CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025791	Flavivirga eckloniae strain ECD14 chromosome, complete genome	4 crisprs	cas3,DEDDh,WYL,csa3,RT	0	0	1	0

1. CP025791

CRISPR-Cas detection and classification

Crispr_ID: CP025791_2

• CRISPR_ID: CP025791_2
• CRISPR_location: 886954-887044
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP025791_2

Consensus_repeat	Method
TTTTCGTAGTCTCAGGCAGACTC	CRISPRCasFinder

spacers of CP025791_2

>2.1|886977|45|CP025791|CRISPRCasFinder
CCTTCGACTGCGCTCAGGGTAAACTTCTCGTCTGTCTTTCGACCT

CRISPR arrays and Neighbor proteins around CP025791_2

CRISPR arrays

The CRISPR arrays of CP025791_2

>merge|CP025791|2|886954-887044|CRISPRCasFinder
TTTTCGTAGTCTCAGGCAGACTCCCTTCGACTGCGCTCAGGGTAAACTTCTCGTCTGTCTTTCGACCTCTTTCGTAGTCTCAGGCAGACTC

>CP025791|2|2|886954-887044|CRISPRCasFinder
TTTTCGTAGTCTCAGGCAGACTC	CCTTCGACTGCGCTCAGGGTAAACTTCTCGTCTGTCTTTCGACCT
CTTTCGTAGTCTCAGGCAGACTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP025791.1|AUP77874.1|892508_892706_+|50S-ribosomal-protein-L35	unknown	unknown	gnl|CDD|234676
CP025791.1|AUP77879.1|896685_897108_-|secondary-thiamine-phosphate-synthase	unknown	unknown	gnl|CDD|376651
CP025791.1|AUP77871.1|888879_889101_-|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP77869.1|881502_882321_+|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl|CDD|235467
CP025791.1|AUP77866.1|877403_878648_+|RND-transporter	unknown	unknown	gnl|CDD|273776
CP025791.1|AUP81526.1|882361_882541_+|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP77870.1|882542_883037_-|hypothetical-protein	unknown	unknown	gnl|CDD|378981
CP025791.1|AUP77875.1|892812_893157_+|50S-ribosomal-protein-L20	unknown	unknown	gnl|CDD|179959
CP025791.1|AUP77862.1|870564_870915_+|50S-ribosomal-protein-L19	unknown	unknown	gnl|CDD|376502
CP025791.1|AUP77880.1|897660_898479_+|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl|CDD|223635
CP025791.1|AUP77872.1|889852_891787_+|threonine--tRNA-ligase	unknown	unknown	gnl|CDD|234752
CP025791.1|AUP77864.1|874061_876437_+|hypothetical-protein	unknown	unknown	gnl|CDD|372685
CP025791.1|AUP77876.1|893261_895448_-|hypothetical-protein	unknown	unknown	gnl|CDD|275036
CP025791.1|AUP77867.1|878651_880004_+|hypothetical-protein	unknown	unknown	gnl|CDD|182528
CP025791.1|AUP77873.1|891825_892368_+|translation-initiation-factor-IF-3	unknown	unknown	gnl|CDD|234582
CP025791.1|AUP77865.1|876441_877263_+|DUF4249-domain-containing-protein	unknown	unknown	gnl|CDD|379442
CP025791.1|AUP77863.1|871775_873989_+|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl|CDD|377178
CP025791.1|AUP77877.1|895555_896509_-|hypothetical-protein	unknown	unknown	gnl|CDD|225117
CP025791.1|AUP77878.1|896507_896705_+|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP77868.1|880011_881472_+|transporter	unknown	unknown	gnl|CDD|224455

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP025791.1|AUP77874.1|892508_892706_+|50S-ribosomal-protein-L35	gnl|CDD|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	4.71579e-19
CP025791.1|AUP77879.1|896685_897108_-|secondary-thiamine-phosphate-synthase	gnl|CDD|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	4.38457e-58
CP025791.1|AUP77875.1|892812_893157_+|50S-ribosomal-protein-L20	gnl|CDD|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	5.08758e-60
CP025791.1|AUP77869.1|881502_882321_+|N-acetylmuramic-acid-6-phosphate-etherase	gnl|CDD|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	5.43331e-160
CP025791.1|AUP77866.1|877403_878648_+|RND-transporter	gnl|CDD|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	5.61224e-14
CP025791.1|AUP77873.1|891825_892368_+|translation-initiation-factor-IF-3	gnl|CDD|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	5.57564e-80
CP025791.1|AUP77870.1|882542_883037_-|hypothetical-protein	gnl|CDD|378981	pfam12867, DinB_2, DinB superfamily. The DinB family are an uncharacterized family of potential enzymes. The structure of these proteins is composed of a four helix bundle.	2.30089e-05
CP025791.1|AUP77876.1|893261_895448_-|hypothetical-protein	gnl|CDD|275036	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain. Species that include Porphyromonas gingivalis, Fibrobacter succinogenes, Flavobacterium johnsoniae, Cytophaga hutchinsonii, Gramella forsetii, Prevotella intermedia, and Salinibacter ruber average twenty or more copies of a C-terminal domain, represented by this model, associated with sorting to the outer membrane and covalent modification.	1.15716e-13
CP025791.1|AUP77862.1|870564_870915_+|50S-ribosomal-protein-L19	gnl|CDD|376502	pfam01245, Ribosomal_L19, Ribosomal protein L19.	4.83071e-55
CP025791.1|AUP77872.1|889852_891787_+|threonine--tRNA-ligase	gnl|CDD|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
CP025791.1|AUP77864.1|874061_876437_+|hypothetical-protein	gnl|CDD|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	5.74597e-21
CP025791.1|AUP77867.1|878651_880004_+|hypothetical-protein	gnl|CDD|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	1.56577e-57
CP025791.1|AUP77865.1|876441_877263_+|DUF4249-domain-containing-protein	gnl|CDD|379442	pfam14054, DUF4249, Domain of unknown function (DUF4249). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 279 and 365 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	5.52876e-23
CP025791.1|AUP77863.1|871775_873989_+|NADP-dependent-isocitrate-dehydrogenase	gnl|CDD|377178	pfam03971, IDH, Monomeric isocitrate dehydrogenase. NADP(+)-dependent isocitrate dehydrogenase (ICD) is an important enzyme of the intermediary metabolism, as it controls the carbon flux within the citric acid cycle and supplies the cell with 2-oxoglutarate EC:1.1.1.42 and NADPH for biosynthetic purposes.	0
CP025791.1|AUP77877.1|895555_896509_-|hypothetical-protein	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	8.33201e-18
CP025791.1|AUP77880.1|897660_898479_+|Cof-type-HAD-IIB-family-hydrolase	gnl|CDD|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	2.5928e-51
CP025791.1|AUP77868.1|880011_881472_+|transporter	gnl|CDD|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	3.75836e-24

Protein sequences

>CP025791.1|AUP77870.1|882542_883037_-|hypothetical-protein
MNIIIRSTLNTLQKSQYLLNNLDDAILSNASVPPYNSSIGSHLRHILDFYDCVLNMKDANVDLTARKRDTKIETCCDSAKAYLLSLMDNLANLDGNLDKSVSVIDDLGLGKVEMPYTLAALLAQANSHTIHHYAIINYILERLDVVIDDNDFGYNPTTPRKAAY
>CP025791.1|AUP81526.1|882361_882541_+|hypothetical-protein
MGISLGAMFLGPILIHIAFSNQEKPLYIPILIVAILICGLAVYLAFKGLNTILDSMFKK
>CP025791.1|AUP77869.1|881502_882321_+|N-acetylmuramic-acid-6-phosphate-etherase
MSFTKTTEQDSHYNHLEKMSINELLNSINNEDKTVPLAVEKALPEIEKLIEQIVNKLKSGGRLFYMGAGTSGRLGILDASECPPTFGVSHDLVIGLIAGGDSAIRKAVEFAEDSLTQGWEDLKAYNINSNDVVVGIAASGTTPYVIAALEACNKNNIVTGCITCNHNSPLSQTAQFPIEVIVGPEFVTGSSRMKAGTAQKLVLNMITTATMIQLGHVKGNKMVDMQLSNNKLVDRGTRMIMDELKVSEKEAQQLLSEYGSVRLAVKNYNNGN
>CP025791.1|AUP77868.1|880011_881472_+|transporter
MKKILPLILLFLPILSFSQSKNITLDEAIKIAKIKSPDYKVNLNRNQSSYWRFRNYKASFLPELKLDATLPEYRNSIRRITNDEGQDVFVNQNQLLLEGGLSISQSIPYSGGKLSISSNLERVELFGLNDNIGYSVIPFSVNYFQNSILYNPFKWDKKIEPLIYEESRRDFVENMERISVNTCQRYFALLKAQMQLEIAKLNLSNQDTLYQIAKGRFKMGKIAENELLQMELTLLNSKNTVTTNTVALKKTSQNLARYLELDTENLELDIPKDLPLFDVDIDKALSEAKSNRKAVIEFRRKRLEAEKNLAFEKGNNRLKLGIRANFGISQNGDDFNNLFNNYNKQQNVSVSIGIPIFDWGVSKSKRKMAEANLSLTNNNINQNKQEFEQEIYLHVLNWSNQRDFLFTSEKAKEVANKRYDISQKRYMLGRITITDLNIALQERDRAILQYLNSLQKFWQDYYILRQLTLYDFINNKKVEIDDILYD
>CP025791.1|AUP77867.1|878651_880004_+|hypothetical-protein
MIDKILLEKLKSNFNEAFWFIKTNKIRTFLTALGIIFGVASVITMLAIGKGAEKEILAQLELVGVNNIVITPIPDEENEDSKGNGENDNKTESKRFSKGLDILDATSIQKHIPSVKLVSPEIILNTYVINNGRQNPVKLIGISPTFLETSNINLENGKSFSDYQIKNALPVCIIGKKLEKKLFTGESALGKQIKVKDVWLQVIGIIEEKLISEKAQENLGIRDLNKDVYIPINTFLIRYKDRKITRSTKSRRNRNENGLKKRTPRGNYHQIDKLTVQVKNSNELKATAEVLSKMLKRRHNDVLDFEITIPIQLLKQQQKTKQIFNIVLSIIAGISLLIGGIGIMNIMLASVLERTKEIGIIRAIGATQEDVILQFLSESVLISVGGGILGIILGIIGAYIIEIVSGIETVLSINSIILSFFIAVMVGLIFGIFPAKAASNKKPIEALRSE
>CP025791.1|AUP77866.1|877403_878648_+|RND-transporter
MNKKKLAYIIGILILIIIGYTYFNSDTDKDVSLTTKVIKGNFLNEVYISGEAQSTSSKKINGPNSARRFNIYQIKIQDLVAEGTVVKKGDYIGKLDASEVNSKLNEAQLNLEKAESRYTQQKLDTTLSLKQERNTIKDLLFNIEEDKLELERSAYESPATIKSLEIKIQKTERNLKEKKADYLIKKRQANAKMAIAGTEVTKNKKRIEDLIKLQKEFTIYSDDEGMVTYVKEWNGNKKKVGSTITPWEPAIASLPDLSKMESKTYSNEVDIRKIKKGLSTKIGFDAFPDIELDGVVTSVANVGETKPGSDIKLFQVLIKLNGTNKNIRPGMTTSNKILIDQQNDVLMVPLEAIFAKDSISYAYVKSGLSINKKQIELGESNNEVVIVKKGLEENDIVYLSKPEGLEEKSITLLE
>CP025791.1|AUP77865.1|876441_877263_+|DUF4249-domain-containing-protein
MRKLHYILLLINFISILSCEDVINVDVNTSDPRLVIDASLNWTKGTNGENQTIKLSLTAPFFDTTVPPATGASVTVTDSDSNVFNFNEIGDTGIYINNSFIPVINNVYNLTVVYNNETYTATETLTSVAPIEFIEQKNDGGFTGEETEIKAYYTDPEGVDNYYLFEFIIPSENIQSLEVYDDEFTDGNQIFGFYSDDTLETGDELIVRVSGISERNFEFFNILLQQTDDEQGDPFQVQPVTVRGNCINQTNPNNFPLGYFRVSETSSATYTIE
>CP025791.1|AUP77864.1|874061_876437_+|hypothetical-protein
MKNQLLWFLFALCFNSILINAQQKFTLSGTVSEEKSNETLIGVNIIFPEIQTGTTTNEYGFYSITLPEGEYNVIISYLGFTTKSETIVLSEDITKNFSLTDELENLDEIVITENIEKLNIKTPQMSVNKLTSNTIKEIPVVLGEVDIIKAITLLPGVTNAGEGSSGFNVRGGAADQNLILLDEATIYNSSHLFGFFSVFNPDAIKDLRLYKGGIPARYGGRVSSVLDIYQKEGNSKKFHMNGGIGIVSSRLLAEGPLKKDKGSFLLGGRSSYAHLFLPLFDIDNIAYFYDLNTKLSYKLNENNNIYLSGYFGRDVFRIQDTFENTYGNAVLNFRWNHLFSDKLFSNLSLIYSDYYYDLKLDFVEFDWVSGIQNFNLKYDFKHYLTDKVKLQYGLNSIYYRFNPGEIKPTVETSGINPFKLIDKYAFENAVYFDTEHKLSDKLALSYGLRLSTFHRLGQDELNVYENDQAVVFNEDFQIYEKATPTGVENFKRSDVISSFFNLEPRASLAYKLSSRSSVKLSYNRMSQYLHLLSNTNSPTPLDIWTPSGKYVKPQLLDQYAIGYFKNFNDNNYSLELESFYKTVKNRIDYIDGANLIANDAIEQVILNGRARAYGLEVLLRKNEGKFKGWLAYTLSRSEQQTPGRTPAELGINNGNWYKTPFDKTHDISFTGSYDLNKKWKLNANFLFQTGQPATFPSGQYQFNGQNIPNFNGRNQNRLPAYHRLDFSFNYTPKPEKKKRWQSHWIFGIYNIYNRRNAASISFGQNTETRQNEATKLSIFGIVPSVSYNFKF
>CP025791.1|AUP77863.1|871775_873989_+|NADP-dependent-isocitrate-dehydrogenase
MAKIIYTKTDEAPALATRSFLPIVKAFVKSSGIDIETKDISLAARILAVFPDFLNEDQRVSDDLAFLGELAKKPEANIIKLPNISASIPQLKGAIKELQSQGFGIPDYPDTPKNDSEKEIKSRYDKVKGSAVNPVLREGNSDRRAPKAVKNYAKKNPHSMGAWTSDSKTHVATMASGDFAHNEKSVTLSEATSVTIEHIDSTGTATTLKDSFPLLKGEIIDATVMNKKALVSFLDEQVADARENNLLFSLHMKGTMMKVSDPIIFGHAVKSYYKDVFVKHGATLKELGVNVNSGVSNLLSKIEELPEDKRKEIEADITTVYQNGPAIAMVNSDKGITNLHVPSDVIIDASMPAMIRTSGQMWNAEGKLQDTKAVIPDSSYAGIYAATIDFCKKHGAFDPTTMGTVPNVGLMAQKAEEYGSHDKTFEIESNGTVRVIDASGNALLEHTVEEGDIWRMCQTKDAPIQDWVKLAVTRARASQTPAVFWLNENRAHDAELIKKVNTYLKDHDTNGLDLRILSPIDATIFTCERIIEGKDTISVSGNVLRDYLTDLFPILEVGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVQQLLEENHLRWDSLGEFLALAVSLEHFSEVNNTPKAKVLGEALDDATDKLLENRKGPSRKAGELDNRGSHFYLALYWAQELANQTKDDALKAEFTPIAKQLADNESAIVKELNDIQGKPTEIGGYYEPNELLINEVMRPSKTLNSILND
>CP025791.1|AUP77862.1|870564_870915_+|50S-ribosomal-protein-L19
MESLVKFVQDEFVTRKDLPEFSAGDTITVYYEIKEGSKTRTQFFRGVVIQRRGSGSSETFTIRKMSGSIGVERIFPINLPALQKIEVNKRGQVRRARIYYFRGLTGKKARIKERRH
>CP025791.1|AUP77871.1|888879_889101_-|hypothetical-protein
MFAAAKTGSVPGGKVHRNTLLVVVGKEVKIFFRKKNKKALRERKKGFIFAPAKRGNGVWERQKKVHRHIESTA
>CP025791.1|AUP77872.1|889852_891787_+|threonine--tRNA-ligase
MIHITLPDGSVKQFEANATPMDVAKSISEGFARNVISANFNGTTIETVTPLTTDGSLVLYTWNNDEGKTAFWHSSAHVLAQAIEELYSGAKLTIGPAIENGFYYDVDFGEHIVSEKDFKAIETKMLEIARGKHDFKMRSATKAEALELYKDNAFKTELIENLEDGTITFCDHSSFTDLCRGGHIPNTGIIKAVKVLSVAGAYWRGDENKPQLTRVYGISFPKQKELTEYLALLEEAKKRDHRKLGKELELFTFSRKVGQGLPLWLPKGAALRERLENFLKAAQKKAGYEMVISPHIGQKELYVTSGHYAKYGEDSFQPIRTPKEDEEFLLKPMNCPHHCEIYNSAQWSYKDLPKRYAEFGTVYRYEQSGELHGLTRVRGFTQDDAHLFCTPDQLDQEFKNVIDLVLYVFGSLGFENFTAQVSVRDPENPDKYIGDVENWEKAEQAIISAASDKGLDYVIEEGEAAFYGPKLDFMVKDALGRRWQLGTIQVDYNLPERFDLTYKGSDNELHRPIMIHRAPFGSMERFIAILLEHTAGNFPLWLMPTQAIILSISEKYEKYSEKVLNLLENDEIRALVDHRNETIGKKIREAEMQKHPFMIIIGEQEEKENKITVRKHGGEDLGMISIDEFSKIVKEEISKTLKSF
>CP025791.1|AUP77873.1|891825_892368_+|translation-initiation-factor-IF-3
MRRRNQPNRRVIQEDKHKINSKITAPNVRLVGDNVDIGVYSTRDALKIADEQGLDLVEISPNADPPVCKVMDYKKFLYEQKKRDKALKSKATKVVIKEIRFGPQTDDHDYQFKKKHAEKFLKEGAKLKAFVFFKGRSIIFKEQGQILLLRLAQDLEELGKVEQMPRLEGKRMTMFIAPKK
>CP025791.1|AUP77874.1|892508_892706_+|50S-ribosomal-protein-L35
MPKMKTKSSAKKRFKLTGTGKIKRKHAFKSHILTKKSKKRKLALTHDTLVHKSDEDNVKTMLRLK
>CP025791.1|AUP77875.1|892812_893157_+|50S-ribosomal-protein-L20
MPRSVNSVAKRARRKKVIKQAKGYFGRRKNVWTVAKNAVDKAMQYSYRDRRNKKRTFRALWITRINAGAREHGLSYSQFMGKLKANDIELNRKVLADLAMNNPEAFKAVIEKVK
>CP025791.1|AUP77876.1|893261_895448_-|hypothetical-protein
MKQKLYFLLLVLLCQCISFGQILDQSNFNPDSPDYEFAFGDKYHEAIGQSFVAGITGELSSIAIKLDDTNNSQSHNPPIGGTATLTIYQGHGYGGNVLGVTTFTTDGTENGEYNIPVFSQKIKQIKDSVYTFKLSGATGRVIANASPNAYFQGLLYTNSGENGSPSFDLKFKTFVTPPMEVNVSSQINVRCHGGKTGMATVVASGGTPPYMYIWSNGVTAASITDVEAGTYEVTVTDANNWEAKTSVTILEPTVLNLSIASQTNVKCNGGTTGSATASVTGGTSPYTYAWSNGATTSSITDVAAGIYEVTVTDDNGCTTTASTTITQPTALHANIGDQTNVKCNGGTTGSATASVTGGTSPYTYAWSNGATTSSITDVAAGIYEVTVTDDNGCTTTASTTITQPTALHANIGDQTNVKCNGGTTGSATASVTGGTSPYTYLWNNGATTASIVGVAAGIYEVTVTDDNGCTTTASTTITQPTALHANIGTQTNVKCYGGTTGSATISVTGGTLPYTYLWNNTATTASIVDVAAGVYEVTVTDNNECTTTTTTVTITEPMPLAPPNVITPVMYNQGDTASALTLDEEGVEVLWYTTESGGTGNIDAPVPNTETVGSTSYWVSSVSSDGCESEQRAEIVVTISGTLSTSKNDKGNDLALFPNPTSGTITIGNNQLLKEAQVTIYDLKGRALKKEALKNQPTVVDISDLSTGIYIFKIKTNDSEFVKRIVKQ
>CP025791.1|AUP77877.1|895555_896509_-|hypothetical-protein
MIVKSCIKMPFMKVDEERQMLYSDTPFVKGEFSYVELEPGLWIMNSTMLYKNNVSYRPIYDKMLESNYYCVTISLVENKFNADFYEFDNYKVESHSITFVKPATDFLFCHFKGSKEKMYILYFSETWAKNNIMNSPSISIGVKNLFSNKSIEVLNYIYDKKEFSGLIRNLSYYFNNSPKPNLLELKKITYHFFDLFFSSLEKRDTRESFKLSLKEQMKIEKIEHFLKGNLYNKFPGIEIISDKFNIAPSTLKRSFKLVYGTSVFKYFQNKQMDLALDYFKSHDTMVKDVSQIFGYENVSKFSSAFQKRHNMLPSEIK
>CP025791.1|AUP77878.1|896507_896705_+|hypothetical-protein
MSGEFAKNDRLKNPSLYVKKYCLDRLNQLLILSNTTIHDFWDWLKIENNTFIIDLNSYYFKFQKQ
>CP025791.1|AUP77879.1|896685_897108_-|secondary-thiamine-phosphate-synthase
MKFFQKEIRLKSYPRGFHLITDTILDVVPDIKSINMGQLQVFIKHTSASLTINENADATVRTDFESHFNKMVPENAPYYRHTYEGSDDMPAHIKSSLLGASVNIPITNGKLNLGIWQGVYLCEHRDYGGSRTIVVTAFGT
>CP025791.1|AUP77880.1|897660_898479_+|Cof-type-HAD-IIB-family-hydrolase
MNLSQVKLVVTDMDGTLLNSKHEVSTHFFDLFKKLKAHDIIFVAASGRQYCSMIDKLDTIKDDIIIVSENGGLAVKNDTTLLSTPISPDNLPEIVSLISTLDNTHPVFCTQYKAYAMSTSKPLVDLLSEYYTNYSIIDHVDAIEEDIFKIALYHEVSSEKHVYPHVKHLESKYKVKVSANHWVDISEDLANKGHAISLIQKAYDITEEETMVFGDYNNDLEMLKLGYFSYAMQNAHPNVKETARFETKNNDNAGVEYILEQLVNAKDALKAQ

Crispr_ID: CP025791_4

• CRISPR_ID: CP025791_4
• CRISPR_location: 1522935-1523063
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP025791_4

Consensus_repeat	Method
ACTGATCACTGAATACTGCTTATTCTCACAAAGGC	CRISPRCasFinder

spacers of CP025791_4

>4.1|1522970|59|CP025791|CRISPRCasFinder
ACAAAGACGCAAAGGTTAACCCTAATCTCTATCTATTATTACACGAACTCATTATAGCA

CRISPR arrays and Neighbor proteins around CP025791_4

CRISPR arrays

The CRISPR arrays of CP025791_4

>merge|CP025791|4|1522935-1523063|CRISPRCasFinder
ACTGATCACTGAATACTGCTTATTCTCACAAAGGCACAAAGACGCAAAGGTTAACCCTAATCTCTATCTATTATTACACGAACTCATTATAGCAACTGATCACTGAATACTGCTTATTCTCGCAAAGGC

>CP025791|4|4|1522935-1523063|CRISPRCasFinder
ACTGATCACTGAATACTGCTTATTCTCACAAAGGC	ACAAAGACGCAAAGGTTAACCCTAATCTCTATCTATTATTACACGAACTCATTATAGCA
ACTGATCACTGAATACTGCTTATTCTCGCAAAGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP025791.1|AUP78355.1|1527968_1528253_-|riboflavin-synthase-subunit-beta	unknown	unknown	unknown
CP025791.1|AUP78357.1|1528937_1529423_-|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl|CDD|234606
CP025791.1|AUP78351.1|1523144_1524170_-|endonuclease	unknown	unknown	gnl|CDD|197318
CP025791.1|AUP78348.1|1520047_1521634_+|signal-peptidase-I	unknown	unknown	gnl|CDD|182787
CP025791.1|AUP78342.1|1513531_1515682_+|methylmalonyl-CoA-mutase	unknown	unknown	gnl|CDD|236508
CP025791.1|AUP78354.1|1526102_1527962_-|DNA-mismatch-repair-protein-MutL	unknown	unknown	gnl|CDD|234630
CP025791.1|AUP78352.1|1524477_1525350_-|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl|CDD|366759
CP025791.1|AUP78346.1|1518658_1519276_+|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP78347.1|1519276_1519981_+|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl|CDD|234595
CP025791.1|AUP78350.1|1522351_1522660_+|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP78341.1|1512890_1513529_+|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP78360.1|1532201_1532498_+|DUF721-domain-containing-protein	unknown	unknown	gnl|CDD|377496
CP025791.1|AUP78358.1|1529438_1530212_-|hypothetical-protein	unknown	unknown	gnl|CDD|276809
CP025791.1|AUP78353.1|1525349_1526099_-|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl|CDD|223777
CP025791.1|AUP78356.1|1528271_1528502_-|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP78349.1|1521728_1522352_+|hypothetical-protein	unknown	unknown	gnl|CDD|378083
CP025791.1|AUP78343.1|1515791_1516877_+|chromosome-partitioning-protein-ParA	unknown	unknown	gnl|CDD|379293
CP025791.1|AUP78345.1|1517757_1518669_+|chromosome-partitioning-protein-ParB	unknown	unknown	gnl|CDD|275105
CP025791.1|AUP78344.1|1516986_1517751_+|chromosome-partitioning-protein-ParA	unknown	unknown	gnl|CDD|379293
CP025791.1|AUP78359.1|1530382_1531462_+|DNA-replication-and-repair-protein-RecF	unknown	unknown	gnl|CDD|234608

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP025791.1|AUP78357.1|1528937_1529423_-|6,7-dimethyl-8-ribityllumazine-synthase	gnl|CDD|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	1.60629e-67
CP025791.1|AUP78351.1|1523144_1524170_-|endonuclease	gnl|CDD|197318	cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily; uncharacterized family 2. This family of uncharacterized proteins belongs to a superfamily that includes the catalytic domain (exonuclease/endonuclease/phosphatase, EEP, domain) of a diverse set of proteins including the ExoIII family of apurinic/apyrimidinic (AP) endonucleases, inositol polyphosphate 5-phosphatases (INPP5), neutral sphingomyelinases (nSMases), deadenylases (such as the vertebrate circadian-clock regulated nocturnin), bacterial cytolethal distending toxin B (CdtB), deoxyribonuclease 1 (DNase1), the endonuclease domain of the non-LTR retrotransposon LINE-1, and related domains. These diverse enzymes share a common catalytic mechanism of cleaving phosphodiester bonds; their substrates range from nucleic acids to phospholipids and perhaps, proteins.	6.09784e-97
CP025791.1|AUP78348.1|1520047_1521634_+|signal-peptidase-I	gnl|CDD|182787	PRK10861, PRK10861, signal peptidase I.	4.25788e-12
CP025791.1|AUP78353.1|1525349_1526099_-|rhomboid-family-intramembrane-serine-protease	gnl|CDD|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	7.93276e-23
CP025791.1|AUP78354.1|1526102_1527962_-|DNA-mismatch-repair-protein-MutL	gnl|CDD|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	2.34886e-177
CP025791.1|AUP78352.1|1524477_1525350_-|rhomboid-family-intramembrane-serine-protease	gnl|CDD|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	2.58331e-22
CP025791.1|AUP78347.1|1519276_1519981_+|4-hydroxy-tetrahydrodipicolinate-reductase	gnl|CDD|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	3.85761e-50
CP025791.1|AUP78360.1|1532201_1532498_+|DUF721-domain-containing-protein	gnl|CDD|377496	pfam05258, DUF721, Protein of unknown function (DUF721). This family contains several actinomycete proteins of unknown function.	1.31473e-16
CP025791.1|AUP78358.1|1529438_1530212_-|hypothetical-protein	gnl|CDD|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.07419e-07
CP025791.1|AUP78342.1|1513531_1515682_+|methylmalonyl-CoA-mutase	gnl|CDD|236508	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.	0
CP025791.1|AUP78349.1|1521728_1522352_+|hypothetical-protein	gnl|CDD|378083	pfam08889, WbqC, WbqC-like protein family. This family of proteins are functionally uncharacterized. However it is found in an O-antigen gene cluster in E. coli and other bacteria suggesting a role in O-antigen production. Feng et al. suggest that wbnG may code for a glycine transferase.	5.46409e-39
CP025791.1|AUP78343.1|1515791_1516877_+|chromosome-partitioning-protein-ParA	gnl|CDD|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	2.07633e-71
CP025791.1|AUP78345.1|1517757_1518669_+|chromosome-partitioning-protein-ParB	gnl|CDD|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	8.31573e-80
CP025791.1|AUP78344.1|1516986_1517751_+|chromosome-partitioning-protein-ParA	gnl|CDD|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	1.24581e-88
CP025791.1|AUP78359.1|1530382_1531462_+|DNA-replication-and-repair-protein-RecF	gnl|CDD|234608	PRK00064, recF, recombination protein F; Reviewed.	1.66383e-94

Protein sequences

>CP025791.1|AUP78350.1|1522351_1522660_+|hypothetical-protein
MLQTFAHYGCHVFIPLLVALIWYKSRWKMAFLIMFSGMWIDIDHLLAAPVFDPNRCSINFHPLHSYYAIAIYLILLFPKKTRLLGLGLVIHIIADIVDCSFM
>CP025791.1|AUP78349.1|1521728_1522352_+|hypothetical-protein
MNIIIHPTYFPNIAHFVSMVNAKEIVFETDDNFLKQTYRNRTYIYGANGKLALNIPVIHSQKNRQKYRDVKIFNEEKWQSLHWKSLLSAYRTSPFFEYYEDELLPLFNTKADYILDFNFKCLEAIYNCLQLELNTTKSEVYEKTVEDKTDFRHLVNAKKESPQRFDNYTQVFGSKHGFIPNLSILDLLFNEGPNALNYLESQTITAQ
>CP025791.1|AUP78348.1|1520047_1521634_+|signal-peptidase-I
MTLSQWFIFILIIQIIHGLGTWKLYTKAGRQAWEAFVPVYNGIVLMKIINRSWWWVILLFLPIVNLIMFPVVWVETARSFGKNSHLDTFLAVVTLGFYNYYLNYATDVSYVENRSLQPKTSGGDWVSSILFAIVAATIVHTYFIQPFTIPSSSLEKSLLVGDFLFVSKFHYGARIPMTTVGAPMVHDTIPKLGTKSYLFNDNFEERKTSWVNKLQLPYLRLPGFEKIDRNEIVVFNQPADTLLDMNDFHPDRNYYKPIDKKTNLVKRCVGVAGDSLEVRNGYVYINGKQNVLPDRAHLQFSYHVQPKTNQFSPKYLKDRYDITDGFGIMPNTNNTYYFSAISDEALAKFKNHPNVAGITPNKREKGVRDPNIFPHDPNYKWNVDFFGPLYIPEEGKTIDINLEVLPLYKRVITEYEGNDLRVEGNQIFINGEVASTYTFKQNYYWMMGDNRHNSIDARAWGFVPFDHVVGKPVFIWMSWDGLKNPRLERFFTTVSGSGKATSYFIPFLVLLFGWIGFNKWRKHKKAKA
>CP025791.1|AUP78347.1|1519276_1519981_+|4-hydroxy-tetrahydrodipicolinate-reductase
MNIALLGYGKMGKTIEQIAIKRGHNIVLTIDKGDNDYDITKADVAIDFSIPTVAFNNISNCINNQVPVVSGTTGWLDKYDEAVALCKDKKGAFIYTSNFSLGVNIFFELNKTLAKMMSTLKQYNVSMEEIHHTQKLDAPSGTAISLANDIISKHAGYDNWKLDESGETTIPIVAKRIEDVPGTHTVNYESEVDTINIEHIAHTRQGFALGAVIAAEWIAGKTGVFTMNDVLNIG
>CP025791.1|AUP78346.1|1518658_1519276_+|hypothetical-protein
MPNKSLIVSAIAFLFCFSTIAQEKEKKRKQLPKEVVIDSIIEVKDPINPLSPAKAAFYSAVLPGLGQAYNKKYWKIPLVYGAIGTGIYFYVTNDREYNRYRDAYKRRLAGFEDDEFFFSADGTTRLTSPRVTTESLERGQKFYRKNKEVALLVTIGLYALNIIDANVDAHLLQYNVDDKLSLAPHYKFNEFDATSNLGLTLNFKF
>CP025791.1|AUP78345.1|1517757_1518669_+|chromosome-partitioning-protein-ParB
MAKATKKQALGRGLSALLQDPDNDIQSVQDKNADKVIGNIVELEIDSIEVNPFQPRTNFSEESLRELASSIKELGIIQPITVRKLEFNTYQLVSGERRYRASKLIGLKTIPAYIRIANDQESLEMALVENIQRQDLDPIEIALSYQRLIDEIQLTQEQMSERVGKKRSTIANYLRLLKLDPIIQTGMRDGFISMGHGRAIINIEDTTIQLDIYKKILANKLSVRETESLVRNYNDTQEVEVSPKKETVDETPKFIKKGITTFSEYFGHKIDVKVSKNGKGKITIPFHSEEDFNRIKKLVEGAK
>CP025791.1|AUP78344.1|1516986_1517751_+|chromosome-partitioning-protein-ParA
MGKIIAIANQKGGVGKTTTSINLAAALGVLEKKILLIDADPQANATSGIGIDIESIEIGTYQLLEHSNIAKDTIMKTESPNLDLIPAHIDLVAIEIELVDKESREYMLKKALKDIKDDYDYILIDCAPSLGLLTLNALTAADAVVIPIQCEYFALEGLGKLLNTIKSVQKIHNPGLDIEGLLLTMYDARLRLSNQVVEEVQKHFNNMVFKTIIQRNVRLSEAPSYGESIINYDASSKGANNYLSLAKEIINKNT
>CP025791.1|AUP78343.1|1515791_1516877_+|chromosome-partitioning-protein-ParA
MNKIIAIANQKGGVGKTTTSINLADALGILDKKVLLIDLDPQANATSGVGLVPSDIKYSSLSFFTNTFKVENNIVRPDSAHFDFIPSNIRLASIEINRSKNVDLFMLKTALSKVIKDYHYIIIDCSPSFGLLTLNALTACHSVIIPVQCEFYALEGLSKLLITIKSIKKSSNPDIDIEGLLITMYDSRTSISNQLRKELIKHFESMVFNTVIQRNVKLREAPSYGLSIIKYNPESVGTENYLNLGSELISRSQKTETDSEPEKDLSKILTHDTEDVDFIIKGHTNANSEKKDEDYGHLLGLKRDEINNVLGFSYNDVHSNVWMYRTSSSFSIIKKNYLYLYFENEKVANYKLTTFKMNTTQ
>CP025791.1|AUP78342.1|1513531_1515682_+|methylmalonyl-CoA-mutase
MRKDLQHIEINSEQKKSNSETLDFFSTAEGIKVKSSYTKDDIKDLEHLGFVAGIAPNLRGPYSTMYVRRPWTIRQYAGFSTAEESNAFYRRNLAAGQKGLSVAFDLPTHRGYDSDHERVVGDVGKAGVAIDSVEDMKILFDQIPLDKMSVSMTMNGAVLPIMAFYIVAAEEQGVKPEQLAGTIQNDILKEFMVRNTYIYPPTPSMKIISDIFDYTSKNMPKFNSISISGYHMQEAGATCDIELAYTLADGLEYIRKGLAAGMDIDTFAPRLSFFWAIGMNHFMEIAKMRAARMLWAKLVKQFNPKNPKSLALRTHCQTSGWSLTEQDPFNNIARTTIEAAAAAFGGTQSLHTNALDEAIALPTDFSARIARNTQIYLQEETKITKTVDPWAGSYYVEKLTHDIAQKAWALIEEVEDLGGMTKAIEAGIPKIRIEEAAAKKQARIDSGQDIIVGVNKYRLEEEDIISTLEVDNQTVRNQQIERLDQIRANRDPEKVNKALSKLTEAAKFSLNSEDAEFQAGKNLLALAVEAARERATLGEISDALEAVFGRYKAQIKSFSGVYSKEIKNDESFKKAQQLADIFAEQDGRRPRIMIAKMGQDGHDRGAKVVATGYADVGFDVDIGPLFQTPQEAAKQAVENDVHVLGVSSLAAGHKTLVPQVINALKAYGRDDIMVIVGGVIPKQDYQYLFDAGAIAVFGPGTKISDAAIKILQILID
>CP025791.1|AUP78341.1|1512890_1513529_+|hypothetical-protein
MTKNFNFITLFLLVLTLLNCKNENKFSEYKYADYNIVLTCDDFNSKLYHEALYSFENDILKFYSKTNKNISQTQAYSQFVRTTVYGRTKFEDIVSAHTLKVFEALKSENILWNVNNVKSHLNYNSPIVSCIASKIQDAALKTTFNSLVSTNSMSPKLFGAPLMSKYRSAIKDKYLATYIALDLFYAKLFDVDFSKVNLNKPESKVDFNKKPQ
>CP025791.1|AUP78351.1|1523144_1524170_-|endonuclease
MRKLSFINKIIYLVNVVAAILLLFSFALPFLPPKTFSLLSVLNLGVSFLILINLLFFLYWLIKLKRQLFLSCLVLLIGYISFGSLYKFSSSKVIENPNNIRVMNYNVRLFNLYNWIPEKQVESKIVDFIKEEKPEILSIQEYHPHENIDLSFFKYKYEKLSGKKTKYGQAIFSQFPIVNSGSIEFPKTGNNAVFADVVKGADTIRVYNIHLESLHINADVETLKNEDSERLFNRIGATFTMQQFQTELFLKHKEKCSYKMIVCGDFNNTAFSYVYRKIKGDLNDTFREAGSGFGRTYDFKFFPVRIDFIFSDEAFAVNGFKTFNDRYSDHYPIMATLSLDD
>CP025791.1|AUP78352.1|1524477_1525350_-|rhomboid-family-intramembrane-serine-protease
MTSLSQDIKDKLSRLNVLEKIIGINVAIYIIGLFLKSNLGWLELPSDFSDFIVQPWAIITYAFLHYDIWHLFFNMLWLYFIGRIFLNLFNPKMALNIYFLGGIAGGLLYMLCYALFPDALGTNSRLLGASGAVRALLIFLCAYMPNKELRVFTFNLKLWYVGVAIVILDVIGVFSGIKNPTGGNSGGYLAHLGGVLLGYLYAKQLLKGQDIGKGFERLMDAVFGVFKSSKKGPLKTVHKNKSKVGGYTRADFHEFNNQKKIDVILDKISKSGYESLTAEEKEFLFRAGKK
>CP025791.1|AUP78353.1|1525349_1526099_-|rhomboid-family-intramembrane-serine-protease
MMRISETVKHLLIINVIMFIGTMFIGKGILFYDWFAMHFPKNEAYQPWQILTHMFMHGGPWHLALNMFGLWMFGTPVEQVLGQKRFLFIYFSAGLGAVALQVGEYYFGFLPTFNELLASGLSESEILQMLSDGKTQGRVSVIQHNYLQEIYPFYKSTMVGASGCIMGILAAFGMMNPNAELMMIFLPIPIKAKYFIPALIAIETILGFTGQSIFGGTSIAHFAHVGGAITGFLIMWYWKKTQFNRNRWN
>CP025791.1|AUP78354.1|1526102_1527962_-|DNA-mismatch-repair-protein-MutL
MADIIQLLPDHVANQIAAGEVVQRPASVVKELLENAIDAGALTIKLIIKDAGKTLIQVIDDGKGMSETDARLSFERHATSKIRTADDLFQLDTKGFRGEALASIAAIAHVELKTKQEGDDVGNVIVIEGSNVVSQEVVVTPKGTSVSVKNLFFNIPARRNFLKSNTVELRHVIDEFQRVALAHPDISFALYNNGSESFNLPVSNYRQRIVNIFGNKTNERLVPVEEETEVLDISGFVGKPEFAKKTRGEQYFFVNNRFIKSAYLNHAIASAFDGLLKNGTHPSYFLNLTVDPQTIDINIHPTKTEIKFDDEHTLYALLRSAVKHSLGQFNIAPVLDFERDPNLDTPYDYKNNTANVPKIEVDRSFNPFQDDTQPKTRTTTTTTYKKEPAANWESLYVGLESKGTQTDQDFSEVHFESEESTPSIFDDEKQVESGNTTHQLHNKYIVSTIKSGMLVIDQHRAHQRILYEELLKNMTVKEAVSQQLLFPLQLHFSAQEITIVKQLKADLENTGFVFSNIDEESVEITGVPVSVPESEVSIILEQLMSDVENEVPDSSFSATDLLAKSMAKSLAIKTGQSLQKDEQEHLVNKLFACKEPNISPTNRSTFITLSVDELDKKFL
>CP025791.1|AUP78355.1|1527968_1528253_-|riboflavin-synthase-subunit-beta
MGILKLRKNKKFSYKPRYFDDKGEGNPFEIKHKFDEHRKTVGGNTGLKTKFNNAIDDLKNNPDAEVNRRVLIIIAILVLIFLFIIDFDLSIFFS
>CP025791.1|AUP78356.1|1528271_1528502_-|hypothetical-protein
MFKQRKNKAFNYQPRFSNENENDSSSSDTGTTDFVSKWKEVRGNKRKVRGGMSFKMLVLVLVLLLICMYILDSKFG
>CP025791.1|AUP78357.1|1528937_1529423_-|6,7-dimethyl-8-ribityllumazine-synthase
MATVNKNLSDYDKTTIPNASKFRFGIVVSEWNHTITEGLYKGAYDTLIAHGVLPNNIIRWDVPGSFELIYGSKKMQEQMVNAVIAIGSVIQGETKHFDFVCEAVSQGIKDLNVTRETPVIFCVLTDNNMQQAIERSGGKHGNKGTEAAVAAIKMAELRKNS
>CP025791.1|AUP78358.1|1529438_1530212_-|hypothetical-protein
MATYSKRGYKPKNKVEKEQNIEEGSTTAEVFNTLDETASKTEAFVEKNQKYIFIIIGVVAIIVLGSLGYKEFIGKPKQMAAMNDMFQAQKYFDQAVTGTAKDSLYNLALSGGEGKFGMLDIIEEYSGTPSANLASYYAGTAYLRLKDYKKAIEHLENFKSEDEVLAPLAKGNIGDAFVQLNQSEDALGYYEEAAEMRNNEYTTPMYLFKAGTIALELGKADKALANFERIKEDYPNSTEASKVDVFIGKAQVLADKY
>CP025791.1|AUP78359.1|1530382_1531462_+|DNA-replication-and-repair-protein-RecF
MILKSLSLLNYKNFDSKSFTFNDKINCIVGNNGIGKTNVLDAIYHLSFGKSYFNPVATQNIRHHEDFFVINGDYEKDEKNEKIVVSLKRGQKKVIKRNAKIYEKFSDHIGFLPLVIISPADRDLIIEGSTTRRKFIDSVISQSDKTYLSHLINYNKILAQRNALLKYFALNHTFNNDTLEVYNNQLTDYGTAIFEKRDAFLKTFIPIFKARYEAISSGNESVDLVYHSDLFDGKLNTLLQNTINKDKALQYTSVGIHKDDLHFNIEGHPIKKFGSQGQQKSFLIALKLAQFDFIKTQSGVNPILLLDDIFDKLDEQRVAQIIKLVDDENFGQLFISDTHAERTEAAVKQVHQSYEIFKL
>CP025791.1|AUP78360.1|1532201_1532498_+|DUF721-domain-containing-protein
MAKRNNEHISISDALKEFVEANKLEKGLNKVNVADAWTKLMGNGVNNYTASVNLERDTLYVQLTSSVLREELSYGKQKIIDMLNEDLGKEIIKKLVLR

Crispr_ID: CP025791_5

• CRISPR_ID: CP025791_5
• CRISPR_location: 1871424-1871514
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP025791_5

Consensus_repeat	Method
TTTTCGTAGTCTCAGGCAGACTC	CRISPRCasFinder

spacers of CP025791_5

>5.1|1871447|45|CP025791|CRISPRCasFinder
CCTTCGACTGCGCTCAGGGTAAACTTCTCGTCTGTCTTTCGACCT

CRISPR arrays and Neighbor proteins around CP025791_5

CRISPR arrays

The CRISPR arrays of CP025791_5

>merge|CP025791|5|1871424-1871514|CRISPRCasFinder
TTTTCGTAGTCTCAGGCAGACTCCCTTCGACTGCGCTCAGGGTAAACTTCTCGTCTGTCTTTCGACCTCTTTCGTAGTCTCAGGCAGACTC

>CP025791|5|5|1871424-1871514|CRISPRCasFinder
TTTTCGTAGTCTCAGGCAGACTC	CCTTCGACTGCGCTCAGGGTAAACTTCTCGTCTGTCTTTCGACCT
CTTTCGTAGTCTCAGGCAGACTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP025791.1|AUP78604.1|1854698_1856366_+|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl|CDD|225183
CP025791.1|AUP78620.1|1886389_1886989_+|ribonuclease-HII	unknown	unknown	gnl|CDD|260003
CP025791.1|AUP78608.1|1860011_1861193_+|hypothetical-protein	unknown	unknown	gnl|CDD|225193
CP025791.1|AUP78621.1|1887062_1889498_+|ribonuclease-HII	unknown	unknown	unknown
CP025791.1|AUP78611.1|1864505_1865153_+|DNA-binding-response-regulator	unknown	unknown	gnl|CDD|225107
CP025791.1|AUP78610.1|1862368_1864516_+|histidine-kinase	unknown	unknown	gnl|CDD|226951
CP025791.1|AUP78616.1|1877656_1878532_-|hypothetical-protein	unknown	unknown	gnl|CDD|275342
CP025791.1|AUP78603.1|1854262_1854562_+|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP78615.1|1876262_1877648_-|hypothetical-protein	unknown	unknown	gnl|CDD|372921
CP025791.1|AUP78618.1|1883830_1885039_-|hypothetical-protein	unknown	unknown	gnl|CDD|226235
CP025791.1|AUP78613.1|1873349_1873604_-|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP78612.1|1865169_1867623_-|helicase	unknown	unknown	gnl|CDD|350795
CP025791.1|AUP78606.1|1857716_1859144_+|transporter	unknown	unknown	gnl|CDD|224455
CP025791.1|AUP78617.1|1880048_1883675_-|SusC/RagA-family-TonB-linked-outer-membrane-protein	unknown	unknown	gnl|CDD|274948
CP025791.1|AUP78619.1|1885187_1885805_-|hypothetical-protein	unknown	unknown	gnl|CDD|274357
CP025791.1|AUP78607.1|1859304_1859838_+|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP78605.1|1856358_1857717_+|biotin-attachment-protein	unknown	unknown	gnl|CDD|130902
CP025791.1|AUP81564.1|1878543_1880028_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	unknown	unknown	gnl|CDD|373012
CP025791.1|AUP78614.1|1874029_1875994_-|hypothetical-protein	unknown	unknown	gnl|CDD|379481
CP025791.1|AUP78609.1|1861643_1862066_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP025791.1|AUP78604.1|1854698_1856366_+|ABC-transporter-ATP-binding-protein/permease	gnl|CDD|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	3.76858e-65
CP025791.1|AUP78620.1|1886389_1886989_+|ribonuclease-HII	gnl|CDD|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	7.59956e-103
CP025791.1|AUP78608.1|1860011_1861193_+|hypothetical-protein	gnl|CDD|225193	COG2311, COG2311, Predicted membrane protein [Function unknown].	1.57965e-34
CP025791.1|AUP78611.1|1864505_1865153_+|DNA-binding-response-regulator	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.22453e-52
CP025791.1|AUP78610.1|1862368_1864516_+|histidine-kinase	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.62271e-28
CP025791.1|AUP78616.1|1877656_1878532_-|hypothetical-protein	gnl|CDD|275342	TIGR04549, LP_HExxH_w_tonB, substrate import-associated zinc metallohydrolase lipoprotein. Members of this family are lipoproteins with the typical zinc metallohydrolase HExxH motif and additional similarities to a better-documented zinc peptidase family, pfam06167. The seed alignment begins immediately after the lipoprotein motif Cys residue. Up to five members of this protein family occur per genome, in the context of certain gene pairs related to RagA and RagB, or to SusC and SusD. Those gene pairs, like the present family, are restricted to the Bacteriodetes, may number up to 100 pairs per genome, and are linked to TonB-dependent uptake of biopolymer-derived nutrients such as glycans. A possible function for this lipoprotein is to hydrolyse larger molecules to prepare substrates for import and utilization. [Unknown function, Enzymes of unknown specificity].	1.98071e-99
CP025791.1|AUP81564.1|1878543_1880028_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein	gnl|CDD|373012	pfam14322, SusD-like_3, Starch-binding associating with outer membrane. SusD is a secreted polysaccharide-binding protein with an N-terminal lipid moiety that allows it to associate with the outer membrane. SusD probably mediates xyloglucan-binding prior to xyloglucan transport in the periplasm for degradation. This domain is found N-terminal to pfam07980.	5.66166e-35
CP025791.1|AUP78615.1|1876262_1877648_-|hypothetical-protein	gnl|CDD|372921	pfam14135, DUF4302, Domain of unknown function (DUF4302). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 344 and 443 amino acids in length. There are two completely conserved residues (R and L) that may be functionally important.	6.42798e-25
CP025791.1|AUP78618.1|1883830_1885039_-|hypothetical-protein	gnl|CDD|226235	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms].	3.01248e-19
CP025791.1|AUP78612.1|1865169_1867623_-|helicase	gnl|CDD|350795	cd18037, DEXSc_Pif1_like, DEAD-box helicase domain of Pif1. Pif1 and other members of this family are RecD-like helicases involved in maintaining genome stability through unwinding double-stranded DNAs (dsDNAs), DNA/RNA hybrids, and G quadruplex (G4) structures. The members of Pif1 helicase subfamily studied so far all appear to contribute to telomere maintenance. Pif1 is a member of the DEAD-like helicases superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	3.87994e-47
CP025791.1|AUP78606.1|1857716_1859144_+|transporter	gnl|CDD|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.29114e-14
CP025791.1|AUP78617.1|1880048_1883675_-|SusC/RagA-family-TonB-linked-outer-membrane-protein	gnl|CDD|274948	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family. This model describes a distinctive clade among the TonB-linked outer membrane proteins (OMP). Members of this family are restricted to the Bacteriodetes lineage (except for Gemmatimonas aurantiaca T-27 from the novel phylum Gemmatimonadetes) and occur in high copy numbers, with over 100 members from Bacteroides thetaiotaomicron VPI-5482 alone. Published descriptions of members of this family are available for RagA from Porphyromonas gingivalis, SusC from Bacteroides thetaiotaomicron, and OmpW from Bacteroides caccae. Members form pairs with members of the SusD/RagB family (pfam07980). Transporter complexes including these outer membrane proteins are likely to import large degradation products of proteins (e.g. RagA) or carbohydrates (e.g. SusC) as nutrients, rather than siderophores. [Transport and binding proteins, Unknown substrate].	5.89716e-175
CP025791.1|AUP78619.1|1885187_1885805_-|hypothetical-protein	gnl|CDD|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	8.75739e-26
CP025791.1|AUP78605.1|1856358_1857717_+|biotin-attachment-protein	gnl|CDD|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	6.9895e-23
CP025791.1|AUP78614.1|1874029_1875994_-|hypothetical-protein	gnl|CDD|379481	pfam14121, Porin_10, Putative porin. This family of membrane bet-barrel proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 655 and 722 amino acids in length. SRI_1264 is identified by Gene3D as a membrane bound beta-barrel. These sequences are putative porins.	0

Protein sequences

>CP025791.1|AUP78612.1|1865169_1867623_-|helicase
MTENRELDLAWNFVNNTDRNVFLTGKAGTGKTTFLRKLKMKSLKRMVVVAPTGVAAINAKGVTIHSFFQMPFGPLLPDADSSTNSGFNRKFSKNKINIIKSLDLLVIDEISMVRADLLDGIDRVLRRFKNRNKVFGGVQVLMIGDLQQLSPIIKEDEWELLKSFYKNGFFFSSQAYMQCDAITIELNHIYRQDNPKFIKILNEIRTNALTQASAEELNKRFQPDFVPDEKEGYISLTTHNNKAEHTNNAELDKLKTEERTYNAVVEGKFPEYAYPNKEELTLKVGAQVMFIKNDSSTEKRYFNGKIGKVIHLDKSEVIVHCQEDDFNIVTTPEVWENINYTVDKETKAITENKIGSYTQMPLRLAWSITIHKSQGLTFEKAIIDAQGAFAHGQTYVALSRCKSLEGLVLKSKISSNHIISDNQVLSFSKTAEENQPDENILKASQSEFQLNLIAELFDFYKFLHPIGRILDIYYKNRTSIEGQVEAPLNTMKSCVTELLKVANAFKAQLKTLSETLEAPESSPEIQDRFIKAVGYFVEQTRLHLSSAAKTFGFTTDNKTIEKDIIKQFDTIEELLASKLLYFEGLTTGFNVTTFLELRAKSVFLAKEKPKKPRKTVIDGTTNLELFELLRELRNEIAKQEDLAHFQVFTQKALYDMCETLPTNKQELIQVNGMGKVRVEKYGNAILEVIRGYCDEHDIETSAASEIDFFEDPKPKPKRQKGDTKKISLDLFKAGKSPDAIALERDLNVNTVIGHLASFISLGDVKITDLMPEAHYKELKSIIPKTKFENLSDLKHQIDDKYTYGELRLVLDSLNNQK
>CP025791.1|AUP78611.1|1864505_1865153_+|DNA-binding-response-regulator
MKYNLIIVDDHKMFLDGMLSILNLESEYNILLTATKGEQIVKYLEINPDERVDLIITDISMPELDGIALNKIVKEKKKNIRTLIVSMHNNAEMIDNLIEHDADGYVPKNAEKNEFLVAIKTILKGEKYFSKEIKDIYIENKFSKKKQEEIKLTQREIDVITLIAQEYTTQEIADKLFLSKHTIESYRKNLIAKLNVRNLAGLTKYALKMSYIKNE
>CP025791.1|AUP78610.1|1862368_1864516_+|histidine-kinase
MLRFLRKLVVINLYTMSLFLLAQANGDVKPHIKKSIDIEYKEKEKIDQAFNLLNNNKEKEAREIAHNLLLKRKLDTRSKTNANLLLAHYFNNRELIDSSLFYANQTLKVGALVENDSLKDRLYGLVYNLFAINYKKKGLYEESSKWHIKGIDISQKYNETNLYYTHTHGLANAYREMGNYSRSLKLFKECLTYKGDKEIIYGSLINIGTIYSKLKDYKSSNEYYQKALKLVREDERYSALVVIKINMATNYQDQNDFNKAITLYNEAIEIAEKKEYKQLALIARLKIGSIYVDLENYKNAEMVYSSGLHDAVELGYLNEEKIIYDNLKDIYIEQHDYKKALHCATQSFRVKDSINKLQKDKEIDELEVQYKTLQKEKEIKVLQVENYNRKLELKNQDEAIKNLKLQQEVEKKENENQILSFQNASEKKLNEIALLKKDQEIQETELIREKSIKNTILYSFLILLIPIIGLLIIYYQKLQTQSELNKKQEEISEQKISSLIKDQELKVIKASIKGQDKERKRIAQELHDSIGGNLAAIKLKLNNSINNNTETGYLSTINNQIDDTYELVRSLSHNLIPKKFIENKFCDVLEEYINSIWGSNSAFTVYPRKKVDLLDENLQIEIFKIIQELTTNTIKHAKANYIELQINLIENELNIMFEDNGIGFNLKNNKEGIGFKNIKNRLNKFHGTLHVDSRINRGTIINIETPTLTKNKNEV
>CP025791.1|AUP78609.1|1861643_1862066_+|hypothetical-protein
MTWGITLILLSIIAVPSLLLAKKPNAKELLAKIEPYQGWIGFGFFFWGVWGIISSILSIGSLTLYPVWWITLLAGNIIEAVLGFMLGFGLINKFVLSKSEAGAEKGMRLREKLAPKQGKLGILGLIVGIWIIVASFLPAF
>CP025791.1|AUP78608.1|1860011_1861193_+|hypothetical-protein
MKRERIVIVDALRGIALLLIVLIHYVEHFDFFKQPEINFLFSNNFDSQVMHATFLLISGKAYSIFALLFGLSFYIQMNNKESKGINYSTKFFWRMLILLVIGFIHSLFYRGDILHIYALLSLPVIPLYKVKTKYLWLIIVLLIIQIPFLYHLVQTFITPNYEYVEPLTGHFAIGNDIYATGSLYDVMSYNFWKGRITAWAWTFNNGRYLQLIALFIVGIILGRKRVFEQIDACKKGIKTTLITSLILYAILFFVKKELLTMDFSAMQKQFMGTLLTSFINLCITSTIICLTILVYNKFKHAFIFKLFSAYGKMSLTNYVAQALFGVIFFYGFGLAMYRYLGSTWSLILGGVIFFVQAYISKYWNKNYYYGPLEWLWRCATDLDFNVKFKRKTV
>CP025791.1|AUP78607.1|1859304_1859838_+|hypothetical-protein
MDDKIEIELSKTKIVLLLIGAMIFVAIGLLFIVSPEKFALSQFRNPHVLRIIGIASAGFFGLCLVFGARKLFDSKIGLTIDQNGINDNTNATSIGLIEWRDITGVKTVQVASTKTLMVLTNNPEKYIDRAKNAISKRAMKANSKMYGSPLSIISSSLKIKHNDLEKLIITELQKRGK
>CP025791.1|AUP78606.1|1857716_1859144_+|transporter
MSPRTNYIATLVLCVLVQIGFAQENSNSLERILTFEEYLGYVKQHHPLLKQANLQLSIGEANLLRARGGFDPKIEIDYNRKKFKKTEYYDQLNATFKIPTWYGIEFKANFEENMGAFLNRNQTLPDGGLYAAGVSFSVAQGFLINERMAMLKKARFFVNQTKAERDLLVNNLVFEASKAYFKWVEAHNEQTIYSRFLNNAEVRFQGVIRSVETGDKAAIDTIETRITIQNRRLNLEAARLKMRKAALKASNYLWLNDIPLEIQETVLPESPNNSVIESSLYLEEVMNDLEMLTNHPKLRSLDAKVESLKVDRFLKRNKLLPKLDLQYNFLTPDVDQFNSFNTANYKAGLNFSFPLFLRKERGNVRLANLKLQDANFERVSTSLSLQNKITAINTEINSLQKQNVLINNIVKDYETMLRAEERKFQLGESSVFLINSREQKLLEANLKANTLQIKSLNANASLYNALGIPEPAMIP
>CP025791.1|AUP78605.1|1856358_1857717_+|biotin-attachment-protein
MLNISHNQLNKKVTLEGYGAFEKAFKSRHFRIFNKLLLIFGIIAILILFLPWTQNVTGKGFVTTLTPDQRPQTIQSPIPGRIEKWYVREGDYVKKGDTILFISEIKNEYLDPKLVERTKAQRDAKSRSVQSYHGKITALGTQISALKQERELKLQQSKNKLIVSRLKVKSDSIDLQAARTNMMIAERQFNRTQTLQKEGLKAVTDVEGKRLKLQETQAKLISQENKLLSSRNSVINAQIEISRIEASYADKIAKASSDRFTAESSQFEAEAEVSKLDNASANYEIRNALYYITAPQNGYINKALRAGLGETFKEGEKLVGIMPANYDLAVETYVNPIDLPLIHPGENVRIQFDGWPAIFFRGWPNASFGTYAGKIVAIETFISENGKFRVLIAPDKDEETWPKGVRVGSGAFTIALLENVPIWYEIWRQFNGFPPNYYTPDNEQQTKAKTKK
>CP025791.1|AUP78604.1|1854698_1856366_+|ABC-transporter-ATP-binding-protein/permease
MKEPMSPWQRFIGLLQLDKRDIRQIFYYAIFAGVVALSLPLGIQAIINLIQGAQISSSWVVLVVLVTLGVAFQGGLQLMQIRILESIQQKIFTRSSFEFVYRFPKIKVSELSNYYPPEIANRFFDTLTVQKGLSKLLIDFPAAVLQILLGIMLLSFYHAFFIIYGILLLALIYIVFRFTAKKGLETSLEESKNKYKVAHWIQEIARSLVSFKLSGKTDLAMERNDKLTTAYLEARESHFKILITQFMQMVGFKILVTAGLLIIGGLLVLNQRMNIGQFVAAEIIILLVIGSVEKLITGLETFYDVLTSLEKIGQVVDKELEQQEGIDPFATIQPLKIELEHVYYTSSDNIDILKDISLTIGEKERLLLDGTAGSGKSTLLKLLSGLIPPTKGSLYVNETSIKGIWPNRYRSKIGQILPEQHPFEGTILENITFGDTLISRDRVNEVLKNIGLLPFIKEQPNGLNTMLYPEGQQIPYTISKRILLARAIVHKPQLLLLKDPLEHFETQDAQTIVEYLTDSKHPWTIIVSSRNALWRKYCTKTIKLNKGTLKTNNNA
>CP025791.1|AUP78603.1|1854262_1854562_+|hypothetical-protein
MKSTTATKTEQKINLIDGYFTISEAADIINSILTVKINFHKLQRLSKTEGNEKNKCEYDNSRIDELINEQQTAKAFFKNVGNLGKKLKINSTIHMTLEN
>CP025791.1|AUP78613.1|1873349_1873604_-|hypothetical-protein
MKKLFGTKKGCMFAAAKTGSVPGGKVHRNTLLVVVGKEVKIFFRKKNKKALRERKKGFIFAPAKRGNGVWERQKKVHRHIESTA
>CP025791.1|AUP78614.1|1874029_1875994_-|hypothetical-protein
MKKLLLAFFSISLFSQLTAQVAPKNSGITPPRTQSLKASDTITGGAGKKSSKDKKAKIQDYLIISRENDTTFVDTTLTIQKEYKFNYLRRDNFGLMPFSNLGQTYNSLTYNFRNTGLMPIFGARARHFNYMEIEDINYYRVPTPLTELFFKTAFEQGQLVDAFFTVNTSPRLNFSVAYKGLRSLGKYQNILTSTGNFRFTTNYRTKDNRYNIRGHIVMQDLLNEENGGLLDDPSIENFETGSEEFLERSFLEVNFQDAENIIKGKRFHLEHDYKIVKKKDTLSKNKLSLGHIMSFEDKYYQYDQTAANTFFGESYRSRNLRDRATLENFYNQVQLNYSNNTIGDLQFNISNNNYNYGYDRLVVQNGDTITNRLKGDIFSAGGKYHKQYKGFDLEGEAGINISGDFEGNFLKAKASFKLNKDFSATASINHSSKVPNYNTLLYQSNYIDYNWQNNFNNVETEQLAFQLKSDKIVNISADYSTISDFVYFKKEETSGQVKAFQNNNTINYLRVRLDKEIRVGKFALNNTILYQNVNDNDSILNVPEFTVRNTLYYSSHLFKKAMYLQTGVTFNYFTKYYMNAYNPLLAEFYVQTERQYGEFPRLDFFINAKIRQTRIFLKAEHFNSSFTGYDFYSAPNNPYRDFIVRFGIVWNFFM
>CP025791.1|AUP78615.1|1876262_1877648_-|hypothetical-protein
MKRIYINYWIICLMFVGVLSCSDDDSETLFSETPTERIEQRNSELLNLLLSQDQGYKGVYFTKNDQFGGFTFYMKFNTDGTVQMTSDFNSETDIISSSYEVRLGTSTELVFTTRNHIQKVSETSFGDTDGFRGTSVFQYFSNDNGIITFRDVRNRDAGFLTLEPTGFTNFTTESVVKAQASLAQRENILPTPTTSVFQVLRIENGNGISNFNLNYDPANLFASPRITSDDGSVTEFNFGIAFTEDGLVISPALEFEGETYVNFVYDAATSSYVSSVNGTTATMLFSNDPAFIDRDFEALPDLGPRGFLYRPRLGSNPLTSIGFDALIGEISANFAGGGLGAWSVNDVQFVVDFQSDNCDTFLFIQLLREADGAAFNSFYCFEKGVLNDRKLFLTYTGPTPGNSEFFEPLVMPLIDFFNSSEGLIYTDEGAFTSNLSSFSNKAGTFTSAENPALRVYGLWFS
>CP025791.1|AUP78616.1|1877656_1878532_-|hypothetical-protein
MIKNFNTMKKYFIITLISIALTGLVACSDSSNSVGKSQIDTTPPILNDLDIWLRSNFVSPYNIEILYKWDINDTDVDRFIHPPFEESVRPMAEALQKAWIEPYTALGGENFIKNIAPRQFTFAGGFNFDPDTPTRILGIAEAGSKITLFDLDFLDFTDINSIKQPLKTVQHEYAHILNQNIPFDIIYGQINPENYNANWFNRSDAQARELGYITAYASSQSGEDFVEMVSEMLTNSKADFDAIVDGIVSDEARAIIRLKESIVVEYYQTNFGIDIYELQALTDAATQELVN
>CP025791.1|AUP81564.1|1878543_1880028_-|RagB/SusD-family-nutrient-uptake-outer-membrane-protein
MKFNIIKAVVVFLIVSSCNDILDETPDNRTTIDSVEKIAELLVGAYPEAGYVSFLEPMSDNAGDKGTSATSEFRINEEMYFWRDLDDTDIDTPTNYWNDAYAAIAQANQALLSIEELGGGSELNALKGEALLCRAYAHFMLVTIFSKAYNTTTARTDLGIPYVTEPETVLLGDYQRGNVADVYASIQKDIEAGLPLITDNYDVPAFHFTKKAANAFASRFYLVIGDWQKVITTSTAALAGGNEANELRNMLLATTLTFQDQVALYMSSTVQPANLLLVSGNSRYNRIEGVARYQLTSNISNELFGSNITGKGWSYDIFTRGGSSNRLTPKYQEYFRFTNQAAGIGIPFVTYVLLSTDEALLNRAEAHAMLGQLDEAAADINTSLSLKTSGYDPATDELSAADIATIYGVVDPTLYTPFYAIPSEALPIVSAILDMRRTIFYNEGLRWFDIKRHDIAVEHLDFFGNSSLLPKSDDRRAIQIPEAAQSFGIQKNPR
>CP025791.1|AUP78617.1|1880048_1883675_-|SusC/RagA-family-TonB-linked-outer-membrane-protein
MKSLSVFLVLFSLYSFSNSYSQGKKLRIDIKKATLMRMIESIENQSEFVFIYSDEVLPELKKVLGNIQIKNETISKVLDKVVNKEKLIYSINERQIILNKKIEDPDSNVQRQISGNVTAATDGLPLPGVNIIIEGTSRGVQTDFNGNYAINATEGEVLKVSFIGMITKFITVGSNTVIDIVMEEDFADLDEVVITGYQNVRRELFTGASQTIKAEDIKLDGVADISRALEGRAAGVSVQNVTGTFGAAPRITIRGSSSILGDTKPIWIIDGVIQEEIVNLSVSDLVSGDPNTLLSSAVAGLNATDIQSFEILRDASATALYGARALNGVVVITTKSGKKNQKPTFNYAAEFAVRDLPRYSNYDLLNSQETVSVYREMESKGFLDLPSSFQGRFGGIYNIMYRAINTYDENTGQFQLQNTPEARAQFLQQYELANTDWFKTLFRTTPTQTHTLSYSGGGENSTSYASLGYYTDGGWSIADRVRRVTGNLRNTYYLSDNKLKITTQIQGSIRNQLAPGTLAREEDVVFGSFTRDFDINPFSYSLNTSRALRPRDNNGNLEYSRYNWAPFNILNEIQNNSLELNVADLKFQGQAEYQINENLNYNFLGSARYVTSNGEQAATENSNVAGAYRADETTIVQDQNTFLFTDPDEPNSRPRVVLPVGGILTTTKNTLVTYTFRNTLDYTRRFNDSHGIRIYGGQEYRYTDRSESSNTGYGYQFSRGGTVFTDPGILKKVILEGNEYFSSQETRQREVSFFANVTYDFDKKYVLNVTGNYEGSNRAGKSSDTRWLPTYTVGAKWNIDKEDFIQNSNVISSLAFRPSYGLVALLADNATNNLAVFRNQITDRLNNDDRENFIDIEDLQNSELTWEKTLELNLGLDVGFFNNRIMMNFDAYFRKGKDLIDLIRTTGIGGESLKLGNNSEMTTNGVEFQLNTINVDTDDFRWKTGFNISHFNQEVTSLKQEANVFDLITGTGRGNAVGFPKGALFSYKFEGLNEWGLPQFLTDNEDYDPDRPYALINFQDTEDALDNLVYEGATEPNLSGGLANNFKYKNWDFSFFVSFSAGNKIRLNPAYRSEYTDLDVFPREFVNRWLVPGDENITDIPVIPSKSLLQSYGDTSLQIAYNAYNYSTARVADGGFVRMKNITLGYSLDRRTIDKLGLSNFRMSLQSTNPFLIYSDSKLGGQDPEFFRSGGVAYPISRLFTFSLNIGF
>CP025791.1|AUP78618.1|1883830_1885039_-|hypothetical-protein
MDLYSKYIENDAFLSWVYNPTPETNRFWKDYIEENPQEEEIINVLKEILIDIKTEDVRLSEEEKEEVFTKILNKIDTKDKSNKVYSLVKKTYKYAAIFVLLLVGTAVIINNSYKRSNNFIYEEINEVSLDSTAKTNTRLVIEAGTPLLIHEKKSVIEYTKQGNVVLNERDTIKVDIKNEGKSLLFNKLIVPFGKRSKVILSDGSVVHLNAGTRFVFPKEFAEDDRTVFLSGEAFFEVATNKEKPFVVKTIDEKILIEVLGTKFNVSAYPIDPEILTVLTEGKVVVVEKNIFNTQRAILKPGQLASWNKTEKRVNIKYVNTDNYTLWTSGLLYFESESIMNIVRKIERFYNVKIVFENIADAKNINVSGKLDLNDNIEKTLENLTTTTKFKFEIINDKKYVLK
>CP025791.1|AUP78619.1|1885187_1885805_-|hypothetical-protein
MSIIEETIQEESEEVWIKFVNGDKNAFTSIYNLNVDALFSYGMKLNPEKGFVKDCIQDVFLDIYEHRKQISTPKNIRFYLFKALKHTMFRELKKERKKSHLPEHENLSFITAYNIETKTISTEVEEHQKELVAKIIKELTPKQQEILYLRFTKGFSYIEISEIININHNSVRKQVYRVIKKLRKNPIFNTTTNSGVYLLLILSQL
>CP025791.1|AUP78620.1|1886389_1886989_+|ribonuclease-HII
MLLKNHSKYSLECGTDEAGRGCLAGPVTAAAVILPKKFENTLLNDSKQLSEKKREILKPIIETQALTFGVAHIFQEEIDSINILNASILAMHKSIDSLAKKPEFIIVDGNKFKPYNGIPFETIIKGDGKYLSIAAASVLAKTHRDMYMNTIHKEYPMYNWKQNKGYPTKEHRAAIEKYGITKYHRKSFRLLPEQLKLDI
>CP025791.1|AUP78621.1|1887062_1889498_+|ribonuclease-HII
MRFFCFSLLFLLIFNCSNTKTNRSELIDFVPKNATVVLKTSNLESLKSSIDNSDFLQKISNTDSYQKLENTLGNLWYLKPTSDILICLSKDLKDSLQYSIITKYNKQLFKTDSLPNYIEETLAYKNKTITKSTLNNNTFYSTVIDSVFVASSSKDNINALFNNNTATDAELEKTYAIVGNDKTLSTILKPGNTFLESLFIEDSLSHKPFTNYVAADVSISQDEILFNGVTKAVDSSKSLINIFKNTIPQENQIQNITPSNSDGFMSFTFNDYDIFKTNLDRFNKKDSIVNKTTLFNDIIEVGVIYEDKNHAIVLNSIDVIATKDALLSEQNRIGSYRGVAIFGFSLPSLFTETFAPLVSFNKANKYCILDNFFVFAGSTEMLQNIIANYQNKTTFSEKNYFQDIKNNLSDASSLMQVVTPTSLNTIINKNLKKNSDYKLADYNTSALQCIYETNFAHVNGVIKKNKVKGSLNSVSEELNIKLDTDILTNPQFVKNHITKQKEIVVQDINNNLYLISNKGKILWKKQIQGAILGSVKQIDIYKNGRLQLIFTTPNRLYVIDRNGNDVTPFPIRFNDEITQPLAVFDYDKNKNYRLLVTQGKRILMYNVKGQTVSGFTFKSANNTITCEPKHFRIGTKDYIVFKTKSKLYILDRTGKTRVKPKTANSYSNQPIYLYNNNFTTTSSDGNLITVDAKGNVSTKDLDLSEKHFLETSSKSLVVFDENKLSIKRKTTELDYGDYSAPRLFYINDKIYVAITDKQAHKIHLYDSQAKLLPNFPVYGNSPIVLDNIDKDRNLEFVSKGEDNSIILYQIN

Crispr_ID: CP025791_8

• CRISPR_ID: CP025791_8
• CRISPR_location: 5020644-5020762
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of CP025791_8

Consensus_repeat	Method
GCCTTAGCAAAAAGTGTGTGAATCGCTTATCC	CRISPRCasFinder

spacers of CP025791_8

>8.1|5020676|55|CP025791|CRISPRCasFinder
TGAGCGAAGCCGAAGGATCTAATTAACAAAATCTAAAAGTTAACCACCACTTTTA

CRISPR arrays and Neighbor proteins around CP025791_8

CRISPR arrays

The CRISPR arrays of CP025791_8

>merge|CP025791|8|5020644-5020762|CRISPRCasFinder
GCCTTAGCAAAAAGTGTGTGAATCGCTTATCCTGAGCGAAGCCGAAGGATCTAATTAACAAAATCTAAAAGTTAACCACCACTTTTAGCCTTAGCAAAAAGTGAGTGAATCGCTTATCC

>CP025791|8|8|5020644-5020762|CRISPRCasFinder
GCCTTAGCAAAAAGTGTGTGAATCGCTTATCC	TGAGCGAAGCCGAAGGATCTAATTAACAAAATCTAAAAGTTAACCACCACTTTTA
GCCTTAGCAAAAAGTGAGTGAATCGCTTATCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP025791.1|AUP80991.1|5009959_5010568_+|alpha-ketoglutarate-dependent-dioxygenase-AlkB	unknown	unknown	gnl|CDD|372627
CP025791.1|AUP80993.1|5011648_5011855_-|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP81001.1|5021374_5021770_-|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP80995.1|5012599_5013316_-|DUF4197-domain-containing-protein	unknown	unknown	gnl|CDD|379394
CP025791.1|AUP81004.1|5023789_5024575_-|glutamine-amidotransferase	unknown	unknown	gnl|CDD|153233
CP025791.1|AUP81006.1|5024989_5026243_-|MFS-transporter	unknown	unknown	gnl|CDD|340887
CP025791.1|AUP80998.1|5016181_5017036_-|formyltetrahydrofolate-deformylase	unknown	unknown	gnl|CDD|235676
CP025791.1|AUP80990.1|5009727_5009973_+|metal-binding-protein	unknown	unknown	gnl|CDD|376933
CP025791.1|AUP81000.1|5020940_5021378_+|hypothetical-protein	unknown	unknown	gnl|CDD|293876
CP025791.1|AUP80996.1|5013703_5014843_+|hypothetical-protein	unknown	unknown	gnl|CDD|239264
CP025791.1|AUP80997.1|5014886_5015984_-|cell-envelope-biogenesis-protein-OmpA	unknown	unknown	gnl|CDD|143586
CP025791.1|AUP81008.1|5028156_5028765_+|hypothetical-protein	unknown	unknown	gnl|CDD|377941
CP025791.1|AUP81005.1|5024618_5024999_-|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	unknown	unknown	gnl|CDD|319925
CP025791.1|AUP81009.1|5028912_5029899_-|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP81002.1|5021892_5022336_+|ArsR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224439
CP025791.1|AUP80999.1|5017182_5020626_+|methylmalonyl-CoA-mutase	unknown	unknown	gnl|CDD|239650
CP025791.1|AUP81007.1|5026641_5028051_+|hypothetical-protein	unknown	unknown	gnl|CDD|365848
CP025791.1|AUP80994.1|5012035_5012539_+|hypothetical-protein	unknown	unknown	unknown
CP025791.1|AUP80992.1|5010656_5011460_+|cobalamin-binding-protein	unknown	unknown	gnl|CDD|238564
CP025791.1|AUP81003.1|5022422_5023793_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP025791.1|AUP80991.1|5009959_5010568_+|alpha-ketoglutarate-dependent-dioxygenase-AlkB	gnl|CDD|372627	pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily.	1.34854e-32
CP025791.1|AUP81004.1|5023789_5024575_-|glutamine-amidotransferase	gnl|CDD|153233	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	1.23615e-35
CP025791.1|AUP80995.1|5012599_5013316_-|DUF4197-domain-containing-protein	gnl|CDD|379394	pfam13852, DUF4197, Protein of unknown function (DUF4197). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 228 and 249 amino acids in length.	5.52049e-107
CP025791.1|AUP81006.1|5024989_5026243_-|MFS-transporter	gnl|CDD|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.30371e-63
CP025791.1|AUP80998.1|5016181_5017036_-|formyltetrahydrofolate-deformylase	gnl|CDD|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	7.95314e-163
CP025791.1|AUP80990.1|5009727_5009973_+|metal-binding-protein	gnl|CDD|376933	pfam02805, Ada_Zn_binding, Metal binding domain of Ada. The Escherichia coli Ada protein repairs O6-methylguanine residues and methyl phosphotriesters in DNA by direct transfer of the methyl group to a cysteine residue. This domain contains four conserved cysteines that form a zinc binding site. One of these cysteines is a methyl group acceptor. The methylated domain can then specifically bind to the ada box on a DNA duplex.	5.86775e-08
CP025791.1|AUP81000.1|5020940_5021378_+|hypothetical-protein	gnl|CDD|293876	cd16318, MUS_TUS_MBL-B1, Myroides odoratimimus MUS-1, MUS-2, TUS-1 and related metallo-beta-lactamases, subclass B1; MBL-fold metallo-hydrolase domain. Includes the chromosome-encoded MBLs Myroides odoratimimus MUS-1 and related MBLs. MBLs (class B of the Ambler beta-lactamase classification) are a diverse group of metallo-enzymes that are capable of catalyzing the hydrolysis of a wide range of beta-lactam antibiotics. MBLs have been divided into three subclasses B1, B2 and B3, based on sequence/structural relationships and substrates, with the B1 and B2 MBLs being most closely related to each other. This subgroup of MBLs belongs to the B1 subclass. B1 enzymes are most active with two zinc ions bound in the active site, and have a broad-spectrum substrate profile.	0.00160133
CP025791.1|AUP80996.1|5013703_5014843_+|hypothetical-protein	gnl|CDD|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	6.40807e-17
CP025791.1|AUP81005.1|5024618_5024999_-|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein	gnl|CDD|319925	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.04967e-07
CP025791.1|AUP81008.1|5028156_5028765_+|hypothetical-protein	gnl|CDD|377941	pfam07920, DUF1684, Protein of unknown function (DUF1684). The sequences featured in this family are found in hypothetical archaeal and bacterial proteins of unknown function. The region in question is approximately 200 amino acids long.	4.50487e-62
CP025791.1|AUP81002.1|5021892_5022336_+|ArsR-family-transcriptional-regulator	gnl|CDD|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	4.09258e-35
CP025791.1|AUP80999.1|5017182_5020626_+|methylmalonyl-CoA-mutase	gnl|CDD|239650	cd03678, MM_CoA_mutase_1, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, unknown subfamily 1; composed of uncharacterized bacterial proteins containing a C-terminal MCM domain. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. In some bacteria, MCM is involved in the reverse metabolic reaction, the rearrangement of succinyl-CoA to methylmalonyl-CoA. Members of this subfamily also contain an N-terminal coenzyme B12 binding domain followed by a domain similar to the E. coli ArgK membrane ATPase.	0
CP025791.1|AUP81007.1|5026641_5028051_+|hypothetical-protein	gnl|CDD|365848	pfam00067, p450, Cytochrome P450. Cytochrome P450s are haem-thiolate proteins involved in the oxidative degradation of various compounds. They are particularly well known for their role in the degradation of environmental toxins and mutagens. They can be divided into 4 classes, according to the method by which electrons from NAD(P)H are delivered to the catalytic site. Sequence conservation is relatively low within the family - there are only 3 absolutely conserved residues - but their general topography and structural fold are highly conserved. The conserved core is composed of a coil termed the 'meander', a four-helix bundle, helices J and K, and two sets of beta-sheets. These constitute the haem-binding loop (with an absolutely conserved cysteine that serves as the 5th ligand for the haem iron), the proton-transfer groove and the absolutely conserved EXXR motif in helix K. While prokaryotic P450s are soluble proteins, most eukaryotic P450s are associated with microsomal membranes. their general enzymatic function is to catalyze regiospecific and stereospecific oxidation of non-activated hydrocarbons at physiological temperatures.	6.57829e-67
CP025791.1|AUP80997.1|5014886_5015984_-|cell-envelope-biogenesis-protein-OmpA	gnl|CDD|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	1.17514e-34
CP025791.1|AUP80992.1|5010656_5011460_+|cobalamin-binding-protein	gnl|CDD|238564	cd01144, BtuF, Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	2.29262e-44

Protein sequences

>CP025791.1|AUP80999.1|5017182_5020626_+|methylmalonyl-CoA-mutase
MKQQEAYKPKHKVRIVTAASLFDGHDASINIMRRIIQATGVEVIHLGHDRSVEEVVNTAIQEDVNAICLTSYQGGHNEYFKYMYDLLKEKGAGHIKIFGGGGGVILPSEIKDLMDHGITRIYSPDDGREMGLQGMINDLVEQSDFAIGDALNGEADSLTKKQPKSIARIISSAENFPEVAKDVLNKIHEKNKTSKAPVLGITGTGGAGKSSLVDELVRRFLSDFPEKTVGIISVDPSKRKTGGALLGDRIRMNAINSPRVYMRSLATRQSNLALSKYVNEAVEVLKAAEYDLIILETSGIGQSDTEIIEHSDVSLYVMTPEFGAATQLEKIDMLDFADLVAINKFDKRGALDALRDVKKQYMRNNNLWEVPQEELPVFGTIASQFNDPGMNTLYKAVIDLLVEKADADLKSTFTISGAMSEKIFVIPPARTRYLSEIAETNRAYDQKANTQVEVAQKLYGIYKTICSVANVTSGTSTERSLIKKSGLDQEEVLRFAQNDNDKNFLELLLKEFDRVKLDLDPYNWEVIVGWDEKVDKYKNPIYSFKVRDKEINIKTHTESLSHTQIPKVALPKYQAWGDILRWCLQENVPGEFPYASGLYPFKRTGEDPARMFAGEGGPERTNRRFHYVSMGLPAKRLSTAFDSVTLYGNDPDPRPDIYGKIGNAGVSVCCLDDAKKLYSGFNLADVLTSVSMTINGPAPMLLGFFMNAAIDQQCELYIKEKGLEKEVEAKIAKIYKGKERPKYNGELPEGNNGLGLMLLGVTGDRVLPLDVYNDIKTKTIAQVRGTVQADILKEDQAQNTCIFSTEFALRLMGDVQEYFIENNVRNFYSVSISGYHIAEAGANPITQLALTLSNGFTYVEYYLSRGMDINKFGPNLSFFFSNGIDPEYAVIGRVARKIWAKAMKHKYGANARAQMLKYHIQTSGRSLHAQEIDFNDIRTTLQALYAIYDNCNSLHTNAYDEAITTPTEESVRRAMAIQLIINKELGLAKNENPIQGSFIIEELTDLVEEAVLLEFDRITERGGVLGAMETMYQRSKIQEESLYYETLKHNGDFPIVGVNTFLSSKGSPTVLPKEVIRATEEEKQFQIKILENLHKANDTTALLKELQTKAVHNENIFEVLMEVCKVCSLGEITNALFEVGGQYRRNM
>CP025791.1|AUP80998.1|5016181_5017036_-|formyltetrahydrofolate-deformylase
MNKITLLIHCKDRPNIIASVTNFIAKEGGNIVYIDQHVDREQDIFFMRLESEFTAQSFSTDAFKESFKNNLVNGFDMKWRIYSSEVKPKMALFISKYDHCLYDLLGRYNSGELNLEIPFIVSNHLDLKPIADNFKIPFHHIPVTKDTKAEAEDKQLKLLEEHHIDFIVLARYMQIVSEKLITKYPNKIINIHHSFLPAFVGAKPYHSAYKRGVKIIGATSHYVTEELDAGPIIEQDVAHVSHTHSIKDLIAKGRDLEKIVLANAVKLHADRKVMVYNNKTVIFS
>CP025791.1|AUP80997.1|5014886_5015984_-|cell-envelope-biogenesis-protein-OmpA
MKTNLFLSLFLLLSLGFSQAQNLPENPEPGKCYVKCITKDEFKDIEETIEVYPSYTKLEIVPATYKTVEERVLVKEATKKFVYVPATYETVEVSYVKKEGRTDLKVIPASFGSDSRTFEIYPKTSGWEYKETACNSPSKDDCVVACFVEYPARFKDVGFTTLANDASTNNIPISEVNTVYKKRVIKTPARMNEIDIPAEYATIKRQVVATPATTRSVTVAARNKTVTKTVLAKKGGITTWEEVDCGLLDANVLPIFYELASARITPASKRVIDETLLPLLKNKPVSIELMSHTDSRGNDDYNMSLSQQRANSVVNYLVSKGISRSRLSAKGYGETRLVNRCSNGVDCAESEHKKNRRTEFRVLSN
>CP025791.1|AUP80996.1|5013703_5014843_+|hypothetical-protein
MILKMKLRKLLIFLFVFFSSLVIFGQIKVSEFIQTSKLSETDNNALYFIDFWATWCGPCIHASKYLETLQKQNPNNFYIISLTKENPEAVKQFIRKHKTGLAIAIDFKGETYRKHKVLSLPYGVLYNAEGTKLWEGHPAEFKQYHIKRYLKRNSKRIAVNEMFQTSIYKEETSKEAFVLNKDFEFFRLKEDLNFNSLQIKKLNGVLELKGNLKDILAYTLHVYKKQINLSEDLNESYQMQFKLDSNAFFNQTETIMKALSINKQLVKDKGEVLVFNIVKPTFWDTRQIEWGNDSPHFLIGEADIQADNVSLSRVKYQLSNLLETPVLLEDYVDDSKLHDWQIHYKYFDLMVANMNDNYGIKIEKKITDYTQYVITKKAP
>CP025791.1|AUP80995.1|5012599_5013316_-|DUF4197-domain-containing-protein
MIRKFLVFALVYNLTACAELQQVVNQLPQDGGSIIGNTEIASGLRQALDFGINKQVTKLTQTDGFFKNELVKIVLPQELQKVDKTLRDIGLSKLADEGLKVLNRAAEDAVKEATPIFVDAVKGITFADAKNILLGKNDAATRYLSAKTRTALYSKFNPVIKNSFSKVGADQIWANLITKYNNIPFTNNVNPDLTDYVTGEALDGVFTMIAAEETEIRTKLSSRTTDLLKKVFALQDKY
>CP025791.1|AUP80994.1|5012035_5012539_+|hypothetical-protein
MKFFLNTLFILLFSLTNYAQETNCKCCKEKHNEFDFWIGTWTVYNTDGKVVGKNVIDKIQDNCILRENWTSEKGNLTGTSNNFYNYDTKQWEQIWIDNQGGNLHLKGNRVRNQMILLTDVANNKEGKPFYHRVTWTLNDDGTVRQYWETITDDKDITVAFDGLYKKE
>CP025791.1|AUP80993.1|5011648_5011855_-|hypothetical-protein
MNKLDNIETHKKRLCKRYKELIEQAYNFRQTDSALSDISEYRAIKLLDKLNRLKYLARENSHVHLNKI
>CP025791.1|AUP80992.1|5010656_5011460_+|cobalamin-binding-protein
MKSIRTIKDQLDRIIHLKETPQRIISLVPSQTELLCDLGLEDFLVGVTKFCVHPHHIRKDVAVIGGTKQIHLDKIKALQPDIILCNKEENTKAIVESCESICNVHVSDIFTINDSLELISQYGDIFNKAKEALIIVNSIQRELKDFKTFIKNKPVLKTVYFIWKDPWMAAANNTFINYLLELNKFENTFKNESRYPVVELGKSTVNEDVDTVLLSSEPYPFKEKHIKDIQEFYPNATILLADGEMFSWYGSRLIKAFKYFKNLRLSL
>CP025791.1|AUP80991.1|5009959_5010568_+|alpha-ketoglutarate-dependent-dioxygenase-AlkB
MELFDELVDKTRNWLPKDGEVNYYGKIFSMEEADHYFNTLLNTIAWRNDEAIIFGKKIITKRKVAWYGDKPYEYTYSNTTKHALNWTAALLELKAIIEKETGETFNSCLLNLYHSGEEGMAWHSDGETDLKKDGAIGSLSFGAERKFSFKHKQTNEKVELVLKHGSLLVMKDITQTHWLHRLPPTKRITAPRVNLTFRTMVE
>CP025791.1|AUP80990.1|5009727_5009973_+|metal-binding-protein
MVRHNDISDIDLRRRIKRRKIQLGGNRNLKIYGTLSCSSGKRMKTENRVFFSSEKEAVKHGYRPCGHCMRLQYKNWKHGIV
>CP025791.1|AUP81000.1|5020940_5021378_+|hypothetical-protein
MRNVLVLFLLILSIGCSSDDGKPKEENSKLLGKWKLIEELLDPGDGSGTFTPVTSDRVIEFFNDGTVTVNGILCYMSSDVGISSSGTYSEVIGNEFRDGEIVFKGCLSSNSEAETKILFKLEDGNLILWYFCIEPCGQKFKKLTD
>CP025791.1|AUP81001.1|5021374_5021770_-|hypothetical-protein
MSTNIPLNLSELPIYKKAVEIIRLSQSISTYLNHDLSVLKSDGTEDTNIYFSGDIVQQSVSLAPEILNAELERGSEKKYKHIASLKRLTNLLYKNSYRLERSNSNGKDFLPILRSELKKFKKLQRSWMLTL
>CP025791.1|AUP81002.1|5021892_5022336_+|ArsR-family-transcriptional-regulator
MDIDGLNWKILRCLQENARLSNAEIGRRVGVSSPAVSERIKKMEDLGVIEGYKAIISPFEVGYQLKAIITLRAFMGKLKPFLDKVKTYDEVVNCYRITGNENIVMEVVLRNQKHLESFIDELIVYGESKTQIVLSQVVKNGSVVKRD
>CP025791.1|AUP81003.1|5022422_5023793_+|hypothetical-protein
MSRFFVLIFISSFGYVIGQNNDFETEKVVDSITVKNTEETFALYLPANFNKQEPSAIVFIFDPVARGKIGIQPFIEAAEKHNYILICSNNCRNGPFKDNYKRINNLFETVFAIFNINRDRIYTAGFSGGSRLATSVAVLTKQIQGIIGCGAGFPSNRMRMPGIETFSYVGLVGDEDMNYKEMFTVKEWYSKFNIDNELFIYNGNHSWPPSNQILKAFDWLELQAYKKGIKSADESFIKESFDSNYTSAELLEKNNKIEHAVWEYERIVRNYSRYFKLDSLILKIKALKKSKKYRIDAKKRETIKNLELKITKAFRSKFKFEFENNKNNYKWWEKEFSNFRDKYLLNEDDDLKKMGERINYSIFALAYETGQKELRKNNIKKALYCHKLNTVLYPDKPYVFLRLALDYALLDNEEKVIVNLKKAIDNGFNNKGYVLKSPELSKYIEKEAFKKLLDRI
>CP025791.1|AUP81004.1|5023789_5024575_-|glutamine-amidotransferase
MKYIFYTLYILVFISCNSSSKKKEETTSNELPKHASTSLRTNADYKKSFPKLEPNRYNVAFLIMDGTYNTELTAPFDIFQHTIFRDSIKAMNVFTVANTDNAITTFEGMRILPDFNYLKDALPKIDILVVPSAEHHLDSDLEDTAMINFVKQVDQDAQFVTSHCDGAFVLAKAGLLNNAISTTFPGDIDKMKTMFPKLDIREEVLFVHDGKYITSAGGAKSFEAALYLCEFLYGKEIAQSLAGGLVIDWNLNKVPHIVVPH
>CP025791.1|AUP81005.1|5024618_5024999_-|glyoxalase/bleomycin-resistance/extradiol-dioxygenase-family-protein
MDLNQITIPSLDVEKATEFYKTLGLHLIVDAAPRYVRFECPDGNSTFSIHKVDAMPQGNGITIYFEDDNLDDLVTNLQKKGIRFTQLPEDQTYLWREARLQDLDGNNIILFHAGENRKNPPWRVNS
>CP025791.1|AUP81006.1|5024989_5026243_-|MFS-transporter
MKTLFNNYVNTFKGLSTEVWWLSLITLINRAGTMVIPFLSLYLTKSLNFTPSDVGWIMSAFGLGSVVGSWLGGKLTDKIGFYKVMVFSLLATGGLFIVLQFLNTFILFCLGIFLVMLVADMFRPAIFVALSAYSKPENKIRSVTLIRLAINLGFSAGPAIGGIIITSLSYGGLFWVDGITCILATLVLVNVLNPKKVKTLDDVKTENPKSVYGDKAFLIFFMAMVLFGVVFLQYFSTMPLYYKDAHFLSEFEIGLLLGLNGFLIFVFEMPLIKWLENTRFTKTGLMLFGAILTGLSFVILNFTNWAGVLVIGMLLMSFGEMIAFPFSNAFALDRAKKGNQGEYMALYSISFSIAHIFGHNTGLQLIDKVGFDNTWYIITLLAALCVFLLFLLSQYLNALKRRKEKIKNEEEKEILWI
>CP025791.1|AUP81007.1|5026641_5028051_+|hypothetical-protein
MTDNQLVEVRELKSPKGAFLLGHLPQFNTYNKHQVLERWVEECGDLFKIHFVGKEFVVSANPDINNKMLRLRPEGFKRFSKIDEILKEMGVDGVFNAEGDTWKRHRKPIAEALSVKNVKAYYPIILDKTNRILEKFKNYSQQKTIVDVQKEFMAFTIDITTEIAFGHKLDTINNRADSFQKHLEVIFPMINTRVTAPIPIWRYFKRKKDKTLDDSLKAIEKVIYEFIDGAKKRIAENPKLKEHPSNFLEALLVENGDVNFTDKEIYGNVFTMLLAGEDTTSNSLSWAMFYLAQHPETVEKVREEAKRVYTEDAPNNYENVEDLKYANAVAQETMRLKPTTPQLYLESNDDIIVEHVVIPKGTSIILQNKVAQTQDDYFSSPDDFVPERWLSGGCPMHENHAPNVMRAFGGGARYCPGMHLAKTEMVVLISTLCKHFNFELEVAPEDVREKFEFTMYPGNLKVTFTPVVD
>CP025791.1|AUP81008.1|5028156_5028765_+|hypothetical-protein
MKNKYVLAVLLLTTIFSCAQDKRPLLGETEFQKKINAEYKDVTTSPLKDKDRKHFEGLDFFKFDSAYVVKAQFKRTPNETPFKMKTTTDRLPVYVKYGELAFNLKGEAFKLNIYQNQGLIKKEGFEDYLFLPFLDETNGLESYGGGRYIDARIPKGDSMVIDFNTAYNPYCAYNDKYSCPLVPRKNYLKIRIEAGVKVFGEH
>CP025791.1|AUP81009.1|5028912_5029899_-|hypothetical-protein
MKYFTHPKGIFEIRIPLDWYYKNEVAGYENKSPFSFELFENTQGCFQLSCYHKNENKLNSNLPKGQYNQDKLKFIQSELPDSEFKMILWATVVEDYFFMAKYICQPTKKNLKVINKQIEKVEKCLSTLMCLSEDRRDFVISCDRFEKFNASLAASFDLKNKALGNRSFIELIIINANQIDAYLRLCIALKFQIIEKSSLFKLEYLLQSENDRPIMEKKIYDKAKLMDILSDEQHDKLYTLYGLRNKVVHRYIITDIKTRELMDIGYQYEVLCEEIRLVLANIETEQFEKKLGYHGLKDPHRDRDQDHVNELYSMVNAKHFYEEFYREI

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	2911771 : 2917321	6	Sphingomonas_phage(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>CP025791|2911771:2917321|DBSCAN-SWA
TTCAACTTAAAACACCGCAAAAATCTAACACTACTTTATCTTTGGATACCTCCTTCAATTCTTTAAACTGCTTGTGAGCGACTAAAAAAACTATAATATCAGCTTTTTCATAGGCTTTAAGGTAATTTGTTAATTTAAAAACCTTGTGAGCTTCAATATTCGGTTCTACAATATAGTATTCTTCGTTGTTAGCATTTTGAAGTACTTTTTGAGCTATATATTTTGCAGGCGATTCACGTAAATCATCAATATTAGGCTTAAATGCAAGTCCCATAATAGCTATACCTGGTTTTCTACCATGTTTTAATTCAAATTCCAATTTAGCCGTTTGTACTTTTTCAGCACACCAAAAAGATTTGTAATTATTAATCTCACGAGCCTTACCAATAATTTTAGACTCCATCGGATAATCGGCAACAATGAAATATGGATCAACGGCAATGCAATGTCCCCCAACACCACAACCCGGTTGTAAAATATTTACTCTAGGATGCCTATTTGCCAACTGAATAAGTTCCCAAACATTTATATCTGCCTTATCGCAAATAAGCGATAATTCATTAGCAAATGCAATCTGTACATCACGCGATGAATTTTCAACTAATTTGCACATTTCTGCCGTTCTTGCATTTGTTTTGTGCAACGCTCCTTCAATAAATTTGCTATAAAATTCAACAGCTTTATCAGTAGATTTTTCATCTATTCCTCCAATCACTCTATCATTATGAACCAATTCATACATGACATTTCCCGGAAGAACACGCTCAGGACAATAGGCTATACTAAGCTTTCCTTGCAATTCGGGTCTTTCCGAATATATTAAACTCATCATCTTTTCCGTAGTTCCAATAGGTGACGTCGACTCAATTATATATAAATCGTCTTCTTTTAAGAACGGAATAACAGCTTTTGTTGCTGCTTCTACAAATGATATATCTGGTTCGTTTTTCCCTTTAAAAGGTGTAGGGACAACTATAAGATATGCATTTACTTCGACAGGCATGATTGAAGCTCTTAGATAGCCTTCTTTTACTGCATTAGCAACTGCTATATCTAATTCAGGCTCTACAATGTGTATTTCCCCCTTATTGATAGTTTCTACAACTTTAGGGTTAATATCGACTCCGTGAACAACGGTCTTATTTTTCGCTATTAATGCTGCCGTTGGAAGACCTATATACCCCAACCCTACCATCACAACTTCTGGTGTTCTGCTCATTATTTATAAATTTGAAATAAAATTAACTATCTTTTCACAAGCCAATCCGTTTCCATAAGGGTTATGTAACTTGCCCATTTGGGCATAGGCATCATCATCGTTCAATAATCTTTCTGTTTCTAATACAATTTTTTTAATATCTATACCCACTAACAGAACTGTTCCTGCATCAACAGCTTCAGGCCTTTCCGTAGTATCACGCATGACTAATACTGGTTTTCCTAAACTAGGTGCTTCTTCCTGTACACCTCCACTATCGGTTATAATAATATATGACTGATTCATTAACCATACAAATGCAGGATAAGACAAGGGGCTTATAAGTTTTACATTATCAATATCTCCTAGTAATTCATACACAGGTTTCTGAACGTTTGGATTTAAATGTACAGGATAAATAATTTGAGTGCCAGAGTTTTCAATCGCTATCTGTTTCAGTGCACTACAAATATTTATAAATCCTTGTCCATGATTTTCTCTACGGTGACCTGTTACTAAAACCAACCTTTTACCTTCTTTGATTAATGGTTTTAATTTTTCAATCTCTTGATCTACAAAATTTTCAGATTGTACTTTAGCAGTGCTAAAATGAAGTGCATCTATTACTGTATTTCCTGTAACTATAATGTCTTTATCATTGACATTTTCTTTCTGTAAATTCTTTCGAGATGTTTCTGTAGGAGAAAAATGAAAATCTGAAATTCTTCCCGTAATACTTCTATTAATTTCTTCTGGAAAAGGAGACCATTTATTAAAGGTTCTCAACCCAGCCTCGATATGGCACACTTTAGCTCCAGAATAAAAGGCTGCTATACTAGCTGCCATAGTCGTTGTAGTGTCTCCATGCACATATACATAGTCTGGCTTAAAACCTTCTAAAACTGGCTTTAGATTTGTTATTATCTCAGCTGTCAGAGAATATAAATTCTGATCTGGTTTCATTAAATCCAAATCATAATCAGGTGTGATTTCAAAAAACTCCAGAACCTGATCCAACATTTCTCTATGTTGTGCAGTTATGCAAACTTTCGTTTCAAAATGATGTTCATGTTTTAAAAATTCTTTTACTAAGGGAGCCATTTTTATAGCCTCTGGTCTAGTTCCAAAAACAATTAAGTTTTTCTTTTTCATTTATATAGATTTGGCTAAAACACTATTTTTTGGTCGTGCTGCAAAAGTACGACAATTCTTTATCCTAACAAGATTTACTTTGTCAGAAATATTATTCTCCCGTAAAATTTGTTCTGCAAAACTATACCACGTCATTGACTCATCATCAGAAAAATGATGAGTTCCAAAATTGCTGTTTTTACTATCAATAATATCAACAATAAATTTGGACAATGTTATTGTTTCTGTCGGGCAACCTACTTGTTCATCAGTAACAAAAAGCTCTCTTTCTGTTTTAGCTTTATTTAAAATAATTCGATAAAAATTATGACCATACTTTTTACTGTACAACCATGATGTTCTAATTATAAAATGTTTTTTTAAAATGTTATTAATATATTTTTCTCCTTGCAATTTCGATTTACCATATTCGTTTATAGGATTAGGAGTATCTTGAATAGTATAAGGCCCCGCTTTTTCACCGTCAAACACATAATCAGTTGAAATATGAATTAAAATGATATCTTTTTTTTTGCATATTTCAGCCATATTTTTAACGCCTTCCGCATTTACTTCATAAGCGATTTTCGATATTTTTTCTGCCTGTTCAACATTTGTATAAGCCGCACAATTTAAACAATAATCAAAATTCTTATTATTAAAAAATGAGCTTAATTCTTTCGCTTTAGTAATATCCAATTCAGTTTTTGACACAAAAACAAAATCAAGACCTTTCTCATTATCAGAATATAATTCTTTAATTGTCTTGCCTAATTGTCCATTAGCACCTGTAACTAAAACTTTAACACCCATCTTCAAAATCTTTAAATGAAGATAATTGCTTATCTTTTTCTGATATTATAAGTTTTTCTAAGGGGTAGTTCCATTCTATACCTAAATCTTTATCATTATATAAAATACCTGATTCTGATTCTTTGTTATAGAAATTATCACATTTATAAGAAAAAATAGTATCGTCTTCCAGTGTTAAAAAACCATGGGCAAACCCCTTCGGAATATATACTTGTTTATGCTCTATATCATCCAAAACGATAGAAAAATGTTTACCAAAAGTTGAAGACTCTTTTCTAATATCTACGCAAATGTCAAGTACTTTTCCTCTTATAACATGTATTAACTTGGCTTGAGCATATTCACTGGTTTGAAAATGTAATCCCCTTAAAACTCCTTTTGAAGATTTTGATTGATTATCCTGTACAAAATTAGTAGTAACCCCTGTTTCTTTCTCAAATTTTTTTTTATTAAAACTTTCAAGAAAAAAGCCTCTTTTGTCTTCAAAAACTTTAGGCTTTAAAACAAAACACCCTTTTAAATATGTTTCTTCAACGATCATCTCTATACTAAATGTTGTAAGTATTCACCATAACCACTTTTAAGTAATGGTTTTGCTAGTCTATTAAGTTGAGATTTATCTATATATCCCATTTTATAGGCTATTTCTTCAATACAACCTATTTTTAGTCCTTGTCTTTCTTCAATTACCTGTACAAATTGAGAGGCTTGCATTAGTGAATTAAAAGTCCCTGTATCTAGCCAGGCGATACCTTTATCCAGGATTTCCACACTAAGTTCTCCTTTTTCCAAATAAGCTTTATTAATATCTGTTATTTCTAATTCCCCTCTTTTACTTGGCTTAATATTTTTTGCAACATCAATCACTTTATTATCATAAAAATAAATTCCTGGAACTGCAAAATTAGACTTAGGTTGTTTAGGTTTCTCTTCAATAGAAATCGCTTTGTTACTTTGGTCAAATTCTACTACTCCATAACGTTTAGGGTCTAAAACATGATATGCAAAAATGACTCCTCCTTCAGGATTCGTATTGGCTTTTAAAATTTGCTCTAATCCTGAACCATAAAAAATATTATCTCCTAAAATTAATGCAGCACTATCTTTTCCGATAAAATCTTCTCCAATTAAGAATGCTTCTGCTAAGCCATTTGGAGCTTCCTGTACAGCATAATGAAAACTGCAACCATAATCATCACCATCTCCTAATAAATCTTTAAACCTAGGAGTATCTTTTGCTGTCGAAATAATTAAAATCTCATTTATTCCAGCCGACATCAATGTCGTTAAAGGATAGTAAATCATTGGTTTATCATAAACAGGCATAAGCTGTTTACTCACCACTTTAGTAAGTGGATGCAAACGTGTACCAGATCCTCCTGCTAAAATAATTCCTTTCATTTATCTTTTATATTTTTTAATATACCAATCAATCGTCTTTCTTATTCCTGTTTCAAAATTTTCTTCTGCCTTCCAACCTAATTCTTTTTTAATTTTAGTGGCATCTATGGCATATCTAAAATCATGTCCAGGTCTATCTTTAACAAATACAACCTGGTCTTTATACGACTTATCTTTCGGAAATTTTTCATCTAAAATATCACAAATTGTATTGGCAATATATAAATTATCTCGTTCATTTTCACCTCCTATATTATATGTTTCACCCGAAACTCCTTTACTAAAAGCTAAATCTATTCCTTTACAATGGTCTAATACATATAACCAATCTCTAATATTTTTTCCGTCTCCATAAATAGGAACCCTTTCGCCTTTCAATGCTTTTCTTATAATAGTAGGAATTAATTTTTCATCATGCTGTTTCGGTCCATAATTATTAGAGCAATTTGTTGTAACAACATTCATTCCATAAGTATGAAAATAACTTCTAACAATAAAATCTGAAGACGCTTTTGACGCACTATAAGGACTGTTGGGAGCATAAGGTGTTTGTTCCGTAAATAAACCTATATTTCCTAAAGAACCATACACCTCATCTGTAGAAATATGGTGAAATCTAGATGATTCATAGCCTCTTCTAATTACGTTTGGAGCTTGCATCCAATGGTTTTTAGCAACATCGATTAAATTAAACGTGCCTAAAACATTAGTATTTATAAACTCATTTGGGGCTTTTATAGAATTATCTACATGTGATTCGGCTGCAAAATGAATAACATTATTGAAGTTATATTTTTTAAATAAATCTTCTATTAAGGGCCTATCGCAAATATCTCCTTTGATAAACTTACAACTATCATTATTTTCTATTTCACTCAAATTAGACAATTCTCCTGCATAAGTAAGCTTATCTATATTTATTATTTTAACAAGAGGATATTTTTTGAGAAAGTATGCAATGAAATTAGATCCTATAAATCCTGCCCCTCCAGTTATTAAAATCGTCAT

Protein sequences of DBSCAN-SWA_1

>CP025791|2911771:2917321|2911771_2912989_-|AUP79393.1|DBSCAN-SWA
MSRTPEVVMVGLGYIGLPTAALIAKNKTVVHGVDINPKVVETINKGEIHIVEPELDIAVANAVKEGYLRASIMPVEVNAYLIVVPTPFKGKNEPDISFVEAATKAVIPFLKEDDLYIIESTSPIGTTEKMMSLIYSERPELQGKLSIAYCPERVLPGNVMYELVHNDRVIGGIDEKSTDKAVEFYSKFIEGALHKTNARTAEMCKLVENSSRDVQIAFANELSLICDKADINVWELIQLANRHPRVNILQPGCGVGGHCIAVDPYFIVADYPMESKIIGKAREINNYKSFWCAEKVQTAKLEFELKHGRKPGIAIMGLAFKPNIDDLRESPAKYIAQKVLQNANNEEYYIVEPNIEAHKVFKLTNYLKAYEKADIIVFLVAHKQFKELKEVSKDKVVLDFCGVLS
>CP025791|2911771:2917321|2912992_2914120_-|AUP79394.1|DBSCAN-SWA
MKKKNLIVFGTRPEAIKMAPLVKEFLKHEHHFETKVCITAQHREMLDQVLEFFEITPDYDLDLMKPDQNLYSLTAEIITNLKPVLEGFKPDYVYVHGDTTTTMAASIAAFYSGAKVCHIEAGLRTFNKWSPFPEEINRSITGRISDFHFSPTETSRKNLQKENVNDKDIIVTGNTVIDALHFSTAKVQSENFVDQEIEKLKPLIKEGKRLVLVTGHRRENHGQGFINICSALKQIAIENSGTQIIYPVHLNPNVQKPVYELLGDIDNVKLISPLSYPAFVWLMNQSYIIITDSGGVQEEAPSLGKPVLVMRDTTERPEAVDAGTVLLVGIDIKKIVLETERLLNDDDAYAQMGKLHNPYGNGLACEKIVNFISNL
>CP025791|2911771:2917321|2914901_2915453_-|AUP79396.1|DBSCAN-SWA
MIVEETYLKGCFVLKPKVFEDKRGFFLESFNKKKFEKETGVTTNFVQDNQSKSSKGVLRGLHFQTSEYAQAKLIHVIRGKVLDICVDIRKESSTFGKHFSIVLDDIEHKQVYIPKGFAHGFLTLEDDTIFSYKCDNFYNKESESGILYNDKDLGIEWNYPLEKLIISEKDKQLSSFKDFEDGC
>CP025791|2911771:2917321|2915455_2916313_-|AUP79397.1|DBSCAN-SWA
MKGIILAGGSGTRLHPLTKVVSKQLMPVYDKPMIYYPLTTLMSAGINEILIISTAKDTPRFKDLLGDGDDYGCSFHYAVQEAPNGLAEAFLIGEDFIGKDSAALILGDNIFYGSGLEQILKANTNPEGGVIFAYHVLDPKRYGVVEFDQSNKAISIEEKPKQPKSNFAVPGIYFYDNKVIDVAKNIKPSKRGELEITDINKAYLEKGELSVEILDKGIAWLDTGTFNSLMQASQFVQVIEERQGLKIGCIEEIAYKMGYIDKSQLNRLAKPLLKSGYGEYLQHLV
>CP025791|2911771:2917321|2916313_2917321_-|AUP79398.1|DBSCAN-SWA
MTILITGGAGFIGSNFIAYFLKKYPLVKIINIDKLTYAGELSNLSEIENNDSCKFIKGDICDRPLIEDLFKKYNFNNVIHFAAESHVDNSIKAPNEFINTNVLGTFNLIDVAKNHWMQAPNVIRRGYESSRFHHISTDEVYGSLGNIGLFTEQTPYAPNSPYSASKASSDFIVRSYFHTYGMNVVTTNCSNNYGPKQHDEKLIPTIIRKALKGERVPIYGDGKNIRDWLYVLDHCKGIDLAFSKGVSGETYNIGGENERDNLYIANTICDILDEKFPKDKSYKDQVVFVKDRPGHDFRYAIDATKIKKELGWKAEENFETGIRKTIDWYIKKYKR
>CP025791|2911771:2917321|2914120_2914912_-|AUP79395.1|DBSCAN-SWA
MGVKVLVTGANGQLGKTIKELYSDNEKGLDFVFVSKTELDITKAKELSSFFNNKNFDYCLNCAAYTNVEQAEKISKIAYEVNAEGVKNMAEICKKKDIILIHISTDYVFDGEKAGPYTIQDTPNPINEYGKSKLQGEKYINNILKKHFIIRTSWLYSKKYGHNFYRIILNKAKTERELFVTDEQVGCPTETITLSKFIVDIIDSKNSNFGTHHFSDDESMTWYSFAEQILRENNISDKVNLVRIKNCRTFAARPKNSVLAKSI

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUP79393.1|2911771_2912989_-	UDP-N-acetyl-D-mannosamine dehydrogenase	A0A127AXI2	Bacillus_phage	4.8e-23	24.7
AUP79394.1|2912992_2914120_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	1.3e-30	30.3
AUP79395.1|2914120_2914912_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.2e-30	34.1
AUP79396.1|2914901_2915453_-	dTDP-4-dehydrorhamnose 3,5-epimerase	H9NC63	Sphingomonas_phage	1.3e-28	40.6
AUP79397.1|2915455_2916313_-	glucose-1-phosphate thymidylyltransferase	H9NC64	Sphingomonas_phage	6.7e-96	62.8
AUP79398.1|2916313_2917321_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.9e-80	47.1