174_1

1036269-1036361

Orphan

III-B

Consensus_repeat	Method
TTGAACAATAACATGAGATGTATTTAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP014174_1

>merge|CP014174|1|1036269-1036361|CRISPRCasFinder
TTGAACAATAACATGAGATGTATTTAAATAAAACAATTCCTCTTGAAGGTTGTTTGTTTTTCTATTGAACATTAACATGAGATGTATTTAAAT

>CP014174|1|1|1036269-1036361|CRISPRCasFinder
TTGAACAATAACATGAGATGTATTTAAAT	AAAACAATTCCTCTTGAAGGTTGTTTGTTTTTCTA
TTGAACATTAACATGAGATGTATTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP014174.1\|AUN20923.1\|1045699_1047160_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|273643
CP014174.1\|AUN20914.1\|1036472_1037237_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
CP014174.1\|AUN20920.1\|1042953_1043652_+\|cobalt-ECF-transporter-T-component-CbiQ	unknown	unknown	gnl\|CDD\|274139
CP014174.1\|AUN20906.1\|1025408_1027769_-\|sulfate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
CP014174.1\|AUN20916.1\|1039425_1040388_+\|cobalamin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|234919
CP014174.1\|AUN20922.1\|1044691_1045564_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
CP014174.1\|AUN20919.1\|1042691_1042991_+\|cobalt-ABC-transporter-substrate-binding-protein-CbiN	unknown	unknown	gnl\|CDD\|179494
CP014174.1\|AUN20921.1\|1044060_1044723_+\|precorrin-2-dehydrogenase	unknown	unknown	gnl\|CDD\|235504
CP014174.1\|AUN20911.1\|1032980_1033526_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP014174.1\|AUN20904.1\|1021580_1021790_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|226489
CP014174.1\|AUN20915.1\|1037942_1039424_+\|cobyric-acid-synthase-CobQ	unknown	unknown	gnl\|CDD\|234838
CP014174.1\|AUN20908.1\|1028596_1029628_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP014174.1\|AUN20913.1\|1035489_1036047_+\|adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanyltransferase	unknown	unknown	gnl\|CDD\|235612
CP014174.1\|AUN20909.1\|1029979_1030528_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
CP014174.1\|AUN20905.1\|1023437_1025045_+\|cell-shape-determining-protein	unknown	unknown	gnl\|CDD\|379716
CP014174.1\|AUN20907.1\|1027928_1028600_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP014174.1\|AUN20918.1\|1041968_1042688_+\|cobalamin-biosynthesis-protein-CbiM	unknown	unknown	gnl\|CDD\|181384
CP014174.1\|AUN20917.1\|1040606_1041695_+\|aspartate-aminotransferase	unknown	unknown	gnl\|CDD\|180542
CP014174.1\|AUN20912.1\|1033604_1035212_+\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234688
CP014174.1\|AUN20910.1\|1030932_1032639_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276807

Protein	Function_ID	Function_description	E-value
CP014174.1\|AUN20923.1\|1045699_1047160_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|273643	TIGR01469, Uroporphyrinogen-III_C-methyltransferase, uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	5.21983e-120
CP014174.1\|AUN20914.1\|1036472_1037237_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	1.17034e-48
CP014174.1\|AUN20920.1\|1042953_1043652_+\|cobalt-ECF-transporter-T-component-CbiQ	gnl\|CDD\|274139	TIGR02454, Uncharacterized_protein_MJ1089, cobalt ECF transporter T component CbiQ. This model represents the CbiQ component of the cobalt-specific ECF-type. CbiQ is now recognized as the T component of energy-coupling factor (ECF)-type transporters. The S component confers specificity (CbiM-N for cobalt systems), which CbiO is the ABC-family ATPase. In general, proteins found by this model reside next to the other putative subunits of the complex, identified as CbiN, CbiO, or CbiM. Note that the designation of cobalt transporter has been spread excessively among ECF system transporters with many other specificities. [Transport and binding proteins, Cations and iron carrying compounds].	2.2007e-28
CP014174.1\|AUN20906.1\|1025408_1027769_-\|sulfate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.19141e-111
CP014174.1\|AUN20916.1\|1039425_1040388_+\|cobalamin-biosynthesis-protein	gnl\|CDD\|234919	PRK01209, cobD, cobalamin biosynthesis protein.	5.61387e-153
CP014174.1\|AUN20922.1\|1044691_1045564_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	3.23303e-147
CP014174.1\|AUN20919.1\|1042691_1042991_+\|cobalt-ABC-transporter-substrate-binding-protein-CbiN	gnl\|CDD\|179494	PRK02898, PRK02898, energy-coupling factor ABC transporter substrate-binding protein.	1.72614e-41
CP014174.1\|AUN20921.1\|1044060_1044723_+\|precorrin-2-dehydrogenase	gnl\|CDD\|235504	PRK05562, PRK05562, NAD(P)-dependent oxidoreductase.	3.18003e-107
CP014174.1\|AUN20911.1\|1032980_1033526_+\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13156e-17
CP014174.1\|AUN20904.1\|1021580_1021790_-\|acetyltransferase	gnl\|CDD\|226489	COG3981, COG3981, Predicted acetyltransferase [General function prediction only].	1.35488e-06
CP014174.1\|AUN20915.1\|1037942_1039424_+\|cobyric-acid-synthase-CobQ	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
CP014174.1\|AUN20908.1\|1028596_1029628_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	7.26589e-59
CP014174.1\|AUN20913.1\|1035489_1036047_+\|adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanyltransferase	gnl\|CDD\|235612	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated.	1.31839e-84
CP014174.1\|AUN20909.1\|1029979_1030528_+\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	1.35592e-40
CP014174.1\|AUN20905.1\|1023437_1025045_+\|cell-shape-determining-protein	gnl\|CDD\|379716	pfam14897, EpsG, EpsG family. This family of proteins are related to the EpsG protein from B. subtilis. These proteins are likely glycosyl transferases belonging to the membrane protein GT-C clan.	0.00131254
CP014174.1\|AUN20907.1\|1027928_1028600_+\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.06578e-65
CP014174.1\|AUN20918.1\|1041968_1042688_+\|cobalamin-biosynthesis-protein-CbiM	gnl\|CDD\|181384	PRK08319, PRK08319, energy-coupling factor ABC transporter permease.	2.23594e-119
CP014174.1\|AUN20917.1\|1040606_1041695_+\|aspartate-aminotransferase	gnl\|CDD\|180542	PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional.	2.59591e-90
CP014174.1\|AUN20912.1\|1033604_1035212_+\|LexA-family-transcriptional-regulator	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	2.20997e-32
CP014174.1\|AUN20910.1\|1030932_1032639_+\|hypothetical-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.82323e-41

>CP014174.1|AUN20913.1|1035489_1036047_+|adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanyltransferase
MSNKNKVVLITGGVRSGKSEFAESLLQKEKSVLYIATAKITDKEMEHRVEKHKERRNSTWKTYEGYKGLGKIIKYYDEKNILLDCVTVMTTNLMFHKEIDYENIKEEELDEILEGIKKEFHDLIISVKEENKNIILVTNEVGYSIVPAYKLGRIFRDFQGIINKFIASLSDEVYLVTCGIPLKIK
>CP014174.1|AUN20912.1|1033604_1035212_+|LexA-family-transcriptional-regulator
MKLESGQNRIAKSKHLGYGLLRGSKGTGKTTAAIYRGIYLKNQYCMYDKDKVLILSKNEENLNYIKNIYNDAEKTGVQYITLFSYNEDKLHFSSIYKIINKYFWEYIENNNLQYELASEKEKLAIIEECINDIKNEYKNLKYIDIKYSKFFLEEIQWMKDCMYYDLEEYKKADRIGRKTKKGEGPQRIIKNSKIREAVFKIMLLYNEKLKYKNLVDYSDVVSMSLKEASKNKENKFNHIIVDEAQNFTKLELKFIEALGRKNIYSSILFIADKEKNLNPKGWITKGRKLNNLQLGFEFKRFNLNKKIGINVKEEVETYIDDCNLKRKASNINTKNEDVSNVDNSNSEDKGLDKNIKNEWHKDKVNYDMDKFEYVDMKHRRSYEFSRGLGSNEEIIVEDQGSKEEYKEDELTKLPVFNDIAAGEPILMNPCVEGEFNIPKYWVRGMKNCFILKVKGDSMIGANIEDGNHVVIKRQQMAENKDIVAVNLEGSATLKRLLIKKSGAVLMPENKKYKPIEILEEGASIIGIAVGIIKGK
>CP014174.1|AUN20911.1|1032980_1033526_+|N-acetyltransferase
MGKIKQAKYNINGKTIIIRHAEVQDAEQLINVTKKVNQETDFLLKDPGEVCLTIKEEKEFIQSQIDSQVDLLIVPEVDGRIVGVCSLNGNTNKRIRHSAQFGLAVEKEYCGMGIGKNLMKSGIQWAKENGIFRITLEVDINNYRAISLYLKLGFEIEGTLRNDKMLSDGSYTSGYAMALLL
>CP014174.1|AUN20910.1|1030932_1032639_+|hypothetical-protein
MDRFSFLKIEWPEIYQIICNVEEKSKEDSNITLIELAQIAELITKYILKENHIEKNTELLDEINLLKDCHNLNADIVDFFYKIIIVSNKAIYEDYSDSIIAKSFLDKMFEILVWFAIEYGKTDYRKVDLSNMIPEDKDIFNKYIKSKSYNYTEKNIENETMIQPFTIENEEFFKEENNDDINRYEQDVFETNEEFHKRIRNHEIFTLGRIFIEKSNINETDEIVAFPFSVYKSIQIKIPIIDMLYIERAEFENLSIEEEEYILFSKLDIINDKICIDINNIYIEVSNNKCKVHAVVLDISYYESYEKYRNIIYSKKPIPIGMIKFNKNKYDINKNEMPVTINYYDWIQKYILNTKAYIEIHRYEAKTLCKENLYYILNGKLDIFDKKLLIREYYIQSKSLNKNFRINLHSSDPMNKLRCLVDKEEILAMNIIGEMYCKEQNYKEAMYWYKKAAEKGNSTSMNKIGVMYYEGKGVEQDYQKAMYWYKKSSQEGNFTAMSNIGSMYYNGQGVTEDYKKAMYWYKKSYKEGNFGVMRDIGSMYYEGKGVIKDYKKAMQCYKKASQIDNFIK
>CP014174.1|AUN20909.1|1029979_1030528_+|biotin-transporter-BioY
MDKKLKVRDMIYSALFATIIGVSSYIIIPLPISPVPITAQSLAIMLAGCVLTPIQVVLSMVTFLLMGIIGIPVFSGGTAGFGIIVGKTGGYLIGFLVGAIIISLLVHKNKSLVNMLIACFIGGIIVVHILGSAWLGQVTSIGIKKAFLLGSAPFIPGDLIKAVVAVLIGRKLSKEMKRIRTQ
>CP014174.1|AUN20908.1|1028596_1029628_+|two-component-sensor-histidine-kinase
MMNNKISVKMVVAFSLIVFFIVTSAVVISGLVVVFLSRFNVFTQPNPLILLGWLGIISIMVSTAIAQIIGKKVLSPISDLNKATKEVAKGNFNTRLSENSWTDEIREMAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERREYIHKILISTKRLSSLSGNILQITELENQKILPLEQKYYLDEQIRQTILLFEYEWTKKNIILDINLDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEVLITIKDNGIGMSEEVKNRVFEKFYQGDSSHYSDGNGLGLALVKRIIDICEGTIEISSHEAVGTEFTVKLPK
>CP014174.1|AUN20907.1|1027928_1028600_+|DNA-binding-response-regulator
MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYREYIDLIISDIMMPNMDGYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQIINERRIVIGETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGIESETDPRTVDVHINRLRDRFKDNKDFNIITIRGLGYKVVKQ
>CP014174.1|AUN20906.1|1025408_1027769_-|sulfate-ABC-transporter-ATP-binding-protein
MLQIKDLKKVYTTGEFKQTALDGVSIDFRQSEFVAILGPSGSGKTTLLNMLGGLDQYDSGNMIINGLSTKKFGESDWDTYRNNSVGFIFQSYNLIPHLSIVDNVEMGMTLSGVPKSEKRQKATYVLEKVGLGNHIHKKPNQLSGGQMQRVAIARALANDPEIILADEPTGALDTQTSEQIMDLIKEIAKDKLVIMVTHNPELAEEYADRIVSFSDGKIVSDTNPFVSENNSNDYKPKKTSMNFLTALKLSGNNIVTKKWRTALTAFASSIGIIGVALVLSLSNGFNKQINEFEKDSLSNYPISIEQNSMSLGMSPSSKSKDKEKTEFPNKSMIYPYDSSENAAVHANAISTEYVDYIKKIDSSLINGISYTRNVNMNILKKQDGKVVSMNTSAAAFSTYPSKGDSFETDYLKSYYDVLAGSYPKNEKELVLVVDKYNQVDTNILEALGFSANSKNINFDSMIGTEYKLIYNDDYYTQSGKYFTVNGDTTNLENLYNNKNAVTLKISGIIRIKEDANVSNLSTGIVYSDQLAQDFIENAKNSQIVLAQKEAKYNVMNGNLLTEKTSTTTAAVHPTPSMATNTTSNVETKDDVLASLGATSSPTSISIYPVNFEAKDNITNYLDDWNKKLKEEDHIVYTDMASMITSLTGNIMDGITIVLVAFAGISLVVSMIMIGIIIYISVLERTKEIGVLRALGARKKDITRVFNAETFIIGFCSGGLGIAITYLLTIPVNSILYKFTDLNNVAQLNPLHAIALVITSIVLTMIGGAIPSKMAAKKDPVIALRSE
>CP014174.1|AUN20905.1|1023437_1025045_+|cell-shape-determining-protein
MKKKIYSSFIVLSLIISMALIYFLMPVFSVKFYSFYIVFIIIALLLSINVSLNKGKESSKIYGIPVILIGLFIVMFIISLPIFRASSYKSLLPTPKYEEFSKNITPIDIKEIPTVNQKYAELLADKKLGEETSLGSKVELGTLTLQNVNGKLYYVAPLVHSGFMKWLLNDSTPGYITVSATDDKDVKLVTKLNGKDIKIRYQPKGFLNDDLKRHIYLKGTMNRGITDLTFELDDKGNPYYTATIYENKVGMSGQKAVGTAIVNPETGEVKKYTVENTPKWVDRIQPQSFVENNLKKWGKYIKGFFNFSGQDKLKTTEGTGVIYNNGKCYYYTGLTSVGKDESSIGFALVDTRTQQTRIFKIAGATETASMKSAEGKVQNLGYTSTFPILINVDNVPTYFTTLNDKNDLTKMFAMISVTDYNIIGTGESITECKSNYIKNLASKGNLINVGSTGKEENITDTIERINSYVVGNSTIYTFILKDHKDKIFNAGISISNELPITKEGDKVNIRYVDTKQDTINITSFDNIEFKQQSIK
>CP014174.1|AUN20904.1|1021580_1021790_-|acetyltransferase
MDSTAELEKSKNFDERLSIVIDSSREEIVMDGIVPSSTYLAIRLVYNKLIGMIDIRHKLNDYLFQNDIL
>CP014174.1|AUN20914.1|1036472_1037237_-|MerR-family-transcriptional-regulator
MHYKIKEVADMAGISVRMLHHYDKIGLLDPESVSDAGYRLYSDENLDRLQQILFFKELNFPLQEIKIILDSPNFNKKEALETHKQLLLEKKIRLEKIIQSVDKTISSIEGGIKMNKKEVLGAFDMTEIEEHQKKYSEEVKNKYGNTSAYKESNEKTSKYTKEDWNNIMKDWDIIYKKLANLMDKNPDDKEVQEYIHQFREHISKNFYDCTPEIFRGLGELYVNDERFTANIDKYKTGLSKFLREAINVYCDNIK
>CP014174.1|AUN20915.1|1037942_1039424_+|cobyric-acid-synthase-CobQ
MAKIMIQGTASSVGKSLIVAALCRIFKQDGYSVCPFKSQNMSLNSYITLDGKEMGRAQVLQAYAAGLEPEAYMNPILLKPTSDKKSQIIVNGKVYGNSTAMEYHNLKIKFKDMLKEQFEKLEEDFDIVVMEGAGSPAEINLRDRDIVNMGMAELVDAPVLLVGDIDKGGVFASLAGTMLLLNEGEKERVKGTIINKFRGDVEILKPGLDMLEDIIHIPCLGVVPYTRLQLEDEDGAVEFNKKAYAPIDIAVIKMPHISNFTDLDALKSEEDVSIRFVTSKEEFKEPDLLIIPGSKNTIEDLLYLRQCGLEERIKEYSREGKIIGICGGYQVLGSKIKDPYKVETDLGEIDGLNLLDMETIFEKEKVTTRVSAKLINEETENIVYGYEIHMGISKYSENIKPLFKIYDKNGEKVDYFDGAINEKGNVMGTYIHGVFDGVVFREKIINELRVKKGLKKKKSQMYEHMREKELDKLADIVRQSLDMEKIYSIIGMK
>CP014174.1|AUN20916.1|1039425_1040388_+|cobalamin-biosynthesis-protein
MYLNITTNFIDIIIAVFIDWIVGDPYWFPHPVIYIGKLISFLEKKFRARVKNEENLKIYGEVIVMIVCFASFLIPFMILQAFKFNFYIYHGLNILIIWTTLAAKCLHEEAIKIYYALYKENIEEARLKLSYIVGRETKDLIGNEIMRADIETVAENASDGVIAPLFYAIIGGAPLAMMYKGINTMDSMLGYLNDKYRYIGFFPAKVDDIFNFIPARLTGILMCISAPIVGGNPFKSFKIMIRDRKNHKSPNCAYPEGATAAALKIQLGGTNVYFGQVVEKPTIGDKIKELAPIHIKESIKLMYASEALMIVMCTIIFKLF
>CP014174.1|AUN20917.1|1040606_1041695_+|aspartate-aminotransferase
MHGGDIYTEGILKEKELIDFSSNINPLGLPDSFKDNLQEALNWVQVYPDIQYRNLKRNLIDYLSFSLGYFYKEKVEKPNIKEENLVLGNGAVEIIDLAISNLKSISILVPSFVEYELCAKKWNVQIDYCNLNEDMTYNYENIKKSLEKTEGIILGNPNNPNGSVIDKEKFIYILDYCEKNNKIIILDEAFIEFTGKNSFSFLNLCERYKCIFIIRALTKFFSMPGIRFGYGISFNNEFLNKIREKQNPWNINCFAEIAVKYVLKDEDFIEKSINYIEKEKIFMHENLKKCDLFHSVYSTYSNFVLCKLKDITGDELKNRLLEKGFVLRVCKDFKNLNNNYVRFAIKTRELNQALVNILKEIK
>CP014174.1|AUN20918.1|1041968_1042688_+|cobalamin-biosynthesis-protein-CbiM
MKKKYLFLLTTALVLALSQSAYAMHIAEGFLPPKWAALYFVLSAPFIVIGVKHIRQKTKKNKDLKMLLAVVAAYAFILSAMKIPSVTGSCSHPTGTGLAAIIFGPFVASVVGVIVLLFQAILLAHGGITTLGANTFSMGIVGPIVSYLIYKGLKNKNQKLAVFLAASLGDLATYTVTSLQLALSFPAKTGGVMAAFAKFATIFSLTQIPLAIIEGLITIMIFEFMMKYSKEELKTLSEV
>CP014174.1|AUN20919.1|1042691_1042991_+|cobalt-ABC-transporter-substrate-binding-protein-CbiN
MKKQNIIITIVSVVVILASLFIGGARGGEFAGADDQAEGIIEEMNKDYEPWFESIWEPPSGEIESLLFASQAALGAGVIGYYIGKKKNAKNNNASIKNQ
>CP014174.1|AUN20920.1|1042953_1043652_+|cobalt-ECF-transporter-T-component-CbiQ
MLRTIMLLSKTSKLSNIHPLEKVILSIIPIVILGFTQNYIIVFCNILFFLFMNLISKNNKKIFAKITLEVTAFAAISSITFAFDYGIVYTLTLIFKSVSAGLCLSFFSLTTPIDDMLYCLGKKEYLKDICDIAKGMERFLVVINDEYNILYSSIKSRGGFDTFKLTIRNTGKMAALLFINTLSRWKIIKEGLDSRGYVGYMPYLDRNFDFSYIRFLSILSYIILILLLVIFF
>CP014174.1|AUN20921.1|1044060_1044723_+|precorrin-2-dehydrogenase
MEWINLQEKYNFIALKSKRIRILIIGGGRAAFIKGKAFLDRGCSLYILAPKFSKDVLDLKTYDNVEFIKNNYDEKYILDKHLVVIATEDEEVNNEIRNNCDALSKLYIDCSDKDKSLCFNSFQRESKTMVLALNNKIGCPKATYFIGEKIKKDLERYDNYIEYVTYIRSITKNNPMKDEIIDFICSNDFHFFFEKGYGNLILSMFYGGMDFEFCNSHTKK
>CP014174.1|AUN20922.1|1044691_1045564_+|hydroxymethylbilane-synthase
MNFVIATRRSKLAQVQTEIIIDLLNKKHDIECEKLLIETVGDKILEVSLDKIGGKGLFVKDIEVAMLEQRADAAVHSMKDVPYEMPKGFEIIAIPEREDVRDAFISLDNIKFKDLRKGAKIGTSSRRRAAQLKLLRPDLDIVPIRGNVQTRIEKIKKENLDGIILAVAGLKRVNLDHLITDYFDTKEMVPAIGQGALGIEVMEEHPKKDLFKDLDHYNSKICVLAERAFMRELDGDCHSTIGAYASIKDNIMHIIGIFERKNKIIKKEITGTKDQYEKLGISLAEHILKD
>CP014174.1|AUN20923.1|1045699_1047160_+|uroporphyrinogen-III-C-methyltransferase
MSKVYLIGAGPGDEELITLKAIRALKKCTAVMYDRLANGELLKYLAPNCEIYYCGKEPGCHYKSQDEINKMLVKLAKEGHIVGRIKGGDPYVFGRGGEEALDILEENIEFEVIPGVTSPVSVLNYAGIPITHRGISRGFHIFTAMTKDKLDIDWKSVVNIGGTLVFLMGLGRLELITKGLIENGMDKEGKVAVVMKGTTSKQKKVIGNLENIVEKVKEAKLESPVIIVVGEVVSFSDKLNWYEKKPLFGRNICITRTKEQAKELKVQLLDLGAEVTEINSIEIKNTEDNLKSYLSKLKEYDYIALTSVNAVKIFFDYLIKENIDIRNINAKFAAIGPATSEAIRIRGIMPSIKSKHFVAESLFEEMRKHIQKGDKILVPRSKDARPFLVDALRKEGCTVDEVHIYGTLCGQCTYTERFENADTVLFTSPSTVRNMISMVGIDSIKEKSIIAIGPITARELDKNNIECSICDEYSINGIIDKLLDLN

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Crispr_ID: CP014174_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP014174_2

1103478-1103569

Orphan

III-B

Consensus_repeat	Method
AACATTAACATGAGATGTATTTCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP014174_2

>merge|CP014174|2|1103478-1103569|CRISPRCasFinder
AACATTAACATGAGATGTATTTCTTTCTATACTGATGACCAACAACATTAAACCCTGTTTCCGTTGAACATTAACATGAGATGTATTTCTTT

>CP014174|2|2|1103478-1103569|CRISPRCasFinder
AACATTAACATGAGATGTATTTCTTT	CTATACTGATGACCAACAACATTAAACCCTGTTTCCGTTG
AACATTAACATGAGATGTATTTCTTT

Protein	Signature genes	Signature genes Name	Protein_function
CP014174.1\|AUN20992.1\|1112150_1114280_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
CP014174.1\|AUN20985.1\|1102183_1102723_+\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|376504
CP014174.1\|AUN20981.1\|1099410_1100256_+\|glyoxal-reductase	unknown	unknown	gnl\|CDD\|381383
CP014174.1\|AUN20996.1\|1116845_1119320_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378702
CP014174.1\|AUN20982.1\|1100356_1100680_+\|competence-protein-TfoX	unknown	unknown	gnl\|CDD\|225612
CP014174.1\|AUN20988.1\|1105830_1107999_+\|phage-infection-protein	unknown	unknown	gnl\|CDD\|224428
CP014174.1\|AUN20983.1\|1100725_1101580_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP014174.1\|AUN20993.1\|1114451_1114883_+\|ferritin	unknown	unknown	gnl\|CDD\|153105
CP014174.1\|AUN20989.1\|1108024_1110184_+\|phage-infection-protein	unknown	unknown	gnl\|CDD\|224428
CP014174.1\|AUN20990.1\|1110657_1110960_-\|hypothetical-protein	unknown	unknown	unknown
CP014174.1\|AUN20991.1\|1111150_1111906_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379379
CP014174.1\|AUN20977.1\|1097346_1097811_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
CP014174.1\|AUN20978.1\|1097837_1098281_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
CP014174.1\|AUN20987.1\|1103929_1104937_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
CP014174.1\|AUN20994.1\|1115165_1115711_-\|phosphodiesterase	unknown	unknown	gnl\|CDD\|181869
CP014174.1\|AUN20979.1\|1098433_1099027_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377771
CP014174.1\|AUN20986.1\|1102758_1103250_+\|hypothetical-protein	unknown	unknown	unknown
CP014174.1\|AUN20984.1\|1101945_1102128_+\|hypothetical-protein	unknown	unknown	unknown
CP014174.1\|AUN20980.1\|1099056_1099293_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378906
CP014174.1\|AUN20995.1\|1116347_1116731_+\|two-component-system-response-regulator	unknown	unknown	gnl\|CDD\|381110

Protein	Function_ID	Function_description	E-value
CP014174.1\|AUN20992.1\|1112150_1114280_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
CP014174.1\|AUN20985.1\|1102183_1102723_+\|signal-peptidase-II	gnl\|CDD\|376504	pfam01252, Peptidase_A8, Signal peptidase (SPase) II.	6.12025e-14
CP014174.1\|AUN20981.1\|1099410_1100256_+\|glyoxal-reductase	gnl\|CDD\|381383	cd19157, AKR_AKR5G1-3, AKR5G family of aldo-keto reductase (AKR). Bacillus subtilis glyoxal reductase (GR), uncharacterized oxidoreductase YtbE, and Bacillus aryabhattai aldo-keto reductase are founding members of aldo-keto reductase family 5 member G1-3 (AKR5G1-3), respectively. GR (YvgN, EC 1.1.1.283), also called methylglyoxal reductase, reduces glyoxal and methylglyoxal (2-oxopropanal). It is not involved in vitamin B6 biosynthesis.	1.41319e-168
CP014174.1\|AUN20996.1\|1116845_1119320_+\|hypothetical-protein	gnl\|CDD\|378702	pfam11738, DUF3298, Protein of unknown function (DUF3298). This family of bacterial protein C-terminal regions is highly conserved but the function is not known. Several members are annotated as being endo-1,4-beta-xylanase-like, but this could not be confirmed, and the structure can be defined as a heat-shock cognate 70kd protein 44kd ATPase.	9.60927e-16
CP014174.1\|AUN20982.1\|1100356_1100680_+\|competence-protein-TfoX	gnl\|CDD\|225612	COG3070, TfoX, Regulator of competence-specific genes [Transcription].	1.72747e-16
CP014174.1\|AUN20988.1\|1105830_1107999_+\|phage-infection-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	1.6776e-122
CP014174.1\|AUN20983.1\|1100725_1101580_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.32818e-09
CP014174.1\|AUN20993.1\|1114451_1114883_+\|ferritin	gnl\|CDD\|153105	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.	2.70117e-55
CP014174.1\|AUN20989.1\|1108024_1110184_+\|phage-infection-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	9.86541e-115
CP014174.1\|AUN20991.1\|1111150_1111906_+\|hypothetical-protein	gnl\|CDD\|379379	pfam13803, DUF4184, Domain of unknown function (DUF4184). This domain of unknown function contains several highly conserved histidines.	1.66064e-83
CP014174.1\|AUN20977.1\|1097346_1097811_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	3.6246e-22
CP014174.1\|AUN20978.1\|1097837_1098281_+\|N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.84301e-09
CP014174.1\|AUN20987.1\|1103929_1104937_-\|adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	2.19488e-150
CP014174.1\|AUN20979.1\|1098433_1099027_+\|hypothetical-protein	gnl\|CDD\|377771	pfam07081, DUF1349, Protein of unknown function (DUF1349). This family consists of several hypothetical bacterial proteins but contains one sequence from Saccharomyces cerevisiae. Members of this family are typically around 200 residues in length. The function of this family is unknown.	1.3824e-80
CP014174.1\|AUN20994.1\|1115165_1115711_-\|phosphodiesterase	gnl\|CDD\|181869	PRK09453, PRK09453, phosphodiesterase; Provisional.	1.96628e-108
CP014174.1\|AUN20980.1\|1099056_1099293_+\|hypothetical-protein	gnl\|CDD\|378906	pfam12663, DUF3788, Protein of unknown function (DUF3788). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length. This family may be distantly related to RelE proteins.	1.17392e-13
CP014174.1\|AUN20995.1\|1116347_1116731_+\|two-component-system-response-regulator	gnl\|CDD\|381110	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY4 and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.52388e-22

>CP014174.1|AUN20986.1|1102758_1103250_+|hypothetical-protein
MKKRNNLIIVCLAVIIIAGSGIVYKNYFTNIDSNSYLSSKDESERSIFCHEDDKSSKNTHSFDFKKFDGKWSLMKFTSSKGNKININDNTKINKGKFYIVILDSQYNIIAKKNESNQNGNINFTTPKDGKYLIRIVGAKASGKFDVSVNSDRNIDISHIDFFD
>CP014174.1|AUN20985.1|1102183_1102723_+|signal-peptidase-II
MKKSLRVILLVLALVLIDQSIKIYIYNNLMNKEFYIFGSIFGFKPIINTKYSYFNSFGNMGIGLITHIVLNIVMLFLILIIFYFIKERYSNNKIIYCLFVLVCAAAICSLIDKVFWGGSLDFISFKNFFIFYLKDVYISVFEIVTMLCVILNYKKLEAINEKTIYNDFKSYIKLKCFKK
>CP014174.1|AUN20984.1|1101945_1102128_+|hypothetical-protein
MKDIIIILALIIDVVMLVVGKKTKKYKYVNAIGKVIILVCLAMAVPDFIRGFIDGMTAVQ
>CP014174.1|AUN20983.1|1100725_1101580_+|GNAT-family-N-acetyltransferase
MFIYDTLENIGIEILHETFLNAFSDYQVKMDLPLFKFQHMLQRRGYVSKVSIGAFNNETLVGFVLNGVRNWDGKLTAYDTGTGIIEAYRKQGITSNMLLNVRRLFQQMGVEQYLLEVIQSNTSALQLYKKQGFKILRDFQCFHLDKNKYNPITTYKVEHVDMINPNDWRELTEFWDFAPSWQNSIDSINAVSDSFIYSIVHLDDNIVGYGVIDKKTGDIPQIAVNKNYRRKGIAKSIITDLMKNTESYNINVINVDGRSKSMKDFLLKLGFECGVSQYEMILKL
>CP014174.1|AUN20982.1|1100356_1100680_+|competence-protein-TfoX
MASNIEFVEYVCDQISGVGDITYKKMFGDYGVYCNEKIIELICDNQFFLKITKAGKDLLHEAIEAPAYKGAKPSFLIESLDNREYLAKIVSATYKELPMSKPKKTKK
>CP014174.1|AUN20981.1|1099410_1100256_+|glyoxal-reductase
MQDIKSYTILNNGIKMPWLGFGTYKVENGDTVIQSVKEALKIGYGHIDTASYYGNEEGVGTAIKESRIPREDIFLVSKVWNSEQGYDKTLKSFEDSIKKLGTDYLDLYLIHWPQPLSKETWKALEKLYKEGRVKAIGVSNFLVDHLKWLLEDAEIMPMVNQVEFHPQLIQKDLIEFCSKNNIQLEAWSPLMRGKVFEIELLQDIARKYGKTISQIVLRWDLQMGVVTIPKSINPSRIKENADIFDFEISKEDMDKIQQLDKGLRVGSDPNKVYPCQSISNK
>CP014174.1|AUN20980.1|1099056_1099293_+|hypothetical-protein
MSRKNSFSCVLVYGKKEIEQFESRRDEFSDYMKEIFNETKHYHDGKWLLIRIQDDKYINELIEMIKIKKKSKKNILHK
>CP014174.1|AUN20979.1|1098433_1099027_+|hypothetical-protein
MFRFNTKEGKWFFEPKNYLIEEDKVEIITEPNTDFWQRTYYGFRNDNAHVLYVTTDEEYFSFTVKTDFNSTALFDQCGLAIYQNSENWAKACIEFHDNNTSWLGSVVTNHGYSDWATMDIGSSVKSMWYRLSRRGSDYCFENSFDGINFKQMRIFHLFEGAKEINFGLLACSPSKNSFKATFTEMKITDCLWEEHKA
>CP014174.1|AUN20978.1|1097837_1098281_+|N-acetyltransferase
MEIKIIKENKRSFLDLLLLADEQESMIDKYLNRGEMFALYDGDLKSICVVTNEEEGIYEIKNLATYEKYQGQGYGSRLIKFIFEYYKDNCKTMLVGTGDSPLTIPFYKHCGFKISHRIKNFFIDNYDHPIYESGVQLIDMVYLKKDF
>CP014174.1|AUN20977.1|1097346_1097811_+|GNAT-family-N-acetyltransferase
MNIRMYQLEDCREIVELFYNTVHSINSRDYNSAQLDVWAPKEIDIVSWDKSFSQHCSIVAEESDVIIGFGDLDATGYLDRLYVHKDYQGIGVATTIVSELENYAQENHISIVTTNASITAKPFFKKRGYEVVKEQFVERNGQFLKNFIMKKVLR
>CP014174.1|AUN20987.1|1103929_1104937_-|adenosine-deaminase
MNFKKLPKIELHCHLDGSLRIDTILDIAKKDNIPLPSYNKKELINYVSIMDDCNSLDEYLNKFFIPNKVMQTKENLKRIAFELLEDVAADNVKYIEVRFAPLLHVEKGLNIEEIIESVLAGIKEAEKLYDIKGNLILGCMRNMDIPSAFEVVKKGAKFIGKGVVAIDLCAGEEPHFPGKYIEVLKLAKECGYRITIHAGEAGVGENVLEAINLLNAERIGHGIYIKNCAEAYKLVKEKNIPLEVCPTSNLHTKAFESYETHPFMDFLKDGIKVTINTDNMTVSNTTITKELEMLNKFCGLSIEDYKILYLNAVEASFASPETKEILKSYANEITA
>CP014174.1|AUN20988.1|1105830_1107999_+|phage-infection-protein
MNRFKNIIKVYKRDIKSLNKNFIAIIIILGVCVLPSLYAWVNIKACWDPYENTSTVPIAVINNDKGTDFGGKELNVGNEMVKKLKSNDKIGWKFTNKKEADMGVIDGTYYASIEIPKDFSADIVSVLSDNPKHPEIIYKVDTKENPVAAKITGMAKNTLINEITTTFITTVNKTVFSSINEIGRNLEKNKNEIIKLKESIISMNRNMDLILAGLESVNTNSKNLNEYLSVVRTTFPEITKGLENINSKSSNTNETINQTNNIFNNSLNNINVILKQAISTNNRVQSVLDNLIVLNNESSSNEANSSIANLIMDIDSANKNIDSMVEFLEKINNTKPNTEVSKFIVSLNNVKGALNEEKQKLLKIQEIASNSSKVNENSINELKRNISNTNKQIESVMNVFNSNTRQELSTIINNFKNSIQDASKLIKAGNGLNTQIENLLATSTKGADLSAKLSKELIDKLTEYKGIIGQLSKKLELVSNDDLIQIISVLQNNPMLMSQTAAYPFNIKEEAVYTIPNYGSAMTPVYSVLALWVGTLILVSLLKTEVVDFEGSENITIRQKYFGKMLTFITLAAMQGFIVAVGNKAILGVYTVSFPLMLAFSVVSSIVFAIITYTLVAIFGKFGNAIAIVFMILQLAGSGGTYPIQVDPLIFRILQPFFPFTYSIGGFREAIGGPLVSSVILDFIMLILMGGIFVLIGFFLKSPLHHKISKFDEDFKASGISE
>CP014174.1|AUN20989.1|1108024_1110184_+|phage-infection-protein
MKKVFRIFSRDLKNIVKHPAAIIVVLGLCFIPSLYAWINIEACWDPYANTGNLPIAIVNKDEGMMIRGKYTNVGNGIIESLKGNKKMGWVFVDEWQANYGLNEGKYYALIEIPSNFTSGLASLKTTDPQKPNIIYRVNEKSNAIATKITNAAKGSLAKEIQTNFVYTVNKEAFKLLNNTGGQLEKNKSKILGIKSTLELGNKSIGEVKNIIDDASKDSESLKQYFNDTKDKLPLITDQINNLQKATEASKNLVNETERDLNGIAKNINNDMIYRESTNSKINSILTNLKEYNNVSNNSEMIKLVDEASKLCDSINSNIDGTIKSLEIVNILKPNKIIEELINSLKNLQEKVNGEKNKLTELKNKISTSNNNKQNINQVVESILLLNDEINKNMRNTSNIFYNQTTMIIENTAKGLNNRLDTANDILDTTKLVIPQLKALGDFGVGTSDAALKDGKKINNKLAEFKKTINKLEEKTSSLTEDNLDKIINLTQKNPEQMASFISSPINIKEEEIYNTGIFGVGLTPFYTVLAIWVGVLLMSSLISVEAEEFEGEKKLTHLQVYFGKLLLFLSIAIIQGVIVTLGDVFILGIKPASMGLLMVFTIVTAITFTFIIYTLVSIFGNLGKAIAVVIMVFQIAGAGGIYPIQTNPKIFGVLQPLWPFTYAIAGFREAIAGPVRAAVIKNLGALFIFSIGSLLLVVLKKPLHKVTEYMNDKFIETGL
>CP014174.1|AUN20990.1|1110657_1110960_-|hypothetical-protein
MGKEPSVKSSANLLAIVSLIMSIIVILPILNWLFKITPWQKLEGLPLFFGLLISPFGFILGILSIKIQSNKLGKIGVIINTLLFLLPFIYMTLGVLILGP
>CP014174.1|AUN20991.1|1111150_1111906_+|hypothetical-protein
MPFTFSHPAIVLPLEEKWNKYFNFTALILGSMSPDFEYFIRFKPMATIGHGLIGFFLYNLPLCFILAYLFHRIIKKPLIAHGPKPIDSWYYNTALKPWRINSLAQVLVFSYSAIIGMITHVFWDSFTHKGGKFVILFEGLRKNIEILNYDIPVYKILQHGSTLLGVIFIILYIYSKRNKRINWKRINRIPATNNKEKISYFTTIFCTALIVLFVYISLLKVNFSIKNVGSFVVTFINGLFIGTIIASVKYR
>CP014174.1|AUN20992.1|1112150_1114280_+|DNA-helicase-RecQ
MLEDAKNLLKKHFGYNEFRKAQEKVIESILKKEDTVAIMPTGAGKSICYQIPALIFEGVTVVISPLISLMKDQVDSLKEVGIEAAYINSSLNNLEIEERIFNAREGLYKLIYIAPERLESDSFVRSLNNLNIALVAVDEAHCVSQWGHDFRPSYTKISNFIRKLSKRPSVTAFTATATETVRRDILNSLELQNPKVFVTGFDRENLSFSVIKGEDKEKFIFGYLESNIGKVGIIYTSTRKEAESLYNKINKKGYKVGVYHAGLNDEERKKTQEDFSFDNIEIIVATNAFGMGIDKSNVRFVIHHNIPKNMEAYYQEAGRAGRDGEESECILLFSPNDIRLQKYFIDESFLSPERKNNEYNKLRAMVDYCYTSKCLRSYILEYFGEDALEEKCNNCSTCNDNREEKDITLEAQKIFSCVYRMKERFGVNMVADVLRGSKNKKLLSLDLDGLSTYGIMEEFTQKDIVALMNKLIADDYMVTTDDKFPVVRLRQKSYDVLKGKEIVSIKVSKIEKKVKADNELFEILKQLRKTISQEESVPPFMIFPDATLKELSEYMPTKEEDLLKIKGIGERKAKVYGERFIEAITEYMNEKGIDINNMDNYDSAKSNKESKIKTHVLSYNLYKEGKTIKEIAEERNLKAITIQEHLFKCLSEGMEVDLDNFIKKDYEKLILDTIKKVGGTKLKPVKDELPPEVDYMCIKSVWYKYKDII
>CP014174.1|AUN20993.1|1114451_1114883_+|ferritin
MDELDIINENQLGIAANNEKIKTDLEGQFRAETGEVGLYIAMARVAQRQGFPEIAEVLKVIATEEAEHAARYAELNGKVSDCTKENLQKMLQGEIGSNKMKKSLAVKAKEENIDEVHDFIDEASRDEARHAKMLKGLLDRYFG
>CP014174.1|AUN20994.1|1115165_1115711_-|phosphodiesterase
MKLFFMSDIHGSAYYLEKALHTFEEEKADYLIILGDELYHGARNPLPKGYDPKKVTEILNSYKDKIIAVRGNCESEVDQMVLNYPIMSDYSIVLYNGKRLFLTHGHIFNKDNMPNISDGDALIYGHTHIPLAEKTNNIFVINPGSITFPKENTPHCYGILSDNLFKIKTLEGNTFKEISLI
>CP014174.1|AUN20995.1|1116347_1116731_+|two-component-system-response-regulator
MSSSQKNILVIDDSASIRSFVRNILEKANYKVYEACDGEEGIEVYKKCGNIDLVMTDIYMPKKSGLEVVVELQNKYKGTQIIVFSDGGKENFTNDSGVCEALGAAYFIRKDLIKDKLLDLVNIIFSK
>CP014174.1|AUN20996.1|1116845_1119320_+|hypothetical-protein
MIERNLFNIINKYLPMGSQIIVEEDNNNEPLIIRANLNGYGLGEIIVAYRWQEENYIMVLERYCNQWSVIDNIRGKGYDISYLKVAPITDNAMDNLIIGWRRGAIWSELDILQWTPYGFKRVIDEGIYYSKIEVENMKSVKAMNDKNEIALWLHDTAEAYKVEIYRWSLGKLVKAEDVYPYYFKKVIDFYKTKLQEEPDLPVYWYYLADAQIKGEMYEDALKSIDKALELPKAYPSKKELIKLRDYILYYKKCKNINLYPAPMNTIKGVRWGYINEKGEFVIKPLYNLALEFQCNGLAVVEIDNLYGIIDENQNYIVKHKYGFISDFSEERAIVIDNERFNIINEKGEELIPKTENYSYIGNFKEGRAQYGVIDSNKGYLYGYLDREGRIIIPAQYEYGNDFYEGKAVVRIKENEYALINIKGEILNKYEYASVGNLREGLLSFKKNMGEKYGFIDEDGNVVIKPQFTYAQNFSEGRSVVNVSGNIMNNYGVIDKEGNYIITPKYNDIILLGENRVAVGVAIDKTSPFIGSKYAIADTEGNILTDFIYYGILNYKNGIASAYDDKNTFFIDKEGNKIENLPIVEGSGTLTVENELIKAYVDYKISYFDKEGNLIWEENSVISLNNQYKVIEEKYKPNKDYLVYYPKVQGIGDKALEDEVNNRLKILSEVKPIEENVQLEYNYLGDFKIEFFNKNLLELELDGYNFHFGAAHGMPSKIYTKIDLTTGEFYELKDLFKEDSDYVKVLSDIIGEQIKNNPEYSYIFPDSYNGIKEDQPFYVSQDTLYIYFYPYEIAPYAAGFPTFKIPYKHIIDIINEAGAFWMSFN

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Click the colored protein region to show detailed information

Crispr_ID: CP014174_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP014174_4

2286356-2286715

TypeIII

III-B

Consensus_repeat	Method
ATTTAAATACATCTCATGTTAATGTTCAAT	CRISPRCasFinder
ATTTAAATACATCNCATGTTANTGTTCAAT	CRT
ATTTAAATACATCTCATGTTAATGTTCAAT	PILER-CR

5 spacers

csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

The CRISPR arrays of CP014174_4

>merge|CP014174|4|2286356-2286715|CRISPRCasFinder,CRT,PILER-CR
GTTTAAATACATCCTATCTTAGTGCTCAATCTACCAGAAAAGATACAACAGGCAATAAGAAGCCAATTTAAATACATCCCATGTTACTATTCAACCTTTGGTCTTGTAGCTGGTGTAACTGTTTTAACATTATTTAAATACATCTCATGTTAATGTTCAATGGACACAATACTCTCCAGCGGGAATGGCACTAATAAAATTTAAATACATCTCATGTTAATGTTCAATAAAATCATCTTTATGAGTATTAGATCCATAAATTTATTTAAATACATCTCATGTTAATGTTCAATTTCTTAAATATCCAGGTGCATAATTATTTTTCATCAATTTAAATACATCTCATGTTAATGTTCAATC

>CP014174|4|4|2286356-2286715|CRISPRCasFinder
GTTTAAATACATCCTATCTTAGTGCTCAAT	CTACCAGAAAAGATACAACAGGCAATAAGAAGCCA
ATTTAAATACATCCCATGTTACTATTCAAC	CTTTGGTCTTGTAGCTGGTGTAACTGTTTTAACATT
ATTTAAATACATCTCATGTTAATGTTCAAT	GGACACAATACTCTCCAGCGGGAATGGCACTAATAAA
ATTTAAATACATCTCATGTTAATGTTCAAT	AAAATCATCTTTATGAGTATTAGATCCATAAATTT
ATTTAAATACATCTCATGTTAATGTTCAAT	TTCTTAAATATCCAGGTGCATAATTATTTTTCATCA
ATTTAAATACATCTCATGTTAATGTTCAATC

>CP014174|4|1|2286356-2286714|CRT
GTTTAAATACATCCTATCTTAGTGCTCAAT	CTACCAGAAAAGATACAACAGGCAATAAGAAGCCA
ATTTAAATACATCCCATGTTACTATTCAAC	CTTTGGTCTTGTAGCTGGTGTAACTGTTTTAACATT
ATTTAAATACATCTCATGTTAATGTTCAAT	GGACACAATACTCTCCAGCGGGAATGGCACTAATAAA
ATTTAAATACATCTCATGTTAATGTTCAAT	AAAATCATCTTTATGAGTATTAGATCCATAAATTT
ATTTAAATACATCTCATGTTAATGTTCAAT	TTCTTAAATATCCAGGTGCATAATTATTTTTCATCA
ATTTAAATACATCTCATGTTAATGTTCAAT

>CP014174|4|1|2286487-2286714|PILER-CR
ATTTAAATACATCTCATGTTAATGTTCAAT	GGACACAATACTCTCCAGCGGGAATGGCACTAATAAA
ATTTAAATACATCTCATGTTAATGTTCAAT	AAAATCATCTTTATGAGTATTAGATCCATAAATTT
ATTTAAATACATCTCATGTTAATGTTCAAT	TTCTTAAATATCCAGGTGCATAATTATTTTTCATCA
ATTTAAATACATCTCATGTTAATGTTCAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP014174.1\|AUN22001.1\|2285734_2286223_+\|50S-ribosomal-protein-L7ae	unknown	unknown	gnl\|CDD\|227595
CP014174.1\|AUN22002.1\|2287502_2288192_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
CP014174.1\|AUN22007.1\|2292592_2292991_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
CP014174.1\|AUN22004.1\|2289692_2290784_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863
CP014174.1\|AUN22010.1\|2296028_2296643_-\|galactoside-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
CP014174.1\|AUN21997.1\|2281536_2282253_-\|transaldolase	unknown	unknown	gnl\|CDD\|183481
CP014174.1\|AUN21994.1\|2279385_2280750_-\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|236502
CP014174.1\|AUN21995.1\|2280762_2281047_-\|PTS-maltose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|99905
CP014174.1\|AUN21992.1\|2276401_2276755_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379915
CP014174.1\|AUN22000.1\|2284313_2284907_-\|acyl-phosphate-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|172889
CP014174.1\|AUN21998.1\|2282488_2282890_-\|hypothetical-protein	unknown	unknown	unknown
CP014174.1\|AUN21996.1\|2281075_2281513_-\|PTS-maltose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|238129
CP014174.1\|AUN21993.1\|2277080_2279174_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|226234
CP014174.1\|AUN22006.1\|2291830_2292580_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
CP014174.1\|AUN22011.1\|2296966_2297320_+\|peptidase-M24	unknown	unknown	gnl\|CDD\|379790
CP014174.1\|AUN22009.1\|2295491_2295986_-\|hypothetical-protein	unknown	unknown	unknown
CP014174.1\|AUN22005.1\|2290773_2291829_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|380071
CP014174.1\|AUN22008.1\|2293009_2295160_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
CP014174.1\|AUN21999.1\|2283227_2283974_-\|transpeptidase-transglycosylase	unknown	unknown	gnl\|CDD\|236545
CP014174.1\|AUN22003.1\|2288208_2289690_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|187878

Protein	Function_ID	Function_description	E-value
CP014174.1\|AUN22001.1\|2285734_2286223_+\|50S-ribosomal-protein-L7ae	gnl\|CDD\|227595	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis].	0.00379916
CP014174.1\|AUN21997.1\|2281536_2282253_-\|transaldolase	gnl\|CDD\|183481	PRK12376, PRK12376, putative translaldolase; Provisional.	3.52947e-157
CP014174.1\|AUN22007.1\|2292592_2292991_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	5.57512e-09
CP014174.1\|AUN22004.1\|2289692_2290784_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	3.88011e-18
CP014174.1\|AUN22010.1\|2296028_2296643_-\|galactoside-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	2.33547e-98
CP014174.1\|AUN22002.1\|2287502_2288192_-\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	0.00384193
CP014174.1\|AUN21994.1\|2279385_2280750_-\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
CP014174.1\|AUN21995.1\|2280762_2281047_-\|PTS-maltose-transporter-subunit-IIBC	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	2.52704e-28
CP014174.1\|AUN21992.1\|2276401_2276755_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379915	pfam17032, zinc_ribbon_15, zinc-ribbon family. This zinc-ribbon region is found on a set of largely microsporidia-specific proteins.	0.000183435
CP014174.1\|AUN22000.1\|2284313_2284907_-\|acyl-phosphate-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|172889	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase.	4.80542e-92
CP014174.1\|AUN21996.1\|2281075_2281513_-\|PTS-maltose-transporter-subunit-IIBC	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	9.05568e-38
CP014174.1\|AUN21993.1\|2277080_2279174_-\|sugar-transporter	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.72803e-58
CP014174.1\|AUN22006.1\|2291830_2292580_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.68348e-77
CP014174.1\|AUN22011.1\|2296966_2297320_+\|peptidase-M24	gnl\|CDD\|379790	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain.	2.05273e-11
CP014174.1\|AUN22005.1\|2290773_2291829_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|380071	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain. Clustered, regularly interspaced, short palindromic repeat (CRISPR) loci play a pivotal role in the prokaryotic host defense system against invading genetic materials. The CRISPR loci are transcribed to produce CRISPR RNAs (crRNAs), which form interference complexes with CRISPR-associated (Cas) proteins to target the invading nucleic acid for degradation. The interference complex of the type III-A CRISPR-Cas system is composed of five Cas proteins (Csm1-Csm5) and a crRNA, and targets invading DNA. This entry represents the C-terminal domain found in Csm4. Csm4 structurally resembles Cmr3, a component of the type III-B CRISPR-Cas interference complex. Studies indicate that Csm3-Csm4 complex binds single-stranded RNA in a non-sequence-specific manner. Structural analysis show, Csm3 and Csm4 have one and two ferredoxin-like folds (also known as an RRM-like fold), respectively. The long beta-hairpin inserted into the C-terminal ferredoxin-like fold of Csm4, is well-conserved in the Cmr3 structure. The corresponding beta-hairpin of Cmr3 binds the D1 domain of Cmr2, as observed in the Cmr2-Cmr3 complex structure. Furthermore, it is suggested that the hairpin of Csm4 is responsible for the interaction with Csm1 (ortholog of Cmr2).	3.43304e-17
CP014174.1\|AUN22008.1\|2293009_2295160_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	4.54862e-98
CP014174.1\|AUN21999.1\|2283227_2283974_-\|transpeptidase-transglycosylase	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	1.38627e-11
CP014174.1\|AUN22003.1\|2288208_2289690_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	3.51889e-09

>CP014174.1|AUN22001.1|2285734_2286223_+|50S-ribosomal-protein-L7ae
MISKKIIAFIAMTIMMISLLIGCSNNTMDKVYNDNIKIASVYDTFGLDKSDEIIESGIYKGKLKLSGSGTIWTYESSSDFDLKVPYILSVKSGKAKIVLISPDNTVVNLVENTDKATMKGTTSLTLPIKKGNNRIKLVGYKKADIDIELHIEKGTFEKISFN
>CP014174.1|AUN22000.1|2284313_2284907_-|acyl-phosphate-glycerol-3-phosphate-acyltransferase
MIIIITSIISFLLGSIPTGYFITKKTCGIDIRTKGSGNIGSTNVKRIVGTKISIITQTIDVLKGIIPVVLGISLSKIVKLPVSIDTYLSIIAIAAILGHDYTPFLKFKGGKGVNTTLGVFIFIAPIPTLTGLAVYFILGLFIRIVSIRSISIGITIPIMCIITKLPIQIIISTTIACILMIIRHKDNLVRLIRGEEK
>CP014174.1|AUN21999.1|2283227_2283974_-|transpeptidase-transglycosylase
MDKFRNMKKSHIALLVIMYMVLMGSLPRFTGWATIFSAIAVGGYFLKNKKDLKELTRKKKNFIFAGIIILAIIGSFNVAVGNNIQNEKLLAEKSKQEQQIKKEQEEKKLAEEQKRIQEEEARKKAEEEKRKQEEEAKKKTEEEAKKKALEEQKKQEELKRKQEEENKVKAENEQAQAAFAQSTGKGDSNSQSNESQNADDNQNYTVYKTRTGSKYHSSGCRYLKKSCYETTVSQARNEGLTPCRVCNP
>CP014174.1|AUN21998.1|2282488_2282890_-|hypothetical-protein
MNILISTCNIGIPVLMIFIGILYKCNLYKKIDKTLDLIVPIAMFFTGFSERDREHLYKNTNKLALVNRKCSLIWSISGVCTLLLTIISLILNKSDIYNTSVILLEPEFLILVIVFITVEYVLKRNFYKKIQQS
>CP014174.1|AUN21997.1|2281536_2282253_-|transaldolase
MKYNDLKIKIFADGADLNGMLDAYNKGIVKGFTTNPSLMKKAGITDYKEFAKEVLAKIKDMPVSFEVFSDDLETMEKEAEVLGNLGENVYIKIPVTNTKGESTAPLIKKLSEKGYHLNVTAIFTIDQVKEVVGALKSGVDSIVSVFAGRIADTGEDPVKIMKEASKICKTKEGVELLWASCREFYSIVEADKCGCEIITVTNDVLKKMPNMGKDLKEYSIETVRGFYKDASSLGFSIL
>CP014174.1|AUN21996.1|2281075_2281513_-|PTS-maltose-transporter-subunit-IIBC
MLKNYINDQVVEVNVEVKNWEEAVRLGGKLLEEDGAVEHSYIDAMVDTVKNMGPYIVIAPGIAMPHARPEAGAKNIRIGLLKLKNPVNFGNEEHDPVDMVIFLCAVDNKAHIEVLGELVQLIEDDDFLKIVRNASTKKEILDYIK
>CP014174.1|AUN21995.1|2280762_2281047_-|PTS-maltose-transporter-subunit-IIBC
MNILTVCGNGIGSSLMLAMKIEEICKENGIAANVESTDFNSAQGKKADLIVTVKELAEQFEGRDVAVVRSYINKKKITEDVLEIIKQKDEELKK
>CP014174.1|AUN21994.1|2279385_2280750_-|PTS-ascorbate-transporter-subunit-IIC
MLGLLQFLRDVLKQPALLMGIMALVGLVALKKPGHKVLTGTLKPILGYLMLGAGADFIVANLEPLGGMIQTGFNITGVVPNNEAIVAVAQKVLGVETMSILVVGLLINLVIARFTKYKYVFLTGHHSFFMACLLSAVLGTSGMKGTELILFGGFLLGAWSAISPAIGQKYTLKVTDGDEIAMGHFGSLAYYVSAWVGSKVGKPEESTENIEIPEKWGFLRDTTISTAITMMVFYIVAAVAAGPEYVSKLSDGMSPILFAIMSSLKFAVGVTIVYNGVRMILGDLIPAFQGIATKIIPDAIPAVDCAVFFPYAPTAVIIGFVSSFIGGIIGMVLLGVAGGVLIIPGLVPHFFCGSTAGIFGNATGGKKGAVIGSFVNGLLITFAPALLLPVLSTLGFKNTTFGDFDFGVLGIIIGKTSNLAGKTGIIIIAMLMLVALIVPNFIKTKSKALNNIEE
>CP014174.1|AUN21993.1|2277080_2279174_-|sugar-transporter
MLNKRCSNILQMIVNNEKPITIKEISKKVNKSPRTVRYDLDKIDDYLTEIEFPKLERKSNLGISLDLKDEEIKKLFKIIGKINNYDYVLSQKERVFYIIYELLNKSEFATINMLSDRMMVSRSTIINDLIEVKKWLSENKITLESSKGQGIKILGRERDLRRAAVKLFFQSMDSINFFNVTTLKLFNDIDIDFIRNTIKIAEEQMETSFSDDAFNNLVIHIAIAIKRIELSKDIIMDSEELKNLRKTAEYVIASGIAKMLEDRFKISIPEDEIGYITIHILGSNTSTLENIVKDDWIYLHLIVFKLIENVENITGINFSKDNKLFDSLAQHIRPAIYRLKHDIKVKNPLIEEIKEKYSYIFESIEEGVKFIEEDIGDSVNQEEIGYLTLHFMASIERSKNKKHRKPNVLIVCATGIGTSKFISNKLKSIFDINIIDTISSHTMEKILKYNKNIDLIVTTIPLKVKGIKCIEVNTFLTEKNISELGLYFAKFIRNNSEECNGSCKYEERDKVQEILNIVKENCTIHDYYKLRNKLALYLNIKDPTLTEDHKPSLKELLKPDFIKLNEEAENWEDAVRKSGEILMNNGCVKESYIDAMVNTVKNMGPYIVIAPGIAMPHAAPEDGVLKTGISMLTLKDPISFGNSEHDPVSVIISICSIDKVNHMKALKELMSIMDQEDFISKVKNIKASSEIDSILYS
>CP014174.1|AUN21992.1|2276401_2276755_-|zinc-ribbon-domain-containing-protein
MIIWGWGKVTKKIIGAVFERTCNYCNTDEVWNLCVVRTWFTLFFIPIIPYKKQYCIACPKCWSYIELTQEEFEKIKIDITSSSNNINEKVVTDNIKYAGKTETQINYLKQMEEYSNK
>CP014174.1|AUN22002.1|2287502_2288192_-|hypothetical-protein
MHYYQLKIRVKLENNINYIQAPYLIGTFINNCMLKNDMLKNIHKKKIYKYVYDSFFPIEKDGIYKREKYYNIQLRTINLNLINKLAIALYNHKFNGIKTVNIDLEVMEPTKINQLYTLKPSIVTITGQPWIKNKHSIDVLIGNLNANLEKKYKQIFNEELENNKSFIKKIKVVNNIPIKYEYKNIILLGNKFEIIVNEDEVSQRKATIALGMGLGEKGSSLGAGFCIYR
>CP014174.1|AUN22003.1|2288208_2289690_-|hypothetical-protein
MDNVLIINLGNSDIEKEGNKIEFGEFREKTKKIYEQLEGANKEEKQEIFKYLDFPIIKAIIDKVDGELKNEKLDKVILAYTNQKFNNNKDTVYLYEILKQKKHLVNNLETDNQDIWEKRLKETNFKQSYNIDFDPSDIDRMYNFYAEEINELNNKKIKKLFFSITGGASAMNFALLINAIEKFSGQLIPCYLSRGKKVAYKVNIAKNLRKQILKRDIKILINNKDYFAAIKMLENLEDGIVDDMSKLELKNIILALKYAEARIQFNFDKCKEYGEKCLDNTAEYREEFSQAVKDILIEKDDYINRLVELKNNAIYLYKKGSYTDFLGRVYRFQEAVYEHILGQYDLIIEKSNGVKINKEILKSRYSDKKEILDNIKIAGNKLEYEKNLTVDAMSKIISTLIDNDDVRNIVNRMEEIKDVKQLRNKSILAHGFEGISKEKIQGKLNCEEKDISKLLEEVMCKILVLFKIGTIEDMFYCENSRYDCILIEMIEKL
>CP014174.1|AUN22004.1|2289692_2290784_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MNYDKIILNLKGQVLTPVHIGCGKKYSPYLDIIKNENKITVLDEEKIIEKLVLNDEIFEEYINILKNKSPNAIEKYNIINILKNNKIEIGEVKKYDLICGNSFNNLIDVNQSIKTKGIPYIPGSSIKGSIRTALIYNKLLKNGIDFGKIKEISNLKNKYYCYLGQDIFRQNDKLIYDDMMKNLLVRDTDIISNNKVKVYLCRAVNLYESIKNGNISTSVKSLNECIEEYTDFTFSIIIKNSLISKEELYNNINSFYEKILLKEIQEIEKLKLNIINSQYKLLLNEINEFRKYNNGFILRIGGMKGIFSNTIDSILSKKELEDIRNAHKNKRKKTGEFPTTKWCVMDEYENIKTTLGWIKIMEE
>CP014174.1|AUN22005.1|2290773_2291829_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKKVILKIDNETKFHIGNGQEILEYIPSDKLYSAIINSLALTYSKYELNKLIEIINEKLQISSAFMGIKIKNKNKGIEKSIDFLPRPYMYIGNNNIISTQLLNRKKFKKINYVSNNVFLDFNKHYDSKKNFINYDFQQGYIIGEKYYVTDREINFLSEDEKKYLEKYKPIINESVQRNYINRFSKESIGTYYDNFKVIVQEKYKDMQLIPYFYFYIKGDLEIDKIMYAIIEGGIGGKRSLGAGTIKDISIEECDDFKENGERFINISMIYPDKQELNYIESYALENRNGYIYSQGPTDLKKPWIRMIKEGGVFTKRIKGNINDINVKDIDYPIYTYGKAFFITLGGNLDEL
>CP014174.1|AUN22006.1|2291830_2292580_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MNLLMGKIFIDGDIILKTGLRIGGGNNSIEIGGIDNNVIKNHRGEPYIPGSSLKGKLRSLLEISTNRLKDGRPCNCGECSICSIFGVGANENKQNLPTRIIVRDAFLNEDIKKQMYEKQGQFKRLELNYTESKYENTIDRLNSKATPRLIERVPEGASFRLQIIYSVFNNKDIDNFNDLIKGMKLLEDDYLGSNGSRGYGQVEFDNLNIKIKVIKDYKTKEVLNKSSLTDIDSVCLKEKLNELIEIKGV
>CP014174.1|AUN22007.1|2292592_2292991_-|type-III-A-CRISPR-associated-protein-Csm2
MEKDYKTDKFREYEEYFKKNVLTLDKINYDQFIEKSKDYSRLLKNNGLTTSMIRKIYNEILKANEAIDLKRLRPILAYTYGRNRVKGLQSLFYTLDDLLKRLNLKTNYLEIENVKEFLEVIIAYMKFYGDRY
>CP014174.1|AUN22008.1|2293009_2295160_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MHICYKSLLYSFLRYVESIDKAMYKENAFKLKDKLLNPILQESYELVTKNIKKKKCKDGTFRLMNIFSNINDSKRKKFNLLKEIDINRYDNILKENGEEIDKAYCINYVKSIIKKLLQNDNEKIYFLMSKYCSNVPFINSKNCDISLFDIAKVTAAIATCKEKNKEEYILIKGDFSGIQSFIFKTSSDGALKTLKGRSVYLTLLQEICAKYIVKELGLSLCNILYSGGGNFYILASKSDENKIKLLRKQLSKLILKAYNGEIYLALGYLSFKEEDFKNFNILWKNIGEEVGFLKSKRWSELNLKESFNEIFGPLDLGGRREHSCRLCGCINKNLKEGMCDLCISFKDFSMEMKKANFYCEKIIPKADISLHNNVKDIFHELGFEIKFSDKPLKGFKNYIINSCDFEAYDGFIFKSVKLSDESLDYMVQKQKGNNKVGVIKLDIDNLGKLFINGLGNEGSISKIISLSRNISMFFEGYIENILYKSKRLDKLKEYLKTSDWEKRVTIIFSGGDDTFIIGRYEEILEFALLIREVFEEFVGGEQLTFSAGIGIFDYNYPVINIAEDTERCLELAKNHIEGNEIYAKKNKVCIMGQVFTWNEFLEIIKLKNLIEEIYLLSSKKSIFEKINKSTLGFKAVVEGGKRLNYIKLHRLAYYLRDLNNASNKNLKNKVEELIEFYEELCLKAFMGNNKKNYNINNIMIIPVASKLAQYNYRIIN
>CP014174.1|AUN22009.1|2295491_2295986_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPMKHIMSYPTEIRKRVESLPQYKDAIQKKEKKHLTVKIIAVFMFAIIFAVVAYFSGAKSFSKAYIHVFTLFFVVNIYDMIVLDIGLFCHSKKTRIPGTEDMDKEYRNPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>CP014174.1|AUN22010.1|2296028_2296643_-|galactoside-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADVHIESPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGIGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAIGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>CP014174.1|AUN22011.1|2296966_2297320_+|peptidase-M24
MHLFINKNKLSDEIKSSLKKNAALFIHPYNKIYKEVKKFTNSDVVLVHPDRINYELYNNIDKEVITEISSSNKLDAFPAEQGRFICPSFEPISSFGEHVTIVTCIFLMENSFMVVTV

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Crispr_ID: CP014174_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP014174_6

2287380-2287475

TypeIII

III-B

Consensus_repeat	Method
ATTTAAATACATCTCATGTTAATGTTCAAT	CRISPRCasFinder

1 spacers

csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

The CRISPR arrays of CP014174_6

>merge|CP014174|6|2287380-2287475|CRISPRCasFinder
GCTTAAATACATCCTATGTTAATATTCAATCAAAGAATATGTAAGCATTTAAGGAAGTTAAGAAAAATTTAAATACATCCCATATTAAGGTTCAAC

>CP014174|6|6|2287380-2287475|CRISPRCasFinder
GCTTAAATACATCCTATGTTAATATTCAAT	CAAAGAATATGTAAGCATTTAAGGAAGTTAAGAAAA
ATTTAAATACATCCCATATTAAGGTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP014174.1\|AUN22001.1\|2285734_2286223_+\|50S-ribosomal-protein-L7ae	unknown	unknown	gnl\|CDD\|227595
CP014174.1\|AUN22002.1\|2287502_2288192_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
CP014174.1\|AUN22007.1\|2292592_2292991_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
CP014174.1\|AUN22004.1\|2289692_2290784_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863
CP014174.1\|AUN22010.1\|2296028_2296643_-\|galactoside-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
CP014174.1\|AUN21997.1\|2281536_2282253_-\|transaldolase	unknown	unknown	gnl\|CDD\|183481
CP014174.1\|AUN21994.1\|2279385_2280750_-\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|236502
CP014174.1\|AUN21995.1\|2280762_2281047_-\|PTS-maltose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|99905
CP014174.1\|AUN21992.1\|2276401_2276755_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379915
CP014174.1\|AUN22000.1\|2284313_2284907_-\|acyl-phosphate-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|172889
CP014174.1\|AUN21998.1\|2282488_2282890_-\|hypothetical-protein	unknown	unknown	unknown
CP014174.1\|AUN21996.1\|2281075_2281513_-\|PTS-maltose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|238129
CP014174.1\|AUN21993.1\|2277080_2279174_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|226234
CP014174.1\|AUN22006.1\|2291830_2292580_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
CP014174.1\|AUN22011.1\|2296966_2297320_+\|peptidase-M24	unknown	unknown	gnl\|CDD\|379790
CP014174.1\|AUN22009.1\|2295491_2295986_-\|hypothetical-protein	unknown	unknown	unknown
CP014174.1\|AUN22005.1\|2290773_2291829_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|380071
CP014174.1\|AUN22008.1\|2293009_2295160_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
CP014174.1\|AUN21999.1\|2283227_2283974_-\|transpeptidase-transglycosylase	unknown	unknown	gnl\|CDD\|236545
CP014174.1\|AUN22003.1\|2288208_2289690_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|187878

Protein	Function_ID	Function_description	E-value
CP014174.1\|AUN22001.1\|2285734_2286223_+\|50S-ribosomal-protein-L7ae	gnl\|CDD\|227595	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis].	0.00379916
CP014174.1\|AUN21997.1\|2281536_2282253_-\|transaldolase	gnl\|CDD\|183481	PRK12376, PRK12376, putative translaldolase; Provisional.	3.52947e-157
CP014174.1\|AUN22007.1\|2292592_2292991_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	5.57512e-09
CP014174.1\|AUN22004.1\|2289692_2290784_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	3.88011e-18
CP014174.1\|AUN22010.1\|2296028_2296643_-\|galactoside-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	2.33547e-98
CP014174.1\|AUN22002.1\|2287502_2288192_-\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	0.00384193
CP014174.1\|AUN21994.1\|2279385_2280750_-\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
CP014174.1\|AUN21995.1\|2280762_2281047_-\|PTS-maltose-transporter-subunit-IIBC	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	2.52704e-28
CP014174.1\|AUN21992.1\|2276401_2276755_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379915	pfam17032, zinc_ribbon_15, zinc-ribbon family. This zinc-ribbon region is found on a set of largely microsporidia-specific proteins.	0.000183435
CP014174.1\|AUN22000.1\|2284313_2284907_-\|acyl-phosphate-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|172889	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase.	4.80542e-92
CP014174.1\|AUN21996.1\|2281075_2281513_-\|PTS-maltose-transporter-subunit-IIBC	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	9.05568e-38
CP014174.1\|AUN21993.1\|2277080_2279174_-\|sugar-transporter	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.72803e-58
CP014174.1\|AUN22006.1\|2291830_2292580_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.68348e-77
CP014174.1\|AUN22011.1\|2296966_2297320_+\|peptidase-M24	gnl\|CDD\|379790	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain.	2.05273e-11
CP014174.1\|AUN22005.1\|2290773_2291829_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|380071	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain. Clustered, regularly interspaced, short palindromic repeat (CRISPR) loci play a pivotal role in the prokaryotic host defense system against invading genetic materials. The CRISPR loci are transcribed to produce CRISPR RNAs (crRNAs), which form interference complexes with CRISPR-associated (Cas) proteins to target the invading nucleic acid for degradation. The interference complex of the type III-A CRISPR-Cas system is composed of five Cas proteins (Csm1-Csm5) and a crRNA, and targets invading DNA. This entry represents the C-terminal domain found in Csm4. Csm4 structurally resembles Cmr3, a component of the type III-B CRISPR-Cas interference complex. Studies indicate that Csm3-Csm4 complex binds single-stranded RNA in a non-sequence-specific manner. Structural analysis show, Csm3 and Csm4 have one and two ferredoxin-like folds (also known as an RRM-like fold), respectively. The long beta-hairpin inserted into the C-terminal ferredoxin-like fold of Csm4, is well-conserved in the Cmr3 structure. The corresponding beta-hairpin of Cmr3 binds the D1 domain of Cmr2, as observed in the Cmr2-Cmr3 complex structure. Furthermore, it is suggested that the hairpin of Csm4 is responsible for the interaction with Csm1 (ortholog of Cmr2).	3.43304e-17
CP014174.1\|AUN22008.1\|2293009_2295160_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	4.54862e-98
CP014174.1\|AUN21999.1\|2283227_2283974_-\|transpeptidase-transglycosylase	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	1.38627e-11
CP014174.1\|AUN22003.1\|2288208_2289690_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	3.51889e-09

>CP014174.1|AUN22001.1|2285734_2286223_+|50S-ribosomal-protein-L7ae
MISKKIIAFIAMTIMMISLLIGCSNNTMDKVYNDNIKIASVYDTFGLDKSDEIIESGIYKGKLKLSGSGTIWTYESSSDFDLKVPYILSVKSGKAKIVLISPDNTVVNLVENTDKATMKGTTSLTLPIKKGNNRIKLVGYKKADIDIELHIEKGTFEKISFN
>CP014174.1|AUN22000.1|2284313_2284907_-|acyl-phosphate-glycerol-3-phosphate-acyltransferase
MIIIITSIISFLLGSIPTGYFITKKTCGIDIRTKGSGNIGSTNVKRIVGTKISIITQTIDVLKGIIPVVLGISLSKIVKLPVSIDTYLSIIAIAAILGHDYTPFLKFKGGKGVNTTLGVFIFIAPIPTLTGLAVYFILGLFIRIVSIRSISIGITIPIMCIITKLPIQIIISTTIACILMIIRHKDNLVRLIRGEEK
>CP014174.1|AUN21999.1|2283227_2283974_-|transpeptidase-transglycosylase
MDKFRNMKKSHIALLVIMYMVLMGSLPRFTGWATIFSAIAVGGYFLKNKKDLKELTRKKKNFIFAGIIILAIIGSFNVAVGNNIQNEKLLAEKSKQEQQIKKEQEEKKLAEEQKRIQEEEARKKAEEEKRKQEEEAKKKTEEEAKKKALEEQKKQEELKRKQEEENKVKAENEQAQAAFAQSTGKGDSNSQSNESQNADDNQNYTVYKTRTGSKYHSSGCRYLKKSCYETTVSQARNEGLTPCRVCNP
>CP014174.1|AUN21998.1|2282488_2282890_-|hypothetical-protein
MNILISTCNIGIPVLMIFIGILYKCNLYKKIDKTLDLIVPIAMFFTGFSERDREHLYKNTNKLALVNRKCSLIWSISGVCTLLLTIISLILNKSDIYNTSVILLEPEFLILVIVFITVEYVLKRNFYKKIQQS
>CP014174.1|AUN21997.1|2281536_2282253_-|transaldolase
MKYNDLKIKIFADGADLNGMLDAYNKGIVKGFTTNPSLMKKAGITDYKEFAKEVLAKIKDMPVSFEVFSDDLETMEKEAEVLGNLGENVYIKIPVTNTKGESTAPLIKKLSEKGYHLNVTAIFTIDQVKEVVGALKSGVDSIVSVFAGRIADTGEDPVKIMKEASKICKTKEGVELLWASCREFYSIVEADKCGCEIITVTNDVLKKMPNMGKDLKEYSIETVRGFYKDASSLGFSIL
>CP014174.1|AUN21996.1|2281075_2281513_-|PTS-maltose-transporter-subunit-IIBC
MLKNYINDQVVEVNVEVKNWEEAVRLGGKLLEEDGAVEHSYIDAMVDTVKNMGPYIVIAPGIAMPHARPEAGAKNIRIGLLKLKNPVNFGNEEHDPVDMVIFLCAVDNKAHIEVLGELVQLIEDDDFLKIVRNASTKKEILDYIK
>CP014174.1|AUN21995.1|2280762_2281047_-|PTS-maltose-transporter-subunit-IIBC
MNILTVCGNGIGSSLMLAMKIEEICKENGIAANVESTDFNSAQGKKADLIVTVKELAEQFEGRDVAVVRSYINKKKITEDVLEIIKQKDEELKK
>CP014174.1|AUN21994.1|2279385_2280750_-|PTS-ascorbate-transporter-subunit-IIC
MLGLLQFLRDVLKQPALLMGIMALVGLVALKKPGHKVLTGTLKPILGYLMLGAGADFIVANLEPLGGMIQTGFNITGVVPNNEAIVAVAQKVLGVETMSILVVGLLINLVIARFTKYKYVFLTGHHSFFMACLLSAVLGTSGMKGTELILFGGFLLGAWSAISPAIGQKYTLKVTDGDEIAMGHFGSLAYYVSAWVGSKVGKPEESTENIEIPEKWGFLRDTTISTAITMMVFYIVAAVAAGPEYVSKLSDGMSPILFAIMSSLKFAVGVTIVYNGVRMILGDLIPAFQGIATKIIPDAIPAVDCAVFFPYAPTAVIIGFVSSFIGGIIGMVLLGVAGGVLIIPGLVPHFFCGSTAGIFGNATGGKKGAVIGSFVNGLLITFAPALLLPVLSTLGFKNTTFGDFDFGVLGIIIGKTSNLAGKTGIIIIAMLMLVALIVPNFIKTKSKALNNIEE
>CP014174.1|AUN21993.1|2277080_2279174_-|sugar-transporter
MLNKRCSNILQMIVNNEKPITIKEISKKVNKSPRTVRYDLDKIDDYLTEIEFPKLERKSNLGISLDLKDEEIKKLFKIIGKINNYDYVLSQKERVFYIIYELLNKSEFATINMLSDRMMVSRSTIINDLIEVKKWLSENKITLESSKGQGIKILGRERDLRRAAVKLFFQSMDSINFFNVTTLKLFNDIDIDFIRNTIKIAEEQMETSFSDDAFNNLVIHIAIAIKRIELSKDIIMDSEELKNLRKTAEYVIASGIAKMLEDRFKISIPEDEIGYITIHILGSNTSTLENIVKDDWIYLHLIVFKLIENVENITGINFSKDNKLFDSLAQHIRPAIYRLKHDIKVKNPLIEEIKEKYSYIFESIEEGVKFIEEDIGDSVNQEEIGYLTLHFMASIERSKNKKHRKPNVLIVCATGIGTSKFISNKLKSIFDINIIDTISSHTMEKILKYNKNIDLIVTTIPLKVKGIKCIEVNTFLTEKNISELGLYFAKFIRNNSEECNGSCKYEERDKVQEILNIVKENCTIHDYYKLRNKLALYLNIKDPTLTEDHKPSLKELLKPDFIKLNEEAENWEDAVRKSGEILMNNGCVKESYIDAMVNTVKNMGPYIVIAPGIAMPHAAPEDGVLKTGISMLTLKDPISFGNSEHDPVSVIISICSIDKVNHMKALKELMSIMDQEDFISKVKNIKASSEIDSILYS
>CP014174.1|AUN21992.1|2276401_2276755_-|zinc-ribbon-domain-containing-protein
MIIWGWGKVTKKIIGAVFERTCNYCNTDEVWNLCVVRTWFTLFFIPIIPYKKQYCIACPKCWSYIELTQEEFEKIKIDITSSSNNINEKVVTDNIKYAGKTETQINYLKQMEEYSNK
>CP014174.1|AUN22002.1|2287502_2288192_-|hypothetical-protein
MHYYQLKIRVKLENNINYIQAPYLIGTFINNCMLKNDMLKNIHKKKIYKYVYDSFFPIEKDGIYKREKYYNIQLRTINLNLINKLAIALYNHKFNGIKTVNIDLEVMEPTKINQLYTLKPSIVTITGQPWIKNKHSIDVLIGNLNANLEKKYKQIFNEELENNKSFIKKIKVVNNIPIKYEYKNIILLGNKFEIIVNEDEVSQRKATIALGMGLGEKGSSLGAGFCIYR
>CP014174.1|AUN22003.1|2288208_2289690_-|hypothetical-protein
MDNVLIINLGNSDIEKEGNKIEFGEFREKTKKIYEQLEGANKEEKQEIFKYLDFPIIKAIIDKVDGELKNEKLDKVILAYTNQKFNNNKDTVYLYEILKQKKHLVNNLETDNQDIWEKRLKETNFKQSYNIDFDPSDIDRMYNFYAEEINELNNKKIKKLFFSITGGASAMNFALLINAIEKFSGQLIPCYLSRGKKVAYKVNIAKNLRKQILKRDIKILINNKDYFAAIKMLENLEDGIVDDMSKLELKNIILALKYAEARIQFNFDKCKEYGEKCLDNTAEYREEFSQAVKDILIEKDDYINRLVELKNNAIYLYKKGSYTDFLGRVYRFQEAVYEHILGQYDLIIEKSNGVKINKEILKSRYSDKKEILDNIKIAGNKLEYEKNLTVDAMSKIISTLIDNDDVRNIVNRMEEIKDVKQLRNKSILAHGFEGISKEKIQGKLNCEEKDISKLLEEVMCKILVLFKIGTIEDMFYCENSRYDCILIEMIEKL
>CP014174.1|AUN22004.1|2289692_2290784_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MNYDKIILNLKGQVLTPVHIGCGKKYSPYLDIIKNENKITVLDEEKIIEKLVLNDEIFEEYINILKNKSPNAIEKYNIINILKNNKIEIGEVKKYDLICGNSFNNLIDVNQSIKTKGIPYIPGSSIKGSIRTALIYNKLLKNGIDFGKIKEISNLKNKYYCYLGQDIFRQNDKLIYDDMMKNLLVRDTDIISNNKVKVYLCRAVNLYESIKNGNISTSVKSLNECIEEYTDFTFSIIIKNSLISKEELYNNINSFYEKILLKEIQEIEKLKLNIINSQYKLLLNEINEFRKYNNGFILRIGGMKGIFSNTIDSILSKKELEDIRNAHKNKRKKTGEFPTTKWCVMDEYENIKTTLGWIKIMEE
>CP014174.1|AUN22005.1|2290773_2291829_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKKVILKIDNETKFHIGNGQEILEYIPSDKLYSAIINSLALTYSKYELNKLIEIINEKLQISSAFMGIKIKNKNKGIEKSIDFLPRPYMYIGNNNIISTQLLNRKKFKKINYVSNNVFLDFNKHYDSKKNFINYDFQQGYIIGEKYYVTDREINFLSEDEKKYLEKYKPIINESVQRNYINRFSKESIGTYYDNFKVIVQEKYKDMQLIPYFYFYIKGDLEIDKIMYAIIEGGIGGKRSLGAGTIKDISIEECDDFKENGERFINISMIYPDKQELNYIESYALENRNGYIYSQGPTDLKKPWIRMIKEGGVFTKRIKGNINDINVKDIDYPIYTYGKAFFITLGGNLDEL
>CP014174.1|AUN22006.1|2291830_2292580_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MNLLMGKIFIDGDIILKTGLRIGGGNNSIEIGGIDNNVIKNHRGEPYIPGSSLKGKLRSLLEISTNRLKDGRPCNCGECSICSIFGVGANENKQNLPTRIIVRDAFLNEDIKKQMYEKQGQFKRLELNYTESKYENTIDRLNSKATPRLIERVPEGASFRLQIIYSVFNNKDIDNFNDLIKGMKLLEDDYLGSNGSRGYGQVEFDNLNIKIKVIKDYKTKEVLNKSSLTDIDSVCLKEKLNELIEIKGV
>CP014174.1|AUN22007.1|2292592_2292991_-|type-III-A-CRISPR-associated-protein-Csm2
MEKDYKTDKFREYEEYFKKNVLTLDKINYDQFIEKSKDYSRLLKNNGLTTSMIRKIYNEILKANEAIDLKRLRPILAYTYGRNRVKGLQSLFYTLDDLLKRLNLKTNYLEIENVKEFLEVIIAYMKFYGDRY
>CP014174.1|AUN22008.1|2293009_2295160_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MHICYKSLLYSFLRYVESIDKAMYKENAFKLKDKLLNPILQESYELVTKNIKKKKCKDGTFRLMNIFSNINDSKRKKFNLLKEIDINRYDNILKENGEEIDKAYCINYVKSIIKKLLQNDNEKIYFLMSKYCSNVPFINSKNCDISLFDIAKVTAAIATCKEKNKEEYILIKGDFSGIQSFIFKTSSDGALKTLKGRSVYLTLLQEICAKYIVKELGLSLCNILYSGGGNFYILASKSDENKIKLLRKQLSKLILKAYNGEIYLALGYLSFKEEDFKNFNILWKNIGEEVGFLKSKRWSELNLKESFNEIFGPLDLGGRREHSCRLCGCINKNLKEGMCDLCISFKDFSMEMKKANFYCEKIIPKADISLHNNVKDIFHELGFEIKFSDKPLKGFKNYIINSCDFEAYDGFIFKSVKLSDESLDYMVQKQKGNNKVGVIKLDIDNLGKLFINGLGNEGSISKIISLSRNISMFFEGYIENILYKSKRLDKLKEYLKTSDWEKRVTIIFSGGDDTFIIGRYEEILEFALLIREVFEEFVGGEQLTFSAGIGIFDYNYPVINIAEDTERCLELAKNHIEGNEIYAKKNKVCIMGQVFTWNEFLEIIKLKNLIEEIYLLSSKKSIFEKINKSTLGFKAVVEGGKRLNYIKLHRLAYYLRDLNNASNKNLKNKVEELIEFYEELCLKAFMGNNKKNYNINNIMIIPVASKLAQYNYRIIN
>CP014174.1|AUN22009.1|2295491_2295986_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPMKHIMSYPTEIRKRVESLPQYKDAIQKKEKKHLTVKIIAVFMFAIIFAVVAYFSGAKSFSKAYIHVFTLFFVVNIYDMIVLDIGLFCHSKKTRIPGTEDMDKEYRNPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>CP014174.1|AUN22010.1|2296028_2296643_-|galactoside-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADVHIESPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGIGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAIGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>CP014174.1|AUN22011.1|2296966_2297320_+|peptidase-M24
MHLFINKNKLSDEIKSSLKKNAALFIHPYNKIYKEVKKFTNSDVVLVHPDRINYELYNNIDKEVITEISSSNKLDAFPAEQGRFICPSFEPISSFGEHVTIVTCIFLMENSFMVVTV

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Crispr_ID: CP014174_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP014174_5

2286968-2287127

TypeIII

III-B

Consensus_repeat	Method
ATTTAAATACATCTCATGTTAATGTTCAAT	CRISPRCasFinder

2 spacers

csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

The CRISPR arrays of CP014174_5

>merge|CP014174|5|2286968-2287127|CRISPRCasFinder
GCTTAAATACATCTTATGTTACTGTTCAACTAATACAAAAATTAGATCCAGGAATGAAATTATTAATTTAAATACATCTTATGTTACTGTTCGACATACTGAAAAGGGTAAGAAAATTGATTATATGCTATTTAAATACATCTTATGTTACTGTTCGACC

>CP014174|5|5|2286968-2287127|CRISPRCasFinder
GCTTAAATACATCTTATGTTACTGTTCAAC	TAATACAAAAATTAGATCCAGGAATGAAATTATTA
ATTTAAATACATCTTATGTTACTGTTCGAC	ATACTGAAAAGGGTAAGAAAATTGATTATATGCT
ATTTAAATACATCTTATGTTACTGTTCGACC

Protein	Signature genes	Signature genes Name	Protein_function
CP014174.1\|AUN22001.1\|2285734_2286223_+\|50S-ribosomal-protein-L7ae	unknown	unknown	gnl\|CDD\|227595
CP014174.1\|AUN22002.1\|2287502_2288192_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
CP014174.1\|AUN22007.1\|2292592_2292991_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
CP014174.1\|AUN22004.1\|2289692_2290784_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|273863
CP014174.1\|AUN22010.1\|2296028_2296643_-\|galactoside-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
CP014174.1\|AUN21997.1\|2281536_2282253_-\|transaldolase	unknown	unknown	gnl\|CDD\|183481
CP014174.1\|AUN21994.1\|2279385_2280750_-\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|236502
CP014174.1\|AUN21995.1\|2280762_2281047_-\|PTS-maltose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|99905
CP014174.1\|AUN21992.1\|2276401_2276755_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379915
CP014174.1\|AUN22000.1\|2284313_2284907_-\|acyl-phosphate-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|172889
CP014174.1\|AUN21998.1\|2282488_2282890_-\|hypothetical-protein	unknown	unknown	unknown
CP014174.1\|AUN21996.1\|2281075_2281513_-\|PTS-maltose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|238129
CP014174.1\|AUN21993.1\|2277080_2279174_-\|sugar-transporter	unknown	unknown	gnl\|CDD\|226234
CP014174.1\|AUN22006.1\|2291830_2292580_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
CP014174.1\|AUN22011.1\|2296966_2297320_+\|peptidase-M24	unknown	unknown	gnl\|CDD\|379790
CP014174.1\|AUN22009.1\|2295491_2295986_-\|hypothetical-protein	unknown	unknown	unknown
CP014174.1\|AUN22005.1\|2290773_2291829_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|380071
CP014174.1\|AUN22008.1\|2293009_2295160_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
CP014174.1\|AUN21999.1\|2283227_2283974_-\|transpeptidase-transglycosylase	unknown	unknown	gnl\|CDD\|236545
CP014174.1\|AUN22003.1\|2288208_2289690_-\|hypothetical-protein	csx1	mkCas0109_csx1_CAS-III	gnl\|CDD\|187878

Protein	Function_ID	Function_description	E-value
CP014174.1\|AUN22001.1\|2285734_2286223_+\|50S-ribosomal-protein-L7ae	gnl\|CDD\|227595	COG5270, COG5270, PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis].	0.00379916
CP014174.1\|AUN21997.1\|2281536_2282253_-\|transaldolase	gnl\|CDD\|183481	PRK12376, PRK12376, putative translaldolase; Provisional.	3.52947e-157
CP014174.1\|AUN22007.1\|2292592_2292991_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	5.57512e-09
CP014174.1\|AUN22004.1\|2289692_2290784_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	3.88011e-18
CP014174.1\|AUN22010.1\|2296028_2296643_-\|galactoside-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	2.33547e-98
CP014174.1\|AUN22002.1\|2287502_2288192_-\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	0.00384193
CP014174.1\|AUN21994.1\|2279385_2280750_-\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
CP014174.1\|AUN21995.1\|2280762_2281047_-\|PTS-maltose-transporter-subunit-IIBC	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	2.52704e-28
CP014174.1\|AUN21992.1\|2276401_2276755_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379915	pfam17032, zinc_ribbon_15, zinc-ribbon family. This zinc-ribbon region is found on a set of largely microsporidia-specific proteins.	0.000183435
CP014174.1\|AUN22000.1\|2284313_2284907_-\|acyl-phosphate-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|172889	PRK14413, PRK14413, glycerol-3-phosphate acyltransferase.	4.80542e-92
CP014174.1\|AUN21996.1\|2281075_2281513_-\|PTS-maltose-transporter-subunit-IIBC	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	9.05568e-38
CP014174.1\|AUN21993.1\|2277080_2279174_-\|sugar-transporter	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.72803e-58
CP014174.1\|AUN22006.1\|2291830_2292580_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.68348e-77
CP014174.1\|AUN22011.1\|2296966_2297320_+\|peptidase-M24	gnl\|CDD\|379790	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain.	2.05273e-11
CP014174.1\|AUN22005.1\|2290773_2291829_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|380071	pfam17953, Csm4_C, CRISPR Csm4 C-terminal domain. Clustered, regularly interspaced, short palindromic repeat (CRISPR) loci play a pivotal role in the prokaryotic host defense system against invading genetic materials. The CRISPR loci are transcribed to produce CRISPR RNAs (crRNAs), which form interference complexes with CRISPR-associated (Cas) proteins to target the invading nucleic acid for degradation. The interference complex of the type III-A CRISPR-Cas system is composed of five Cas proteins (Csm1-Csm5) and a crRNA, and targets invading DNA. This entry represents the C-terminal domain found in Csm4. Csm4 structurally resembles Cmr3, a component of the type III-B CRISPR-Cas interference complex. Studies indicate that Csm3-Csm4 complex binds single-stranded RNA in a non-sequence-specific manner. Structural analysis show, Csm3 and Csm4 have one and two ferredoxin-like folds (also known as an RRM-like fold), respectively. The long beta-hairpin inserted into the C-terminal ferredoxin-like fold of Csm4, is well-conserved in the Cmr3 structure. The corresponding beta-hairpin of Cmr3 binds the D1 domain of Cmr2, as observed in the Cmr2-Cmr3 complex structure. Furthermore, it is suggested that the hairpin of Csm4 is responsible for the interaction with Csm1 (ortholog of Cmr2).	3.43304e-17
CP014174.1\|AUN22008.1\|2293009_2295160_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	4.54862e-98
CP014174.1\|AUN21999.1\|2283227_2283974_-\|transpeptidase-transglycosylase	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	1.38627e-11
CP014174.1\|AUN22003.1\|2288208_2289690_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	3.51889e-09

>CP014174.1|AUN22001.1|2285734_2286223_+|50S-ribosomal-protein-L7ae
MISKKIIAFIAMTIMMISLLIGCSNNTMDKVYNDNIKIASVYDTFGLDKSDEIIESGIYKGKLKLSGSGTIWTYESSSDFDLKVPYILSVKSGKAKIVLISPDNTVVNLVENTDKATMKGTTSLTLPIKKGNNRIKLVGYKKADIDIELHIEKGTFEKISFN
>CP014174.1|AUN22000.1|2284313_2284907_-|acyl-phosphate-glycerol-3-phosphate-acyltransferase
MIIIITSIISFLLGSIPTGYFITKKTCGIDIRTKGSGNIGSTNVKRIVGTKISIITQTIDVLKGIIPVVLGISLSKIVKLPVSIDTYLSIIAIAAILGHDYTPFLKFKGGKGVNTTLGVFIFIAPIPTLTGLAVYFILGLFIRIVSIRSISIGITIPIMCIITKLPIQIIISTTIACILMIIRHKDNLVRLIRGEEK
>CP014174.1|AUN21999.1|2283227_2283974_-|transpeptidase-transglycosylase
MDKFRNMKKSHIALLVIMYMVLMGSLPRFTGWATIFSAIAVGGYFLKNKKDLKELTRKKKNFIFAGIIILAIIGSFNVAVGNNIQNEKLLAEKSKQEQQIKKEQEEKKLAEEQKRIQEEEARKKAEEEKRKQEEEAKKKTEEEAKKKALEEQKKQEELKRKQEEENKVKAENEQAQAAFAQSTGKGDSNSQSNESQNADDNQNYTVYKTRTGSKYHSSGCRYLKKSCYETTVSQARNEGLTPCRVCNP
>CP014174.1|AUN21998.1|2282488_2282890_-|hypothetical-protein
MNILISTCNIGIPVLMIFIGILYKCNLYKKIDKTLDLIVPIAMFFTGFSERDREHLYKNTNKLALVNRKCSLIWSISGVCTLLLTIISLILNKSDIYNTSVILLEPEFLILVIVFITVEYVLKRNFYKKIQQS
>CP014174.1|AUN21997.1|2281536_2282253_-|transaldolase
MKYNDLKIKIFADGADLNGMLDAYNKGIVKGFTTNPSLMKKAGITDYKEFAKEVLAKIKDMPVSFEVFSDDLETMEKEAEVLGNLGENVYIKIPVTNTKGESTAPLIKKLSEKGYHLNVTAIFTIDQVKEVVGALKSGVDSIVSVFAGRIADTGEDPVKIMKEASKICKTKEGVELLWASCREFYSIVEADKCGCEIITVTNDVLKKMPNMGKDLKEYSIETVRGFYKDASSLGFSIL
>CP014174.1|AUN21996.1|2281075_2281513_-|PTS-maltose-transporter-subunit-IIBC
MLKNYINDQVVEVNVEVKNWEEAVRLGGKLLEEDGAVEHSYIDAMVDTVKNMGPYIVIAPGIAMPHARPEAGAKNIRIGLLKLKNPVNFGNEEHDPVDMVIFLCAVDNKAHIEVLGELVQLIEDDDFLKIVRNASTKKEILDYIK
>CP014174.1|AUN21995.1|2280762_2281047_-|PTS-maltose-transporter-subunit-IIBC
MNILTVCGNGIGSSLMLAMKIEEICKENGIAANVESTDFNSAQGKKADLIVTVKELAEQFEGRDVAVVRSYINKKKITEDVLEIIKQKDEELKK
>CP014174.1|AUN21994.1|2279385_2280750_-|PTS-ascorbate-transporter-subunit-IIC
MLGLLQFLRDVLKQPALLMGIMALVGLVALKKPGHKVLTGTLKPILGYLMLGAGADFIVANLEPLGGMIQTGFNITGVVPNNEAIVAVAQKVLGVETMSILVVGLLINLVIARFTKYKYVFLTGHHSFFMACLLSAVLGTSGMKGTELILFGGFLLGAWSAISPAIGQKYTLKVTDGDEIAMGHFGSLAYYVSAWVGSKVGKPEESTENIEIPEKWGFLRDTTISTAITMMVFYIVAAVAAGPEYVSKLSDGMSPILFAIMSSLKFAVGVTIVYNGVRMILGDLIPAFQGIATKIIPDAIPAVDCAVFFPYAPTAVIIGFVSSFIGGIIGMVLLGVAGGVLIIPGLVPHFFCGSTAGIFGNATGGKKGAVIGSFVNGLLITFAPALLLPVLSTLGFKNTTFGDFDFGVLGIIIGKTSNLAGKTGIIIIAMLMLVALIVPNFIKTKSKALNNIEE
>CP014174.1|AUN21993.1|2277080_2279174_-|sugar-transporter
MLNKRCSNILQMIVNNEKPITIKEISKKVNKSPRTVRYDLDKIDDYLTEIEFPKLERKSNLGISLDLKDEEIKKLFKIIGKINNYDYVLSQKERVFYIIYELLNKSEFATINMLSDRMMVSRSTIINDLIEVKKWLSENKITLESSKGQGIKILGRERDLRRAAVKLFFQSMDSINFFNVTTLKLFNDIDIDFIRNTIKIAEEQMETSFSDDAFNNLVIHIAIAIKRIELSKDIIMDSEELKNLRKTAEYVIASGIAKMLEDRFKISIPEDEIGYITIHILGSNTSTLENIVKDDWIYLHLIVFKLIENVENITGINFSKDNKLFDSLAQHIRPAIYRLKHDIKVKNPLIEEIKEKYSYIFESIEEGVKFIEEDIGDSVNQEEIGYLTLHFMASIERSKNKKHRKPNVLIVCATGIGTSKFISNKLKSIFDINIIDTISSHTMEKILKYNKNIDLIVTTIPLKVKGIKCIEVNTFLTEKNISELGLYFAKFIRNNSEECNGSCKYEERDKVQEILNIVKENCTIHDYYKLRNKLALYLNIKDPTLTEDHKPSLKELLKPDFIKLNEEAENWEDAVRKSGEILMNNGCVKESYIDAMVNTVKNMGPYIVIAPGIAMPHAAPEDGVLKTGISMLTLKDPISFGNSEHDPVSVIISICSIDKVNHMKALKELMSIMDQEDFISKVKNIKASSEIDSILYS
>CP014174.1|AUN21992.1|2276401_2276755_-|zinc-ribbon-domain-containing-protein
MIIWGWGKVTKKIIGAVFERTCNYCNTDEVWNLCVVRTWFTLFFIPIIPYKKQYCIACPKCWSYIELTQEEFEKIKIDITSSSNNINEKVVTDNIKYAGKTETQINYLKQMEEYSNK
>CP014174.1|AUN22002.1|2287502_2288192_-|hypothetical-protein
MHYYQLKIRVKLENNINYIQAPYLIGTFINNCMLKNDMLKNIHKKKIYKYVYDSFFPIEKDGIYKREKYYNIQLRTINLNLINKLAIALYNHKFNGIKTVNIDLEVMEPTKINQLYTLKPSIVTITGQPWIKNKHSIDVLIGNLNANLEKKYKQIFNEELENNKSFIKKIKVVNNIPIKYEYKNIILLGNKFEIIVNEDEVSQRKATIALGMGLGEKGSSLGAGFCIYR
>CP014174.1|AUN22003.1|2288208_2289690_-|hypothetical-protein
MDNVLIINLGNSDIEKEGNKIEFGEFREKTKKIYEQLEGANKEEKQEIFKYLDFPIIKAIIDKVDGELKNEKLDKVILAYTNQKFNNNKDTVYLYEILKQKKHLVNNLETDNQDIWEKRLKETNFKQSYNIDFDPSDIDRMYNFYAEEINELNNKKIKKLFFSITGGASAMNFALLINAIEKFSGQLIPCYLSRGKKVAYKVNIAKNLRKQILKRDIKILINNKDYFAAIKMLENLEDGIVDDMSKLELKNIILALKYAEARIQFNFDKCKEYGEKCLDNTAEYREEFSQAVKDILIEKDDYINRLVELKNNAIYLYKKGSYTDFLGRVYRFQEAVYEHILGQYDLIIEKSNGVKINKEILKSRYSDKKEILDNIKIAGNKLEYEKNLTVDAMSKIISTLIDNDDVRNIVNRMEEIKDVKQLRNKSILAHGFEGISKEKIQGKLNCEEKDISKLLEEVMCKILVLFKIGTIEDMFYCENSRYDCILIEMIEKL
>CP014174.1|AUN22004.1|2289692_2290784_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MNYDKIILNLKGQVLTPVHIGCGKKYSPYLDIIKNENKITVLDEEKIIEKLVLNDEIFEEYINILKNKSPNAIEKYNIINILKNNKIEIGEVKKYDLICGNSFNNLIDVNQSIKTKGIPYIPGSSIKGSIRTALIYNKLLKNGIDFGKIKEISNLKNKYYCYLGQDIFRQNDKLIYDDMMKNLLVRDTDIISNNKVKVYLCRAVNLYESIKNGNISTSVKSLNECIEEYTDFTFSIIIKNSLISKEELYNNINSFYEKILLKEIQEIEKLKLNIINSQYKLLLNEINEFRKYNNGFILRIGGMKGIFSNTIDSILSKKELEDIRNAHKNKRKKTGEFPTTKWCVMDEYENIKTTLGWIKIMEE
>CP014174.1|AUN22005.1|2290773_2291829_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKKVILKIDNETKFHIGNGQEILEYIPSDKLYSAIINSLALTYSKYELNKLIEIINEKLQISSAFMGIKIKNKNKGIEKSIDFLPRPYMYIGNNNIISTQLLNRKKFKKINYVSNNVFLDFNKHYDSKKNFINYDFQQGYIIGEKYYVTDREINFLSEDEKKYLEKYKPIINESVQRNYINRFSKESIGTYYDNFKVIVQEKYKDMQLIPYFYFYIKGDLEIDKIMYAIIEGGIGGKRSLGAGTIKDISIEECDDFKENGERFINISMIYPDKQELNYIESYALENRNGYIYSQGPTDLKKPWIRMIKEGGVFTKRIKGNINDINVKDIDYPIYTYGKAFFITLGGNLDEL
>CP014174.1|AUN22006.1|2291830_2292580_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MNLLMGKIFIDGDIILKTGLRIGGGNNSIEIGGIDNNVIKNHRGEPYIPGSSLKGKLRSLLEISTNRLKDGRPCNCGECSICSIFGVGANENKQNLPTRIIVRDAFLNEDIKKQMYEKQGQFKRLELNYTESKYENTIDRLNSKATPRLIERVPEGASFRLQIIYSVFNNKDIDNFNDLIKGMKLLEDDYLGSNGSRGYGQVEFDNLNIKIKVIKDYKTKEVLNKSSLTDIDSVCLKEKLNELIEIKGV
>CP014174.1|AUN22007.1|2292592_2292991_-|type-III-A-CRISPR-associated-protein-Csm2
MEKDYKTDKFREYEEYFKKNVLTLDKINYDQFIEKSKDYSRLLKNNGLTTSMIRKIYNEILKANEAIDLKRLRPILAYTYGRNRVKGLQSLFYTLDDLLKRLNLKTNYLEIENVKEFLEVIIAYMKFYGDRY
>CP014174.1|AUN22008.1|2293009_2295160_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MHICYKSLLYSFLRYVESIDKAMYKENAFKLKDKLLNPILQESYELVTKNIKKKKCKDGTFRLMNIFSNINDSKRKKFNLLKEIDINRYDNILKENGEEIDKAYCINYVKSIIKKLLQNDNEKIYFLMSKYCSNVPFINSKNCDISLFDIAKVTAAIATCKEKNKEEYILIKGDFSGIQSFIFKTSSDGALKTLKGRSVYLTLLQEICAKYIVKELGLSLCNILYSGGGNFYILASKSDENKIKLLRKQLSKLILKAYNGEIYLALGYLSFKEEDFKNFNILWKNIGEEVGFLKSKRWSELNLKESFNEIFGPLDLGGRREHSCRLCGCINKNLKEGMCDLCISFKDFSMEMKKANFYCEKIIPKADISLHNNVKDIFHELGFEIKFSDKPLKGFKNYIINSCDFEAYDGFIFKSVKLSDESLDYMVQKQKGNNKVGVIKLDIDNLGKLFINGLGNEGSISKIISLSRNISMFFEGYIENILYKSKRLDKLKEYLKTSDWEKRVTIIFSGGDDTFIIGRYEEILEFALLIREVFEEFVGGEQLTFSAGIGIFDYNYPVINIAEDTERCLELAKNHIEGNEIYAKKNKVCIMGQVFTWNEFLEIIKLKNLIEEIYLLSSKKSIFEKINKSTLGFKAVVEGGKRLNYIKLHRLAYYLRDLNNASNKNLKNKVEELIEFYEELCLKAFMGNNKKNYNINNIMIIPVASKLAQYNYRIIN
>CP014174.1|AUN22009.1|2295491_2295986_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPMKHIMSYPTEIRKRVESLPQYKDAIQKKEKKHLTVKIIAVFMFAIIFAVVAYFSGAKSFSKAYIHVFTLFFVVNIYDMIVLDIGLFCHSKKTRIPGTEDMDKEYRNPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>CP014174.1|AUN22010.1|2296028_2296643_-|galactoside-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADVHIESPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGIGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAIGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>CP014174.1|AUN22011.1|2296966_2297320_+|peptidase-M24
MHLFINKNKLSDEIKSSLKKNAALFIHPYNKIYKEVKKFTNSDVVLVHPDRINYELYNNIDKEVITEISSSNKLDAFPAEQGRFICPSFEPISSFGEHVTIVTCIFLMENSFMVVTV

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Crispr_ID: CP014174_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP014174_7

2301817-2301911

TypeIII

III-B

Consensus_repeat	Method
TTAAATACATCTTATGTTAATGTTCAACC	CRISPRCasFinder

1 spacers

cas10,csm2gr11,csm3gr7

The CRISPR arrays of CP014174_7

>merge|CP014174|7|2301817-2301911|CRISPRCasFinder
TTAAATACATCTTATGTTAATGTTCAACCCAATTTTAAGGTGAACTTATACTTTGGACTGTATTATTTAAATACATCTCATGTTAATGTTCAACC

>CP014174|7|7|2301817-2301911|CRISPRCasFinder
TTAAATACATCTTATGTTAATGTTCAACC	CAATTTTAAGGTGAACTTATACTTTGGACTGTATTAT
TTAAATACATCTCATGTTAATGTTCAACC

Protein	Signature genes	Signature genes Name	Protein_function
CP014174.1\|AUN22024.1\|2311056_2311524_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP014174.1\|AUN22007.1\|2292592_2292991_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
CP014174.1\|AUN22013.1\|2299161_2299902_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
CP014174.1\|AUN22014.1\|2299908_2300799_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
CP014174.1\|AUN22020.1\|2306197_2306614_+\|alkylhydroperoxidase	unknown	unknown	gnl\|CDD\|225039
CP014174.1\|AUN22021.1\|2306925_2307846_-\|phenazine-biosynthesis-protein-PhzF	unknown	unknown	gnl\|CDD\|223461
CP014174.1\|AUN22022.1\|2308169_2309663_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089
CP014174.1\|AUN22015.1\|2301099_2301621_+\|DUF4825-domain-containing-protein	unknown	unknown	gnl\|CDD\|379767
CP014174.1\|AUN22017.1\|2304296_2305094_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
CP014174.1\|AUN22018.1\|2305141_2305435_-\|hypothetical-protein	unknown	unknown	unknown
CP014174.1\|AUN22016.1\|2302202_2304200_-\|2-enoate-reductase	unknown	unknown	gnl\|CDD\|239241
CP014174.1\|AUN22011.1\|2296966_2297320_+\|peptidase-M24	unknown	unknown	gnl\|CDD\|379790
CP014174.1\|AUN22019.1\|2305609_2306059_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP014174.1\|AUN22023.1\|2310521_2310977_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378897
CP014174.1\|AUN22012.1\|2297652_2299059_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340904
CP014174.1\|AUN22025.1\|2311691_2312738_-\|esterase	unknown	unknown	gnl\|CDD\|369561
CP014174.1\|AUN22008.1\|2293009_2295160_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
CP014174.1\|AUN22006.1\|2291830_2292580_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
CP014174.1\|AUN22009.1\|2295491_2295986_-\|hypothetical-protein	unknown	unknown	unknown
CP014174.1\|AUN22010.1\|2296028_2296643_-\|galactoside-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047

Protein	Function_ID	Function_description	E-value
CP014174.1\|AUN22024.1\|2311056_2311524_-\|transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	8.47285e-15
CP014174.1\|AUN22007.1\|2292592_2292991_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	5.57512e-09
CP014174.1\|AUN22013.1\|2299161_2299902_-\|SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.74376e-12
CP014174.1\|AUN22014.1\|2299908_2300799_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.49398e-30
CP014174.1\|AUN22020.1\|2306197_2306614_+\|alkylhydroperoxidase	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	1.38783e-13
CP014174.1\|AUN22021.1\|2306925_2307846_-\|phenazine-biosynthesis-protein-PhzF	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.61966e-89
CP014174.1\|AUN22022.1\|2308169_2309663_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	4.97681e-118
CP014174.1\|AUN22015.1\|2301099_2301621_+\|DUF4825-domain-containing-protein	gnl\|CDD\|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	6.12195e-25
CP014174.1\|AUN22017.1\|2304296_2305094_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.17835e-15
CP014174.1\|AUN22016.1\|2302202_2304200_-\|2-enoate-reductase	gnl\|CDD\|239241	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.	0
CP014174.1\|AUN22011.1\|2296966_2297320_+\|peptidase-M24	gnl\|CDD\|379790	pfam16189, Creatinase_N_2, Creatinase/Prolidase N-terminal domain.	2.05273e-11
CP014174.1\|AUN22019.1\|2305609_2306059_-\|transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.0619e-36
CP014174.1\|AUN22023.1\|2310521_2310977_+\|hypothetical-protein	gnl\|CDD\|378897	pfam12638, Staygreen, Staygreen protein. This family of proteins have been implicated in chlorophyll degradation. Intriguingly members of this family are also found in non-photosynthetic bacteria.	3.11653e-82
CP014174.1\|AUN22012.1\|2297652_2299059_+\|MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.15717e-120
CP014174.1\|AUN22025.1\|2311691_2312738_-\|esterase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	6.8162e-90
CP014174.1\|AUN22008.1\|2293009_2295160_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	4.54862e-98
CP014174.1\|AUN22006.1\|2291830_2292580_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	3.68348e-77
CP014174.1\|AUN22010.1\|2296028_2296643_-\|galactoside-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	2.33547e-98

>CP014174.1|AUN22015.1|2301099_2301621_+|DUF4825-domain-containing-protein
MKNKLKVLIPLIIILSLNLVGCGMNSEKKSKENIKNSSKVETYDLIKYKGTYVGDNSSVGSIIKNLPANEYSAGFILQTSKEPYEITVNYKANENLGEENYNKFWKGNKVEKLLEKNAAVLLSLIPNAEIIKFNVENIGKESYKYDRKNLEQKYGNLKNLFKDNDSLNKFLNN
>CP014174.1|AUN22014.1|2299908_2300799_-|AraC-family-transcriptional-regulator
MNYRKDIENCIDYIEEHIKEPLTLKEITQEIGYSSYHFCRVFSFLKGMPLMEYVRKRRLSLSTIDLLEGQKIIDVAFKWGFETPSSFARAFRKEFGCSPSQYIKKMKSYYKSEGILTVGNFMIDPYIIKKEAFKVAGYGIKTNVADSKYTKDVASFWSNYNGENLESKLYKILSPLKHGEVGLCIPCSDSGDITYLLGVIVEDFSKVTSDMITVEVPKAQYAVFTTNPVNTVDNKDQREFAKIIKESWKYIFDEWFKNNDYEYDEEKLDFEFYDERCHLRPDTVMDIYVPIKKLER
>CP014174.1|AUN22013.1|2299161_2299902_-|SAM-dependent-methyltransferase
MINYYGSLCTVMYELLHPHAPEDELQFYLQYAKKEIKILEPLCGSGRFLVPFLERGFNITGFDMSEEMLKELYKKAPKAKVFQSSIEEFSPKEKYDYIFITSGSFSLFLDEDIAFNVLVKMKEALAPKGKFVFAAETTANIIPDREEYLENCHVKTKEGYDIIFKSKSFYDKHKKILSTPSLYELYDGDNLLGKEEMDFRIKLYDSGELEELILKAGFKGSHVFSDFNRRESIDRNTEIFLYKCYI
>CP014174.1|AUN22012.1|2297652_2299059_+|MFS-transporter
MSEKKQKHPIGLWLVNISIALQSYAAYAVVSILILFLTADVSKNGLGLSVSKAAAIIGLYQGINYMGSLVGGYITDKWLGIQKSLILGCFLTACGYLALFFAKPNIGSVWLGLIILIVAGAFFKAQISSLVGELYGKNELSKKDAAYSIFYMFINIGAFFGPIIAGLISDKWFAKVAADGEIAAYGYKYIFLMCTLIMIFIGIFIWIVSPKWLGEIGKYPVSKDKKTSTESVSTKSTEKAKAQPLTQLEKNRIKAMIVMFVFVIIFWSAWDQTATSFSLLANKLVNRTIGGFTMPVPWLTSINAIFCVVLSPIIANIWLKLGNSKKGDLSVPTKMGLGMILTGIAFLTLILGISTLGGVLDGSKQMNILFIIVAYFLLTVGELCLSPIGMAMFNKLAPAKYGSLAMGAWYLSFFFSSIISGKLAGFTDTLGYTQIFGLISGIVIVFGVILILLRNGLLKLMSLDELDK
>CP014174.1|AUN22011.1|2296966_2297320_+|peptidase-M24
MHLFINKNKLSDEIKSSLKKNAALFIHPYNKIYKEVKKFTNSDVVLVHPDRINYELYNNIDKEVITEISSSNKLDAFPAEQGRFICPSFEPISSFGEHVTIVTCIFLMENSFMVVTV
>CP014174.1|AUN22010.1|2296028_2296643_-|galactoside-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADVHIESPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGIGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAIGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>CP014174.1|AUN22009.1|2295491_2295986_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPMKHIMSYPTEIRKRVESLPQYKDAIQKKEKKHLTVKIIAVFMFAIIFAVVAYFSGAKSFSKAYIHVFTLFFVVNIYDMIVLDIGLFCHSKKTRIPGTEDMDKEYRNPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>CP014174.1|AUN22008.1|2293009_2295160_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MHICYKSLLYSFLRYVESIDKAMYKENAFKLKDKLLNPILQESYELVTKNIKKKKCKDGTFRLMNIFSNINDSKRKKFNLLKEIDINRYDNILKENGEEIDKAYCINYVKSIIKKLLQNDNEKIYFLMSKYCSNVPFINSKNCDISLFDIAKVTAAIATCKEKNKEEYILIKGDFSGIQSFIFKTSSDGALKTLKGRSVYLTLLQEICAKYIVKELGLSLCNILYSGGGNFYILASKSDENKIKLLRKQLSKLILKAYNGEIYLALGYLSFKEEDFKNFNILWKNIGEEVGFLKSKRWSELNLKESFNEIFGPLDLGGRREHSCRLCGCINKNLKEGMCDLCISFKDFSMEMKKANFYCEKIIPKADISLHNNVKDIFHELGFEIKFSDKPLKGFKNYIINSCDFEAYDGFIFKSVKLSDESLDYMVQKQKGNNKVGVIKLDIDNLGKLFINGLGNEGSISKIISLSRNISMFFEGYIENILYKSKRLDKLKEYLKTSDWEKRVTIIFSGGDDTFIIGRYEEILEFALLIREVFEEFVGGEQLTFSAGIGIFDYNYPVINIAEDTERCLELAKNHIEGNEIYAKKNKVCIMGQVFTWNEFLEIIKLKNLIEEIYLLSSKKSIFEKINKSTLGFKAVVEGGKRLNYIKLHRLAYYLRDLNNASNKNLKNKVEELIEFYEELCLKAFMGNNKKNYNINNIMIIPVASKLAQYNYRIIN
>CP014174.1|AUN22007.1|2292592_2292991_-|type-III-A-CRISPR-associated-protein-Csm2
MEKDYKTDKFREYEEYFKKNVLTLDKINYDQFIEKSKDYSRLLKNNGLTTSMIRKIYNEILKANEAIDLKRLRPILAYTYGRNRVKGLQSLFYTLDDLLKRLNLKTNYLEIENVKEFLEVIIAYMKFYGDRY
>CP014174.1|AUN22006.1|2291830_2292580_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MNLLMGKIFIDGDIILKTGLRIGGGNNSIEIGGIDNNVIKNHRGEPYIPGSSLKGKLRSLLEISTNRLKDGRPCNCGECSICSIFGVGANENKQNLPTRIIVRDAFLNEDIKKQMYEKQGQFKRLELNYTESKYENTIDRLNSKATPRLIERVPEGASFRLQIIYSVFNNKDIDNFNDLIKGMKLLEDDYLGSNGSRGYGQVEFDNLNIKIKVIKDYKTKEVLNKSSLTDIDSVCLKEKLNELIEIKGV
>CP014174.1|AUN22016.1|2302202_2304200_-|2-enoate-reductase
MKDKYKVLYDPIKIGKLEIKNRYVLAPMGPGGMCNADGSFNKRGIEFYVERAKGGTGLIMTGVTMVENNIEKCALPSMPCPTINPLNFITTGNEMTERVHAYGAKIFLQLSAGFGRVSIPSIVGKVAVAPSKIPHRFLPGVTCRELTTEEVKEYVKAFGESAEIAKKAGFDGVEIHAVHEGYLLDQFAISFFNHRTDEYGESLENRLRFACEVVQEIKKRCGQDFPVSLRYSIKSFIKDWCKGGLPDEEFEEKGRDIPEGIEAAKILVAAGYDALNGDVGSYDSWYWSHPPMYQKKGLYLPYNEILKKVVDVPIITAGRMEDPELSSDAILSGKTDMIALGRPLLADAEIPNKIFEDKYDKVRPCLSCQEGCMGRLQNFATVSCAVNPACGREKEYGLKKAEQIKKVLVVGGGVAGMEAARVAAVRGHKVTLIEKNGYLGGNIVPGGIPDFKDDDRALVKWYEGILKDLGVEIKLNVDASKENIKEFGADEVLLATGSSPRTLTIEGADKVYSAEDVLMERKNVGEKVIVIGGGLVGCETALWLKQQGKEVTIVEMQNDILQVGGPLCHANHDMLVDLIKFNKIDVKTSSYISKKTDEGFVLNTNGEESIINADSAVVAIGYLSEKDLYSEVRFDIPNARLIGDANKVQNIMYAIWSAYEVAKNI
>CP014174.1|AUN22017.1|2304296_2305094_-|MerR-family-transcriptional-regulator
MRYSITDLAEILGCTTSAIHYFEKEHLIEVEKGKNGHRYYNVVDVFRLLSYTKYRSMEIPMKTIIAQFGGEENNYKLIEKRETMYQLEALKRAQYYMNLADAIEEHLVSIRRIEELLNKYEFAKSPEVTIMCDDECGWLSKKRSSQKIIHEWVKAMPTVQLGVFDSRMGMSNFGYLVKTKKREELELPLGLHAKELKSTSCIHTIVMADEDFTQQPQKVFKKASEFVIKKGLEIGEIAWGKILLVEVEKGAKLHPYIELWISIKM
>CP014174.1|AUN22018.1|2305141_2305435_-|hypothetical-protein
MNFFTLNILIGAMAFIINKINNMSQDIDPFEAFNDIEENLDEIDNEKVTNFVNGLINASMSNPSIGYFFMFLVYMTPILNLLLLIKGIVNYFNREAG
>CP014174.1|AUN22019.1|2305609_2306059_-|transcriptional-regulator
MKLDEIDVLILQELQKDSRLSIRELSKRINLSPPSVTERVRRLEDDGVIEKYTIKINKKKLGLSIDCIVKVTMKNGQYEKFKIFIKEYKRSEWCYRIAGDGCFLVKLLVKSLNDIEEFINDISSYAITETIIAFSEVTINNGINKFLGE
>CP014174.1|AUN22020.1|2306197_2306614_+|alkylhydroperoxidase
MAKITFSQEGLTPFQQLLGHNKYIMEKWTSLEECFFNSNTFTHELKEEVRRTLAFNNGCQYCMSKGKPSNEITNSKILIATKIADIISKNQLIDNECFNRLKNEFSDNEVSELLALICFITASQKFGALLDLQPSCSI
>CP014174.1|AUN22021.1|2306925_2307846_-|phenazine-biosynthesis-protein-PhzF
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNFSETTFVTDIGPNHKKLRIFTPKTELPMAGHPTIGTAFVLADEGVIETREGINKLIFEEGVGEIAVSIHVEGGRIRSIEMEQPMPVFGRVFGDIRTAAELLSLDIADIDTTSPIQTVSTGVPFLYIPLKSLDGISKIKLRLDTWEKFFSASEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIVEDPATGGASGPLGAYLVEHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGVIELPTL
>CP014174.1|AUN22022.1|2308169_2309663_+|GntR-family-transcriptional-regulator
MNIKIDKNSLITITQQLVHYFSDRIMSEFIKAGQKLPSIRNLAKELGISPMTIIKAYNNLEQNGLVTTIQGKGTYVNERNSTVKSNNITEKDSFQWQMSVPDYLSRSQFRYNPNLSYSNDYYNLSVASLNHKLLPTKTILKDSLSLIQNDIKLLSQYPPAQGDYEFRNIMSQYLRSKEIATSPENILVTSGSQQGISLIASTFIGPGDIVVMETPTYPGAIDLFKCRGAVILTVPVDSEGMRTDILMNLCDKHSPKLIYTIPNFHNPTGYSMSSNRKAELLDIARYNDILIVEDDPWNEISYKREKIKSIKSMDTDGHVVYIKSLSKILGPSYRLAVIISESSILSRLIAAKSNHDLGTSVLIQKTIINFIQSNKITYYIENLNKQLVKRRDKVISLLKSHAPSGMKWAIPEGGINIWVTLPKNFNVEKLLSYSITTKNISFLPGTICYPNEVEFNNLRICFTYLDEEFIEDTIIELCNLIKLLYTTKNITDYRPII
>CP014174.1|AUN22023.1|2310521_2310977_+|hypothetical-protein
MSKLNPEKLSVEFRDGVTGTEPILGRRYTLTHSDITAELFLTIGLTYAYDKIDVMRDEVLGEWIEKEKNYLFHVYLHVDGNNPIVTGVRNHIFRRELHLALEAIRYGDRKFFISHPKLDNSPVIVHFISSYPSFDRIEKWGTFSDYSLKKR
>CP014174.1|AUN22024.1|2311056_2311524_-|transcriptional-regulator
MSLGEKLLYLRKKEGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDYLISENYISGDVTGIEMIVDEIDWTGAWSKKYSILASYPGIKGINTYSEKISELYDSFKNDFGFNDTDTVLVLKDILYQKYKMEKKKKVDNSKEKI
>CP014174.1|AUN22025.1|2311691_2312738_-|esterase
MEVNGVKKVIKVVSVILVILVIAGFFIIKNLTETKDGKLNMYVAANLQLYKILNPKSLNNKSIEETRGALNKQSTRWSNKPIPFSNIKNLDIKMNNEKIPVRIYTPEKGSNFPIIIYSHGGFWIGGNVDTIDGVCRKLSQNTKAIVISVNYRLAPENPFPAGLNDVYNVLQWTYKNGKSINGDEKHIAVVGDSAGGNLSAAVSSMSRDKNGPSITCQVLIYPSTNIFKLNSKSWSHFSNSFNVSTEDMEKYISIYAPKKEDRKSPYASPLLSKDLRKLPDTLVVTAEIDPLRDEGEAYANKLKESGVKAEVTRYKGITHGFITMDKITNKADEALNQISLYIQKEFQK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	84483-84517	2	0.943
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	28409-28443	2	0.943
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	9866-9900	2	0.943
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	5036-5070	3	0.914
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	79434-79468	3	0.914
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	102786-102820	3	0.914
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	79772-79806	4	0.886
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	200531-200565	4	0.886
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	83392-83426	4	0.886
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	205022-205056	5	0.857
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	29200-29234	6	0.829
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	9075-9109	6	0.829
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	169943-169977	6	0.829
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NC_012654	Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence	146329-146363	6	0.829
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NZ_CP031095	Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence	235820-235854	6	0.829
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	37038-37072	6	0.829
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	88444-88478	7	0.8
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	168896-168930	8	0.771
CP014174_5	5.1\|2286998\|35\|CP014174\|CRISPRCasFinder	2286998-2287032	35	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	249579-249613	8	0.771
CP014174_3	3.2\|1884908\|40\|CP014174\|CRISPRCasFinder	1884908-1884947	40	NC_018689	Bacillus thuringiensis MC28 plasmid pMC429, complete sequence	417214-417253	11	0.725

1. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 2, identity: 0.943

taatacaaaaattagatccaggaatgaaattatta	CRISPR spacer
caatacaaaaattagatccaggaatgaaataatta	Protospacer
.***************************** ****

2. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 2, identity: 0.943

taatacaaaaattagatccaggaatgaaattatta	CRISPR spacer
taattcaaaaattatatccaggaatgaaattatta	Protospacer
**** ********* ********************

3. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 2, identity: 0.943

taatacaaaaattagatccaggaatgaaattatta	CRISPR spacer
taattcaaaaattatatccaggaatgaaattatta	Protospacer
**** ********* ********************

4. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 3, identity: 0.914

taatacaaaaattagatccaggaatgaaattatta	CRISPR spacer
caatacaaaaattagatccaggaatgaaattaatg	Protospacer
.******************************* *.

5. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 3, identity: 0.914

taatacaaaaattagatccaggaa-tgaaattatta	CRISPR spacer
taatacaagaataagatccaggaattgaaattatt-	Protospacer
********.*** *********** **********

6. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 3, identity: 0.914

taatacaaaaattagatccaggaa-tgaaattatta	CRISPR spacer
taatacaagaataagatccaggaattgaaattatt-	Protospacer
********.*** *********** **********

7. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 4, identity: 0.886

taatacaaaaattagatccaggaatgaaattatta	CRISPR spacer
caatccaaaaattagatccaggaataaaattattg	Protospacer
.*** ********************.********.

8. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 4, identity: 0.886

taatacaaaaattagatccaggaatgaaattatta	CRISPR spacer
gacttcaaaaattatatccaggaatgaaattatta	Protospacer
 * * ********* ********************

9. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 4, identity: 0.886

taatacaaaaattagatccaggaatgaaattatta	CRISPR spacer
taatacaaatattagatccaggaatgaaataaatg	Protospacer
********* ******************** * *.

10. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 5, identity: 0.857

taatacaaaaattagatccaggaatgaaattatta	CRISPR spacer
cagtccaaagattatatccaggaatgaaattatta	Protospacer
.*.* ****.**** ********************

11. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 6, identity: 0.829

taatacaaaaattagatccaggaatgaaat-tatta	CRISPR spacer
tctttcaaatagtagatccaggaatgaaatatatt-	Protospacer
*  * **** * ****************** ****

12. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 6, identity: 0.829

taatacaaaaattagatccaggaatgaaat-tatta	CRISPR spacer
tctttcaaatagtagatccaggaatgaaatatatt-	Protospacer
*  * **** * ****************** ****

13. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 6, identity: 0.829

taatacaaaaattagatccaggaatgaaat-tatta	CRISPR spacer
tctttcaaatagtagatccaggaatgaaatatatt-	Protospacer
*  * **** * ****************** ****

14. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 6, identity: 0.829

taatacaaaaattagatccaggaatgaaat-tatta	CRISPR spacer
tctttcaaatagtagatccaggaatgaaatatatt-	Protospacer
*  * **** * ****************** ****

15. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 6, identity: 0.829

taatacaaaaattagatccaggaatgaaat-tatta	CRISPR spacer
tctttcaaatagtagatccaggaatgaaatatatt-	Protospacer
*  * **** * ****************** ****

16. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 6, identity: 0.829

taatacaaaaattagatccaggaatgaaat-tatta	CRISPR spacer
tctttcaaatagtagatccaggaatgaaatatatt-	Protospacer
*  * **** * ****************** ****

17. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 7, identity: 0.8

taatacaaaaattagatccaggaatgaaattatta	CRISPR spacer
caattcaaaaattagatccagaaatgaaatgaaag	Protospacer
.*** ****************.******** *  .

18. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 8, identity: 0.771

taatacaaaaattagatccaggaatgaaattatta	CRISPR spacer
tctttcaaaaattaaatccaggaatgaaatgaagg	Protospacer
*  * *********.*************** *  .

19. spacer 5.1|2286998|35|CP014174|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 8, identity: 0.771

taatacaaaaattagatccaggaatgaaattatta	CRISPR spacer
tctttcaaaaattaaatccaggaatgaaatgaagg	Protospacer
*  * *********.*************** *  .

20. spacer 3.2|1884908|40|CP014174|CRISPRCasFinder matches to NC_018689 (Bacillus thuringiensis MC28 plasmid pMC429, complete sequence) position: , mismatch: 11, identity: 0.725

tatttaaaggatttaaactta---catcatttagatctaagag	CRISPR spacer
tatttaaaggatttaaacttagttcattacataggttatc---	Protospacer
*********************   ***.*. ***.*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

574172 : 583588

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN20503.1\|574172_576401_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	6.4e-106	34.0
AUN20504.1\|577048_577258_+	hypothetical protein	H7BUU1	unidentified_phage	1.2e-14	61.9
AUN20505.1\|578138_578486_+	hypothetical protein	A0A0A7RTL9	Clostridium_phage	1.7e-29	60.5
AUN20506.1\|578504_578654_-	hypothetical protein	NA	NA	NA	NA
AUN20507.1\|579171_579981_+	hypothetical protein	A0A2I2L551	Orpheovirus	3.0e-45	40.6
AUN23635.1\|580402_580564_-	recombinase XerC	NA	NA	NA	NA
AUN20508.1\|580939_582316_+	phosphate starvation-inducible protein PhoH	A0A141HS37	Bacillus_phage	3.0e-106	44.3
AUN20509.1\|582583_583588_+	exopolysaccharide biosynthesis protein	A0A1P8CWN9	Bacillus_phage	4.3e-09	30.7

DBSCAN-SWA_2

919573 : 931274

Clostridium_botulinum_D_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN20815.1\|919573_921454_-	hemagglutinin	Q786X9	Clostridium_botulinum_D_phage	7.8e-238	67.5
AUN20816.1\|921467_921908_-	hemagglutinin	Q786Y1	Clostridium_botulinum_D_phage	3.0e-47	63.7
AUN20817.1\|921970_922855_-	hemagglutinin	Q38196	Clostridium_botulinum_phage	2.8e-36	34.5
AUN23638.1\|923081_923618_+	transcriptional regulator BotR, P-21	Q38195	Clostridium_botulinum_phage	2.8e-39	52.2
AUN23639.1\|923779_927373_+	peptidase M27	Q332E1	Clostridium_botulinum_C_phage	0.0e+00	69.1
AUN20818.1\|927398_931274_+	peptidase M27	Q332E0	Clostridium_botulinum_C_phage	7.8e-184	33.1

DBSCAN-SWA_3

1715046 : 1722112

uncultured_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN21525.1\|1715046_1715991_-	DeoR family transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	4.2e-14	31.6
AUN21526.1\|1716614_1717610_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA
AUN21527.1\|1717726_1718488_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA
AUN21528.1\|1718505_1718937_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	1.0e-12	33.1
AUN21529.1\|1718938_1719604_+	7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	1.7e-38	44.1
AUN21530.1\|1719607_1720198_+	GTP cyclohydrolase I FolE	S4U0J3	uncultured_phage	7.0e-44	52.8
AUN21531.1\|1720381_1721041_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.0e-59	51.2
AUN21532.1\|1721155_1722112_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.7e-16	33.5

DBSCAN-SWA_4

2421418 : 2446357

Clostridium_phage(55.0%)

terminase,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN22126.1\|2421418_2421634_-	hypothetical protein	A0A2H4JGH3	uncultured_Caudovirales_phage	1.0e-08	67.4
AUN22127.1\|2421649_2421955_-	hypothetical protein	J9QEB9	Clostridium_phage	5.6e-05	37.0
AUN22128.1\|2421970_2423485_-	hypothetical protein	E2ELJ8	Clostridium_phage	6.4e-57	42.4
AUN22129.1\|2423484_2424579_-	hypothetical protein	E2ELJ7	Clostridium_phage	8.9e-93	47.6
AUN22130.1\|2424582_2425449_-\|tail	phage tail protein	E2ELJ6	Clostridium_phage	1.6e-81	54.0
AUN22131.1\|2425462_2431192_-\|tail	phage tail tape measure protein	A0A0A7RVT5	Clostridium_phage	1.1e-43	31.2
AUN22132.1\|2431402_2432014_-	hypothetical protein	NA	NA	NA	NA
AUN22133.1\|2432228_2432675_-	hypothetical protein	NA	NA	NA	NA
AUN22134.1\|2432729_2433356_-	hypothetical protein	E7DNB3	Pneumococcus_phage	1.5e-39	48.4
AUN22135.1\|2433359_2433698_-	hypothetical protein	A0A0A8WEH0	Clostridium_phage	2.5e-06	29.9
AUN22136.1\|2433697_2434072_-	hypothetical protein	A0A1U9WR56	Streptococcus_virus	1.2e-12	32.4
AUN22137.1\|2434064_2434430_-	hypothetical protein	NA	NA	NA	NA
AUN22138.1\|2434426_2434735_-	hypothetical protein	A0A2H4J040	uncultured_Caudovirales_phage	6.0e-31	61.2
AUN22139.1\|2434737_2434944_-	hypothetical protein	NA	NA	NA	NA
AUN22140.1\|2435000_2436053_-\|capsid	phage capsid protein	D9ZND6	Clostridium_phage	4.4e-89	51.4
AUN22141.1\|2436066_2436459_-	hypothetical protein	NA	NA	NA	NA
AUN22142.1\|2436479_2437094_-\|capsid	phage capsid protein	A0A1Z1LZK8	Bacillus_phage	1.9e-07	26.8
AUN22143.1\|2437225_2437753_-	hypothetical protein	NA	NA	NA	NA
AUN22144.1\|2437889_2438186_-	hypothetical protein	NA	NA	NA	NA
AUN22145.1\|2438195_2439161_-	hypothetical protein	A0A2H4J048	uncultured_Caudovirales_phage	4.9e-87	50.6
AUN22146.1\|2439160_2440666_-	hypothetical protein	D9ZNC8	Clostridium_phage	2.3e-139	52.0
AUN22147.1\|2440665_2442021_-\|terminase	terminase	A0A2P1JTW5	Anoxybacillus_phage	3.6e-160	65.6
AUN22148.1\|2442020_2442917_-\|terminase	terminase	A0A0A7RTY1	Clostridium_phage	4.6e-79	57.2
AUN22149.1\|2443013_2443253_-	peptidase	NA	NA	NA	NA
AUN22150.1\|2443368_2443578_-	hypothetical protein	A0A0A7RTM8	Clostridium_phage	1.6e-11	72.6
AUN22151.1\|2443805_2444258_-	hypothetical protein	A0A0A7RTX6	Clostridium_phage	4.4e-22	40.6
AUN22152.1\|2444244_2444691_-	hypothetical protein	U5U4M8	Lactobacillus_phage	3.5e-11	37.6
AUN22153.1\|2444693_2444924_-	hypothetical protein	NA	NA	NA	NA
AUN22154.1\|2444920_2445112_-	hypothetical protein	NA	NA	NA	NA
AUN22155.1\|2445209_2445509_-	hypothetical protein	NA	NA	NA	NA
AUN22156.1\|2445529_2446357_-	DNA methylase	A7YGL3	Campylobacter_phage	3.3e-31	35.4

DBSCAN-SWA_5

2451072 : 2464924

Clostridium_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN22168.1\|2451072_2451495_-	hypothetical protein	A0A0A7RTV9	Clostridium_phage	7.4e-56	75.9
AUN22169.1\|2451491_2451641_-	hypothetical protein	NA	NA	NA	NA
AUN22170.1\|2451746_2452334_-	HNH endonuclease	A0A1S5SAF6	Streptococcus_phage	1.7e-34	40.1
AUN22171.1\|2452336_2452573_-	hypothetical protein	A0A1V0E8D1	Vibrio_phage	2.7e-15	63.6
AUN22172.1\|2452614_2452791_-	DUF3797 domain-containing protein	A0A0H3UYX0	Geobacillus_virus	2.1e-12	61.7
AUN22173.1\|2452822_2453305_-	hypothetical protein	S6AVW3	Thermus_phage	6.6e-16	35.6
AUN22174.1\|2453304_2453547_-	AbrB family transcriptional regulator	A0A0K2CZ86	Paenibacillus_phage	1.8e-14	50.6
AUN22175.1\|2453549_2453870_-	hypothetical protein	NA	NA	NA	NA
AUN22176.1\|2453872_2454769_-	hypothetical protein	NA	NA	NA	NA
AUN23675.1\|2454786_2455593_-	DNA replication protein	A0A1B1P7U2	Bacillus_phage	7.6e-25	30.5
AUN22177.1\|2455567_2456458_-	hypothetical protein	A8ASN4	Listeria_phage	4.0e-43	39.6
AUN22178.1\|2456480_2456681_-	hypothetical protein	NA	NA	NA	NA
AUN22179.1\|2457026_2457173_-	hypothetical protein	NA	NA	NA	NA
AUN22180.1\|2457175_2458033_-	hypothetical protein	E5DV80	Deep-sea_thermophilic_phage	4.4e-55	46.7
AUN22181.1\|2458044_2458530_-	hypothetical protein	A0A059T5F1	Listeria_phage	4.0e-29	46.5
AUN22182.1\|2459215_2459425_-	hypothetical protein	NA	NA	NA	NA
AUN22183.1\|2459436_2460225_-	oxidoreductase	A0A0E3T9K5	Staphylococcus_phage	1.8e-87	64.5
AUN22184.1\|2460278_2460500_-	transcriptional regulator	NA	NA	NA	NA
AUN22185.1\|2460632_2461091_+	transcriptional regulator	S6C481	Thermus_phage	2.2e-05	31.1
AUN22186.1\|2461137_2461572_+	hypothetical protein	D6R412	Bacillus_phage	3.7e-26	47.9
AUN23676.1\|2461869_2463207_+	hypothetical protein	X5JAC1	Clostridium_phage	3.1e-55	48.6
AUN22187.1\|2463301_2464924_+	resolvase	A0A1L2BY67	Clostridium_phage	3.1e-94	37.3

DBSCAN-SWA_6

2510552 : 2517844

Clostridium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN22235.1\|2510552_2511575_-	hypothetical protein	Q0SPG7	Clostridium_phage	1.4e-36	41.5
AUN23681.1\|2511610_2511871_-	hypothetical protein	A0A0A7RUL4	Clostridium_phage	3.4e-27	71.4
AUN22236.1\|2511888_2512215_-	hypothetical protein	NA	NA	NA	NA
AUN23682.1\|2512325_2512403_-	hypothetical protein	NA	NA	NA	NA
AUN22237.1\|2512462_2512864_-	hypothetical protein	NA	NA	NA	NA
AUN22238.1\|2514496_2515168_-	hypothetical protein	A9YX13	Burkholderia_phage	5.0e-22	37.7
AUN22239.1\|2515179_2516349_-	hypothetical protein	A0A0P0I499	Acinetobacter_phage	1.3e-62	40.2
AUN22240.1\|2516419_2516977_+	hypothetical protein	A0A0N7EMH0	Pseudomonas_phage	4.2e-06	25.8
AUN22241.1\|2516982_2517339_-	hypothetical protein	NA	NA	NA	NA
AUN23683.1\|2517328_2517844_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	6.1e-36	49.0

DBSCAN-SWA_7

2539799 : 2557171

Clostridium_phage(47.37%)

integrase

attL 2535539:2535557|attR 2557903:2557921

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2535539:2535557	attL	NA	NA	NA	NA
AUN22267.1\|2539799_2540321_-	hypothetical protein	A0A0A7RVS1	Clostridium_phage	1.0e-62	70.0
AUN22268.1\|2540331_2540574_-	hypothetical protein	NA	NA	NA	NA
AUN22269.1\|2540570_2540762_-	hypothetical protein	NA	NA	NA	NA
AUN22270.1\|2540850_2541177_-	hypothetical protein	NA	NA	NA	NA
AUN22271.1\|2541191_2542187_-\|integrase	integrase	S5M872	Bacillus_phage	3.3e-09	23.7
AUN22272.1\|2542245_2542509_-	hypothetical protein	NA	NA	NA	NA
AUN22273.1\|2542882_2543203_-	hypothetical protein	NA	NA	NA	NA
AUN22274.1\|2543386_2543734_-	hypothetical protein	A0A0A7RTL9	Clostridium_phage	3.2e-28	57.0
AUN23686.1\|2543736_2544072_-	hypothetical protein	D0R7I5	Paenibacillus_phage	8.9e-12	42.1
AUN22275.1\|2544317_2544680_-	HNH endonuclease	A0A0A7RVR5	Clostridium_phage	3.9e-21	44.9
AUN22276.1\|2544744_2545458_-	hypothetical protein	A0A0A7RWW3	Clostridium_phage	6.0e-74	64.0
AUN22277.1\|2545484_2545877_-	replication terminator protein	A0A0A7RUF3	Clostridium_phage	6.5e-38	63.1
AUN22278.1\|2546003_2546630_-	HNH endonuclease	A0A1S5SEZ9	Streptococcus_phage	1.5e-36	41.9
AUN22279.1\|2546635_2546869_-	hypothetical protein	A0A0E3TAK6	Staphylococcus_phage	5.4e-16	60.0
AUN22280.1\|2547162_2547402_-	AbrB family transcriptional regulator	A0A0K2CZ86	Paenibacillus_phage	2.3e-17	55.1
AUN22281.1\|2547454_2548330_-	hypothetical protein	A0A0A7RTY6	Clostridium_phage	7.9e-52	51.5
AUN22282.1\|2548503_2549220_-	MBL fold metallo-hydrolase	A0A1L2JY21	Aeribacillus_phage	2.9e-60	48.0
AUN22283.1\|2549221_2550148_-	recombinase RecT	A0A1L2JY28	Aeribacillus_phage	6.6e-57	46.3
AUN22284.1\|2550149_2552096_-	recombinase RecF	A0A1L2K2K3	Aeribacillus_phage	5.3e-96	35.8
AUN22285.1\|2552096_2552453_-	hypothetical protein	NA	NA	NA	NA
AUN22286.1\|2552614_2552797_-	hypothetical protein	A0A0A7RTQ2	Clostridium_phage	1.6e-07	49.2
AUN22287.1\|2552862_2553225_+	hypothetical protein	A0A0H4TJ44	Erysipelothrix_phage	1.4e-10	36.0
AUN22288.1\|2553207_2553504_-	hypothetical protein	NA	NA	NA	NA
AUN23687.1\|2553517_2554267_-	hypothetical protein	A0A0A7RUT3	Clostridium_phage	1.3e-58	53.3
AUN22289.1\|2554773_2554980_-	transcriptional regulator	NA	NA	NA	NA
AUN22290.1\|2555251_2555629_+	transcriptional regulator	A0A2H4J076	uncultured_Caudovirales_phage	2.0e-23	57.0
AUN22291.1\|2555632_2557171_+	resolvase	A0A1L2BY67	Clostridium_phage	2.5e-69	34.6
2557903:2557921	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2734365 : 2806690

Clostridium_phage(64.29%)

portal,bacteriocin,capsid,tRNA,head,terminase,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN22457.1\|2734365_2737005_-\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	1.9e-64	33.4
AUN22458.1\|2737505_2738534_-	AI-2E family transporter	NA	NA	NA	NA
AUN22459.1\|2738546_2739035_-	photosystem reaction center subunit H	NA	NA	NA	NA
AUN22460.1\|2739216_2739645_-	iron-sulfur cluster assembly scaffold protein	A0A2H4N7M4	Lake_Baikal_phage	4.2e-30	54.5
AUN22461.1\|2739646_2740840_-	cysteine desulfurase IscS	NA	NA	NA	NA
AUN22462.1\|2740832_2741279_-	transcriptional regulator	NA	NA	NA	NA
AUN22463.1\|2741498_2742749_-	AAA family ATPase	A0A127AWE7	Bacillus_phage	9.2e-86	42.3
AUN22464.1\|2743095_2743863_-	histidinol-phosphatase	NA	NA	NA	NA
AUN22465.1\|2744189_2745098_-	transporter	NA	NA	NA	NA
AUN22466.1\|2745205_2746072_-	fatty acid-binding protein DegV	A0A0N9SI50	Staphylococcus_phage	7.4e-10	32.6
AUN22467.1\|2746399_2746984_+	SirA family protein	NA	NA	NA	NA
AUN22468.1\|2747235_2748225_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA
AUN22469.1\|2748346_2749714_-	sodium:alanine symporter family protein	NA	NA	NA	NA
AUN22470.1\|2750458_2751793_-	sodium:alanine symporter family protein	NA	NA	NA	NA
AUN22471.1\|2752169_2752823_+	hypothetical protein	NA	NA	NA	NA
AUN22472.1\|2752960_2753437_-	copper amine oxidase	NA	NA	NA	NA
AUN22473.1\|2753800_2757562_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	4.5e-27	23.1
AUN22474.1\|2757760_2759110_-	MATE family efflux transporter	NA	NA	NA	NA
AUN22475.1\|2759106_2761584_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	1.6e-49	39.8
AUN22476.1\|2761588_2761864_-	acyl carrier protein	NA	NA	NA	NA
AUN22477.1\|2761869_2763408_-	acyl-CoA synthetase	NA	NA	NA	NA
AUN22478.1\|2763424_2764435_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
AUN22479.1\|2764443_2765301_-	bact protein	NA	NA	NA	NA
AUN22480.1\|2765341_2767171_-	peptide synthetase	A0A2K9L3I8	Tupanvirus	8.0e-54	29.4
AUN22481.1\|2767211_2767724_-	N-acetyltransferase	NA	NA	NA	NA
AUN22482.1\|2767727_2767976_-	acyl carrier protein	NA	NA	NA	NA
AUN22483.1\|2767984_2769001_-	FAD synthetase	NA	NA	NA	NA
AUN22484.1\|2768997_2770191_-	hypothetical protein	NA	NA	NA	NA
AUN22485.1\|2770209_2770950_-	hypothetical protein	NA	NA	NA	NA
AUN22486.1\|2771415_2772417_-	ornithine carbamoyltransferase	NA	NA	NA	NA
AUN22487.1\|2772511_2773456_-	carbamate kinase	NA	NA	NA	NA
AUN22488.1\|2774019_2775261_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	4.7e-98	52.1
AUN22489.1\|2775434_2776205_+	hypothetical protein	NA	NA	NA	NA
AUN22490.1\|2776201_2776690_+	hypothetical protein	NA	NA	NA	NA
AUN22491.1\|2776756_2777026_-	hypothetical protein	NA	NA	NA	NA
AUN22492.1\|2777226_2778051_-	HAD family hydrolase	NA	NA	NA	NA
AUN22493.1\|2778163_2778640_+	hypothetical protein	NA	NA	NA	NA
AUN22494.1\|2779050_2783916_+	cytidyltransferase	NA	NA	NA	NA
AUN22495.1\|2783992_2785216_+	lactate dehydrogenase	NA	NA	NA	NA
AUN22496.1\|2785369_2786425_+	FMN reductase	NA	NA	NA	NA
AUN22497.1\|2786615_2787455_+	hydrolase	NA	NA	NA	NA
AUN22498.1\|2788088_2788322_-	hypothetical protein	NA	NA	NA	NA
AUN22499.1\|2788509_2789097_-	hypothetical protein	A0A0A7RUM7	Clostridium_phage	1.1e-09	31.6
AUN22500.1\|2789223_2789985_-	N-acetylmuramoyl-L-alanine amidase	I1TJX3	Clostridium_phage	2.0e-51	57.0
AUN22501.1\|2789984_2790158_-	hypothetical protein	NA	NA	NA	NA
AUN22502.1\|2790159_2790384_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
AUN22503.1\|2790592_2790787_-	hypothetical protein	NA	NA	NA	NA
AUN22504.1\|2790952_2791159_-	hypothetical protein	NA	NA	NA	NA
AUN22505.1\|2791425_2791722_-	hypothetical protein	J9QEB9	Clostridium_phage	1.5e-15	47.5
AUN22506.1\|2791732_2793025_-	hypothetical protein	E2ELJ8	Clostridium_phage	4.8e-53	38.5
AUN22507.1\|2793024_2794182_-	hypothetical protein	A0A0K2CZQ1	Paenibacillus_phage	2.5e-61	33.3
AUN23698.1\|2794187_2794997_-\|tail	phage tail protein	E2ELJ6	Clostridium_phage	8.7e-45	42.0
AUN22508.1\|2795072_2798588_-\|tail	phage tail tape measure protein	A0A0A7RVT5	Clostridium_phage	1.9e-112	73.4
AUN23699.1\|2798604_2798733_-	hemolysin	A0A0A7RUE3	Clostridium_phage	7.5e-12	73.8
AUN22509.1\|2798843_2799188_-	RNA polymerase subunit sigma	A0A0A7RUF5	Clostridium_phage	1.1e-36	71.4
AUN22510.1\|2799249_2799852_-\|tail	phage tail protein	A0A0A7RUI3	Clostridium_phage	4.2e-76	72.2
AUN22511.1\|2799914_2800271_-\|head,protease	prohead protease	A0A0A7S158	Clostridium_phage	4.1e-47	79.3
AUN22512.1\|2800281_2800644_-	hypothetical protein	A0A0A7RUF1	Clostridium_phage	2.2e-24	50.0
AUN22513.1\|2800644_2801025_-\|head,tail	head-tail adaptor protein	A0A0A7RUH8	Clostridium_phage	4.4e-39	71.6
AUN22514.1\|2801024_2801300_-	DNA packaging protein	I2E8V5	Clostridium_phage	7.6e-09	40.0
AUN22515.1\|2801345_2802437_-\|capsid	capsid protein	I2E8V4	Clostridium_phage	5.8e-76	46.2
AUN22516.1\|2802495_2803089_-	peptidase U35	Q8SBP9	Clostridium_phage	1.3e-34	47.5
AUN22517.1\|2803066_2804329_-\|portal	phage portal protein	I2E8V3	Clostridium_phage	1.9e-99	49.4
AUN22518.1\|2804336_2804522_-	hypothetical protein	I2E8V2	Clostridium_phage	1.6e-10	69.6
AUN22519.1\|2804522_2806208_-\|terminase	terminase	A0A0A7RUM0	Clostridium_phage	1.6e-178	55.3
AUN22520.1\|2806204_2806690_-\|terminase	terminase	A0A1G5SA54	Enterococcus_phage	9.3e-18	35.8

DBSCAN-SWA_9

3152595 : 3162079

Synechococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN22815.1\|3152595_3154095_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.9e-69	46.9
AUN22816.1\|3154308_3154926_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.5e-25	40.6
AUN22817.1\|3155053_3156049_-	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	9.9e-67	43.7
AUN22818.1\|3156109_3157558_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-58	35.1
AUN22819.1\|3157649_3158354_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	6.0e-42	42.1
AUN22820.1\|3158353_3158833_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.1e-26	48.7
AUN22821.1\|3159353_3159488_+	hypothetical protein	NA	NA	NA	NA
AUN22822.1\|3159508_3162079_-	selenium-dependent xanthine dehydrogenase	A0A0P0IVM8	Acinetobacter_phage	1.3e-09	32.4

DBSCAN-SWA_10

3302646 : 3330739

Clostridium_phage(80.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN22948.1\|3302646_3303771_-	chorismate synthase	A0A291AU41	Pandoravirus	1.2e-31	30.3
AUN22949.1\|3303911_3304682_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4J8A3	uncultured_Caudovirales_phage	1.1e-84	62.9
AUN22950.1\|3304828_3305023_-	hypothetical protein	NA	NA	NA	NA
AUN22951.1\|3305041_3305296_-	hypothetical protein	A0A0A7RTX0	Clostridium_phage	4.8e-26	70.9
AUN22952.1\|3305448_3306258_-	cell adhesion protein	NA	NA	NA	NA
AUN22953.1\|3306309_3307308_-	hypothetical protein	A0A0A7RU14	Clostridium_phage	6.5e-50	41.7
AUN22954.1\|3307394_3308174_-	hypothetical protein	NA	NA	NA	NA
AUN22955.1\|3308175_3308877_-	hypothetical protein	NA	NA	NA	NA
AUN22956.1\|3308957_3310043_-	signal peptidase II	A0A0A7RU66	Clostridium_phage	6.7e-141	69.8
AUN22957.1\|3310054_3311053_-	hypothetical protein	A0A0A7RW91	Clostridium_phage	7.5e-139	71.1
AUN22958.1\|3311064_3311319_-	hypothetical protein	A0A0A7S0T0	Clostridium_phage	1.1e-33	81.0
AUN22959.1\|3311324_3313220_-	hypothetical protein	A0A0A7RU09	Clostridium_phage	2.9e-115	52.3
AUN22960.1\|3313234_3314473_-	hypothetical protein	A0A0A7RU28	Clostridium_phage	1.5e-197	81.3
AUN22961.1\|3314495_3315476_-	hypothetical protein	A0A0A7RU61	Clostridium_phage	6.1e-109	61.6
AUN22962.1\|3315477_3316827_-	hypothetical protein	A0A0A7RW86	Clostridium_phage	9.6e-73	73.0
AUN22963.1\|3316841_3317183_-	hypothetical protein	A0A0A7S0S4	Clostridium_phage	2.7e-16	55.7
AUN22964.1\|3317195_3318281_-	hypothetical protein	NA	NA	NA	NA
AUN22965.1\|3318267_3318702_-	hypothetical protein	NA	NA	NA	NA
AUN22966.1\|3318714_3320118_-	hypothetical protein	A0A0A7RU22	Clostridium_phage	1.2e-04	42.4
AUN22967.1\|3320193_3320361_-	hypothetical protein	A0A0A7RW80	Clostridium_phage	1.1e-15	68.5
AUN22968.1\|3320395_3320812_-	esterase	A0A0A7S0S0	Clostridium_phage	7.6e-45	70.5
AUN22969.1\|3320827_3321715_-	hypothetical protein	A0A0A7RTZ9	Clostridium_phage	3.1e-120	75.3
AUN22970.1\|3321719_3322139_-	hypothetical protein	A0A0A7RU17	Clostridium_phage	3.5e-58	72.7
AUN22971.1\|3322144_3322492_-	hypothetical protein	A0A0A7RU51	Clostridium_phage	1.3e-34	61.6
AUN22972.1\|3322496_3322862_-	hypothetical protein	A0A0A7RW73	Clostridium_phage	3.8e-32	56.2
AUN22973.1\|3322861_3323146_-	hypothetical protein	A0A0A7S0R4	Clostridium_phage	1.7e-24	60.2
AUN22974.1\|3323833_3324355_-	hypothetical protein	A0A0A7RVS1	Clostridium_phage	3.6e-36	50.6
AUN22975.1\|3324468_3324789_-	hypothetical protein	NA	NA	NA	NA
AUN22976.1\|3324845_3325694_-	DNA replication protein	A0A2K9V3L7	Faecalibacterium_phage	3.0e-32	36.3
AUN22977.1\|3325635_3326550_-	hypothetical protein	A8ASN4	Listeria_phage	3.3e-40	39.1
AUN22978.1\|3326634_3326868_-	transcriptional regulator	NA	NA	NA	NA
AUN22979.1\|3326908_3327118_-	transcriptional regulator	NA	NA	NA	NA
AUN22980.1\|3327309_3327720_+	transcriptional regulator	A0A0A7RUJ5	Clostridium_phage	1.0e-09	56.2
AUN22981.1\|3328021_3328171_+	hypothetical protein	NA	NA	NA	NA
AUN22982.1\|3329251_3330739_+	membrane-bound O-acyltransferase family protein	A0A125RNP0	Pseudomonas_phage	3.7e-65	38.1

DBSCAN-SWA_11

3528414 : 3583055

Clostridium_phage(45.16%)

integrase,portal,capsid,tRNA,head,terminase,tail,protease

attL 3557743:3557762|attR 3560445:3560464

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN23155.1\|3528414_3528831_-	hypothetical protein	M9Q253	Clostridium_phage	5.5e-35	55.9
AUN23156.1\|3528844_3529603_-	DNA adenine methylase	Q0SPG6	Clostridium_phage	5.5e-110	75.4
AUN23157.1\|3529854_3530145_-	hypothetical protein	NA	NA	NA	NA
AUN23158.1\|3531577_3532654_-	hypothetical protein	E2ELJ7	Clostridium_phage	1.1e-124	60.7
AUN23159.1\|3532657_3533524_-\|tail	phage tail protein	E2ELJ6	Clostridium_phage	1.2e-95	61.2
AUN23160.1\|3533537_3538661_-\|tail	phage tail tape measure protein	E2ELJ5	Clostridium_phage	1.4e-15	63.2
AUN23161.1\|3538701_3538881_-	hypothetical protein	NA	NA	NA	NA
AUN23162.1\|3539142_3539424_-	hypothetical protein	E2ELJ2	Clostridium_phage	6.5e-16	48.4
AUN23163.1\|3539453_3540032_-	hypothetical protein	NA	NA	NA	NA
AUN23164.1\|3540031_3540376_-	hypothetical protein	E2ELJ0	Clostridium_phage	3.7e-21	46.9
AUN23165.1\|3540457_3540844_-	hypothetical protein	E2ELI9	Clostridium_phage	1.3e-27	50.7
AUN23166.1\|3540836_3541196_-\|head,tail	head-tail adaptor protein	A0A2I7SC03	Paenibacillus_phage	9.3e-07	35.7
AUN23167.1\|3541146_3541446_-	hypothetical protein	A0A1B1P751	Bacillus_phage	3.8e-06	38.6
AUN23168.1\|3541455_3542601_-\|capsid	phage capsid protein	E2ELI5	Clostridium_phage	1.2e-124	59.0
AUN23169.1\|3542600_3543347_-\|protease	Clp protease	Q8W605	Listeria_phage	2.7e-48	51.8
AUN23170.1\|3543349_3544498_-\|portal	phage portal protein	E2ELI3	Clostridium_phage	3.6e-84	41.1
AUN23171.1\|3544516_3546172_-\|terminase	terminase	E2ELI2	Clostridium_phage	3.2e-150	49.4
AUN23172.1\|3546155_3546650_-	RNA polymerase subunit sigma-70	A0A1B1P762	Bacillus_phage	5.2e-16	45.4
AUN23173.1\|3546822_3547131_-	HNH endonuclease	A0A1S7FZ53	Listeria_phage	1.2e-18	48.5
AUN23174.1\|3547142_3547562_-	non-transporter ABC protein	NA	NA	NA	NA
AUN23175.1\|3547563_3547923_-	hypothetical protein	NA	NA	NA	NA
AUN23176.1\|3548132_3548324_-	hypothetical protein	NA	NA	NA	NA
AUN23177.1\|3548351_3548660_-	transglycosylase	NA	NA	NA	NA
AUN23178.1\|3548814_3549360_-\|integrase	site-specific integrase	Q8SBK8	Clostridium_phage	9.6e-56	57.5
AUN23720.1\|3549360_3549576_-	hypothetical protein	NA	NA	NA	NA
AUN23179.1\|3549760_3550189_-	hypothetical protein	NA	NA	NA	NA
AUN23180.1\|3550344_3550635_-	hypothetical protein	NA	NA	NA	NA
AUN23181.1\|3550627_3550780_-	hypothetical protein	NA	NA	NA	NA
AUN23182.1\|3550791_3551787_-\|integrase	integrase	A0A0K2CP59	Brevibacillus_phage	8.8e-23	27.1
AUN23183.1\|3552079_3553129_-	nucleoid-associated bacterial protein	J9QE81	Clostridium_phage	1.3e-37	29.0
AUN23184.1\|3553155_3553359_-	peptidoglycan-binding protein	NA	NA	NA	NA
AUN23185.1\|3553609_3553759_-	mszf55-1	NA	NA	NA	NA
AUN23186.1\|3554004_3554202_-	hypothetical protein	NA	NA	NA	NA
AUN23187.1\|3554262_3554583_-	hypothetical protein	NA	NA	NA	NA
AUN23188.1\|3554615_3554747_-	amino acid transporter	NA	NA	NA	NA
AUN23721.1\|3554947_3555607_-	DNA modification methylase	A0A1S5S9L2	Streptococcus_phage	2.1e-89	68.1
AUN23189.1\|3555648_3556077_-	phage N-6-adenine-methyltransferase	A0A0A7RUD1	Clostridium_phage	5.2e-73	92.1
AUN23190.1\|3556249_3557155_-	hypothetical protein	D2XR43	Bacillus_phage	6.7e-54	47.2
AUN23191.1\|3557225_3557444_-	transcriptional regulator	NA	NA	NA	NA
3557743:3557762	attL	NA	NA	NA	NA
AUN23192.1\|3557777_3558323_+	transcriptional regulator	A0A1U9WQN6	Geobacillus_phage	2.0e-05	44.6
AUN23193.1\|3558322_3559477_+\|integrase	site-specific integrase	A0A2R2ZGM9	Clostridioides_phage	1.7e-25	26.8
AUN23194.1\|3559679_3560225_-	reverse rubrerythrin	NA	NA	NA	NA
AUN23195.1\|3560866_3561565_-	pyruvate formate-lyase 1-activating enzyme	K0NXZ3	Escherichia_virus	3.6e-07	34.4
3560445:3560464	attR	NA	NA	NA	NA
AUN23196.1\|3561744_3563973_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	7.2e-174	45.1
AUN23197.1\|3564484_3564736_-	hypothetical protein	NA	NA	NA	NA
AUN23198.1\|3565163_3565733_-	5S rRNA E-loop-binding protein	NA	NA	NA	NA
AUN23199.1\|3565899_3566514_-	lipoprotein	NA	NA	NA	NA
AUN23200.1\|3566739_3567168_+	transcriptional repressor	NA	NA	NA	NA
AUN23201.1\|3567236_3568472_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUN23202.1\|3568572_3569508_+	hypothetical protein	NA	NA	NA	NA
AUN23203.1\|3569667_3570624_-	transcriptional regulator	NA	NA	NA	NA
AUN23204.1\|3570838_3571249_-	hypothetical protein	NA	NA	NA	NA
AUN23205.1\|3571303_3571549_-	hypothetical protein	NA	NA	NA	NA
AUN23206.1\|3571600_3572029_-	hypothetical protein	NA	NA	NA	NA
AUN23207.1\|3572247_3572973_-\|protease	CPBP family intramembrane metalloprotease	G3MBD0	Bacillus_virus	4.2e-06	27.8
AUN23208.1\|3572996_3573581_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
AUN23209.1\|3573595_3575917_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.5e-174	43.9
AUN23210.1\|3576054_3577734_-\|protease	ATP-dependent protease	K7YGL9	Megavirus	3.6e-16	31.6
AUN23211.1\|3577861_3579151_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.3e-145	59.8
AUN23212.1\|3579170_3579755_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.2e-56	59.2
AUN23213.1\|3579880_3581173_-	trigger factor	NA	NA	NA	NA
AUN23214.1\|3581350_3582136_-	AP endonuclease	NA	NA	NA	NA
AUN23215.1\|3582242_3583055_-\|tRNA	tRNA (guanine-N1)-methyltransferase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP014173

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 6121

Clostridium_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN19941.1\|236_1031_-	hypothetical protein	NA	NA	NA	NA
AUN19942.1\|1054_1300_-	stage III sporulation protein D	M9Q261	Clostridium_phage	2.8e-15	53.3
AUN19943.1\|1299_1617_-	hypothetical protein	NA	NA	NA	NA
AUN19944.1\|1768_1915_-	hypothetical protein	NA	NA	NA	NA
AUN19945.1\|1915_2527_-	hypothetical protein	A0A0A7RVW0	Clostridium_phage	5.0e-61	60.8
AUN19946.1\|2542_3430_-	hypothetical protein	A0A088FAU5	Sulfitobacter_phage	2.3e-70	47.3
AUN19947.1\|3448_3934_-	hypothetical protein	A0A059T5F1	Listeria_phage	1.3e-14	34.0
AUN19948.1\|4402_4786_+	hypothetical protein	NA	NA	NA	NA
AUN19949.1\|5080_6121_-	hypothetical protein	A0A2H4JAA4	uncultured_Caudovirales_phage	4.3e-20	43.0

DBSCAN-SWA_2

10358 : 11384

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN19954.1\|10358_11384_-	DNA (cytosine-5-)-methyltransferase	X2JIV2	Bacillus_phage	1.7e-69	41.7

DBSCAN-SWA_3

15269 : 36601

Aeribacillus_phage(16.67%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN19961.1\|15269_16436_-	hypothetical protein	G0YPL8	Erwinia_phage	1.9e-21	36.9
AUN19962.1\|16428_16800_-	hypothetical protein	NA	NA	NA	NA
AUN19963.1\|16804_17341_-	hypothetical protein	NA	NA	NA	NA
AUN19964.1\|17340_18153_-	hypothetical protein	A0A1L2JY62	Aeribacillus_phage	1.6e-30	29.5
AUN19965.1\|18145_18481_-	hypothetical protein	A0A1L2JY63	Aeribacillus_phage	3.5e-08	34.5
AUN19966.1\|18495_19005_-	hypothetical protein	NA	NA	NA	NA
AUN19967.1\|19069_19702_-	hypothetical protein	NA	NA	NA	NA
AUN19968.1\|19765_22450_-\|tail	phage tail tape measure protein	B6CXF2	Clostridium_phage	1.9e-72	41.5
AUN19969.1\|22647_23010_-	hypothetical protein	NA	NA	NA	NA
AUN19970.1\|23033_23243_-	hypothetical protein	NA	NA	NA	NA
AUN19971.1\|23258_23675_-	hypothetical protein	NA	NA	NA	NA
AUN19972.1\|23689_24727_-	hypothetical protein	A0A2D1GQ64	Lysinibacillus_phage	4.7e-19	31.9
AUN19973.1\|24731_25259_-	hypothetical protein	NA	NA	NA	NA
AUN19974.1\|25251_25593_-	hypothetical protein	NA	NA	NA	NA
AUN19975.1\|25609_26122_-	hypothetical protein	E5DV55	Deep-sea_thermophilic_phage	9.7e-26	39.1
AUN19976.1\|26118_26724_-	hypothetical protein	NA	NA	NA	NA
AUN19977.1\|26804_27131_-	hypothetical protein	NA	NA	NA	NA
AUN19978.1\|27143_28256_-	hypothetical protein	B0VK33	Azospirillum_phage	2.2e-62	41.6
AUN19979.1\|28272_28599_-	hypothetical protein	A0A0U3SQD7	Bacillus_phage	9.6e-11	35.4
AUN19980.1\|28599_29526_-	hypothetical protein	I6S2W2	Marinomonas_phage	7.0e-14	35.9
AUN19981.1\|29621_29858_-	hypothetical protein	NA	NA	NA	NA
AUN19982.1\|29873_30056_-	hypothetical protein	NA	NA	NA	NA
AUN19983.1\|30075_30267_-	hypothetical protein	NA	NA	NA	NA
AUN19984.1\|30270_30516_-	hypothetical protein	NA	NA	NA	NA
AUN19985.1\|30736_31123_-	hypothetical protein	A0A0K0MWE1	Streptococcus_phage	1.0e-27	48.9
AUN19986.1\|31484_31703_-	hypothetical protein	NA	NA	NA	NA
AUN19987.1\|31704_32058_-	hypothetical protein	NA	NA	NA	NA
AUN19988.1\|32061_33228_-	hypothetical protein	NA	NA	NA	NA
AUN19989.1\|33230_33377_-	hypothetical protein	NA	NA	NA	NA
AUN20028.1\|33370_33646_-	hypothetical protein	A0A2H4J4N1	uncultured_Caudovirales_phage	3.6e-35	83.9
AUN19990.1\|33662_33869_-	hypothetical protein	NA	NA	NA	NA
AUN19991.1\|34217_34478_-	hypothetical protein	NA	NA	NA	NA
AUN19992.1\|34507_34894_-	hypothetical protein	NA	NA	NA	NA
AUN19993.1\|34960_35113_-	hypothetical protein	NA	NA	NA	NA
AUN19994.1\|35142_35391_-	hypothetical protein	NA	NA	NA	NA
AUN20029.1\|35432_35672_-	hypothetical protein	NA	NA	NA	NA
AUN19995.1\|35833_36601_-	hypothetical protein	A7YGU2	Staphylococcus_virus	3.5e-11	25.3

DBSCAN-SWA_4

40483 : 54437

Clostridium_phage(30.77%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUN20003.1\|40483_41188_-	hypothetical protein	F0PIG9	Enterococcus_phage	6.4e-20	47.7
AUN20004.1\|41207_41471_-	hypothetical protein	NA	NA	NA	NA
AUN20005.1\|41981_42173_-	hypothetical protein	A0A2K9V2W7	Faecalibacterium_phage	2.4e-14	60.3
AUN20006.1\|42195_42378_-	hypothetical protein	NA	NA	NA	NA
AUN20007.1\|42388_42649_-	hypothetical protein	NA	NA	NA	NA
AUN20008.1\|42680_43085_-	hypothetical protein	NA	NA	NA	NA
AUN20009.1\|44193_45438_-\|terminase	terminase	A0A0S0KEN9	Bacillus_phage	2.4e-150	62.0
AUN20010.1\|45440_45851_-\|terminase	terminase small subunit	A0A0A8WDX8	Clostridium_phage	4.0e-22	42.8
AUN20011.1\|45840_46146_-	hypothetical protein	NA	NA	NA	NA
AUN20030.1\|46215_48546_-	hypothetical protein	A0A2H4J056	uncultured_Caudovirales_phage	6.6e-146	39.1
AUN20012.1\|48551_48785_-	hypothetical protein	NA	NA	NA	NA
AUN20013.1\|48796_49201_-	hypothetical protein	A0A2H4J7M8	uncultured_Caudovirales_phage	5.7e-13	37.0
AUN20014.1\|49373_49514_-	hypothetical protein	NA	NA	NA	NA
AUN20031.1\|49500_49614_-	hypothetical protein	NA	NA	NA	NA
AUN20015.1\|49991_50363_-	hypothetical protein	H7BVN4	unidentified_phage	3.1e-21	43.3
AUN20016.1\|50401_50647_-	hypothetical protein	NA	NA	NA	NA
AUN20017.1\|50667_50850_-	hypothetical protein	A0A0A7RTH9	Clostridium_phage	6.5e-17	82.5
AUN20018.1\|51370_52003_-	hypothetical protein	F8UBK4	Clostridium_phage	5.7e-44	45.9
AUN20019.1\|52006_52729_-	hypothetical protein	D2XR55	Bacillus_phage	7.5e-32	38.9
AUN20020.1\|52741_53206_-	hypothetical protein	D9ZNH9	Clostridium_phage	3.1e-15	38.8
AUN20021.1\|53269_53791_-	hypothetical protein	S6AVW3	Thermus_phage	1.7e-17	39.5
AUN20022.1\|53802_54000_-	hypothetical protein	NA	NA	NA	NA
AUN20023.1\|54002_54437_-	hypothetical protein	A0A0K2CPB0	Brevibacillus_phage	6.4e-10	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP014174

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP014173

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection